BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9618
(542 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/208 (54%), Positives = 153/208 (73%), Gaps = 7/208 (3%)
Query: 42 EPFVIGICGGSASGKTTVATKIIESLNV-------PWVTLLSMDSFYRVLNEEQHKKAAQ 94
EPF+IG+ GG+ASGK++V KI++ L V +LS DSFYRVL EQ KA +
Sbjct: 19 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALK 78
Query: 95 NEYNFDHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGIL 154
++NFDHPDAFD EL+L TL+ + EGK V +P+Y+FV+HSR+ T +Y A+V++FEGIL
Sbjct: 79 GQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGIL 138
Query: 155 AFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIA 214
AF++ +V +L MK+FVDTDAD RL+RR+ RDI RGRDLE ++ QY+ VKPAF F
Sbjct: 139 AFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCL 198
Query: 215 PSMVHADIIVPRGGENCVAIDLIVQHIH 242
P+ +AD+I+PRG +N VAI+LIVQHI
Sbjct: 199 PTKKYADVIIPRGADNLVAINLIVQHIQ 226
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 33/40 (82%)
Query: 308 SVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQV 347
+V +P+Y+FV+HSR+ T +Y A+V++FEGILAF++ +V
Sbjct: 106 TVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEV 145
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 115/213 (53%), Positives = 154/213 (72%), Gaps = 7/213 (3%)
Query: 42 EPFVIGICGGSASGKTTVATKIIESLNV-------PWVTLLSMDSFYRVLNEEQHKKAAQ 94
EPF+IG+ GG+ASGK++V KI++ L V +LS DSFYRVL EQ KA +
Sbjct: 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALK 80
Query: 95 NEYNFDHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGIL 154
++NFDHPDAFD EL+L TL+ + EGK V +P+Y+FV+HSR+ T +Y A+V++FEGIL
Sbjct: 81 GQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGIL 140
Query: 155 AFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIA 214
AF++ +V +L MK+FVDTDAD RL+RR+ RDI RGRDLE ++ QY+ VKPAF F
Sbjct: 141 AFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCL 200
Query: 215 PSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247
P+ +AD+I+PRG +N VAI+LIVQHI L
Sbjct: 201 PTKKYADVIIPRGADNLVAINLIVQHIQDILNG 233
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 33/40 (82%)
Query: 308 SVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQV 347
+V +P+Y+FV+HSR+ T +Y A+V++FEGILAF++ +V
Sbjct: 108 TVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEV 147
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 221 bits (564), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 151/216 (69%), Gaps = 8/216 (3%)
Query: 39 EQVEPFVIGICGGSASGKTTVATKIIESLNVPWV-------TLLSMDSFYRVLNEEQHKK 91
+ + PF+IG+ GG+ASGK+TV KI+E L V +LS D FY+VL EQ K
Sbjct: 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAK 80
Query: 92 AAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFE 151
A + +YNFDHPDAFD +L+ TL+ + EGK V+VP Y+FVTHSR T +Y A+V++FE
Sbjct: 81 ALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFE 140
Query: 152 GILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFST 211
GIL F++ ++ ++ +++FVDTD+DVRL+RR+ RD+ RGRDLE ++ QY VKPAF
Sbjct: 141 GILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEE 199
Query: 212 FIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247
F P+ +AD+I+PRG +N VAI+LIVQHI L
Sbjct: 200 FCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNG 235
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 308 SVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLR 355
+V+VP Y+FVTHSR T +Y A+V++FEGIL F++ ++ + F LR
Sbjct: 111 TVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDM-FHLR 157
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%)
Query: 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH 101
+PFVIGI GG+ASGKTT+A + +L V LL MD +Y+ L ++ + N+DH
Sbjct: 5 KPFVIGIAGGTASGKTTLAQALARTLG-ERVALLPMDHYYKDLGHLPLEE--RLRVNYDH 61
Query: 102 PDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQV 161
PDAFD L L Q L G V++P+Y+F ++R R P+ A V+I EGIL + ++
Sbjct: 62 PDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKEL 121
Query: 162 LELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHAD 221
+L+D+KVFVD DAD R RRLKRD+L RGR LEGV+ QY+ VKP F+ P+ +AD
Sbjct: 122 RDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYAD 181
Query: 222 IIVPRGGENCVAIDL 236
