Query psy9618
Match_columns 542
No_of_seqs 421 out of 2852
Neff 6.8
Searched_HMMs 46136
Date Sat Aug 17 00:22:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4203|consensus 100.0 1.2E-44 2.6E-49 389.3 13.2 334 17-512 17-473 (473)
2 COG0572 Udk Uridine kinase [Nu 100.0 1.7E-39 3.8E-44 313.9 17.4 204 41-246 6-209 (218)
3 PTZ00301 uridine kinase; Provi 100.0 3.1E-35 6.7E-40 287.1 17.4 203 42-246 2-208 (210)
4 PF00485 PRK: Phosphoribulokin 100.0 6.1E-32 1.3E-36 260.9 16.8 187 45-232 1-193 (194)
5 PRK05480 uridine/cytidine kina 100.0 3.9E-29 8.5E-34 243.7 17.6 204 41-246 4-207 (209)
6 cd02029 PRK_like Phosphoribulo 100.0 2.1E-29 4.6E-34 250.8 15.7 183 45-228 1-203 (277)
7 PLN02318 phosphoribulokinase/u 100.0 2.1E-28 4.5E-33 264.8 13.6 197 41-248 63-271 (656)
8 PLN02348 phosphoribulokinase 100.0 1.2E-27 2.6E-32 250.0 16.7 184 39-228 45-245 (395)
9 TIGR00235 udk uridine kinase. 99.9 3E-27 6.5E-32 230.4 17.4 203 41-245 4-206 (207)
10 PRK15453 phosphoribulokinase; 99.9 7.7E-27 1.7E-31 234.3 16.8 186 41-227 3-208 (290)
11 cd02023 UMPK Uridine monophosp 99.9 1.1E-26 2.3E-31 224.6 16.5 197 45-243 1-197 (198)
12 cd02025 PanK Pantothenate kina 99.9 2.6E-26 5.7E-31 226.1 14.7 183 45-231 1-214 (220)
13 cd02028 UMPK_like Uridine mono 99.9 7.1E-26 1.5E-30 216.2 12.8 174 45-225 1-178 (179)
14 PRK05439 pantothenate kinase; 99.9 1.5E-25 3.2E-30 229.8 15.5 190 39-232 82-303 (311)
15 TIGR00554 panK_bact pantothena 99.9 1.6E-24 3.4E-29 220.8 16.2 189 40-231 59-282 (290)
16 PLN02541 uracil phosphoribosyl 99.9 9.5E-25 2.1E-29 216.4 11.1 96 416-511 30-243 (244)
17 TIGR01091 upp uracil phosphori 99.9 1.7E-24 3.7E-29 211.2 10.2 93 418-511 1-206 (207)
18 PRK00129 upp uracil phosphorib 99.9 7.5E-24 1.6E-28 207.1 10.0 94 418-512 3-209 (209)
19 COG0035 Upp Uracil phosphoribo 99.9 9.3E-24 2E-28 201.9 9.6 94 418-512 3-210 (210)
20 PRK07429 phosphoribulokinase; 99.9 1.4E-22 3E-27 210.2 17.5 184 39-228 4-187 (327)
21 cd02026 PRK Phosphoribulokinas 99.9 1.5E-22 3.3E-27 205.5 15.5 178 45-228 1-178 (273)
22 PF14681 UPRTase: Uracil phosp 99.9 1.3E-23 2.7E-28 205.2 6.4 89 423-511 2-207 (207)
23 PRK06696 uridine kinase; Valid 99.9 4.7E-22 1E-26 196.1 14.8 180 40-228 19-211 (223)
24 cd02024 NRK1 Nicotinamide ribo 99.9 2.5E-22 5.5E-27 192.6 8.6 164 45-212 1-179 (187)
25 COG0572 Udk Uridine kinase [Nu 99.9 5E-23 1.1E-27 199.5 0.9 115 301-462 78-192 (218)
26 PRK09270 nucleoside triphospha 99.8 4.3E-20 9.3E-25 183.0 15.1 185 40-229 30-223 (229)
27 PRK07667 uridine kinase; Provi 99.8 4E-20 8.8E-25 178.5 12.7 171 42-225 16-193 (193)
28 PRK08233 hypothetical protein; 99.8 8.6E-18 1.9E-22 159.2 16.0 175 42-247 2-177 (182)
29 PRK06547 hypothetical protein; 99.7 1.8E-17 4E-22 157.3 12.0 152 41-225 13-171 (172)
30 PRK14733 coaE dephospho-CoA ki 99.7 7E-17 1.5E-21 157.0 11.9 186 42-245 5-199 (204)
31 PTZ00451 dephospho-CoA kinase; 99.7 3E-16 6.4E-21 156.6 15.6 190 43-246 1-209 (244)
32 COG1072 CoaA Panthothenate kin 99.7 1.8E-16 3.8E-21 157.7 12.3 146 39-188 78-234 (283)
33 PRK14730 coaE dephospho-CoA ki 99.7 1.9E-16 4.2E-21 153.3 11.9 168 44-228 2-179 (195)
34 PRK00081 coaE dephospho-CoA ki 99.7 2.6E-16 5.7E-21 152.1 11.4 181 43-245 2-191 (194)
35 PTZ00301 uridine kinase; Provi 99.7 1.1E-17 2.4E-22 163.5 1.4 113 301-460 77-189 (210)
36 PLN02422 dephospho-CoA kinase 99.7 4.4E-16 9.5E-21 154.1 12.5 185 44-245 2-195 (232)
37 COG0283 Cmk Cytidylate kinase 99.7 1.1E-15 2.5E-20 147.1 14.7 191 43-247 4-219 (222)
38 KOG3308|consensus 99.7 1E-16 2.2E-21 151.9 6.9 181 42-232 3-192 (225)
39 cd02022 DPCK Dephospho-coenzym 99.7 2.1E-16 4.5E-21 150.8 9.0 167 45-229 1-176 (179)
40 PRK14734 coaE dephospho-CoA ki 99.7 2.3E-15 4.9E-20 146.4 15.6 185 43-244 1-194 (200)
41 PRK14732 coaE dephospho-CoA ki 99.6 1.2E-15 2.6E-20 147.8 12.6 183 45-246 1-192 (196)
42 PF01121 CoaE: Dephospho-CoA k 99.6 2.2E-16 4.8E-21 150.8 7.3 167 44-228 1-176 (180)
43 PLN03046 D-glycerate 3-kinase; 99.6 3.6E-15 7.8E-20 156.8 14.2 174 39-215 208-431 (460)
44 cd02029 PRK_like Phosphoribulo 99.6 8.7E-17 1.9E-21 160.8 1.4 112 301-460 78-202 (277)
45 COG1102 Cmk Cytidylate kinase 99.6 3.1E-15 6.7E-20 137.6 11.2 159 44-238 1-166 (179)
46 PRK14731 coaE dephospho-CoA ki 99.6 4.6E-15 9.9E-20 145.1 11.2 186 41-246 3-201 (208)
47 PF00485 PRK: Phosphoribulokin 99.6 3.2E-17 6.9E-22 158.3 -4.7 111 301-459 77-187 (194)
48 PRK13477 bifunctional pantoate 99.6 1.6E-14 3.5E-19 157.4 12.7 193 40-247 281-503 (512)
49 COG0237 CoaE Dephospho-CoA kin 99.5 1.2E-14 2.5E-19 141.1 9.2 181 43-246 2-191 (201)
50 PLN02796 D-glycerate 3-kinase 99.5 5.2E-14 1.1E-18 145.9 13.6 173 38-213 95-317 (347)
51 TIGR00152 dephospho-CoA kinase 99.5 3.6E-14 7.8E-19 136.3 11.6 168 45-228 1-177 (188)
52 PRK03333 coaE dephospho-CoA ki 99.5 3.2E-14 7E-19 151.8 11.0 169 43-229 1-178 (395)
53 PLN02318 phosphoribulokinase/u 99.5 2.8E-15 6.1E-20 163.4 2.3 111 301-459 127-238 (656)
54 KOG3220|consensus 99.5 6.6E-14 1.4E-18 132.9 9.3 187 43-246 1-196 (225)
55 cd02028 UMPK_like Uridine mono 99.5 1.3E-14 2.9E-19 138.5 2.4 79 303-409 70-150 (179)
56 PRK06217 hypothetical protein; 99.5 9.1E-13 2E-17 126.0 14.4 107 43-188 1-107 (183)
57 cd02020 CMPK Cytidine monophos 99.5 9.3E-13 2E-17 120.1 13.9 145 45-227 1-147 (147)
58 PRK11860 bifunctional 3-phosph 99.5 6.2E-13 1.3E-17 150.9 14.5 186 42-248 441-656 (661)
59 TIGR00017 cmk cytidylate kinas 99.4 1.2E-12 2.6E-17 128.9 13.3 190 43-243 2-215 (217)
60 KOG4203|consensus 99.4 6.2E-14 1.3E-18 151.8 4.3 114 301-461 123-237 (473)
61 PLN02348 phosphoribulokinase 99.4 1.9E-14 4.1E-19 151.2 0.1 111 301-460 134-244 (395)
62 PRK15453 phosphoribulokinase; 99.4 4E-14 8.7E-19 142.8 2.4 111 301-459 84-207 (290)
63 PRK04182 cytidylate kinase; Pr 99.4 3.7E-12 8.1E-17 120.2 14.6 167 44-247 1-173 (180)
64 TIGR02173 cyt_kin_arch cytidyl 99.4 4.6E-12 9.9E-17 118.8 14.8 161 44-243 1-168 (171)
65 PRK08118 topology modulation p 99.4 2.3E-12 5.1E-17 121.8 12.4 105 44-192 2-106 (167)
66 PRK00023 cmk cytidylate kinase 99.4 6.1E-12 1.3E-16 124.5 15.8 185 43-247 4-221 (225)
67 PRK01184 hypothetical protein; 99.4 4.7E-12 1E-16 120.8 14.2 172 43-245 1-176 (184)
68 PRK06762 hypothetical protein; 99.3 3.6E-11 7.9E-16 112.7 16.7 154 43-246 2-163 (166)
69 PRK09518 bifunctional cytidyla 99.3 1.1E-11 2.3E-16 141.9 14.9 186 44-246 2-230 (712)
70 cd02025 PanK Pantothenate kina 99.3 8.6E-14 1.9E-18 137.3 -2.6 126 302-460 73-210 (220)
71 COG1428 Deoxynucleoside kinase 99.3 2.3E-11 4.9E-16 117.3 13.5 82 164-246 126-211 (216)
72 PRK07261 topology modulation p 99.3 2.4E-12 5.2E-17 122.1 6.2 113 45-201 2-115 (171)
73 PF13207 AAA_17: AAA domain; P 99.3 3E-12 6.6E-17 113.3 5.7 118 45-193 1-118 (121)
74 PRK12269 bifunctional cytidyla 99.3 4.3E-11 9.3E-16 137.9 15.4 195 43-250 34-288 (863)
75 KOG1017|consensus 99.2 5.8E-12 1.3E-16 118.4 5.0 53 416-468 65-117 (267)
76 PRK00131 aroK shikimate kinase 99.2 1.4E-10 3.1E-15 108.6 14.5 163 41-246 2-170 (175)
77 PRK13949 shikimate kinase; Pro 99.2 3.6E-11 7.9E-16 113.9 9.7 159 44-244 2-168 (169)
78 COG4240 Predicted kinase [Gene 99.2 6.3E-11 1.4E-15 114.7 9.7 126 29-159 39-177 (300)
79 COG0703 AroK Shikimate kinase 99.2 1.2E-10 2.7E-15 109.6 11.3 159 44-246 3-167 (172)
80 PRK05057 aroK shikimate kinase 99.2 3.3E-10 7.1E-15 107.6 14.3 163 42-247 3-171 (172)
81 PRK00625 shikimate kinase; Pro 99.2 2.9E-10 6.3E-15 108.1 13.7 156 45-244 2-170 (173)
82 PRK03839 putative kinase; Prov 99.2 4.1E-10 8.9E-15 107.2 14.8 152 45-247 2-153 (180)
83 KOG2702|consensus 99.2 7.7E-11 1.7E-15 114.2 8.7 156 41-199 117-294 (323)
84 PRK05541 adenylylsulfate kinas 99.2 6.9E-10 1.5E-14 105.2 14.8 162 41-247 5-172 (176)
85 TIGR01360 aden_kin_iso1 adenyl 99.2 3.6E-10 7.7E-15 107.5 12.7 37 43-82 3-39 (188)
86 PRK13948 shikimate kinase; Pro 99.2 7.2E-10 1.6E-14 106.3 14.6 162 41-247 8-175 (182)
87 PLN02200 adenylate kinase fami 99.1 4.3E-10 9.4E-15 112.0 12.9 176 40-247 40-224 (234)
88 TIGR01359 UMP_CMP_kin_fam UMP- 99.1 7.3E-10 1.6E-14 105.4 13.5 35 45-82 1-35 (183)
89 PRK13946 shikimate kinase; Pro 99.1 4.5E-10 9.7E-15 107.6 12.0 162 43-247 10-176 (184)
90 PRK07429 phosphoribulokinase; 99.1 1.6E-11 3.5E-16 127.8 0.6 161 301-512 76-283 (327)
91 PRK08356 hypothetical protein; 99.1 1.1E-09 2.4E-14 105.8 13.2 178 43-246 5-191 (195)
92 TIGR00554 panK_bact pantothena 99.1 1E-11 2.2E-16 127.1 -1.4 140 302-463 136-281 (290)
93 PRK04040 adenylate kinase; Pro 99.1 1.7E-09 3.6E-14 104.3 14.0 172 43-244 2-186 (188)
94 PRK14527 adenylate kinase; Pro 99.1 9.5E-10 2.1E-14 105.8 11.9 38 42-82 5-42 (191)
95 cd02026 PRK Phosphoribulokinas 99.1 3.5E-11 7.6E-16 122.5 1.7 109 302-459 68-176 (273)
96 PRK14532 adenylate kinase; Pro 99.1 1.1E-09 2.4E-14 104.9 11.8 36 45-83 2-37 (188)
97 PRK03731 aroL shikimate kinase 99.1 2.2E-09 4.9E-14 101.1 13.4 155 44-246 3-169 (171)
98 COG1936 Predicted nucleotide k 99.0 3.5E-09 7.7E-14 99.1 13.7 145 44-246 1-155 (180)
99 PRK13947 shikimate kinase; Pro 99.0 6.2E-09 1.3E-13 97.9 15.6 157 45-246 3-167 (171)
100 PRK14531 adenylate kinase; Pro 99.0 1.8E-09 3.9E-14 103.3 11.9 36 44-82 3-38 (183)
101 PRK14530 adenylate kinase; Pro 99.0 1.3E-09 2.9E-14 106.9 11.2 35 45-82 5-39 (215)
102 PRK05480 uridine/cytidine kina 99.0 1.1E-10 2.3E-15 114.0 2.3 112 302-460 77-188 (209)
103 PRK02496 adk adenylate kinase; 99.0 3.2E-09 6.9E-14 101.4 12.3 172 43-245 1-182 (184)
104 PRK13808 adenylate kinase; Pro 99.0 3.1E-09 6.7E-14 110.4 12.9 35 45-82 2-36 (333)
105 TIGR01351 adk adenylate kinase 99.0 3.9E-09 8.4E-14 103.2 12.3 35 46-83 2-36 (210)
106 PRK00279 adk adenylate kinase; 99.0 2.4E-09 5.1E-14 105.1 10.7 35 45-82 2-36 (215)
107 PRK14528 adenylate kinase; Pro 99.0 2.6E-09 5.5E-14 102.7 10.3 168 44-243 2-184 (186)
108 KOG3354|consensus 99.0 1.2E-08 2.6E-13 93.7 13.8 172 43-247 12-188 (191)
109 cd00464 SK Shikimate kinase (S 99.0 2.1E-09 4.6E-14 98.9 9.1 34 46-82 2-35 (154)
110 COG3265 GntK Gluconate kinase 99.0 1.6E-08 3.5E-13 92.4 14.4 155 49-247 1-159 (161)
111 TIGR00235 udk uridine kinase. 99.0 9.3E-11 2E-15 114.4 -0.1 111 301-458 76-186 (207)
112 COG0529 CysC Adenylylsulfate k 99.0 1.6E-08 3.4E-13 95.0 14.3 163 40-247 20-191 (197)
113 PF13238 AAA_18: AAA domain; P 99.0 9.1E-10 2E-14 97.6 5.8 114 46-188 1-115 (129)
114 KOG3079|consensus 98.9 8.5E-09 1.8E-13 97.3 12.3 126 40-188 5-136 (195)
115 KOG2878|consensus 98.9 3.2E-09 6.9E-14 101.2 9.4 127 30-159 20-166 (282)
116 PRK05439 pantothenate kinase; 98.9 6.8E-11 1.5E-15 121.9 -2.1 138 302-463 160-301 (311)
117 PRK08154 anaerobic benzoate ca 98.9 7.7E-09 1.7E-13 107.2 13.0 166 34-246 124-300 (309)
118 PLN02199 shikimate kinase 98.9 4.4E-09 9.6E-14 107.1 10.0 110 43-184 102-214 (303)
119 TIGR01313 therm_gnt_kin carboh 98.9 2.5E-08 5.3E-13 93.2 14.3 34 46-82 1-34 (163)
120 PTZ00088 adenylate kinase 1; P 98.9 1.8E-08 4E-13 100.0 13.3 39 41-82 4-42 (229)
121 COG0563 Adk Adenylate kinase a 98.9 1.6E-08 3.5E-13 96.6 12.1 118 45-187 2-129 (178)
122 PLN02674 adenylate kinase 98.9 1.7E-08 3.7E-13 100.9 12.4 38 43-83 31-68 (244)
123 cd00227 CPT Chloramphenicol (C 98.9 4.3E-08 9.2E-13 93.0 14.4 40 44-84 3-42 (175)
124 PRK14021 bifunctional shikimat 98.8 2.1E-08 4.7E-13 111.4 13.2 162 40-247 3-176 (542)
125 cd01428 ADK Adenylate kinase ( 98.8 1.5E-08 3.3E-13 96.9 9.5 118 46-187 2-127 (194)
126 KOG3347|consensus 98.8 6.9E-08 1.5E-12 88.3 13.0 159 43-246 7-168 (176)
127 PRK10078 ribose 1,5-bisphospho 98.8 3.2E-08 6.9E-13 94.9 11.2 27 44-70 3-29 (186)
128 PRK03846 adenylylsulfate kinas 98.8 1.7E-07 3.8E-12 90.8 15.7 42 41-82 22-65 (198)
129 PRK14737 gmk guanylate kinase; 98.8 1.7E-08 3.6E-13 97.2 8.4 174 42-246 3-183 (186)
130 cd02021 GntK Gluconate kinase 98.8 6.5E-08 1.4E-12 89.0 12.0 36 45-83 1-36 (150)
131 PRK00698 tmk thymidylate kinas 98.8 5.9E-08 1.3E-12 93.6 12.2 26 43-68 3-28 (205)
132 PF01202 SKI: Shikimate kinase 98.8 2.9E-08 6.2E-13 92.8 9.5 149 52-245 1-157 (158)
133 KOG1017|consensus 98.8 7E-10 1.5E-14 104.5 -1.7 85 217-303 135-222 (267)
134 PLN02459 probable adenylate ki 98.7 1.1E-07 2.4E-12 95.7 13.4 116 42-186 28-154 (261)
135 PRK12338 hypothetical protein; 98.7 3.6E-08 7.8E-13 101.9 10.1 39 40-80 1-39 (319)
136 PRK14526 adenylate kinase; Pro 98.7 1E-07 2.2E-12 93.6 12.5 35 45-82 2-36 (211)
137 cd02030 NDUO42 NADH:Ubiquinone 98.7 8E-08 1.7E-12 94.7 11.8 74 165-243 143-217 (219)
138 PF01583 APS_kinase: Adenylyls 98.7 2.8E-08 6E-13 92.8 7.4 43 42-84 1-45 (156)
139 TIGR02322 phosphon_PhnN phosph 98.7 3E-07 6.5E-12 87.2 14.0 26 44-69 2-27 (179)
140 PRK14529 adenylate kinase; Pro 98.7 1.4E-07 3.1E-12 93.2 12.1 112 45-186 2-127 (223)
141 TIGR03574 selen_PSTK L-seryl-t 98.7 5.4E-07 1.2E-11 90.4 16.0 156 45-246 1-168 (249)
142 PRK13975 thymidylate kinase; P 98.7 1.2E-07 2.6E-12 91.2 10.6 27 44-70 3-29 (196)
143 cd02019 NK Nucleoside/nucleoti 98.7 4.7E-08 1E-12 78.7 6.5 27 147-173 34-63 (69)
144 PRK00889 adenylylsulfate kinas 98.7 1.8E-07 3.9E-12 88.5 11.3 40 42-81 3-44 (175)
145 cd01672 TMPK Thymidine monopho 98.7 3.9E-07 8.4E-12 87.0 13.4 74 164-245 125-198 (200)
146 cd02023 UMPK Uridine monophosp 98.6 9.4E-09 2E-13 99.3 1.8 110 302-458 70-179 (198)
147 COG0194 Gmk Guanylate kinase [ 98.6 1.1E-07 2.4E-12 90.4 8.9 172 42-246 3-181 (191)
148 PF13671 AAA_33: AAA domain; P 98.6 3.3E-08 7.2E-13 89.7 5.1 36 45-83 1-36 (143)
149 COG0035 Upp Uracil phosphoribo 98.6 5.1E-09 1.1E-13 101.0 -0.6 80 222-304 75-157 (210)
150 TIGR00455 apsK adenylylsulfate 98.6 1E-06 2.2E-11 84.2 14.6 42 41-82 16-59 (184)
151 PRK13951 bifunctional shikimat 98.6 6.1E-07 1.3E-11 98.6 13.7 35 45-82 2-36 (488)
152 PRK05537 bifunctional sulfate 98.5 8.6E-07 1.9E-11 99.0 14.1 162 41-248 390-563 (568)
153 PF07931 CPT: Chloramphenicol 98.5 3.8E-07 8.3E-12 86.8 9.6 163 44-245 2-173 (174)
154 TIGR00041 DTMP_kinase thymidyl 98.5 1.1E-06 2.4E-11 84.4 12.9 28 43-70 3-30 (195)
155 PRK12339 2-phosphoglycerate ki 98.5 1.3E-07 2.8E-12 91.9 6.1 38 42-81 2-39 (197)
156 PF00406 ADK: Adenylate kinase 98.5 1.4E-07 3E-12 87.3 5.9 113 48-184 1-122 (151)
157 PRK09825 idnK D-gluconate kina 98.5 7.2E-06 1.6E-10 78.2 17.1 36 44-82 4-39 (176)
158 PRK13973 thymidylate kinase; P 98.5 1.1E-06 2.5E-11 86.1 10.9 30 43-72 3-35 (213)
159 TIGR03263 guanyl_kin guanylate 98.5 1.9E-06 4.1E-11 81.6 12.0 26 44-69 2-27 (180)
160 PRK04220 2-phosphoglycerate ki 98.4 1.2E-06 2.7E-11 89.8 10.8 41 40-82 89-129 (301)
161 PHA02530 pseT polynucleotide k 98.4 1.4E-06 3.1E-11 89.4 11.5 37 43-82 2-39 (300)
162 PF00625 Guanylate_kin: Guanyl 98.4 1.1E-06 2.4E-11 84.0 9.6 173 43-246 2-181 (183)
163 PLN02842 nucleotide kinase 98.4 2.2E-06 4.8E-11 93.6 13.1 32 48-82 2-33 (505)
164 COG3954 PrkB Phosphoribulokina 98.4 1.9E-06 4.1E-11 81.9 10.8 183 43-226 5-207 (289)
165 PRK05416 glmZ(sRNA)-inactivati 98.4 7.5E-06 1.6E-10 84.1 14.4 29 43-72 6-34 (288)
166 smart00072 GuKc Guanylate kina 98.3 2.2E-06 4.7E-11 82.1 8.8 173 43-246 2-181 (184)
167 TIGR03575 selen_PSTK_euk L-ser 98.3 1.2E-05 2.6E-10 84.3 15.0 38 45-82 1-41 (340)
168 COG4088 Predicted nucleotide k 98.3 3.3E-06 7.2E-11 81.4 9.5 36 43-78 1-36 (261)
169 PRK07933 thymidylate kinase; V 98.3 8.3E-06 1.8E-10 80.2 12.2 77 164-245 132-211 (213)
170 PF13189 Cytidylate_kin2: Cyti 98.3 3E-06 6.4E-11 81.0 8.8 28 45-72 1-28 (179)
171 cd01673 dNK Deoxyribonucleosid 98.3 1.8E-06 4E-11 82.8 7.3 57 164-225 124-182 (193)
172 PRK00300 gmk guanylate kinase; 98.3 1.4E-05 3E-10 77.4 13.6 27 42-68 4-30 (205)
173 PRK11545 gntK gluconate kinase 98.3 2.6E-05 5.6E-10 73.4 14.7 30 49-81 1-30 (163)
174 PRK05506 bifunctional sulfate 98.3 5.7E-06 1.2E-10 94.0 12.2 43 42-84 459-503 (632)
175 PF14681 UPRTase: Uracil phosp 98.2 3.3E-08 7.1E-13 96.8 -5.9 56 248-303 96-154 (207)
176 PRK13976 thymidylate kinase; P 98.2 3.4E-06 7.3E-11 82.8 8.1 75 165-247 125-201 (209)
177 COG2074 2-phosphoglycerate kin 98.2 5.6E-06 1.2E-10 82.0 9.4 43 37-81 83-125 (299)
178 PLN02924 thymidylate kinase 98.2 1.7E-05 3.6E-10 78.5 12.6 33 39-71 12-44 (220)
179 PRK14738 gmk guanylate kinase; 98.2 3.5E-05 7.5E-10 75.3 14.6 35 30-66 2-36 (206)
180 cd02024 NRK1 Nicotinamide ribo 98.2 1.2E-06 2.6E-11 84.5 4.1 73 302-401 68-154 (187)
181 PF08433 KTI12: Chromatin asso 98.2 1.9E-05 4.1E-10 80.5 13.0 157 43-241 1-169 (270)
182 COG0125 Tmk Thymidylate kinase 98.2 3.5E-05 7.7E-10 75.5 14.3 77 164-247 127-203 (208)
183 PLN02541 uracil phosphoribosyl 98.2 1.9E-07 4.1E-12 93.3 -1.9 56 248-303 131-190 (244)
184 PF03668 ATP_bind_2: P-loop AT 98.2 2.7E-05 5.9E-10 79.1 13.4 68 167-246 84-155 (284)
185 cd02027 APSK Adenosine 5'-phos 98.2 7.8E-06 1.7E-10 75.7 8.8 37 45-82 1-40 (149)
186 PRK12337 2-phosphoglycerate ki 98.1 8.8E-06 1.9E-10 87.8 10.0 40 41-82 253-292 (475)
187 PRK13974 thymidylate kinase; P 98.1 2.3E-05 5E-10 76.8 11.7 71 165-246 135-205 (212)
188 PF06414 Zeta_toxin: Zeta toxi 98.1 6.3E-06 1.4E-10 79.9 7.5 45 40-84 12-56 (199)
189 KOG0635|consensus 98.1 6.1E-05 1.3E-09 69.3 12.9 43 42-84 30-74 (207)
190 PF02223 Thymidylate_kin: Thym 98.1 4E-06 8.6E-11 80.1 5.0 69 164-241 118-186 (186)
191 KOG3877|consensus 98.1 1.2E-05 2.7E-10 80.3 8.3 42 41-82 69-110 (393)
192 PRK06547 hypothetical protein; 98.0 4.4E-06 9.6E-11 79.4 4.0 69 305-403 70-143 (172)
193 PRK07667 uridine kinase; Provi 98.0 3.7E-06 8.1E-11 81.2 3.2 70 302-399 91-160 (193)
194 COG2019 AdkA Archaeal adenylat 97.9 0.00014 3E-09 68.2 11.8 29 42-70 3-32 (189)
195 TIGR01663 PNK-3'Pase polynucle 97.9 5.6E-05 1.2E-09 83.6 10.2 96 41-187 367-470 (526)
196 PRK00091 miaA tRNA delta(2)-is 97.8 4.5E-05 9.8E-10 79.1 7.6 41 42-85 3-45 (307)
197 PHA03132 thymidine kinase; Pro 97.8 0.00011 2.3E-09 81.8 10.5 29 42-70 256-284 (580)
198 PRK06696 uridine kinase; Valid 97.8 8.8E-06 1.9E-10 80.4 1.2 72 307-406 103-175 (223)
199 PHA00729 NTP-binding motif con 97.7 0.00017 3.7E-09 71.4 9.9 109 43-187 17-141 (226)
200 PRK09270 nucleoside triphospha 97.7 9.2E-06 2E-10 80.5 0.6 109 302-459 106-220 (229)
201 PF01591 6PF2K: 6-phosphofruct 97.6 0.00017 3.7E-09 71.4 8.5 154 41-215 10-177 (222)
202 PLN02165 adenylate isopentenyl 97.6 0.00012 2.6E-09 76.3 7.7 35 43-80 43-77 (334)
203 COG1660 Predicted P-loop-conta 97.6 0.00069 1.5E-08 67.7 12.1 69 167-247 85-157 (286)
204 COG1072 CoaA Panthothenate kin 97.6 3.8E-05 8.3E-10 77.3 2.7 79 303-404 157-237 (283)
205 PLN02772 guanylate kinase 97.5 0.0007 1.5E-08 72.0 11.7 25 43-67 135-159 (398)
206 COG3709 Uncharacterized compon 97.5 0.0018 3.9E-08 60.5 12.9 87 143-242 92-181 (192)
207 PRK08099 bifunctional DNA-bind 97.5 0.00026 5.6E-09 76.1 8.1 38 43-80 219-256 (399)
208 COG4639 Predicted kinase [Gene 97.5 0.00062 1.4E-08 63.2 8.9 37 43-84 2-38 (168)
209 PRK06761 hypothetical protein; 97.4 0.0018 3.8E-08 66.4 12.9 29 44-72 4-32 (282)
210 TIGR03499 FlhF flagellar biosy 97.4 0.00057 1.2E-08 70.1 9.1 40 42-81 193-236 (282)
211 COG0645 Predicted kinase [Gene 97.4 0.00061 1.3E-08 64.1 7.9 39 44-85 2-40 (170)
212 KOG4235|consensus 97.3 0.0011 2.4E-08 63.6 9.2 50 142-191 131-180 (244)
213 PF02224 Cytidylate_kin: Cytid 97.3 0.0017 3.6E-08 60.7 10.2 88 146-242 63-156 (157)
214 COG1703 ArgK Putative periplas 97.3 0.0063 1.4E-07 62.2 14.9 160 41-246 49-216 (323)
215 PLN03046 D-glycerate 3-kinase; 97.3 4.7E-05 1E-09 81.2 -0.7 99 303-403 296-402 (460)
216 TIGR01091 upp uracil phosphori 97.2 2.8E-05 6E-10 76.2 -2.8 33 267-299 119-151 (207)
217 PLN02840 tRNA dimethylallyltra 97.1 0.00052 1.1E-08 73.8 5.3 43 39-84 17-61 (421)
218 KOG3062|consensus 97.1 0.0044 9.6E-08 60.8 10.7 124 43-203 1-140 (281)
219 KOG0744|consensus 97.0 0.0046 9.9E-08 63.8 10.5 34 44-82 178-211 (423)
220 smart00382 AAA ATPases associa 97.0 0.00076 1.7E-08 58.9 4.3 38 44-81 3-42 (148)
221 PF00004 AAA: ATPase family as 97.0 0.00079 1.7E-08 59.5 4.1 35 46-81 1-35 (132)
222 TIGR00174 miaA tRNA isopenteny 96.9 0.00058 1.3E-08 70.1 3.4 38 45-85 1-40 (287)
223 PLN02748 tRNA dimethylallyltra 96.9 0.00085 1.8E-08 73.2 4.2 41 41-84 20-62 (468)
224 PRK14729 miaA tRNA delta(2)-is 96.9 0.001 2.2E-08 68.8 4.5 40 41-84 2-43 (300)
225 PF13521 AAA_28: AAA domain; P 96.9 0.00074 1.6E-08 63.0 3.1 27 45-72 1-27 (163)
226 PTZ00322 6-phosphofructo-2-kin 96.9 0.0035 7.5E-08 71.9 9.2 30 43-72 215-244 (664)
227 PF00448 SRP54: SRP54-type pro 96.8 0.0015 3.2E-08 63.5 4.8 39 43-81 1-41 (196)
228 PRK05800 cobU adenosylcobinami 96.8 0.0022 4.7E-08 61.0 5.6 29 44-72 2-30 (170)
229 PRK10751 molybdopterin-guanine 96.8 0.0013 2.9E-08 62.6 4.1 28 42-69 5-32 (173)
230 cd00071 GMPK Guanosine monopho 96.8 0.0011 2.5E-08 60.4 3.4 26 45-70 1-26 (137)
231 PF03205 MobB: Molybdopterin g 96.7 0.0018 3.8E-08 59.6 4.6 34 44-77 1-37 (140)
232 PRK12723 flagellar biosynthesi 96.7 0.0064 1.4E-07 65.1 8.9 40 42-81 173-218 (388)
233 COG1618 Predicted nucleotide k 96.7 0.0017 3.7E-08 60.7 3.8 29 42-70 4-32 (179)
234 PRK00129 upp uracil phosphorib 96.7 0.00017 3.7E-09 70.8 -3.0 32 267-298 121-152 (209)
235 TIGR00150 HI0065_YjeE ATPase, 96.6 0.002 4.3E-08 58.7 4.1 28 43-70 22-49 (133)
236 PRK12724 flagellar biosynthesi 96.6 0.0055 1.2E-07 66.0 8.0 40 42-81 222-264 (432)
237 COG3896 Chloramphenicol 3-O-ph 96.6 0.0091 2E-07 55.7 8.0 175 41-245 21-203 (205)
238 PRK09435 membrane ATPase/prote 96.6 0.0023 4.9E-08 67.2 4.6 41 40-80 53-95 (332)
239 cd00544 CobU Adenosylcobinamid 96.6 0.0091 2E-07 56.7 8.2 28 45-72 1-28 (169)
240 TIGR01425 SRP54_euk signal rec 96.6 0.0036 7.7E-08 67.7 6.0 49 29-81 89-140 (429)
241 TIGR01223 Pmev_kin_anim phosph 96.5 0.041 9E-07 52.4 11.9 26 45-70 1-26 (182)
242 KOG4238|consensus 96.5 0.0073 1.6E-07 62.7 7.4 40 43-83 50-92 (627)
243 PRK12727 flagellar biosynthesi 96.5 0.0074 1.6E-07 66.7 7.9 39 43-81 350-392 (559)
244 PRK09087 hypothetical protein; 96.5 0.016 3.4E-07 57.6 9.5 34 44-80 45-78 (226)
245 PF03308 ArgK: ArgK protein; 96.4 0.0037 8E-08 62.9 4.9 38 42-79 28-67 (266)
246 KOG3078|consensus 96.4 0.005 1.1E-07 61.1 5.7 38 42-82 14-51 (235)
247 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0029 6.3E-08 66.8 4.0 29 41-69 76-104 (361)
248 COG0378 HypB Ni2+-binding GTPa 96.4 0.015 3.2E-07 56.1 8.3 39 43-81 13-52 (202)
249 PRK14722 flhF flagellar biosyn 96.4 0.011 2.4E-07 62.9 8.2 40 42-81 136-179 (374)
250 KOG1384|consensus 96.3 0.016 3.5E-07 59.9 8.9 38 43-83 7-46 (348)
251 TIGR00101 ureG urease accessor 96.3 0.0049 1.1E-07 60.0 4.8 39 43-81 1-40 (199)
252 cd03115 SRP The signal recogni 96.3 0.0043 9.3E-08 58.4 4.3 38 44-81 1-40 (173)
253 TIGR00064 ftsY signal recognit 96.3 0.0047 1E-07 63.1 4.7 41 41-81 70-112 (272)
254 PF02367 UPF0079: Uncharacteri 96.3 0.0051 1.1E-07 55.3 4.3 29 42-70 14-42 (123)
255 PRK11889 flhF flagellar biosyn 96.2 0.014 3E-07 62.5 8.1 40 42-81 240-281 (436)
256 TIGR01526 nadR_NMN_Atrans nico 96.2 0.004 8.6E-08 65.2 3.9 29 44-72 163-191 (325)
257 COG1763 MobB Molybdopterin-gua 96.2 0.0041 9E-08 58.5 3.6 28 43-70 2-29 (161)
258 PF07728 AAA_5: AAA domain (dy 96.2 0.0051 1.1E-07 55.6 4.1 27 46-72 2-28 (139)
259 cd03116 MobB Molybdenum is an 96.2 0.0045 9.7E-08 58.2 3.8 26 43-68 1-26 (159)
260 COG0324 MiaA tRNA delta(2)-iso 96.2 0.0054 1.2E-07 63.4 4.5 40 42-84 2-43 (308)
261 KOG0739|consensus 96.2 0.0095 2.1E-07 60.9 6.1 53 24-86 157-209 (439)
262 PRK09169 hypothetical protein; 96.2 0.033 7.1E-07 69.5 11.6 106 43-183 2110-2218(2316)
263 PF03029 ATP_bind_1: Conserved 96.1 0.0046 9.9E-08 62.0 3.8 33 48-80 1-35 (238)
264 PRK14490 putative bifunctional 96.1 0.0044 9.6E-08 66.0 3.9 29 42-70 4-32 (369)
265 COG1126 GlnQ ABC-type polar am 96.1 0.0039 8.3E-08 61.1 3.0 21 43-63 28-48 (240)
266 PRK14493 putative bifunctional 96.1 0.0053 1.2E-07 62.8 4.1 37 43-79 1-38 (274)
267 PRK05703 flhF flagellar biosyn 96.1 0.021 4.6E-07 62.0 9.0 38 44-81 222-263 (424)
268 PRK10416 signal recognition pa 96.1 0.0064 1.4E-07 63.5 4.7 41 41-81 112-154 (318)
269 PHA03136 thymidine kinase; Pro 96.0 0.013 2.8E-07 62.1 6.6 44 165-213 192-235 (378)