+IVPRGG+N VA+++
Sbjct: 182 VIVPRGGQNPVALEM 196
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 305 RMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFH 343
R V++P+Y+F ++R R P+ A V+I EGIL +
Sbjct: 79 RGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLY 117
>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPF|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
Length = 224
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 32/42 (76%)
Query: 470 IHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGT 511
I + +P V++VT+AVD +N +Y++PGIG+FGDRYFGT
Sbjct: 182 IERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 223
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 9/58 (15%)
Query: 427 QIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFK---------VSIHSIAY 475
Q++ + T IR+K+T ++EF+FY+ RLIRL+IE AL+ LPF+ VS H +++
Sbjct: 24 QLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSF 81
>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
Length = 243
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 32/42 (76%)
Query: 470 IHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGT 511
I + +P V++VT+AVD +N +Y++PGIG+FGDRYFGT
Sbjct: 201 IERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 242
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 9/58 (15%)
Query: 427 QIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFK---------VSIHSIAY 475
Q++ + T IR+K+T ++EF+FY+ RLIRL+IE AL+ LPF+ VS H +++
Sbjct: 43 QLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSF 100
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 36/52 (69%)
Query: 461 LSLLPFKVSIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512
L L+ I ++ A P+V++ T+++D +NE+ Y+IPG+G+ GD+ FGT+
Sbjct: 157 LVLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK 208
>pdb|1XTT|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTU|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTV|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1VST|A Chain A, Symmetric Sulfolobus Solfataricus Uracil
Phosphoribosyltransferase With Bound Prpp And Gtp
pdb|3G6W|A Chain A, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|B Chain B, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|C Chain C, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|D Chain D, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
Length = 216
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 459 FALSLLPFKVSIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFG 510
+ +S++ + ++ I +P + + T A+DPE+N Y++PG+G+ GDR FG
Sbjct: 165 YIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216
>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|B Chain B, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|C Chain C, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|D Chain D, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
Length = 208
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 34/51 (66%)
Query: 462 SLLPFKVSIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512
++L + IA P+ ++V +A+D +N++ Y++PG+G+ GDR +GT+
Sbjct: 158 AILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 461 LSLLPFKVSIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512
+ L+ + ++ A P+V I +A+D +N++ Y++PG+G+ GDR FGT+
Sbjct: 158 MCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK 209
>pdb|1RZ3|A Chain A, Structure Of A Possible Uridine Kinase From Bacillus
Stearothermophilus
Length = 201
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA 104
V+GI G S SGKTT+A ++ ++L +++ ++ + E+ +
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHXDDHIVERAKRYHTGNEEWFEYYYLQ 83
Query: 105 FDFELLLPTLQR-LKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLE 163
+D E L L R LK ++ +P Y+ T + RT + ++ I EG+ +
Sbjct: 84 WDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDXIXIEGVF-LQRKEWRP 142
Query: 164 LLDMKVFVDTDADVRLAR 181
D V++D ++R AR
Sbjct: 143 FFDFVVYLDCPREIRFAR 160
>pdb|3DMP|A Chain A, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|B Chain B, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|C Chain C, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|D Chain D, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