270 PHA02575 1 deoxynucleoside mon 96.0 0.0091 2E-07 59.0 5.0 27 44-71 1-27 (227)
271 PF07724 AAA_2: AAA domain (Cd 96.0 0.012 2.6E-07 55.9 5.7 39 43-81 3-44 (171)
272 PRK14974 cell division protein 96.0 0.0067 1.5E-07 63.8 4.3 41 40-80 137-179 (336)
273 PF13401 AAA_22: AAA domain; P 96.0 0.016 3.4E-07 51.4 6.1 27 42-68 3-29 (131)
274 cd01131 PilT Pilus retraction 95.9 0.0061 1.3E-07 59.1 3.5 24 45-68 3-26 (198)
275 cd01983 Fer4_NifH The Fer4_Nif 95.9 0.022 4.8E-07 46.9 6.4 24 45-68 1-24 (99)
276 TIGR00959 ffh signal recogniti 95.9 0.01 2.2E-07 64.4 5.4 40 41-80 97-139 (428)
277 TIGR00176 mobB molybdopterin-g 95.9 0.0057 1.2E-07 57.1 3.0 24 45-68 1-24 (155)
278 PRK10867 signal recognition pa 95.9 0.0072 1.6E-07 65.6 4.2 41 41-81 98-141 (433)
279 PRK12726 flagellar biosynthesi 95.9 0.031 6.8E-07 59.6 8.7 40 42-81 205-246 (407)
280 PRK05201 hslU ATP-dependent pr 95.8 0.0085 1.9E-07 64.5 4.3 38 43-81 50-87 (443)
281 COG1124 DppF ABC-type dipeptid 95.8 0.0063 1.4E-07 60.5 3.1 24 44-67 34-57 (252)
282 PRK13768 GTPase; Provisional 95.8 0.0089 1.9E-07 60.3 4.2 37 43-79 2-40 (253)
283 cd00820 PEPCK_HprK Phosphoenol 95.8 0.0073 1.6E-07 53.0 3.0 21 44-64 16-36 (107)
284 COG1136 SalX ABC-type antimicr 95.8 0.0072 1.6E-07 59.9 3.2 23 44-66 32-54 (226)
285 cd00009 AAA The AAA+ (ATPases 95.7 0.013 2.8E-07 51.6 4.5 24 44-67 20-43 (151)
286 TIGR00750 lao LAO/AO transport 95.7 0.01 2.3E-07 61.3 4.4 41 41-81 32-74 (300)
287 PRK14723 flhF flagellar biosyn 95.7 0.047 1E-06 63.0 9.9 38 43-80 185-226 (767)
288 KOG1969|consensus 95.7 0.069 1.5E-06 60.5 10.8 37 42-78 325-361 (877)
289 KOG1532|consensus 95.7 0.0095 2.1E-07 60.2 3.8 45 38-82 14-60 (366)
290 PRK10646 ADP-binding protein; 95.7 0.011 2.4E-07 55.1 3.9 28 43-70 28-55 (153)
291 COG1419 FlhF Flagellar GTP-bin 95.7 0.036 7.9E-07 59.1 8.2 39 43-81 203-245 (407)
292 PF01712 dNK: Deoxynucleoside 95.6 0.005 1.1E-07 56.9 1.3 60 165-228 68-128 (146)
293 TIGR01650 PD_CobS cobaltochela 95.6 0.012 2.6E-07 61.4 4.3 31 44-74 65-95 (327)
294 COG1341 Predicted GTPase or GT 95.6 0.013 2.9E-07 62.2 4.6 39 40-78 70-110 (398)
295 PLN02796 D-glycerate 3-kinase 95.6 0.0069 1.5E-07 63.6 2.4 42 305-346 186-234 (347)
296 TIGR00073 hypB hydrogenase acc 95.6 0.021 4.5E-07 55.7 5.6 37 42-78 21-58 (207)
297 PLN00020 ribulose bisphosphate 95.6 0.016 3.5E-07 61.3 5.1 40 41-81 146-185 (413)
298 PF05729 NACHT: NACHT domain 95.6 0.01 2.2E-07 54.4 3.2 24 45-68 2-25 (166)
299 TIGR02640 gas_vesic_GvpN gas v 95.5 0.014 3E-07 59.2 4.4 29 45-73 23-51 (262)
300 PRK06731 flhF flagellar biosyn 95.5 0.034 7.3E-07 56.8 7.1 91 42-156 74-166 (270)
301 TIGR00390 hslU ATP-dependent p 95.5 0.014 3.1E-07 62.7 4.5 31 42-72 46-76 (441)
302 PRK00771 signal recognition pa 95.5 0.013 2.9E-07 63.7 4.3 40 41-80 93-134 (437)
303 PF00931 NB-ARC: NB-ARC domain 95.5 0.08 1.7E-06 53.5 9.8 26 41-66 17-42 (287)
304 PF13173 AAA_14: AAA domain 95.5 0.017 3.8E-07 51.7 4.3 38 43-80 2-40 (128)
305 KOG3327|consensus 95.5 0.14 3.1E-06 49.1 10.4 132 42-186 4-145 (208)
306 PF01745 IPT: Isopentenyl tran 95.4 0.014 3E-07 57.2 3.8 38 43-83 1-40 (233)
307 COG4619 ABC-type uncharacteriz 95.4 0.01 2.2E-07 56.2 2.7 44 24-67 9-53 (223)
308 PRK14721 flhF flagellar biosyn 95.4 0.06 1.3E-06 58.3 8.9 40 42-81 190-233 (420)
309 PF05496 RuvB_N: Holliday junc 95.4 0.018 3.9E-07 57.0 4.4 29 44-72 51-79 (233)
310 KOG0707|consensus 95.4 0.2 4.4E-06 49.5 11.6 26 44-69 38-63 (231)
311 TIGR00382 clpX endopeptidase C 95.4 0.016 3.5E-07 62.6 4.3 29 44-72 117-145 (413)
312 PF00005 ABC_tran: ABC transpo 95.3 0.012 2.6E-07 52.8 2.8 24 44-67 12-35 (137)
313 PRK14494 putative molybdopteri 95.3 0.015 3.2E-07 58.0 3.7 26 43-68 1-26 (229)
314 PF13555 AAA_29: P-loop contai 95.3 0.019 4.2E-07 45.3 3.5 23 45-67 25-47 (62)
315 TIGR01166 cbiO cobalt transpor 95.3 0.013 2.9E-07 55.9 3.1 24 44-67 19-42 (190)
316 COG1219 ClpX ATP-dependent pro 95.3 0.017 3.6E-07 59.7 3.8 29 44-72 98-126 (408)
317 PRK14242 phosphate transporter 95.3 0.012 2.7E-07 58.8 3.0 26 43-68 32-57 (253)
318 TIGR03709 PPK2_rel_1 polyphosp 95.3 0.4 8.6E-06 48.8 13.7 80 167-247 163-248 (264)
319 cd01120 RecA-like_NTPases RecA 95.3 0.013 2.8E-07 53.2 2.8 24 45-68 1-24 (165)
320 PRK05342 clpX ATP-dependent pr 95.3 0.016 3.6E-07 62.6 4.0 29 44-72 109-137 (412)
321 cd03292 ABC_FtsE_transporter F 95.2 0.014 3.1E-07 56.7 3.2 25 43-67 27-51 (214)
322 TIGR00960 3a0501s02 Type II (G 95.2 0.014 3E-07 56.9 3.1 25 43-67 29-53 (216)
323 cd03114 ArgK-like The function 95.2 0.021 4.6E-07 52.9 4.2 34 45-78 1-36 (148)
324 PRK11784 tRNA 2-selenouridine 95.2 0.053 1.2E-06 57.3 7.6 105 44-184 142-255 (345)
325 cd03225 ABC_cobalt_CbiO_domain 95.2 0.014 3.1E-07 56.6 3.2 25 43-67 27-51 (211)
326 TIGR02673 FtsE cell division A 95.2 0.015 3.2E-07 56.6 3.2 25 43-67 28-52 (214)
327 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.2 0.015 3.2E-07 56.8 3.2 25 43-67 30-54 (218)
328 PF03266 NTPase_1: NTPase; In 95.2 0.016 3.5E-07 54.9 3.3 22 46-67 2-23 (168)
329 PRK06995 flhF flagellar biosyn 95.2 0.023 4.9E-07 62.5 4.8 38 43-80 256-297 (484)
330 PF10662 PduV-EutP: Ethanolami 95.2 0.015 3.4E-07 53.6 3.0 24 43-66 1-24 (143)
331 PF13191 AAA_16: AAA ATPase do 95.2 0.016 3.6E-07 54.2 3.3 29 40-68 21-49 (185)
332 TIGR03015 pepcterm_ATPase puta 95.2 0.018 3.9E-07 57.8 3.7 27 43-69 43-69 (269)
333 PF06309 Torsin: Torsin; Inte 95.1 0.027 5.8E-07 50.8 4.3 30 38-67 48-77 (127)
334 PRK13695 putative NTPase; Prov 95.1 0.017 3.7E-07 54.5 3.3 24 44-67 1-24 (174)
335 cd01130 VirB11-like_ATPase Typ 95.1 0.019 4E-07 55.1 3.5 26 43-68 25-50 (186)
336 cd03259 ABC_Carb_Solutes_like 95.1 0.016 3.6E-07 56.3 3.2 25 43-67 26-50 (213)
337 PF04665 Pox_A32: Poxvirus A32 95.1 0.023 5E-07 56.9 4.3 29 41-69 11-39 (241)
338 cd03256 ABC_PhnC_transporter A 95.1 0.016 3.5E-07 57.4 3.2 24 44-67 28-51 (241)
339 PRK10463 hydrogenase nickel in 95.1 0.031 6.7E-07 57.5 5.2 38 41-78 102-140 (290)
340 COG3911 Predicted ATPase [Gene 95.1 0.024 5.1E-07 52.5 3.9 28 41-69 7-34 (183)
341 cd03269 ABC_putative_ATPase Th 95.1 0.017 3.7E-07 56.1 3.2 25 43-67 26-50 (210)
342 TIGR03707 PPK2_P_aer polyphosp 95.1 0.19 4E-06 50.2 10.5 182 41-246 29-222 (230)
343 cd03293 ABC_NrtD_SsuB_transpor 95.1 0.017 3.7E-07 56.6 3.2 25 43-67 30-54 (220)
344 cd02034 CooC The accessory pro 95.1 0.029 6.4E-07 49.8 4.4 33 46-79 2-37 (116)
345 cd03263 ABC_subfamily_A The AB 95.1 0.017 3.7E-07 56.4 3.2 25 43-67 28-52 (220)
346 PF00910 RNA_helicase: RNA hel 95.1 0.016 3.6E-07 50.4 2.7 23 46-68 1-23 (107)
347 cd03224 ABC_TM1139_LivF_branch 95.0 0.017 3.6E-07 56.5 3.1 25 43-67 26-50 (222)
348 TIGR01241 FtsH_fam ATP-depende 95.0 0.057 1.2E-06 59.8 7.6 37 43-80 88-124 (495)
349 cd03235 ABC_Metallic_Cations A 95.0 0.016 3.5E-07 56.4 2.9 25 43-67 25-49 (213)
350 cd03222 ABC_RNaseL_inhibitor T 95.0 0.017 3.8E-07 55.1 3.1 25 43-67 25-49 (177)
351 cd03261 ABC_Org_Solvent_Resist 95.0 0.018 3.8E-07 57.1 3.2 24 44-67 27-50 (235)
352 cd04163 Era Era subfamily. Er 95.0 0.021 4.6E-07 51.6 3.5 23 43-65 3-25 (168)
353 COG0541 Ffh Signal recognition 95.0 0.13 2.8E-06 55.3 9.8 42 40-81 97-140 (451)
354 TIGR01242 26Sp45 26S proteasom 95.0 0.026 5.6E-07 59.9 4.6 33 43-75 156-188 (364)
355 cd03229 ABC_Class3 This class 95.0 0.019 4.2E-07 54.4 3.2 25 43-67 26-50 (178)
356 TIGR02881 spore_V_K stage V sp 95.0 0.023 5E-07 57.4 3.9 25 43-67 42-66 (261)
357 PRK03992 proteasome-activating 95.0 0.026 5.6E-07 60.6 4.5 32 43-74 165-196 (389)
358 cd03260 ABC_PstB_phosphate_tra 94.9 0.019 4.2E-07 56.4 3.2 25 43-67 26-50 (227)
359 cd03226 ABC_cobalt_CbiO_domain 94.9 0.019 4.2E-07 55.5 3.1 25 43-67 26-50 (205)
360 TIGR02211 LolD_lipo_ex lipopro 94.9 0.02 4.3E-07 56.1 3.2 25 43-67 31-55 (221)
361 TIGR02315 ABC_phnC phosphonate 94.9 0.019 4.2E-07 57.0 3.2 25 43-67 28-52 (243)
362 cd03265 ABC_DrrA DrrA is the A 94.9 0.02 4.3E-07 56.1 3.2 25 43-67 26-50 (220)
363 cd03264 ABC_drug_resistance_li 94.9 0.018 3.9E-07 56.0 2.9 23 45-67 27-49 (211)
364 PRK11629 lolD lipoprotein tran 94.9 0.02 4.3E-07 56.7 3.2 25 43-67 35-59 (233)
365 cd01129 PulE-GspE PulE/GspE Th 94.9 0.025 5.4E-07 57.5 4.0 25 44-68 81-105 (264)
366 cd03258 ABC_MetN_methionine_tr 94.9 0.02 4.3E-07 56.6 3.2 25 43-67 31-55 (233)
367 COG3840 ThiQ ABC-type thiamine 94.9 0.02 4.4E-07 54.8 3.0 23 44-66 26-48 (231)
368 cd03219 ABC_Mj1267_LivG_branch 94.9 0.018 4E-07 56.8 2.9 25 43-67 26-50 (236)
369 TIGR03608 L_ocin_972_ABC putat 94.9 0.021 4.5E-07 55.2 3.2 24 44-67 25-48 (206)
370 cd03296 ABC_CysA_sulfate_impor 94.9 0.02 4.4E-07 56.8 3.2 25 43-67 28-52 (239)
371 cd03262 ABC_HisP_GlnQ_permease 94.9 0.021 4.6E-07 55.4 3.2 25 43-67 26-50 (213)
372 TIGR03864 PQQ_ABC_ATP ABC tran 94.9 0.021 4.5E-07 56.6 3.2 25 43-67 27-51 (236)
373 cd03230 ABC_DR_subfamily_A Thi 94.8 0.022 4.8E-07 53.7 3.2 25 43-67 26-50 (173)
374 PF03215 Rad17: Rad17 cell cyc 94.8 0.029 6.4E-07 62.3 4.5 29 43-71 45-73 (519)
375 COG0802 Predicted ATPase or ki 94.8 0.029 6.2E-07 52.0 3.7 28 42-69 24-51 (149)
376 PRK06893 DNA replication initi 94.8 0.18 3.8E-06 50.1 9.6 24 44-67 40-63 (229)
377 PRK14495 putative molybdopteri 94.8 0.023 5E-07 61.4 3.5 27 43-69 1-27 (452)
378 cd03301 ABC_MalK_N The N-termi 94.8 0.023 4.9E-07 55.3 3.2 25 43-67 26-50 (213)
379 PHA02244 ATPase-like protein 94.8 0.031 6.8E-07 59.3 4.4 30 44-73 120-149 (383)
380 PRK14958 DNA polymerase III su 94.8 0.21 4.6E-06 55.5 11.2 28 43-70 38-65 (509)
381 cd03238 ABC_UvrA The excision 94.8 0.023 4.9E-07 54.3 3.1 22 43-64 21-42 (176)
382 cd03257 ABC_NikE_OppD_transpor 94.8 0.022 4.8E-07 55.8 3.1 25 43-67 31-55 (228)
383 COG1116 TauB ABC-type nitrate/ 94.7 0.024 5.2E-07 56.7 3.2 24 44-67 30-53 (248)
384 PRK10584 putative ABC transpor 94.7 0.024 5.2E-07 55.8 3.2 25 43-67 36-60 (228)
385 PRK11124 artP arginine transpo 94.7 0.024 5.1E-07 56.4 3.2 25 43-67 28-52 (242)
386 cd03223 ABCD_peroxisomal_ALDP 94.7 0.025 5.4E-07 53.2 3.2 25 43-67 27-51 (166)
387 TIGR01978 sufC FeS assembly AT 94.7 0.023 5E-07 56.3 3.1 24 44-67 27-50 (243)
388 TIGR01184 ntrCD nitrate transp 94.7 0.024 5.2E-07 56.1 3.2 24 44-67 12-35 (230)
389 PRK15177 Vi polysaccharide exp 94.7 0.024 5.2E-07 55.6 3.1 25 43-67 13-37 (213)
390 PRK14247 phosphate ABC transpo 94.7 0.024 5.1E-07 56.7 3.2 25 43-67 29-53 (250)
391 PF13479 AAA_24: AAA domain 94.7 0.029 6.3E-07 55.0 3.6 33 42-80 2-34 (213)
392 TIGR03410 urea_trans_UrtE urea 94.7 0.024 5.2E-07 55.9 3.1 25 43-67 26-50 (230)
393 cd03297 ABC_ModC_molybdenum_tr 94.7 0.025 5.4E-07 55.2 3.1 24 44-67 24-47 (214)
394 PRK14250 phosphate ABC transpo 94.7 0.025 5.4E-07 56.4 3.2 25 43-67 29-53 (241)
395 PRK10247 putative ABC transpor 94.7 0.025 5.5E-07 55.7 3.2 25 43-67 33-57 (225)
396 cd03232 ABC_PDR_domain2 The pl 94.6 0.026 5.6E-07 54.3 3.1 24 43-66 33-56 (192)
397 PRK11248 tauB taurine transpor 94.6 0.025 5.4E-07 57.0 3.2 25 43-67 27-51 (255)
398 PRK13541 cytochrome c biogenes 94.6 0.026 5.7E-07 54.3 3.2 25 43-67 26-50 (195)
399 PF13245 AAA_19: Part of AAA d 94.6 0.033 7.2E-07 45.7 3.3 24 44-67 11-35 (76)
400 cd03266 ABC_NatA_sodium_export 94.6 0.025 5.5E-07 55.1 3.2 25 43-67 31-55 (218)
401 cd01918 HprK_C HprK/P, the bif 94.6 0.026 5.7E-07 52.5 3.0 26 44-70 15-40 (149)
402 cd03245 ABCC_bacteriocin_expor 94.6 0.026 5.6E-07 55.2 3.2 25 43-67 30-54 (220)
403 PRK13540 cytochrome c biogenes 94.6 0.026 5.7E-07 54.5 3.2 25 43-67 27-51 (200)
404 COG4172 ABC-type uncharacteriz 94.6 0.065 1.4E-06 57.1 6.2 67 3-69 262-339 (534)
405 PF08477 Miro: Miro-like prote 94.6 0.031 6.7E-07 48.6 3.3 22 45-66 1-22 (119)
406 COG3640 CooC CO dehydrogenase 94.6 0.04 8.7E-07 54.7 4.4 36 44-79 1-39 (255)
407 COG1855 ATPase (PilT family) [ 94.6 0.024 5.3E-07 60.8 3.1 25 44-68 264-288 (604)
408 cd03218 ABC_YhbG The ABC trans 94.6 0.026 5.7E-07 55.6 3.2 25 43-67 26-50 (232)
409 PRK11264 putative amino-acid A 94.6 0.026 5.7E-07 56.3 3.2 25 43-67 29-53 (250)
410 cd03247 ABCC_cytochrome_bd The 94.6 0.027 5.9E-07 53.3 3.2 25 43-67 28-52 (178)
411 COG0466 Lon ATP-dependent Lon 94.6 0.037 7.9E-07 62.6 4.5 57 43-104 350-406 (782)
412 cd03246 ABCC_Protease_Secretio 94.6 0.028 6.2E-07 53.0 3.2 25 43-67 28-52 (173)
413 cd03214 ABC_Iron-Siderophores_ 94.6 0.028 6E-07 53.4 3.2 25 43-67 25-49 (180)
414 PRK10908 cell division protein 94.6 0.027 5.8E-07 55.2 3.2 25 43-67 28-52 (222)
415 PRK10744 pstB phosphate transp 94.6 0.027 5.8E-07 56.8 3.2 25 43-67 39-63 (260)
416 cd03268 ABC_BcrA_bacitracin_re 94.5 0.028 6.1E-07 54.5 3.2 25 43-67 26-50 (208)
417 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.5 0.028 6E-07 51.6 3.0 25 43-67 26-50 (144)
418 cd03252 ABCC_Hemolysin The ABC 94.5 0.027 5.9E-07 55.7 3.2 25 43-67 28-52 (237)
419 COG2884 FtsE Predicted ATPase 94.5 0.032 6.9E-07 53.8 3.4 27 42-68 27-53 (223)
420 KOG4622|consensus 94.5 0.22 4.9E-06 48.0 9.0 183 44-246 2-197 (291)
421 TIGR00972 3a0107s01c2 phosphat 94.5 0.028 6E-07 56.1 3.2 25 43-67 27-51 (247)
422 PRK14489 putative bifunctional 94.5 0.031 6.8E-07 59.5 3.7 28 42-69 204-231 (366)
423 PRK14269 phosphate ABC transpo 94.5 0.028 6.1E-07 56.1 3.2 24 44-67 29-52 (246)
424 TIGR02639 ClpA ATP-dependent C 94.5 0.3 6.4E-06 56.9 12.0 36 45-81 486-521 (731)
425 PRK14267 phosphate ABC transpo 94.5 0.028 6E-07 56.3 3.2 25 43-67 30-54 (253)
426 TIGR01189 ccmA heme ABC export 94.5 0.03 6.4E-07 54.0 3.2 25 43-67 26-50 (198)
427 PRK14241 phosphate transporter 94.5 0.028 6.2E-07 56.5 3.2 25 43-67 30-54 (258)
428 cd03234 ABCG_White The White s 94.5 0.029 6.2E-07 55.3 3.1 26 43-68 33-58 (226)
429 TIGR01277 thiQ thiamine ABC tr 94.5 0.029 6.4E-07 54.6 3.2 25 43-67 24-48 (213)
430 cd03216 ABC_Carb_Monos_I This 94.5 0.031 6.7E-07 52.4 3.2 25 43-67 26-50 (163)
431 cd03251 ABCC_MsbA MsbA is an e 94.5 0.029 6.3E-07 55.3 3.2 25 43-67 28-52 (234)
432 PRK10575 iron-hydroxamate tran 94.5 0.026 5.7E-07 57.0 2.9 25 43-67 37-61 (265)
433 PRK13539 cytochrome c biogenes 94.5 0.03 6.5E-07 54.4 3.2 25 43-67 28-52 (207)
434 TIGR02324 CP_lyasePhnL phospho 94.5 0.029 6.4E-07 55.0 3.2 25 43-67 34-58 (224)
435 PRK11701 phnK phosphonate C-P 94.5 0.029 6.3E-07 56.4 3.2 25 43-67 32-56 (258)
436 cd03298 ABC_ThiQ_thiamine_tran 94.5 0.03 6.5E-07 54.4 3.2 25 43-67 24-48 (211)
437 PRK10895 lipopolysaccharide AB 94.4 0.03 6.5E-07 55.6 3.2 25 43-67 29-53 (241)
438 TIGR00635 ruvB Holliday juncti 94.4 0.049 1.1E-06 56.0 4.9 28 44-71 31-58 (305)
439 PF03976 PPK2: Polyphosphate k 94.4 0.12 2.6E-06 51.5 7.4 35 42-76 30-64 (228)
440 cd03295 ABC_OpuCA_Osmoprotecti 94.4 0.03 6.6E-07 55.7 3.2 25 43-67 27-51 (242)
441 PRK14251 phosphate ABC transpo 94.4 0.03 6.5E-07 56.0 3.2 25 43-67 30-54 (251)
442 PTZ00454 26S protease regulato 94.4 0.047 1E-06 58.8 4.9 44 31-75 168-211 (398)
443 TIGR03771 anch_rpt_ABC anchore 94.4 0.03 6.5E-07 55.1 3.1 24 44-67 7-30 (223)
444 cd03244 ABCC_MRP_domain2 Domai 94.4 0.031 6.7E-07 54.7 3.2 25 43-67 30-54 (221)
445 TIGR02770 nickel_nikD nickel i 94.4 0.03 6.4E-07 55.4 3.1 26 43-68 12-37 (230)
446 PRK11247 ssuB aliphatic sulfon 94.4 0.03 6.5E-07 56.6 3.2 25 43-67 38-62 (257)
447 TIGR03005 ectoine_ehuA ectoine 94.4 0.03 6.4E-07 56.1 3.1 25 43-67 26-50 (252)
448 CHL00195 ycf46 Ycf46; Provisio 94.4 0.048 1E-06 60.3 4.9 38 43-81 259-296 (489)
449 PRK04195 replication factor C 94.4 0.03 6.5E-07 61.8 3.4 30 43-72 39-68 (482)
450 PRK14255 phosphate ABC transpo 94.4 0.03 6.6E-07 56.0 3.2 25 43-67 31-55 (252)
451 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.4 0.031 6.7E-07 55.4 3.2 25 43-67 29-53 (238)
452 cd03215 ABC_Carb_Monos_II This 94.4 0.031 6.8E-07 53.2 3.1 26 43-68 26-51 (182)
453 PRK13648 cbiO cobalt transport 94.4 0.03 6.6E-07 56.7 3.2 25 43-67 35-59 (269)
454 PRK13851 type IV secretion sys 94.4 0.026 5.7E-07 59.5 2.8 26 43-68 162-187 (344)
455 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.4 0.03 6.6E-07 55.2 3.1 25 43-67 48-72 (224)
456 TIGR02524 dot_icm_DotB Dot/Icm 94.4 0.033 7.2E-07 59.2 3.5 26 43-68 134-159 (358)
457 COG0542 clpA ATP-binding subun 94.4 0.71 1.5E-05 53.5 14.3 41 41-81 518-561 (786)
458 PRK09493 glnQ glutamine ABC tr 94.4 0.031 6.8E-07 55.4 3.2 25 43-67 27-51 (240)
459 PRK14265 phosphate ABC transpo 94.4 0.033 7.2E-07 56.7 3.4 26 43-68 46-71 (274)
460 cd03254 ABCC_Glucan_exporter_l 94.4 0.032 6.9E-07 54.9 3.2 24 44-67 30-53 (229)
461 cd01122 GP4d_helicase GP4d_hel 94.4 0.14 3E-06 51.7 7.9 34 44-78 31-68 (271)
462 KOG0741|consensus 94.4 0.044 9.6E-07 59.9 4.4 38 44-81 539-576 (744)
463 cd03248 ABCC_TAP TAP, the Tran 94.4 0.032 7E-07 54.8 3.2 26 42-67 39-64 (226)
464 COG0464 SpoVK ATPases of the A 94.4 0.094 2E-06 58.0 7.2 37 42-78 275-311 (494)
465 TIGR02323 CP_lyasePhnK phospho 94.4 0.032 6.9E-07 55.9 3.2 25 43-67 29-53 (253)
466 PTZ00361 26 proteosome regulat 94.4 0.053 1.2E-06 59.1 5.1 46 30-76 205-250 (438)
467 PRK14248 phosphate ABC transpo 94.3 0.032 7E-07 56.5 3.2 25 43-67 47-71 (268)
468 cd03228 ABCC_MRP_Like The MRP 94.3 0.035 7.5E-07 52.3 3.2 26 43-68 28-53 (171)
469 cd03283 ABC_MutS-like MutS-lik 94.3 0.034 7.3E-07 54.1 3.2 22 44-65 26-47 (199)
470 PRK10771 thiQ thiamine transpo 94.3 0.032 7E-07 55.1 3.1 25 43-67 25-49 (232)
471 PRK14245 phosphate ABC transpo 94.3 0.033 7.1E-07 55.7 3.2 25 43-67 29-53 (250)
472 PRK15056 manganese/iron transp 94.3 0.032 6.9E-07 56.7 3.1 25 43-67 33-57 (272)
473 PRK13538 cytochrome c biogenes 94.3 0.034 7.4E-07 53.9 3.2 25 43-67 27-51 (204)
474 PRK13543 cytochrome c biogenes 94.3 0.034 7.3E-07 54.4 3.2 25 43-67 37-61 (214)
475 PF01926 MMR_HSR1: 50S ribosom 94.3 0.037 8.1E-07 48.2 3.1 20 46-65 2-21 (116)
476 PRK14262 phosphate ABC transpo 94.3 0.034 7.3E-07 55.6 3.2 26 43-68 29-54 (250)
477 PRK14274 phosphate ABC transpo 94.3 0.034 7.4E-07 56.0 3.2 25 44-68 39-63 (259)
478 PRK14256 phosphate ABC transpo 94.3 0.034 7.4E-07 55.7 3.2 24 44-67 31-54 (252)
479 KOG0780|consensus 94.3 0.16 3.4E-06 53.8 8.0 51 28-81 89-141 (483)
480 CHL00131 ycf16 sulfate ABC tra 94.3 0.031 6.8E-07 55.8 2.9 24 43-66 33-56 (252)
481 cd03237 ABC_RNaseL_inhibitor_d 94.2 0.042 9.1E-07 55.2 3.8 26 42-67 24-49 (246)
482 PRK13645 cbiO cobalt transport 94.2 0.034 7.3E-07 57.0 3.1 24 44-67 38-61 (289)
483 PRK14238 phosphate transporter 94.2 0.035 7.6E-07 56.4 3.2 26 43-68 50-75 (271)
484 PRK14261 phosphate ABC transpo 94.2 0.035 7.5E-07 55.7 3.1 25 43-67 32-56 (253)
485 TIGR03708 poly_P_AMP_trns poly 94.2 0.26 5.7E-06 54.4 10.1 36 40-75 37-72 (493)
486 cd03233 ABC_PDR_domain1 The pl 94.2 0.032 7E-07 54.1 2.8 26 43-68 33-58 (202)
487 PRK11614 livF leucine/isoleuci 94.2 0.033 7.1E-07 55.2 2.9 25 43-67 31-55 (237)
488 PRK11300 livG leucine/isoleuci 94.2 0.034 7.4E-07 55.6 3.1 25 43-67 31-55 (255)
489 PRK14239 phosphate transporter 94.2 0.035 7.6E-07 55.5 3.1 24 43-66 31-54 (252)
490 PRK13632 cbiO cobalt transport 94.2 0.035 7.6E-07 56.4 3.1 25 43-67 35-59 (271)
491 PRK14240 phosphate transporter 94.2 0.036 7.8E-07 55.4 3.2 25 43-67 29-53 (250)
492 cd03267 ABC_NatA_like Similar 94.2 0.036 7.8E-07 55.1 3.2 25 43-67 47-71 (236)
493 PRK11831 putative ABC transpor 94.2 0.035 7.6E-07 56.3 3.1 25 43-67 33-57 (269)
494 PRK13638 cbiO cobalt transport 94.2 0.034 7.4E-07 56.4 3.0 25 43-67 27-51 (271)
495 PF06068 TIP49: TIP49 C-termin 94.2 0.084 1.8E-06 55.9 5.9 38 43-81 50-89 (398)
496 COG3842 PotA ABC-type spermidi 94.2 0.036 7.7E-07 58.6 3.1 23 44-66 32-54 (352)
497 cd03253 ABCC_ATM1_transporter 94.2 0.037 8.1E-07 54.7 3.2 25 43-67 27-51 (236)
498 PRK10619 histidine/lysine/argi 94.2 0.037 8E-07 55.6 3.2 25 43-67 31-55 (257)
499 TIGR02769 nickel_nikE nickel i 94.2 0.036 7.9E-07 56.0 3.1 24 44-67 38-61 (265)
500 PRK11022 dppD dipeptide transp 94.2 0.035 7.7E-07 58.1 3.1 25 44-68 34-58 (326)
No 1
>KOG4203|consensus
Probab=100.00 E-value=1.2e-44 Score=389.28 Aligned_cols=334 Identities=57% Similarity=0.905 Sum_probs=310.0
Q ss_pred ccccccccccccCCCCCCccCC-CCCCCEEEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEeecchhhhchhcHHH
Q psy9618 17 ILQSKTRTIYTAGRPPWYNKAG-EQVEPFVIGICGGSASGKTTVATKIIESLN-------VPWVTLLSMDSFYRVLNEEQ 88 (542)
Q Consensus 17 ~~~~~~~~~~~~~~ppw~~~~~-~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg-------~p~v~iIs~Ddfy~~l~~e~ 88 (542)
..+...++.|+.+.+||++... ....|++||+.|+++|||||++..+.+.++ .++++++++|.||+.++.++
T Consensus 17 ~~k~~~~~~~~~~~~p~~~~~~~~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~ 96 (473)
T KOG4203|consen 17 DFKASSRAGYRTLENPSSRAAIPEGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEE 96 (473)
T ss_pred hhHHHHHhhhcccCCcccccccccCcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHH
Confidence 4444557778899999997554 567899999999999999999999999999 89999999999999999999
Q ss_pred HHHHhccccCCCCCccccHHhHHHHHHHhHcCCeeccceechhhchhccc-ccccCCCcEEEEEccccccChhhhccCCE
Q psy9618 89 HKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETR-TKPMYGANVIIFEGILAFHNPQVLELLDM 167 (542)
Q Consensus 89 ~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v~~P~yd~~~~~~~~~-~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl 167 (542)
...+..+.++|++|++++++++...++.+++++.+.+|.|+|.+|.+... ...+++++++++||++++++.+.++++++
T Consensus 97 ~~~a~~~~~~f~~pda~~~~l~~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~ 176 (473)
T KOG4203|consen 97 LAKAQEGKYNFDHPDAFDFELLYLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTM 176 (473)
T ss_pred HHHhhhccccccCCCCcchhhHHHHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcc
Confidence 99998889999999999999999999999999999999999999999544 67789999999999999999999999999
Q ss_pred EEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 168 KVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 168 ~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
++||+++.+.+++|++.|++.++|++.+.++.||.+|++|+|..+++|+++.||++|+.+++|..+++.++++|++.|..
T Consensus 177 k~fvd~~~d~rla~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~n~vai~l~~~~i~~~L~~ 256 (473)
T KOG4203|consen 177 KLFVDTDADVRLARRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGDNDVAIDLIVQHILSILAE 256 (473)
T ss_pred eEEEecCcchhhHHHHhcchhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccccccccceeeehhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988774
Q ss_pred hHhhhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhhhhHHHHHHHHHhhCCCcchhhhhcccccccccccccccccccccc
Q psy9618 248 VLLMDATVATGAAAMMAIRILLDHDVLLMDATVATGAAAMMAIRILLDHDVPEGYIRRMWSVDVPIYNFVTHSRETRTKP 327 (542)
Q Consensus 248 k~~~~~~~~t~~~~~~~~~~~~~~~~~l~d~~~a~g~~~~~~~~~~~~~~~~~~~~~~g~~v~~P~y~f~~~~r~~~~~~ 327 (542)
+ +
T Consensus 257 ~-----------------------------------------------------------------------~------- 258 (473)
T KOG4203|consen 257 K-----------------------------------------------------------------------S------- 258 (473)
T ss_pred c-----------------------------------------------------------------------c-------
Confidence 1 0
Q ss_pred ccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCceeecccCCcchhhhhhhcccccCcchh
Q psy9618 328 MYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTAGNRTRVSRVLLRGFKLRPTLA 407 (542)
Q Consensus 328 ~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~rr~~Rd~~~r~~~~ 407 (542)
.+
T Consensus 259 ----------------------------------------------------~~-------------------------- 260 (473)
T KOG4203|consen 259 ----------------------------------------------------YV-------------------------- 260 (473)
T ss_pred ----------------------------------------------------cc--------------------------
Confidence 00
Q ss_pred ccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhcCCchH-------------------
Q psy9618 408 QSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKV------------------- 468 (542)
Q Consensus 408 ~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~Lp~~~------------------- 468 (542)
.++.|+..+++|||+++++|.+++..|++.+|+||+++++|++++++++++|+..