Length = 217
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 29/37 (78%)
Query: 476 AFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512
A P+VK+ +++D ++++ Y++PG+G+ GDR FGT+
Sbjct: 180 AHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFGTK 216
>pdb|1O5O|A Chain A, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|B Chain B, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|C Chain C, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|D Chain D, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
Length = 221
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 461 LSLLPFKVSIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512
++L+ + ++ + +VKI +A+D +N++ Y+IPG+G+ GDR F T+
Sbjct: 170 VALIAAPEGVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRTK 221
>pdb|3TQC|A Chain A, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
pdb|3TQC|B Chain B, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
Length = 321
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 29/156 (18%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPW-----VTLLSMDSFYRVLNEEQHKKAAQNEY 97
P++IGI G A GK+T ++++++L W V +++ D F N + K+
Sbjct: 92 PYIIGIAGSVAVGKST-TSRVLKALLSRWPDHPNVEVITTDGFLYS-NAKLEKQGLMKRK 149
Query: 98 NFDHPDAFDFELLLPTLQRLKEGKK-VDVPI-----YNFVTHSRETRTKPMYGANVIIFE 151
F P+++D LL L +K G++ V +P+ Y+ V E +P +++I E
Sbjct: 150 GF--PESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQP----DIVILE 203
Query: 152 GI--------LAFHNPQVL--ELLDMKVFVDTDADV 177
G+ QV + D +FVD A V
Sbjct: 204 GLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQV 239
>pdb|1SQ5|A Chain A, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|B Chain B, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|C Chain C, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|D Chain D, Crystal Structure Of E. Coli Pantothenate Kinase
Length = 308
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPW-----VTLLSMDSFYRVLNEEQHKKAAQNEY 97
P++I I G A GK+T A +++++L W V L++ D F N+ ++ +
Sbjct: 80 PYIISIAGSVAVGKSTTA-RVLQALLSRWPEHRRVELITTDGFLHP-NQVLKERGLMKKK 137
Query: 98 NFDHPDAFDFELLLPTLQRLKEG-KKVDVPIYNFVTHSR-ETRTKPMYGANVIIFEGILA 155
F P+++D L+ + LK G V P+Y+ + + K + +++I EG+
Sbjct: 138 GF--PESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNV 195
Query: 156 F-------HNPQ---VLELLDMKVFVDTDADV 177
H+P V + +D ++VD D+
Sbjct: 196 LQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDL 227
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 465 PFKV-SIHSIAY---------AFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGT 511
P KV S+H+IA F V+I VD +N+ Y+IPG+G+ GDR +
Sbjct: 149 PLKVKSVHAIAAPEGLKRIEEKFKEVEIFVGNVDERLNDKGYIIPGLGDIGDRLYAV 205
>pdb|1ESM|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
Length = 316
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPW-----VTLLSMDSFYRVLNEEQHKKAAQNEY 97
P++I I G A GK+T A +++++L W V L++ D F N+ ++ +
Sbjct: 88 PYIISIAGSVAVGKSTTA-RVLQALLSRWPEHRRVELITTDGFLHP-NQVLKERGLXKKK 145
Query: 98 NFDHPDAFDFELLLPTLQRLKEG-KKVDVPIYNFVTHSR-ETRTKPMYGANVIIFEGILA 155
F P+++D L+ + LK G V P+Y+ + + K + +++I EG+
Sbjct: 146 GF--PESYDXHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNV 203
Query: 156 F-------HNPQ---VLELLDMKVFVDTDADV 177
H+P V + +D ++VD D+
Sbjct: 204 LQSGXDYPHDPHHVFVSDFVDFSIYVDAPEDL 235
>pdb|2GES|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative, Form-I
(Rt)
pdb|2GET|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative, Form-I
(Lt)
pdb|2GEU|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative,
Form-Ii (Rt)
pdb|2GEV|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative,
Form-Ii (Lt)
Length = 312
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPW-----VTLLSMDSFYRVLNEEQHKKAAQNEY 97
PF+IG+ G A GK+T A +++++L W V L++ D F N E ++ +
Sbjct: 90 PFIIGVAGSVAVGKSTTA-RVLQALLARWDHHPRVDLVTTDGFL-YPNAELQRRNLMHRK 147
Query: 98 NFDHPDAFDFELLLPTLQRLKEGKK-VDVPIYNFVTH-----SRETRTKPMYGANVIIFE 151
F P++++ L+ + +K G P+Y+ + + + + P +++I E
Sbjct: 148 GF--PESYNRRALMRFVTSVKSGSDYAXAPVYSHLHYDIIPGAEQVVRHP----DILILE 201
Query: 152 GILAFHNPQVL---ELLDMKVFVDT 173
G+ L +L D ++VD