T Consensus 261 ------~l~~~~~~l~~t~~i~~~~t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~ 334 (473)
T KOG4203|consen 261 ------RLYNNVLSLPDTNQIKGKLTLLRDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPRGLAYSGVNFCKQ 334 (473)
T ss_pred ------cccccceecCCccccCCceeEeecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEecccccchhcccccch
Confidence 2455777899999999999999999999999999999999999999999999976
Q ss_pred --------------------------------------------------------------------------------
Q psy9618 469 -------------------------------------------------------------------------------- 468 (542)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (542)
T Consensus 335 i~gv~i~r~g~~~~~alr~~~~~vri~~il~qr~~~t~~~~l~~~~lP~~is~~V~ll~p~~~tg~~~~~a~~~ll~~gv 414 (473)
T KOG4203|consen 335 ICGVSIPRSGESMETALRAACKGVRIGKILIQRDEETGEPELHYEKLPKDISDRVLLLDPVLATGNSAMMAIILLLDHGV 414 (473)
T ss_pred hccCCCCcchhHHHHHHHHHcCCceeeeeEeechhhccchhhhhhhCccccccceeeecchhhcchhHHHHHHHHHhCCC
Confidence
Q ss_pred ---------------HHHHHHHhCCCCEEEEeecCCCCCCCCceecCCCcccccccCCC
Q psy9618 469 ---------------SIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512 (542)
Q Consensus 469 ---------------G~~~~~~~~p~v~i~t~~iD~~l~~~~~i~PGlGd~gdr~~gt~ 512 (542)
|+++++.+||.+++||+++|+.+|+++|++||+|||||||||+.
T Consensus 415 ~~~~i~~~~ll~~~~~~~~~~~~f~~v~~v~~~~d~~~~~~~~~~pg~g~~~dryfg~~ 473 (473)
T KOG4203|consen 415 PEENIIFLNLLAAPQGIHEVAYAFPKVKIVTSQIDKLLNEKRYVVPGLGNFGDRYFGTD 473 (473)
T ss_pred cHHHhHHHHHHhhhhhhhHHHHhcccceeehhhhcccccccceECcccccchhhccCCC
Confidence 99999999999999999999999999999999999999999983
No 2
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=313.87 Aligned_cols=204 Identities=49% Similarity=0.838 Sum_probs=191.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
.++.+|||+|+|||||||+|+.|++.|+...+.+|+.|+||+ ..+.......+.++|++|+++|++++.+.|+.|++|
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk--~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g 83 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYK--DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQG 83 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccccc--chhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcC
Confidence 456999999999999999999999999988899999999998 566667777889999999999999999999999999
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHH
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQ 200 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q 200 (542)
+.+..|.|+|.+|.+..+...+.+.+|||+||++++.++++++++|++|||++|.|+|+.||+.||..+||++.+.+++|
T Consensus 84 ~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~q 163 (218)
T COG0572 84 KPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQ 163 (218)
T ss_pred CcccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 201 YVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 201 ~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
|...++|.|++|++|++++||++||.++.|..+++.+...|...+.
T Consensus 164 y~~~vkp~~~~fIeptk~~ADiiip~~~~n~vav~~l~~~I~~~~~ 209 (218)
T COG0572 164 YVKTVRPMYEQFIEPTKKYADIIIPSGGKNEVAVDLLQAKIASSLS 209 (218)
T ss_pred HHHhhChhhhhccCcccccceEEeecCCcceeehhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999887777766544
No 3
>PTZ00301 uridine kinase; Provisional
Probab=100.00 E-value=3.1e-35 Score=287.07 Aligned_cols=203 Identities=37% Similarity=0.637 Sum_probs=182.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL----NVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRL 117 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L----g~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~l 117 (542)
+.++|||+|+|||||||+|+.|+++| +-..+.++++|+||+.. .+......+.++|++|+++|+++|.+.|+.+
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~--~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L 79 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQ--SNIPESERAYTNYDHPKSLEHDLLTTHLREL 79 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCc--ccCCHHHhcCCCCCChhhhCHHHHHHHHHHH
Confidence 35899999999999999999998887 33345688999999742 2333334456899999999999999999999
Q ss_pred HcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHH
Q psy9618 118 KEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGV 197 (542)
Q Consensus 118 k~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~v 197 (542)
++|+.+..|.|+|..+.+......+.+.+++|+||++++..+.+++++|++|||+++.++++.||++|+..+||++.+.+
T Consensus 80 ~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v 159 (210)
T PTZ00301 80 KSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESV 159 (210)
T ss_pred HcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHH
Confidence 99999999999999998876666677789999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 198 IKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 198 l~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
+.+|.+.+.|.+.+|++|++..||+||+++++|.+++..+..+|...|+
T Consensus 160 ~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~~~~~ 208 (210)
T PTZ00301 160 IEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLNHDLE 208 (210)
T ss_pred HHHHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999988775
No 4
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.98 E-value=6.1e-32 Score=260.87 Aligned_cols=187 Identities=42% Similarity=0.759 Sum_probs=160.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCe------EEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhH
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPW------VTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLK 118 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~------v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk 118 (542)
||||+|+|||||||+|+.|++.|+... +.++++|+||+..............++|++|+++|++++.+.|..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 799999999999999999999997432 45778999997654444444444578899999999999999999999
Q ss_pred cCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHH
Q psy9618 119 EGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVI 198 (542)
Q Consensus 119 ~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl 198 (542)
+|+.+..|.|+|..+.+........+.++||+||++++..+.+++++|++|||+++.++++.|++.||..+||++.+.++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~~ 160 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEVI 160 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHHH
T ss_pred CCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeEE
Confidence 99999999999999988764455567899999999999888899999999999999999999999999999999999999
Q ss_pred HHHHhhccchhhccccCCCCcccEEEECCCCCHH
Q psy9618 199 KQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCV 232 (542)
Q Consensus 199 ~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ 232 (542)
++|. .+.|.|.+|+.|+++.||+||+++.+|..
T Consensus 161 ~~~~-~~~~~~~~~I~p~~~~ADivi~~~~~~~~ 193 (194)
T PF00485_consen 161 AQYE-RVRPGYERYIEPQKERADIVIPSGPTNDI 193 (194)
T ss_dssp HHHH-THHHHHHHCTGGGGGG-SEEEESCTSSHH
T ss_pred EEee-cCChhhhhheeccccccEEEECCCCCccc
Confidence 9999 89999999999999999999999877643
No 5
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.96 E-value=3.9e-29 Score=243.71 Aligned_cols=204 Identities=45% Similarity=0.778 Sum_probs=179.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
.++.+|+|+|+|||||||+++.|++.|+...+.++++|+||+... ..........+|++|.++|++.+.+.|..++++
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 81 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQS--HLSFEERVKTNYDHPDAFDHDLLIEHLKALKAG 81 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcc--cCCHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence 468999999999999999999999999766677899999997422 122223445678999999999999999999999
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHH
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQ 200 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q 200 (542)
+.+..|.|++.++.+........+.+++|+||++++..+.+.+++|++|||++|.+++++|+++|+...+|++.+.++.+
T Consensus 82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~ 161 (209)
T PRK05480 82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQ 161 (209)
T ss_pred CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHH
Confidence 99999999999998765555566778999999999977788899999999999999999999999998899999999999
Q ss_pred HHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 201 YVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 201 ~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
|...+.|.|..++++.++.||+||+++++|..+++.+.++|...++
T Consensus 162 ~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~~~ 207 (209)
T PRK05480 162 YLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQLLE 207 (209)
T ss_pred HHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998889999998888877654
No 6
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.96 E-value=2.1e-29 Score=250.83 Aligned_cols=183 Identities=23% Similarity=0.320 Sum_probs=154.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhhchhcHHHH---HHHhccccCCCC--CccccHHhHHHHHHHh
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVLNEEQH---KKAAQNEYNFDH--PDAFDFELLLPTLQRL 117 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy~~l~~e~~---~~~~~~~~~fd~--p~a~D~~lL~~~L~~l 117 (542)
+|||+|+|||||||++++|++.|+.. .+.+|+.|+||+....+.. ..+.....+|+| |+++|+++|.+.++.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 69999999999999999999988632 3678999999983222221 233445689999 9999999999999999
Q ss_pred HcCCeeccceechhh-----chhcc----ccc-ccCCCcEEEEEccc---cccChhhhccCCEEEEEECCHHHHHHHhhh
Q psy9618 118 KEGKKVDVPIYNFVT-----HSRET----RTK-PMYGANVIIFEGIL---AFHNPQVLELLDMKVFVDTDADVRLARRLK 184 (542)
Q Consensus 118 k~g~~v~~P~yd~~~-----~~~~~----~~~-~~~~~~vVIvEGi~---~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~ 184 (542)
++|+.+..|.|++.. |.+.. .|. ...+.+++|+||++ .+.+.++++++|++|||+++.++++.|++.
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI~ 160 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKIH 160 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHHH
Confidence 999999999998732 33221 222 24789999999998 455678999999999999999999999999
Q ss_pred cchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCC
Q psy9618 185 RDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGG 228 (542)
Q Consensus 185 Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~ 228 (542)
||..+||++.+.+++||.+++ |+|.+|+.|+++.||+++..-.
T Consensus 161 RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr~p 203 (277)
T cd02029 161 RDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQRVP 203 (277)
T ss_pred hhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEeccC
Confidence 999999999999999999999 9999999999999999998653
No 7
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.95 E-value=2.1e-28 Score=264.84 Aligned_cols=197 Identities=32% Similarity=0.530 Sum_probs=174.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
..+++|||+|+|||||||+|+.|+..+ +.+.+|++|+|++. . ....++|++|+++|++.+.+.|..|++|
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL--p~vgvIsmDdy~~~--~------~~i~~nfD~P~a~D~d~L~enL~~Lr~G 132 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVISMDNYNDS--S------RIIDGNFDDPRLTDYDTLLDNIHDLKAG 132 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC--CCcEEEEEcceecc--h------hhhCccCCChhhcchhHHHHHHHHHhCC
Confidence 457899999999999999999999987 46778899999742 1 1234789999999999999999999999
Q ss_pred Ceeccceechhhchhccc-ccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHH
Q psy9618 121 KKVDVPIYNFVTHSRETR-TKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIK 199 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~-~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~ 199 (542)
+.+.+|.|||.+|.+... .....+.++||+||++++. +.+++++|++|||+++.+.++.||+.||..++|++.+.++.
T Consensus 133 ksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~-~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~ 211 (656)
T PLN02318 133 KSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALS-EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIH 211 (656)
T ss_pred CceecCccccccCcccCCceeecCCCcEEEEechhhcc-HhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999987643 4556788999999999995 78999999999999999999999999999999999999999
Q ss_pred HHHhhccchhhccccCCCCcccEEEEC------CCCCHHHH-----HHHHHHHHHHHHHh
Q psy9618 200 QYVNMVKPAFSTFIAPSMVHADIIVPR------GGENCVAI-----DLIVQHIHSQLQAV 248 (542)
Q Consensus 200 q~~~~v~p~y~~~i~p~~~~ADiVI~~------~~~n~~ai-----~~iv~~I~~~L~~k 248 (542)
+|.++++|.|..|++|+++.||+||.+ +.+|..++ +..++||+..|.++
T Consensus 212 q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~ 271 (656)
T PLN02318 212 QISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVLSED 271 (656)
T ss_pred HHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHhhhc
Confidence 999999999999999999999999965 34677766 88999999999863
No 8
>PLN02348 phosphoribulokinase
Probab=99.95 E-value=1.2e-27 Score=249.99 Aligned_cols=184 Identities=26% Similarity=0.482 Sum_probs=157.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHcCC-----------------CeEEeecchhhhchhcHHHHHHHhccccCCCC
Q psy9618 39 EQVEPFVIGICGGSASGKTTVATKIIESLNV-----------------PWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH 101 (542)
Q Consensus 39 ~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~-----------------p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~ 101 (542)
+..++++|||+|+|||||||+|+.|++.||. ..+.+|++|+||+. ..+.+ . ....++.+
T Consensus 45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~-dr~~r--~-~~g~t~ld 120 (395)
T PLN02348 45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSL-DRTGR--K-EKGVTALD 120 (395)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCC-ChhhH--h-hcCCccCC
Confidence 4567899999999999999999999999973 24678999999863 22221 1 22334567
Q ss_pred CccccHHhHHHHHHHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHH
Q psy9618 102 PDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLAR 181 (542)
Q Consensus 102 p~a~D~~lL~~~L~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~R 181 (542)
|.++|++++.+.|+.|++|+.+..|.|++.++.... ...+.+.++||+||++++..+.+++++|++|||+++.++++.|
T Consensus 121 P~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~-~e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~R 199 (395)
T PLN02348 121 PRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP-PELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAW 199 (395)
T ss_pred cccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCC-cEEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHH
Confidence 999999999999999999999999999999987543 3456778999999999988878999999999999999999999
Q ss_pred hhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCC
Q psy9618 182 RLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGG 228 (542)
Q Consensus 182 rl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~ 228 (542)
+++|+..+||.+.+.+..++.. ..|.|..|+.|+++.||+||..-.
T Consensus 200 RI~RD~~eRG~S~EeV~~~i~a-r~pd~~~yI~pqk~~ADiVI~v~p 245 (395)
T PLN02348 200 KIQRDMAERGHSLESIKASIEA-RKPDFDAYIDPQKQYADVVIEVLP 245 (395)
T ss_pred HHHhhHhhcCCCHHHHHHHHHh-cCcchhhhcccccccCCEEEEecC
Confidence 9999999999999999988765 689999999999999999998653
No 9
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.95 E-value=3e-27 Score=230.42 Aligned_cols=203 Identities=43% Similarity=0.760 Sum_probs=176.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
+...+|+|+|++||||||+++.|+..++...+.++++|+||... ..........+.|+.|++++++.+.+.|+.+++|
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g 81 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQ--SHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNG 81 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccCh--hhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCC
Confidence 34689999999999999999999999875456678999998642 2223344556789999999999999999999999
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHH
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQ 200 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q 200 (542)
+.+.+|.|++..+.+........+..++|+||++++..+.+.+.+|++|||+++.++++.|+++|+...+|++.+.+..+
T Consensus 82 ~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~ 161 (207)
T TIGR00235 82 SPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQ 161 (207)
T ss_pred CCEecccceeecCCCCCceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 99999999999887755544556789999999998766678889999999999999999999999998899999999999
Q ss_pred HHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHH
Q psy9618 201 YVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQL 245 (542)
Q Consensus 201 ~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L 245 (542)
|....++.|..++.+.+..||+||+++++++.++..+.+.|+..+
T Consensus 162 ~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T TIGR00235 162 YRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIKHLL 206 (207)
T ss_pred HHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998888887543
No 10
>PRK15453 phosphoribulokinase; Provisional
Probab=99.95 E-value=7.7e-27 Score=234.26 Aligned_cols=186 Identities=22% Similarity=0.318 Sum_probs=153.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhhchhcHH---HHHHHhccccCCCC--CccccHHhHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVLNEE---QHKKAAQNEYNFDH--PDAFDFELLLPT 113 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy~~l~~e---~~~~~~~~~~~fd~--p~a~D~~lL~~~ 113 (542)
+++.+|+|+|+|||||||+|+.|++.|+.. .+.+|++|+||+.-..+ ....+.....+|++ |+++|+++|.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~ 82 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL 82 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 456899999999999999999999988633 35678999999731111 11223344458999 999999999999
Q ss_pred HHHhHcCCeeccceechh-----hchhcc----ccccc-CCCcEEEEEccccc---cChhhhccCCEEEEEECCHHHHHH
Q psy9618 114 LQRLKEGKKVDVPIYNFV-----THSRET----RTKPM-YGANVIIFEGILAF---HNPQVLELLDMKVFVDTDADVRLA 180 (542)
Q Consensus 114 L~~lk~g~~v~~P~yd~~-----~~~~~~----~~~~~-~~~~vVIvEGi~~~---~~~~l~~l~Dl~IfLdad~d~rl~ 180 (542)
|+.++++..+..|.|+.. .|.+.. .|..+ .+.+++|+||++.+ ...+++.++|++|||+++.++++.
T Consensus 83 l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~i 162 (290)
T PRK15453 83 FREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWI 162 (290)
T ss_pred HHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHH
Confidence 999999998888988632 244432 23344 57899999999876 446789999999999999999999
Q ss_pred HhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECC
Q psy9618 181 RRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRG 227 (542)
Q Consensus 181 Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~ 227 (542)
|+++||..+||++.+.+++||.++. |+|.+||.|++++||+++..-
T Consensus 163 rRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfqrv 208 (290)
T PRK15453 163 QKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQRV 208 (290)
T ss_pred HHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEEeC
Confidence 9999999999999999999999986 999999999999999998763
No 11
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.94 E-value=1.1e-26 Score=224.56 Aligned_cols=197 Identities=58% Similarity=0.961 Sum_probs=171.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCeec
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVD 124 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v~ 124 (542)
+|||+|++||||||+++.|+..|+...+.++++|+||+.+...... ......|+.|.+++++.+.+.|..++.++.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 78 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELE--ERKNNNYDHPDAFDFDLLISHLQDLKNGKSVE 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHH--HhccCCCCCCCcccHHHHHHHHHHHHCCCCEe
Confidence 6899999999999999999999865567789999999865543322 23345678899999999999999999999999
Q ss_pred cceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhh
Q psy9618 125 VPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNM 204 (542)
Q Consensus 125 ~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~ 204 (542)
.|.|++..+.+......+.+..++|+||.+++..+.+.+.+|++|||++|.+++++|++.|+..+||++.+.....|...
T Consensus 79 ~p~~d~~~~~~~~~~~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~ 158 (198)
T cd02023 79 IPVYDFKTHSRLKETVTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKF 158 (198)
T ss_pred ccccccccCcccCCceecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHh
Confidence 99999999987654445667899999999999877888999999999999999999999999888999999999999999
Q ss_pred ccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHH
Q psy9618 205 VKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 205 v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~ 243 (542)
..+.|..++.++++.||+||+++.++..++..++++++.
T Consensus 159 ~~~~~~~~i~~~~~~aD~ii~~~~~~~~~~~~~~~~~~~ 197 (198)
T cd02023 159 VKPMHEQFIEPTKRYADVIIPRGGDNHVAIDLIVQHIKS 197 (198)
T ss_pred hhhhHHHhCccchhceeEEECCCCCccHHHHHHHHHHhc
Confidence 999999999999999999999998887888888877753
No 12
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.94 E-value=2.6e-26 Score=226.10 Aligned_cols=183 Identities=26% Similarity=0.417 Sum_probs=147.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhhhchhcHHHHHHHhcccc-CCCCCccccHHhHHHHHHHhHc
Q psy9618 45 VIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYRVLNEEQHKKAAQNEY-NFDHPDAFDFELLLPTLQRLKE 119 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg----~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~-~fd~p~a~D~~lL~~~L~~lk~ 119 (542)
||||+|++||||||+|+.|+..|. -..+.+|++|+||.. ..++.. .+.. .++.|+++|++++.+.|+.++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~--~~~~~~--~~~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYP--NKELIE--RGLMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCc--HHHHHH--hhhhhcCCCcccCCHHHHHHHHHHHHC
Confidence 689999999999999999999994 345778999999974 222221 1111 3556999999999999999999
Q ss_pred -CCeeccceechhhchhcccccc-cCCCcEEEEEccccccChh-----hhccCCEEEEEECCHHHHHHHhhhc---chhh
Q psy9618 120 -GKKVDVPIYNFVTHSRETRTKP-MYGANVIIFEGILAFHNPQ-----VLELLDMKVFVDTDADVRLARRLKR---DILA 189 (542)
Q Consensus 120 -g~~v~~P~yd~~~~~~~~~~~~-~~~~~vVIvEGi~~~~~~~-----l~~l~Dl~IfLdad~d~rl~Rrl~R---d~~~ 189 (542)
++.+.+|.||+..+.+...... ..+.++||+||++++..+. +.+++|++|||++|.+++.+|+++| +..+
T Consensus 77 g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~ 156 (220)
T cd02025 77 GKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRET 156 (220)
T ss_pred CCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999987655433 5678999999999998765 8899999999999999986665555 4455
Q ss_pred hcCCHHHHHH----------------HHHhhccchhhccccCCCCcccEEEECCCCCH
Q psy9618 190 RGRDLEGVIK----------------QYVNMVKPAFSTFIAPSMVHADIIVPRGGENC 231 (542)
Q Consensus 190 rgr~~~~vl~----------------q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~ 231 (542)
+|++...++. +|.+.++|.+++|+.|+++.||+||+.+.++.
T Consensus 157 ~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~~~ 214 (220)
T cd02025 157 AFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADHS 214 (220)
T ss_pred HHhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCCCc
Confidence 6666665444 47788999999999999999999999887654
No 13
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.93 E-value=7.1e-26 Score=216.21 Aligned_cols=174 Identities=34% Similarity=0.495 Sum_probs=145.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
+|+|+|+|||||||+|+.|++.|+. ..+.+|++|+||+.. .. ......+|+++..+|++++.+.|..+++++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~---~~--~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~ 75 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR---KT--PRDEDGNYDFESILDLDLLNKNLHDLLNGKE 75 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc---cc--ccccCCCCCCCccccHHHHHHHHHHHHCCCe
Confidence 6899999999999999999999852 346789999999854 11 1122345677888999999999999999999
Q ss_pred eccceechhhchhccc-ccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHH-HHHHhhhcchhhhcCCHHHHHHH
Q psy9618 123 VDVPIYNFVTHSRETR-TKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADV-RLARRLKRDILARGRDLEGVIKQ 200 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~-~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~-rl~Rrl~Rd~~~rgr~~~~vl~q 200 (542)
+.+|.||+.++.+... .....+.++||+||++++. +.+++++|++|||+++.++ ++.|++.||..+||++.+.++.+
T Consensus 76 ~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~-~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~ 154 (179)
T cd02028 76 VELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALN-ERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILM 154 (179)
T ss_pred eecccceeECCccCCCceEEeCCCCEEEEecHHhcC-HhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhh
Confidence 9999999999987653 3456788999999999985 6899999999999999998 99999999999999999999999
Q ss_pred HHhhccchhhccccCCCCcccEEEE
Q psy9618 201 YVNMVKPAFSTFIAPSMVHADIIVP 225 (542)
Q Consensus 201 ~~~~v~p~y~~~i~p~~~~ADiVI~ 225 (542)
| ..+.+.+..++.|+++.||+|++
T Consensus 155 ~-~~~~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 155 W-PSVPSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred c-ccccCchhhcCCCchhccceecc
Confidence 5 44444444555778999999985
No 14
>PRK05439 pantothenate kinase; Provisional
Probab=99.93 E-value=1.5e-25 Score=229.81 Aligned_cols=190 Identities=25% Similarity=0.398 Sum_probs=153.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchhhhchhcHHHHHHHhccc-cCCCCCccccHHhHHHH
Q psy9618 39 EQVEPFVIGICGGSASGKTTVATKIIESLNV----PWVTLLSMDSFYRVLNEEQHKKAAQNE-YNFDHPDAFDFELLLPT 113 (542)
Q Consensus 39 ~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~----p~v~iIs~Ddfy~~l~~e~~~~~~~~~-~~fd~p~a~D~~lL~~~ 113 (542)
..+.|++|||+|++||||||+|+.|++.|+. +.+.+|++|+||+.. .++.. .+. ..++.|+++|++++.+.
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~--~~l~~--~~l~~~kg~Pes~D~~~l~~~ 157 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPN--AVLEE--RGLMKRKGFPESYDMRALLRF 157 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCH--HHHhh--hhccccCCCcccccHHHHHHH
Confidence 4567899999999999999999999998852 457889999999742 22221 122 23677999999999999
Q ss_pred HHHhHcCCe-eccceechhhchhcc-cccccCCCcEEEEEccccccChhh------hccCCEEEEEECCHHHHHHHhhhc
Q psy9618 114 LQRLKEGKK-VDVPIYNFVTHSRET-RTKPMYGANVIIFEGILAFHNPQV------LELLDMKVFVDTDADVRLARRLKR 185 (542)
Q Consensus 114 L~~lk~g~~-v~~P~yd~~~~~~~~-~~~~~~~~~vVIvEGi~~~~~~~l------~~l~Dl~IfLdad~d~rl~Rrl~R 185 (542)
|..+++|+. +.+|.||+.++.+.. +...+.+.++||+||++++..+.. .+++|++|||+++.+.+.+|++.|
T Consensus 158 L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R 237 (311)
T PRK05439 158 LSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIER 237 (311)
T ss_pred HHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHH
Confidence 999999986 999999999998763 445567889999999998865554 899999999999999998888887
Q ss_pred chhh---------------hcCCHH----HHHHHHHhhccchhhccccCCCCcccEEEECCCCCHH
Q psy9618 186 DILA---------------RGRDLE----GVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCV 232 (542)
Q Consensus 186 d~~~---------------rgr~~~----~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ 232 (542)
.... .|.+.+ .+..+|.....|.+.++|.|++..||+||..+.++.+
T Consensus 238 ~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~~h~i 303 (311)
T PRK05439 238 FLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADHSI 303 (311)
T ss_pred HHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCCCCce
Confidence 6542 233333 4555788889999999999999999999999886654
No 15
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.92 E-value=1.6e-24 Score=220.81 Aligned_cols=189 Identities=23% Similarity=0.365 Sum_probs=150.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHH
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQ 115 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg----~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~ 115 (542)
.+.|++|||+|++||||||+|+.|...+. -..+.++++|+||+.. ..+... .....++.|+++|.+.+.+.|+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~--~~l~~~-g~~~~~g~P~s~D~~~l~~~L~ 135 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPN--QVLKER-NLMKKKGFPESYDMHRLVKFLS 135 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccH--HHHHHc-CCccccCCChhccHHHHHHHHH
Confidence 46789999999999999999999988775 2357789999999742 222221 1224567899999999999999
Q ss_pred HhHcCCe-eccceechhhchhccc-ccccCCCcEEEEEccccccChh----------hhccCCEEEEEECCHHHHHHHhh
Q psy9618 116 RLKEGKK-VDVPIYNFVTHSRETR-TKPMYGANVIIFEGILAFHNPQ----------VLELLDMKVFVDTDADVRLARRL 183 (542)
Q Consensus 116 ~lk~g~~-v~~P~yd~~~~~~~~~-~~~~~~~~vVIvEGi~~~~~~~----------l~~l~Dl~IfLdad~d~rl~Rrl 183 (542)
.++.|+. +.+|.||+.+|.+... .....+.+++|+||++++..+. +.+++|++|||+||.+++.+|++
T Consensus 136 ~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i 215 (290)
T TIGR00554 136 DLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYI 215 (290)
T ss_pred HHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHH
Confidence 9999985 9999999999988654 3445788999999999987655 46899999999999999999988
Q ss_pred hcchhhh---------------cCCH----HHHHHHHHhhccchhhccccCCCCcccEEEECCCCCH
Q psy9618 184 KRDILAR---------------GRDL----EGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENC 231 (542)
Q Consensus 184 ~Rd~~~r---------------gr~~----~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~ 231 (542)
+|...-+ +.+. .....+|.+...|.+.++|.|++..||+|+..+.+..
T Consensus 216 ~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~~h~ 282 (290)
T TIGR00554 216 NRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGANHA 282 (290)
T ss_pred HHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCCCCc
Confidence 8854221 2222 2344567888999999999999999999999887543
No 16
>PLN02541 uracil phosphoribosyltransferase
Probab=99.91 E-value=9.5e-25 Score=216.40 Aligned_cols=96 Identities=33% Similarity=0.548 Sum_probs=91.3
Q ss_pred CCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhc-CCchH--------------------------
Q psy9618 416 PEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSL-LPFKV-------------------------- 468 (542)
Q Consensus 416 ~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~-Lp~~~-------------------------- 468 (542)
.++++++++|||+++++|+|||++|++.+|++|++|++++|++||+.. ||+++
T Consensus 30 ~~~~~~~~~~p~i~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~Ea~~~~lp~~~~~V~TP~g~~~~~~~~~~~~i~~V~I 109 (244)
T PLN02541 30 QQMLVFVPPHPLIKHWLSVLRNEQTPPPIFRSAMAELGRLLIYEASRDWLPTMTGEVQTPMGVADVEFIDPREPVAVVPI 109 (244)
T ss_pred ccceEEecCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccceEEECCCCeEEEEeecCCCcEEEEeE
Confidence 346788999999999999999999999999999999999999999865 98765
Q ss_pred --------------------------------------------------------------------------------
Q psy9618 469 -------------------------------------------------------------------------------- 468 (542)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (542)
T Consensus 110 LRAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~ 189 (244)
T PLN02541 110 LRAGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQ 189 (244)
T ss_pred eCCcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCCCCEEEEECcchhhhHHHHHHHHHHHHcCCCccc
Confidence
Q ss_pred -----------HHHHHHHhCCCCEEEEeecCCCCCCCCceecCCCcccccccCC
Q psy9618 469 -----------SIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGT 511 (542)
Q Consensus 469 -----------G~~~~~~~~p~v~i~t~~iD~~l~~~~~i~PGlGd~gdr~~gt 511 (542)
||+++.++||+|+||||+||++||+++||+|||||||||||||
T Consensus 190 I~~v~~ias~~Gl~~i~~~fP~v~I~ta~ID~~Lne~~yIvPGlGDaGDR~fGt 243 (244)
T PLN02541 190 IRVVCAVAAPPALKKLSEKFPGLHVYAGIIDEEVNEKGYIVPGLGDAGDRSFGT 243 (244)
T ss_pred EEEEEEEECHHHHHHHHHHCcCCEEEEEEECccccCCCcCcCCCCCccccccCC
Confidence 9999999999999999999999999999999999999999998
No 17
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.91 E-value=1.7e-24 Score=211.22 Aligned_cols=93 Identities=37% Similarity=0.577 Sum_probs=90.0
Q ss_pred ceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhcCCchH-----------------------------
Q psy9618 418 ALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKV----------------------------- 468 (542)
Q Consensus 418 nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~Lp~~~----------------------------- 468 (542)
||||++ |||+++++|+|||++|++.+|+++++|++++|++||+++||+++
T Consensus 1 ~v~~~~-~p~~~~~lt~lRd~~t~~~~Fr~~~~rl~~~l~~ea~~~l~~~~~~v~tp~g~~~~~~~~~~~i~~V~ILrgg 79 (207)
T TIGR01091 1 MVVVIE-HPLIKHKLTLLRDKNTDTKEFRELLRELGRLLAYEATRDLELEEVEVETPLGETEGGRILGKKIVLVPILRAG 79 (207)
T ss_pred CeEecC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcEEEeEecCCcEEEEEEeCCc
Confidence 578876 89999999999999999999999999999999999999999875
Q ss_pred --------------------------------------------------------------------------------
Q psy9618 469 -------------------------------------------------------------------------------- 468 (542)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (542)
T Consensus 80 ~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~ll 159 (207)
T TIGR01091 80 LGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSIV 159 (207)
T ss_pred HHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEEe
Confidence
Q ss_pred ----HHHHHHHhCCCCEEEEeecCCCCCCCCceecCCCcccccccCC
Q psy9618 469 ----SIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGT 511 (542)
Q Consensus 469 ----G~~~~~~~~p~v~i~t~~iD~~l~~~~~i~PGlGd~gdr~~gt 511 (542)
|++++.++||+++||||+||++||+++||+|||||||||||||
T Consensus 160 ~~~~gl~~l~~~~p~v~i~~~~id~~l~~~~yivPGlGd~Gdr~fgt 206 (207)
T TIGR01091 160 AAPEGIEAVEKAHPDVDIYTAAIDEKLNDNGYIVPGLGDAGDRAFGT 206 (207)
T ss_pred cCHHHHHHHHHHCCCCEEEEEEECCCccCCccCcCCCCCccccccCC
Confidence 9999999999999999999999999999999999999999998
No 18
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.90 E-value=7.5e-24 Score=207.07 Aligned_cols=94 Identities=36% Similarity=0.583 Sum_probs=90.4
Q ss_pred ceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhcCCchH-----------------------------
Q psy9618 418 ALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKV----------------------------- 468 (542)
Q Consensus 418 nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~Lp~~~----------------------------- 468 (542)
|+||++ |||+++++|+|||++|++.+|+++++|++++|++||+++||+++
T Consensus 3 ~v~~~~-~p~~~~~lt~lRd~~t~~~~fr~~~~rl~~~l~~eal~~l~~~~~~v~tp~g~~~g~~~~~~~~vvV~IlrgG 81 (209)
T PRK00129 3 KVHVVD-HPLIQHKLTLLRDKNTSTKRFRELLEELGRLLAYEATRDLPLEEVEIETPLGKTTGKRIAGKKLVIVPILRAG 81 (209)
T ss_pred ceEecC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcccceeEEEEECCCCcEEEEEecCCeEEEEEEeCCC
Confidence 688876 89999999999999999999999999999999999999999765
Q ss_pred --------------------------------------------------------------------------------
Q psy9618 469 -------------------------------------------------------------------------------- 468 (542)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (542)
T Consensus 82 ~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~ll 161 (209)
T PRK00129 82 LGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCLV 161 (209)
T ss_pred HHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEEe
Confidence
Q ss_pred ----HHHHHHHhCCCCEEEEeecCCCCCCCCceecCCCcccccccCCC
Q psy9618 469 ----SIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512 (542)
Q Consensus 469 ----G~~~~~~~~p~v~i~t~~iD~~l~~~~~i~PGlGd~gdr~~gt~ 512 (542)
|++++.++||+++||||+||++||+++||+|||||||||||||.
T Consensus 162 ~~~~gl~~l~~~~p~v~i~~~~iD~~l~~~~yi~PGlGd~Gdr~fgt~ 209 (209)
T PRK00129 162 AAPEGIKALEEAHPDVEIYTAAIDEKLNEHGYIVPGLGDAGDRLFGTK 209 (209)
T ss_pred cCHHHHHHHHHHCCCcEEEEEeecCCcCCCCcCCCCCCCccccccCCC
Confidence 99999999999999999999999999999999999999999983
No 19
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.90 E-value=9.3e-24 Score=201.94 Aligned_cols=94 Identities=35% Similarity=0.568 Sum_probs=89.4
Q ss_pred ceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhcCCchH-----------------------------
Q psy9618 418 ALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKV----------------------------- 468 (542)
Q Consensus 418 nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~Lp~~~----------------------------- 468 (542)
+++| ..||++++++|+|||++|++.+|+++++|++++|++||++.||.++
T Consensus 3 ~v~v-i~hpli~~~lt~lRdk~t~~~~Fr~~~~ei~~lL~yEa~~~l~~e~~~ieTP~~~~~~~~~~~~~i~~V~ILRAG 81 (210)
T COG0035 3 NVYV-IDHPLVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLGPTEGVQIAGKKIVIVPILRAG 81 (210)
T ss_pred ceEE-eCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhCcCceeEEEEECCCcceeeeeecCCcEEEEEEeecc
Confidence 4555 5799999999999999999999999999999999999999998876
Q ss_pred --------------------------------------------------------------------------------
Q psy9618 469 -------------------------------------------------------------------------------- 468 (542)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (542)
T Consensus 82 l~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~ 161 (210)
T COG0035 82 LGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSL 161 (210)
T ss_pred ccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCCeEEEECchhhccHhHHHHHHHHHHhCCCceEEEEEE
Confidence
Q ss_pred -----HHHHHHHhCCCCEEEEeecCCCCCCCCceecCCCcccccccCCC
Q psy9618 469 -----SIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512 (542)
Q Consensus 469 -----G~~~~~~~~p~v~i~t~~iD~~l~~~~~i~PGlGd~gdr~~gt~ 512 (542)
||+++.++||+|.||||+||++||++|||+|||||||||+|||+
T Consensus 162 vAapeGi~~v~~~~p~v~I~ta~iD~~Lne~gYIvPGLGDaGDR~fGt~ 210 (210)
T COG0035 162 VAAPEGIKAVEKAHPDVEIYTAAIDEGLNEKGYIVPGLGDAGDRLFGTK 210 (210)
T ss_pred EecHHHHHHHHHhCCCCeEEEEEeccccccCCCCccCCCcccccccCCC
Confidence 99999999999999999999999999999999999999999984
No 20
>PRK07429 phosphoribulokinase; Provisional
Probab=99.89 E-value=1.4e-22 Score=210.20 Aligned_cols=184 Identities=26% Similarity=0.461 Sum_probs=153.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhH
Q psy9618 39 EQVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLK 118 (542)
Q Consensus 39 ~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk 118 (542)
...++++|||+|+|||||||+++.|++.|+...+.++++|+|+.. ...++ ... .+..-+|.+.+++++.+.++.++
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~-~~~~r--~~~-g~~~l~p~~~~~d~l~~~l~~L~ 79 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSY-DRKQR--KEL-GITALDPRANNLDIMYEHLKALK 79 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccC-CHHHH--Hhc-CCcccCccchHHHHHHHHHHHHH
Confidence 345789999999999999999999999998766677899999742 33332 112 22233678889999999999999
Q ss_pred cCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHH
Q psy9618 119 EGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVI 198 (542)
Q Consensus 119 ~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl 198 (542)
+++.+.+|.|++.+.... ......+.++||+||++++....+++++|++|||+++.++++.|+++|+..++|.+.+++.