Sbjct: 202 GLNVLQTGPTLMVSDLFDFSLYVDA 226
>pdb|3AVO|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Pantothenate
pdb|3AVQ|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With N9-Pan
Length = 322
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPW-----VTLLSMDSFYRVLNEEQHKKAAQNEY 97
PF+IG+ G A GK+T A +++++L W V L++ D F N E ++ +
Sbjct: 100 PFIIGVAGSVAVGKSTTA-RVLQALLARWDHHPRVDLVTTDGFL-YPNAELQRRNLMHRK 157
Query: 98 NFDHPDAFDFELLLPTLQRLKEGKK-VDVPIYNFVTH-----SRETRTKPMYGANVIIFE 151
F P++++ L+ + +K G P+Y+ + + + + P +++I E
Sbjct: 158 GF--PESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHP----DILILE 211
Query: 152 GILAFHNPQVL---ELLDMKVFVDT 173
G+ L +L D ++VD
Sbjct: 212 GLNVLQTGPTLMVSDLFDFSLYVDA 236
>pdb|2ZS7|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Citrate Anion
pdb|2ZS8|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Co- Crystallized With Adp
pdb|2ZS9|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Adp And Pantothenate
pdb|2ZSA|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Adp And Phosphopantothenate
pdb|2ZSB|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Adp, Obtained Through Soaking
Of Native Enzyme Crystals With The Ligand
pdb|2ZSD|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Coenzyme A
pdb|2ZSE|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Amppcp And Pantothenate
pdb|2ZSF|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Atp And Adp
pdb|3AEZ|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp And Phosphopantothenate
pdb|3AF0|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp And Pantothenate
pdb|3AF1|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp
pdb|3AF2|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Amppcp
pdb|3AF3|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gmppcp And Pantothenate
pdb|3AF4|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gmppcp
pdb|3AVP|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Pantothenol
Length = 312
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPW-----VTLLSMDSFYRVLNEEQHKKAAQNEY 97
PF+IG+ G A GK+T A +++++L W V L++ D F N E ++ +
Sbjct: 90 PFIIGVAGSVAVGKSTTA-RVLQALLARWDHHPRVDLVTTDGFL-YPNAELQRRNLMHRK 147
Query: 98 NFDHPDAFDFELLLPTLQRLKEGKK-VDVPIYNFVTH-----SRETRTKPMYGANVIIFE 151
F P++++ L+ + +K G P+Y+ + + + + P +++I E
Sbjct: 148 GF--PESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHP----DILILE 201
Query: 152 GILAFHNPQVL---ELLDMKVFVDT 173
G+ L +L D ++VD
Sbjct: 202 GLNVLQTGPTLMVSDLFDFSLYVDA 226
>pdb|2P0E|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Tiazofurin
pdb|2QSY|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With Adp
pdb|2QSZ|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Mononucleotide
pdb|2QT0|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Riboside And An Atp Analogue
pdb|2QT1|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Riboside
Length = 207
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYN 98
F+IGI G + SGKTT+A + + L P +++S D F++ +E + K +Y+
Sbjct: 22 FIIGISGVTNSGKTTLAKNLQKHL--PNCSVISQDDFFKPESEIETDKNGFLQYD 74
>pdb|2QG6|A Chain A, Crystal Structure Of Human Nicotinamide Riboside Kinase
(Nrk1) In Complex With Nicotinamide Mononucleotide
(Nmn)
pdb|2QL6|A Chain A, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|B Chain B, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|C Chain C, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|D Chain D, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|E Chain E, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|F Chain F, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|G Chain G, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|H Chain H, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|I Chain I, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|J Chain J, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|K Chain K, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|L Chain L, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|M Chain M, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|N Chain N, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|O Chain O, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|P Chain P, Human Nicotinamide Riboside Kinase (Nrk1)