T Consensus 80 ~g~~I~~P~yd~~~g~~~-~~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~ 158 (327)
T PRK07429 80 TGQPILKPIYNHETGTFD-PPEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVL 158 (327)
T ss_pred CCCceecceeecCCCCcC-CcEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 999999999999887653 2334556789999999977677788999999999999999999999999988999998888
Q ss_pred HHHHhhccchhhccccCCCCcccEEEECCC
Q psy9618 199 KQYVNMVKPAFSTFIAPSMVHADIIVPRGG 228 (542)
Q Consensus 199 ~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~ 228 (542)
..+.. ..+.+.+|+.|+++.||+||.+..
T Consensus 159 ~~i~~-r~pd~~~yI~P~k~~ADiVI~~~p 187 (327)
T PRK07429 159 AEIEA-REPDFEAYIRPQRQWADVVIQFLP 187 (327)
T ss_pred HHHHH-hCccHhhhhcccccCCCEEEEcCC
Confidence 77765 589999999999999999998764
No 21
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.89 E-value=1.5e-22 Score=205.50 Aligned_cols=178 Identities=29% Similarity=0.543 Sum_probs=150.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCeec
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVD 124 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v~ 124 (542)
+|||+|++||||||+++.|+..|+...+.++++|+|++. ..+++. .. .+.+.+|.+.+++++.+.++.+++++.+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~-~~~~r~--~~-g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~ 76 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSL-DRKGRK--ET-GITALDPRANNFDLMYEQLKALKEGQAIE 76 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccC-CHHHHH--Hh-hcccccccchhHHHHHHHHHHHHCCCCcc
Confidence 589999999999999999999997666778899999863 333322 22 23344688888999999999999999999
Q ss_pred cceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhh
Q psy9618 125 VPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNM 204 (542)
Q Consensus 125 ~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~ 204 (542)
+|.|++..+.... ...+.+.+++|+||++++....+++++|++|||+++.+++++|+++|+...+|.+.+.+++.+..
T Consensus 77 ~P~y~~~~~~~~~-~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~- 154 (273)
T cd02026 77 KPIYNHVTGLIDP-PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEA- 154 (273)
T ss_pred cccccccCCCcCC-cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHh-
Confidence 9999998876432 23456678999999998877789999999999999999999999999999999999999988876
Q ss_pred ccchhhccccCCCCcccEEEECCC
Q psy9618 205 VKPAFSTFIAPSMVHADIIVPRGG 228 (542)
Q Consensus 205 v~p~y~~~i~p~~~~ADiVI~~~~ 228 (542)
..+.+.+|+.|+++.||+||....
T Consensus 155 r~~~~~~~I~P~~~~ADvVI~~~p 178 (273)
T cd02026 155 RKPDFEAYIDPQKQYADVVIQVLP 178 (273)
T ss_pred hchhHHHHhccccccCcEEEEccC
Confidence 589999999999999999997654
No 22
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=99.89 E-value=1.3e-23 Score=205.15 Aligned_cols=89 Identities=49% Similarity=0.880 Sum_probs=81.1
Q ss_pred CCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhc-CCchH---------------------------------
Q psy9618 423 PETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSL-LPFKV--------------------------------- 468 (542)
Q Consensus 423 ~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~-Lp~~~--------------------------------- 468 (542)
++||++++++|+|||++|+..+|+++++|++++|+++|++. +|+++
T Consensus 2 ~~~p~~~~~lt~LRd~~t~~~~Fr~~~~rl~~lL~~eal~~~l~~~~~~v~Tp~g~~~~g~~~~~~~i~~V~IlRaG~~m 81 (207)
T PF14681_consen 2 PQHPLLRHLLTILRDRNTSRAEFRRYLDRLGRLLAEEALADWLPYEEVEVETPLGHKYGGVILNEDKICIVPILRAGLPM 81 (207)
T ss_dssp EB-HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHTTT-S-EEEEEEEESSSEEEEEEECSSGCEEEEEETTTHHHH
T ss_pred CCCHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHhccccceeEEEEcCCCcEEEEEEeecccEEEEEEeCCcHHH
Confidence 68999999999999999999999999999999999999996 99876
Q ss_pred --------------------------------------------------------------------------------
Q psy9618 469 -------------------------------------------------------------------------------- 468 (542)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (542)
T Consensus 82 ~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ia 161 (207)
T PF14681_consen 82 LEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIA 161 (207)
T ss_dssp HHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEE
T ss_pred HHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEe
Confidence
Q ss_pred ---HHHHHHHhCCCCEEEEeecCCCCCCCCceecCCCcccccccCC
Q psy9618 469 ---SIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGT 511 (542)
Q Consensus 469 ---G~~~~~~~~p~v~i~t~~iD~~l~~~~~i~PGlGd~gdr~~gt 511 (542)
||+++.++||+|+||||+||++||+++||+|||||||||||||
T Consensus 162 s~~Gl~~l~~~~P~v~I~ta~iD~~L~~~~~i~PGlGD~GdR~fgT 207 (207)
T PF14681_consen 162 SPEGLERLLKAFPDVRIYTAAIDPELNENGYIVPGLGDAGDRYFGT 207 (207)
T ss_dssp EHHHHHHHHHHSTTSEEEEEEEESEEETTSEEESS-S-HHHHHHT-
T ss_pred cHHHHHHHHHhCCCeEEEEEEEccccCCCCCccCCCCChHhcccCc
Confidence 9999999999999999999999999999999999999999998
No 23
>PRK06696 uridine kinase; Validated
Probab=99.88 E-value=4.7e-22 Score=196.14 Aligned_cols=180 Identities=27% Similarity=0.342 Sum_probs=139.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhhchhcHHHHHHHhccccCCCC-----CccccHHhHHH
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH-----PDAFDFELLLP 112 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~-----p~a~D~~lL~~ 112 (542)
...+++|||+|+|||||||+|+.|++.|+.. .+.++++|+||+. ..++.. .++++ ++++|+++|.+
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~--~~~r~~-----~~~~~~~g~~~~~~d~~~L~~ 91 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP--RVIRYR-----RGRESAEGYYEDAYDYTALRR 91 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC--HHHHHH-----cCCCChhhcCccccCHHHHHH
Confidence 3468999999999999999999999999422 3456799999974 333221 11222 36899999999
Q ss_pred HHHHh-HcC--Ceeccceechhhchhcc-cccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchh
Q psy9618 113 TLQRL-KEG--KKVDVPIYNFVTHSRET-RTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDIL 188 (542)
Q Consensus 113 ~L~~l-k~g--~~v~~P~yd~~~~~~~~-~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~ 188 (542)
.+... +.+ ..+..|.|++..+.... ......+..++|+||++++. +.+..++|++|||+||.+++++|+..|+..
T Consensus 92 ~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~-~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~ 170 (223)
T PRK06696 92 LLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLR-PELRDLWDYKIFLDTDFEVSRRRGAKRDTE 170 (223)
T ss_pred HHHhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhh-hhHHhhCCEEEEEECCHHHHHHHHHHhhhh
Confidence 88764 333 24777889998876553 33444667899999999874 568899999999999999999999999988
Q ss_pred hhcCCHHHHHHHHHhhccchhhccccCC--CCcccEEEECCC
Q psy9618 189 ARGRDLEGVIKQYVNMVKPAFSTFIAPS--MVHADIIVPRGG 228 (542)
Q Consensus 189 ~rgr~~~~vl~q~~~~v~p~y~~~i~p~--~~~ADiVI~~~~ 228 (542)
.+|. .+.....|.+++.+.+..|+.+. ++.||+||+|+.
T Consensus 171 ~~g~-~~~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 171 AFGS-YEEAEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred hhCC-chHHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 8885 45567778888888888886554 788999999886
No 24
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.87 E-value=2.5e-22 Score=192.59 Aligned_cols=164 Identities=18% Similarity=0.258 Sum_probs=122.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCeec
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVD 124 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v~ 124 (542)
+|+|+|+|||||||+|+.|++.++ .+.+|++|+||+... +......+.++|++|+++|++++.+.|..++++..+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~--~~~~i~~Ddf~~~~~--~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~ 76 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP--NCCVIHQDDFFKPED--EIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFP 76 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC--CCeEEccccccCCcc--cCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCcc
Confidence 689999999999999999999984 355789999998543 2222333667899999999999999999999988655
Q ss_pred cceechhhchhc--------------ccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhh-
Q psy9618 125 VPIYNFVTHSRE--------------TRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILA- 189 (542)
Q Consensus 125 ~P~yd~~~~~~~--------------~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~- 189 (542)
.+.++....... .......+.++||+||.+++..+.+++++|++|||++|.+++++|+++|+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~ 156 (187)
T cd02024 77 KFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVT 156 (187)
T ss_pred CcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccc
Confidence 554443322111 11223466789999999998888899999999999999999999999998533
Q ss_pred hcCCHHHHHHHHHhhccchhhcc
Q psy9618 190 RGRDLEGVIKQYVNMVKPAFSTF 212 (542)
Q Consensus 190 rgr~~~~vl~q~~~~v~p~y~~~ 212 (542)
.+---.....+|.+.++|.|.+.
T Consensus 157 ~~~~w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 157 LEGFWPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred cCcccCCCCcccccccchhHHHH
Confidence 11011223346677788877643
No 25
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.86 E-value=5e-23 Score=199.50 Aligned_cols=115 Identities=22% Similarity=0.341 Sum_probs=108.1
Q ss_pred hhhhhccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCc
Q psy9618 301 GYIRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQI 380 (542)
Q Consensus 301 ~~~~~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (542)
..|++|++|.+|+|||++|.|..++..++|.+||||||||+|+|+++++++ |+
T Consensus 78 ~~L~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~---------------------------d~ 130 (218)
T COG0572 78 KDLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLM---------------------------DL 130 (218)
T ss_pred HHHHcCCcccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhc---------------------------CE
Confidence 468999999999999999999999999999999999999999999999986 99
Q ss_pred eeecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHH
Q psy9618 381 KGLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFA 460 (542)
Q Consensus 381 ~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~a 460 (542)
||||+++.++|++||+.||+.+||++.+++ +.++.-.+++++..|++|+++.|+++++++
T Consensus 131 kIfvdtd~D~RliRri~RD~~~rg~~~e~v--------------------i~qy~~~vkp~~~~fIeptk~~ADiiip~~ 190 (218)
T COG0572 131 KIFVDTDADVRLIRRIKRDVQERGRDLESV--------------------IEQYVKTVRPMYEQFIEPTKKYADIIIPSG 190 (218)
T ss_pred EEEEeCCccHHHHHHHHHHHHHhCCCHHHH--------------------HHHHHHhhChhhhhccCcccccceEEeecC
Confidence 999999999999999999999999998874 666777899999999999999999999997
Q ss_pred hh
Q psy9618 461 LS 462 (542)
Q Consensus 461 l~ 462 (542)
..
T Consensus 191 ~~ 192 (218)
T COG0572 191 GK 192 (218)
T ss_pred Cc
Confidence 43
No 26
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.83 E-value=4.3e-20 Score=182.95 Aligned_cols=185 Identities=22% Similarity=0.282 Sum_probs=145.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCe--EEe-ecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHH
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPW--VTL-LSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQR 116 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~--v~i-Is~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~ 116 (542)
..++++|||+|++||||||+++.|+..+.... +.+ +++|+||.... .... ......++.|+++|.+.+.+.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~--~~~~-~g~~~~~~~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNA--VLDA-HGLRPRKGAPETFDVAGLAALLRR 106 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHH--HHHh-cccccccCCCCCCCHHHHHHHHHH
Confidence 34589999999999999999999999986432 234 89999986422 1111 111123567889999999999999
Q ss_pred hHcCC-eeccceechhhchhcccccccC-CCcEEEEEccccccC----hhhhccCCEEEEEECCHHHHHHHhhhcchhhh
Q psy9618 117 LKEGK-KVDVPIYNFVTHSRETRTKPMY-GANVIIFEGILAFHN----PQVLELLDMKVFVDTDADVRLARRLKRDILAR 190 (542)
Q Consensus 117 lk~g~-~v~~P~yd~~~~~~~~~~~~~~-~~~vVIvEGi~~~~~----~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~r 190 (542)
++.+. .+.+|.|++..++......... ...++|+||.+++.. ..+.+.+|++|||++|.+++++|+.+|+ .++
T Consensus 107 l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~-~~~ 185 (229)
T PRK09270 107 LRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARK-LAG 185 (229)
T ss_pred HHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHH-Hhc
Confidence 99887 8999999998887654443333 568999999988754 3566799999999999999999999996 467
Q ss_pred cCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCC
Q psy9618 191 GRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGE 229 (542)
Q Consensus 191 gr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~ 229 (542)
|++.+++.+.+.....+.+ .++.+.++.||+||.|++.
T Consensus 186 g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~ 223 (229)
T PRK09270 186 GLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTAT 223 (229)
T ss_pred CCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCC
Confidence 8898888888877666766 5888899999999999874
No 27
>PRK07667 uridine kinase; Provisional
Probab=99.83 E-value=4e-20 Score=178.54 Aligned_cols=171 Identities=20% Similarity=0.317 Sum_probs=127.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhhchhcHHHHHHHhccccCCCC--CccccHHhHHHH-HHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH--PDAFDFELLLPT-LQR 116 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~--p~a~D~~lL~~~-L~~ 116 (542)
.+++|||+|++||||||+|+.|++.|+.. .+.++++|+||+.... +...+...+.. ...+|++.|.+. +..
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~----~~~~~~~~~~~~~~~~~d~~~L~~~v~~~ 91 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNK----RYHTGFEEWYEYYYLQWDIEWLRQKFFRK 91 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhh----HHhcCCCchhhhhhhhhhHHHHHHHHHHh
Confidence 45899999999999999999999998532 3568899999973221 11111111111 125677777754 588
Q ss_pred hHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHH
Q psy9618 117 LKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEG 196 (542)
Q Consensus 117 lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~ 196 (542)
+++++.+.+|.|++..+..........+.+++|+||+++++ ..+.+++|++|||+||.+++++|+++|+. .
T Consensus 92 L~~~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~-~~~~~~~d~~v~V~~~~~~~~~R~~~r~~--------~ 162 (193)
T PRK07667 92 LQNETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQR-KEWRDFFHYMVYLDCPRETRFLRESEETQ--------K 162 (193)
T ss_pred hcCCCeEEEeeeccccccccccceecCCCCEEEEEehhhhh-hhHHhhceEEEEEECCHHHHHHHHhcccH--------h
Confidence 99999999999999987765443445667999999999775 56889999999999999999999998752 2
Q ss_pred HHHHHHhhccchhhccccC--CCCcccEEEE
Q psy9618 197 VIKQYVNMVKPAFSTFIAP--SMVHADIIVP 225 (542)
Q Consensus 197 vl~q~~~~v~p~y~~~i~p--~~~~ADiVI~ 225 (542)
...+|..+..+.++.|+.. .+..||+|+.
T Consensus 163 ~~~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 163 NLSKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred HHHHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 3456666666777777654 3778999973
No 28
>PRK08233 hypothetical protein; Provisional
Probab=99.77 E-value=8.6e-18 Score=159.24 Aligned_cols=175 Identities=23% Similarity=0.371 Sum_probs=125.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGK 121 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~ 121 (542)
++++|+|+|++||||||+|+.|+++|+.. .++++|.|+....+.+..........| +.++.+.+.+.++.+.++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~- 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNS--KALYFDRYDFDNCPEDICKWIDKGANY---SEWVLTPLIKDIQELIAK- 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCC--ceEEECCEEcccCchhhhhhhhccCCh---hhhhhHHHHHHHHHHHcC-
Confidence 36899999999999999999999999743 345778887543332222222222223 456666676666655322
Q ss_pred eeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhc-CCHHHHHHH
Q psy9618 122 KVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARG-RDLEGVIKQ 200 (542)
Q Consensus 122 ~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rg-r~~~~vl~q 200 (542)
.+.++||+||.+....+.+.+.+|++|||++|.+++++|+++|+..... .+....+..
T Consensus 76 ---------------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~ 134 (182)
T PRK08233 76 ---------------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKH 134 (182)
T ss_pred ---------------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 1236788999887766778889999999999999999999998753321 234455677
Q ss_pred HHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 201 YVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 201 ~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
|.....|.|..+..+....++++|+++. .++.+.++|...|..
T Consensus 135 ~~~~~~~~y~~~~~~~~~~~~~vId~~~----~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 135 YLNYARPLYLEALHTVKPNADIVLDGAL----SVEEIINQIEEELYR 177 (182)
T ss_pred HHHHHHHHHHHHhhcCccCCeEEEcCCC----CHHHHHHHHHHHHHh
Confidence 8788889999888887778999987443 457888888877764
No 29
>PRK06547 hypothetical protein; Provisional
Probab=99.73 E-value=1.8e-17 Score=157.26 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=109.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
..+++|+|+|+|||||||+|+.|++.++.+. +++|+||+.... . ..+.+.+.+.+.. .|
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~---~~~d~~~~~~~~--~--------------~~~~~~l~~~~l~--~g 71 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQL---VHLDDLYPGWHG--L--------------AAASEHVAEAVLD--EG 71 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCe---ecccceeccccc--C--------------ChHHHHHHHHHHh--CC
Confidence 4578999999999999999999999998664 499999963211 0 1123444444444 56
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCC-----EEEEEECCHHHHHHHhhhcchhhhcCCHH
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLD-----MKVFVDTDADVRLARRLKRDILARGRDLE 195 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~D-----l~IfLdad~d~rl~Rrl~Rd~~~rgr~~~ 195 (542)
+...++ |++..+... ......+.+++|+||++++. +.+++++| ++|||++|.++|++|+++|+.. ..