Length = 199
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYN 98
F+IGI G + SGKTT+A + + L P +++S D F++ +E + K +Y+
Sbjct: 4 FIIGISGVTNSGKTTLAKNLQKHL--PNCSVISQDDFFKPESEIETDKNGFLQYD 56
>pdb|3AKC|A Chain A, Crystal Structure Of Cmp Kinase In Complex With Cdp And
Adp From Thermus Thermophilus Hb8
pdb|3AKD|A Chain A, Crystal Structure Of Cmp Kinase In Complex With Cdp From
Thermus Thermophilus Hb8
pdb|3AKE|A Chain A, Crystal Structure Of Cmp Kinase In Complex With Cmp From
Thermus Thermophilus Hb8
Length = 208
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVT 73
++ I G SASGK++VA ++ +L VP+++
Sbjct: 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32
>pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp
Length = 206
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 44 FVIGICGGSASGKTTVATKIIESLNVPWV 72
+++G+ GG SGKTT+A + L VP V
Sbjct: 3 YIVGLTGGIGSGKTTIAN-LFTDLGVPLV 30
>pdb|3D3Q|A Chain A, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
pdb|3D3Q|B Chain B, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
Length = 340
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 39 EQVEPFVIGICGGSASGKTTVATKIIESLN 68
E +PF+I I G +ASGKT ++ ++ + N
Sbjct: 3 EXTKPFLIVIVGPTASGKTELSIEVAKKFN 32
>pdb|3IB7|A Chain A, Crystal Structure Of Full Length Rv0805
pdb|3IB8|A Chain A, Crystal Structure Of Full Length Rv0805 In Complex With
5'-amp
Length = 330
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 153 ILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTF 212
ILA H+P + +LDM V V+ L R L RG D+ ++ +++ A
Sbjct: 177 ILALHHPPIPSVLDMAVTVELRDQAALGRVL------RGTDVRAILAGHLHYSTNATFVG 230
Query: 213 IAPSMVHA-----DIIVPRGG 228
I S+ A D+ V GG
Sbjct: 231 IPVSVASATCYTQDLTVAAGG 251
>pdb|3KMV|A Chain A, Crystal Structure Of Cbm42a From Clostridium Thermocellum
pdb|3KMV|B Chain B, Crystal Structure Of Cbm42a From Clostridium Thermocellum
pdb|3KMV|C Chain C, Crystal Structure Of Cbm42a From Clostridium Thermocellum
pdb|3KMV|D Chain D, Crystal Structure Of Cbm42a From Clostridium Thermocellum
pdb|3KMV|E Chain E, Crystal Structure Of Cbm42a From Clostridium Thermocellum
pdb|3KMV|F Chain F, Crystal Structure Of Cbm42a From Clostridium Thermocellum
pdb|3KMV|G Chain G, Crystal Structure Of Cbm42a From Clostridium Thermocellum
pdb|3KMV|H Chain H, Crystal Structure Of Cbm42a From Clostridium Thermocellum
Length = 157
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 474 AYAFPNVKI--------VTSAVDPEINENFYVIPGIGNFGDRY 508
+Y +PN+ I + V PE++ + ++PG+ N GD Y
Sbjct: 15 SYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGY 57
>pdb|2HYP|A Chain A, Crystal Structure Of Rv0805 D66a Mutant
Length = 280
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 153 ILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTF 212
ILA H+P + +LDM V V+ L R L RG D+ ++ +++ A
Sbjct: 167 ILALHHPPIPSVLDMAVTVELRDQAALGRVL------RGTDVRAILAGHLHYSTNATFVG 220
Query: 213 IAPSMVHA-----DIIVPRGG 228
I S+ A D+ V GG
Sbjct: 221 IPVSVASATCYTQDLTVAAGG 241
>pdb|2HYO|A Chain A, Crystal Structure Of Rv0805 N97a Mutant
Length = 280
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 153 ILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTF 212
ILA H+P + +LDM V V+ L R L RG D+ ++ +++ A
Sbjct: 167 ILALHHPPIPSVLDMAVTVELRDQAALGRVL------RGTDVRAILAGHLHYSTNATFVG 220
Query: 213 IAPSMVHA-----DIIVPRGG 228
I S+ A D+ V GG
Sbjct: 221 IPVSVASATCYTQDLTVAAGG 241
>pdb|2HY1|A Chain A, Crystal Structure Of Rv0805
Length = 280
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 153 ILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTF 212
ILA H+P + +LDM V V+ L R L RG D+ ++ +++ A
Sbjct: 167 ILALHHPPIPSVLDMAVTVELRDQAALGRVL------RGTDVRAILAGHLHYSTNATFVG 220
Query: 213 IAPSMVHA-----DIIVPRGG 228
I S+ A D+ V GG
Sbjct: 221 IPVSVASATCYTQDLTVAAGG 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,788,349
Number of Sequences: 62578
Number of extensions: 534265
Number of successful extensions: 1346
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 37
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)