T Consensus 72 ~~~~~~-yd~~~~~~~-~~~~l~~~~vVIvEG~~al~-~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-----~~ 143 (172)
T PRK06547 72 RPGRWR-WDWANNRPG-DWVSVEPGRRLIIEGVGSLT-AANVALASLLGEVLTVWLDGPEALRKERALARDPD-----YA 143 (172)
T ss_pred CCceec-CCCCCCCCC-CcEEeCCCCeEEEEehhhcc-HHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-----hh
Confidence 666677 888876543 23344566899999999884 66888899 9999999999999999999843 22
Q ss_pred HHHHHHHhhccchhhccccC--CCCcccEEEE
Q psy9618 196 GVIKQYVNMVKPAFSTFIAP--SMVHADIIVP 225 (542)
Q Consensus 196 ~vl~q~~~~v~p~y~~~i~p--~~~~ADiVI~ 225 (542)
.-+ +...+..+.|+.. .+..||+++.
T Consensus 144 ~~~----~~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 144 PHW----EMWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHH----HHHHHHHHHHHhcCCChhccEEEec
Confidence 333 3334555555543 3678999874
No 30
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.70 E-value=7e-17 Score=157.04 Aligned_cols=186 Identities=16% Similarity=0.149 Sum_probs=122.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHH-HH---HHHhccccCCCCCccccHHhHHHHH---
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEE-QH---KKAAQNEYNFDHPDAFDFELLLPTL--- 114 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e-~~---~~~~~~~~~fd~p~a~D~~lL~~~L--- 114 (542)
.|++|||+|++||||||+++.|++.+|+++ +++|.+.+.+... .. -....++..++ .+.+|...|.+.+
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~v---idaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d 80 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNV---VCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITES 80 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeE---EeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCC
Confidence 478999999999999999999999999774 4999988765322 11 11223333333 4678887777766
Q ss_pred -HHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChh-hhccCCEEEEEECCHHHHHHHhhhcchhhhcC
Q psy9618 115 -QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQ-VLELLDMKVFVDTDADVRLARRLKRDILARGR 192 (542)
Q Consensus 115 -~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~-l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr 192 (542)
+.++.-+.+.+|.+.......... .+..++++|.+++++... ....||.+|+|+||.+++++|+++|+..
T Consensus 81 ~~~~~~Le~i~HP~V~~~~~~~~~~----~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~---- 152 (204)
T PRK14733 81 KEAKKWLEDYLHPVINKEIKKQVKE----SDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGK---- 152 (204)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh----cCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCC----
Confidence 223333567788766554433322 234689999999986431 2468999999999999999999999743
Q ss_pred CHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHH
Q psy9618 193 DLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQL 245 (542)
Q Consensus 193 ~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L 245 (542)
+.+........+.. . +..++.||+||.|++.+..++...++++...+
T Consensus 153 s~~~a~~ri~~Q~~-~-----eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 153 NRQQAVAFINLQIS-D-----KEREKIADFVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred CHHHHHHHHHhCCC-H-----HHHHHhCCEEEECcCCCHHHHHHHHHHHHHHH
Confidence 44444333332221 1 23467799999999844454555455444433
No 31
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.70 E-value=3e-16 Score=156.58 Aligned_cols=190 Identities=16% Similarity=0.164 Sum_probs=127.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHH-----HHHHhccccCCCCCccccHHhHHHHH---
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ-----HKKAAQNEYNFDHPDAFDFELLLPTL--- 114 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~-----~~~~~~~~~~fd~p~a~D~~lL~~~L--- 114 (542)
|++|||+|++||||||+++.|.+.+|++ +|++|...|.+.+.. .-....++..++..+.+|...|.+.+
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~---viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d 77 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIE---VIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSD 77 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCe---EEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCC
Confidence 4799999999999999999999888876 459999987654321 11222234444445788888888766
Q ss_pred -HHhHcCCeeccceechhhchhccc--------ccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhc
Q psy9618 115 -QRLKEGKKVDVPIYNFVTHSRETR--------TKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKR 185 (542)
Q Consensus 115 -~~lk~g~~v~~P~yd~~~~~~~~~--------~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~R 185 (542)
+.++.-+.+.+|.+.........+ .....+..++++|.+++|+.......||.+|+|+||.+++++|+.+|
T Consensus 78 ~~~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R 157 (244)
T PTZ00451 78 AQARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKR 157 (244)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHc
Confidence 223334567788654433222211 01112345899999999976434568899999999999999999988
Q ss_pred chhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECC--CCCHHHHHHHHHHHHHHHH
Q psy9618 186 DILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRG--GENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 186 d~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~--~~n~~ai~~iv~~I~~~L~ 246 (542)
+ |.+.++..+....... ....++.||+||.|+ + +...+...++.+..++.
T Consensus 158 ~----g~s~eea~~Ri~~Q~~------~~ek~~~aD~VI~N~~~g-~~~~L~~~v~~~~~~~~ 209 (244)
T PTZ00451 158 N----GFSKEEALQRIGSQMP------LEEKRRLADYIIENDSAD-DLDELRGSVCDCVAWMS 209 (244)
T ss_pred C----CCCHHHHHHHHHhCCC------HHHHHHhCCEEEECCCCC-CHHHHHHHHHHHHHHHH
Confidence 5 4455555555544322 123467899999998 7 55555555666555555
No 32
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.68 E-value=1.8e-16 Score=157.66 Aligned_cols=146 Identities=27% Similarity=0.436 Sum_probs=117.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhhhchhcHHHHH-HHhccccCCCCCccccHHhHHHH
Q psy9618 39 EQVEPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYRVLNEEQHK-KAAQNEYNFDHPDAFDFELLLPT 113 (542)
Q Consensus 39 ~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg----~p~v~iIs~Ddfy~~l~~e~~~-~~~~~~~~fd~p~a~D~~lL~~~ 113 (542)
+.+.|+||||+|+.|+||||.|+.|+..+. .+.+.++-||.|+..- ..+. +...... +.|++||...|.+.
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n--~~L~~~glm~rK--GfPeSyD~~~ll~f 153 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPN--AVLDERGLMARK--GFPESYDVAALLRF 153 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCH--hHhhhccccccC--CCCccccHHHHHHH
Confidence 356789999999999999999999998884 3557889999998642 2221 2222233 44999999999999
Q ss_pred HHHhHcCCe-eccceechhhchhccc-ccccCCCcEEEEEccccccCh----hhhccCCEEEEEECCHHHHHHHhhhcch
Q psy9618 114 LQRLKEGKK-VDVPIYNFVTHSRETR-TKPMYGANVIIFEGILAFHNP----QVLELLDMKVFVDTDADVRLARRLKRDI 187 (542)
Q Consensus 114 L~~lk~g~~-v~~P~yd~~~~~~~~~-~~~~~~~~vVIvEGi~~~~~~----~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~ 187 (542)
+..+|.++. |.+|+|++.++..... .......+++|+||++++.++ .+.++||+.||||++.+...+|.+.|-.
T Consensus 154 l~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl 233 (283)
T COG1072 154 LSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFL 233 (283)
T ss_pred HHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHH
Confidence 999997765 9999999999988744 455577899999999888765 3457899999999999999999999965
Q ss_pred h
Q psy9618 188 L 188 (542)
Q Consensus 188 ~ 188 (542)
.
T Consensus 234 ~ 234 (283)
T COG1072 234 K 234 (283)
T ss_pred h
Confidence 3
No 33
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.68 E-value=1.9e-16 Score=153.28 Aligned_cols=168 Identities=19% Similarity=0.225 Sum_probs=113.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHH-----HHHHhccccCCCCCc-cccHHhHHHHH---
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ-----HKKAAQNEYNFDHPD-AFDFELLLPTL--- 114 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~-----~~~~~~~~~~fd~p~-a~D~~lL~~~L--- 114 (542)
.+|||+|++||||||+|+.|++.+|++++ |+|.+.+.+.... .-....++..++..+ .+|...|.+.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i---~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d 78 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPIL---DADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFND 78 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEe---eCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCC
Confidence 58999999999999999999998898755 9999988654321 112223333344456 67777776665
Q ss_pred -HHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 115 -QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 115 -~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
..++.-+.+.+|............ .....++++|.+++++. .+..+||.+|||+||.+++++|+.+|+ |.+
T Consensus 79 ~~~~~~l~~i~hP~i~~~~~~~~~~---~~~~~~vv~e~pll~E~-~~~~~~D~ii~V~a~~e~r~~Rl~~R~----g~s 150 (195)
T PRK14730 79 PEERRWLENLIHPYVRERFEEELAQ---LKSNPIVVLVIPLLFEA-KLTDLCSEIWVVDCSPEQQLQRLIKRD----GLT 150 (195)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh---cCCCCEEEEEeHHhcCc-chHhCCCEEEEEECCHHHHHHHHHHcC----CCC
Confidence 222222445677554433333221 12346899999999865 577899999999999999999999996 345
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEECCC
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGG 228 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~ 228 (542)
.+.......... + .+..+..||+||.|++
T Consensus 151 ~e~~~~ri~~Q~-~-----~~~k~~~aD~vI~N~g 179 (195)
T PRK14730 151 EEEAEARINAQW-P-----LEEKVKLADVVLDNSG 179 (195)
T ss_pred HHHHHHHHHhCC-C-----HHHHHhhCCEEEECCC
Confidence 555444333321 1 2345678999999888
No 34
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.67 E-value=2.6e-16 Score=152.13 Aligned_cols=181 Identities=20% Similarity=0.259 Sum_probs=117.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHH-----HHHHhccccCCCCCccccHHhHHHHHH--
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ-----HKKAAQNEYNFDHPDAFDFELLLPTLQ-- 115 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~-----~~~~~~~~~~fd~p~a~D~~lL~~~L~-- 115 (542)
|++|||+|++||||||+++.|++ +|++. +++|.+.+.+.... ......++-.|...+.+|...|.+.+-
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~---i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~ 77 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPV---IDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSD 77 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEE---EEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCC
Confidence 57999999999999999999988 88764 59999988653211 111223333454456788877776662
Q ss_pred --HhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 116 --RLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 116 --~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
.++.-+.+.+|.+........... ....++++|++++++ ..+...||.+|+|+||.+++++|+.+|+. .+
T Consensus 78 ~~~~~~L~~i~hP~v~~~~~~~~~~~---~~~~~vv~e~pll~e-~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~----~s 149 (194)
T PRK00081 78 PEARKKLEAILHPLIREEILEQLQEA---ESSPYVVLDIPLLFE-NGLEKLVDRVLVVDAPPETQLERLMARDG----LS 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc---ccCCEEEEEehHhhc-CCchhhCCeEEEEECCHHHHHHHHHHcCC----CC
Confidence 233334566776654443332211 122689999999986 45778899999999999999999999863 33
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHH
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQL 245 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L 245 (542)
.+........+. +. ......||+||.|++ + ++.+.+++...+
T Consensus 150 ~e~~~~ri~~Q~-~~-----~~~~~~ad~vI~N~g-~---~e~l~~qv~~i~ 191 (194)
T PRK00081 150 EEEAEAIIASQM-PR-----EEKLARADDVIDNNG-D---LEELRKQVERLL 191 (194)
T ss_pred HHHHHHHHHHhC-CH-----HHHHHhCCEEEECCC-C---HHHHHHHHHHHH
Confidence 443333322211 11 223567899999887 2 344444454443
No 35
>PTZ00301 uridine kinase; Provisional
Probab=99.67 E-value=1.1e-17 Score=163.52 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=103.0
Q ss_pred hhhhhccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCc
Q psy9618 301 GYIRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQI 380 (542)
Q Consensus 301 ~~~~~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (542)
..|++|++|.+|+|||.+|.|..++..++|.+||||||||+|+++.++++. |+
T Consensus 77 ~~L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~~~l~~l~---------------------------D~ 129 (210)
T PTZ00301 77 RELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNEM---------------------------DC 129 (210)
T ss_pred HHHHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCCHHHHHhC---------------------------CE
Confidence 356779999999999999999888889999999999999999999999874 99
Q ss_pred eeecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHH
Q psy9618 381 KGLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFA 460 (542)
Q Consensus 381 ~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~a 460 (542)
++|++++.++|+.||+.||+.+||++.+++ +.++...+.++..+|+.+++..|+++++.+
T Consensus 130 ~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v--------------------~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~ 189 (210)
T PTZ00301 130 LIFVDTPLDICLIRRAKRDMRERGRTFESV--------------------IEQYEATVRPMYYAYVEPSKVYADIIVPSW 189 (210)
T ss_pred EEEEeCChhHHHHHHHhhhHHhcCCCHHHH--------------------HHHHHHhhcccHHHHcCccccCCcEEEcCC
Confidence 999999999999999999999999987762 566888899999999999999999999754
No 36
>PLN02422 dephospho-CoA kinase
Probab=99.67 E-value=4.4e-16 Score=154.08 Aligned_cols=185 Identities=22% Similarity=0.226 Sum_probs=125.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHH-----HHHhccccCCCCCccccHHhHHHHH----
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQH-----KKAAQNEYNFDHPDAFDFELLLPTL---- 114 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~-----~~~~~~~~~fd~p~a~D~~lL~~~L---- 114 (542)
.+|||+|++||||||+++.|+ ++|++. +++|...+.+..... -....++-.++..+.+|...|.+.+
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~---idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~ 77 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPV---VDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDP 77 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeE---EehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCH
Confidence 589999999999999999998 678764 599999886654321 1223344445566788888888777
Q ss_pred HHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCH
Q psy9618 115 QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDL 194 (542)
Q Consensus 115 ~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~ 194 (542)
..++.-+.+.+|.+........... ...+..++++|.+++++. .+...||.+|||+||.+++++|+.+|+ |.+.
T Consensus 78 ~~~~~Le~IlHP~V~~~~~~~~~~~-~~~~~~~vv~eipLL~E~-~~~~~~D~vI~V~a~~e~ri~RL~~R~----g~s~ 151 (232)
T PLN02422 78 SKRQLLNRLLAPYISSGIFWEILKL-WLKGCKVIVLDIPLLFET-KMDKWTKPVVVVWVDPETQLERLMARD----GLSE 151 (232)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH-HhcCCCEEEEEehhhhhc-chhhhCCEEEEEECCHHHHHHHHHHcC----CCCH
Confidence 2333345677887644333222111 112346899999999864 577889999999999999999999997 3445
Q ss_pred HHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHH
Q psy9618 195 EGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQL 245 (542)
Q Consensus 195 ~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L 245 (542)
++.......+. +. +..++.||+||.|++ +...+...++++.+.+
T Consensus 152 eea~~Ri~~Q~-~~-----eek~~~AD~VI~N~g-s~e~L~~qv~~ll~~l 195 (232)
T PLN02422 152 EQARNRINAQM-PL-----DWKRSKADIVIDNSG-SLEDLKQQFQKVLEKI 195 (232)
T ss_pred HHHHHHHHHcC-Ch-----hHHHhhCCEEEECCC-CHHHHHHHHHHHHHHH
Confidence 55444433322 11 223677999999998 5555555555555544
No 37
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.66 E-value=1.1e-15 Score=147.05 Aligned_cols=191 Identities=19% Similarity=0.270 Sum_probs=124.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHH-----------H--HHHHhccccCCCCC--ccccH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEE-----------Q--HKKAAQNEYNFDHP--DAFDF 107 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e-----------~--~~~~~~~~~~fd~p--~a~D~ 107 (542)
.++|+|.||+||||||+|+.||++||++|+ +++.+||.++-. . ..........|... -.++-
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yl---dTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~g 80 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYL---DTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNG 80 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCee---cccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECC
Confidence 489999999999999999999999999988 999999964421 1 11112222333221 01111
Q ss_pred HhHHHHHHHhHcCCe----eccceechhhchhcccccccCCCcEEEEEcc----ccccChhhhccCCEEEEEECCHHHHH
Q psy9618 108 ELLLPTLQRLKEGKK----VDVPIYNFVTHSRETRTKPMYGANVIIFEGI----LAFHNPQVLELLDMKVFVDTDADVRL 179 (542)
Q Consensus 108 ~lL~~~L~~lk~g~~----v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi----~~~~~~~l~~l~Dl~IfLdad~d~rl 179 (542)
+.+.+.|+.-.-+.. ..+|.+......++.... ...+-+|+||- .+|++ .++||||+++.++|.
T Consensus 81 edvs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a--~~~~~~V~dGRDiGTvV~Pd------A~lKiFLtAS~e~RA 152 (222)
T COG0283 81 EDVSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFA--KNGPGIVADGRDIGTVVFPD------AELKIFLTASPEERA 152 (222)
T ss_pred chhhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHH--hcCCCEEEecCCCcceECCC------CCeEEEEeCCHHHHH
Confidence 222222222111111 123444333333332222 12244899995 44444 489999999999999
Q ss_pred HHhhhcchhhhcC--CHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 180 ARRLKRDILARGR--DLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 180 ~Rrl~Rd~~~rgr--~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
+||.+... ..|. ..++++....++++.+..+-+.|.+...|.++-.+. ...+++++++|..+.++
T Consensus 153 ~RR~~q~~-~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs--~msieeVv~~il~~~~~ 219 (222)
T COG0283 153 ERRYKQLQ-AKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTS--SLSIEEVVEKILELIRQ 219 (222)
T ss_pred HHHHHHHH-hccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECC--CCcHHHHHHHHHHHHHH
Confidence 99988654 3442 268899999999999999999999999987765443 33568999999887763
No 38
>KOG3308|consensus
Probab=99.66 E-value=1e-16 Score=151.89 Aligned_cols=181 Identities=20% Similarity=0.345 Sum_probs=126.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGK 121 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~ 121 (542)
+.+||||+|++.|||||+|+.|.+.|+ .+.+||.|+||+. +++......+-.+|+.++++|++.+.+.+.....+.
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~--~~~lIhqDDFyKp--~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~ 78 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFP--GCSLIHQDDFYKP--ENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSR 78 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHcc--CCeeeccccccCc--hhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCc
Confidence 458999999999999999999999985 5668999999995 444444444667899999999999998887654442
Q ss_pred e-eccc-----eechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHH
Q psy9618 122 K-VDVP-----IYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLE 195 (542)
Q Consensus 122 ~-v~~P-----~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~ 195 (542)
. ...+ .|..-.|....-+...+..+++++||.+++..+.+...+|..|++..+.+++.+||-+|-... ..
T Consensus 79 ~~~~~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt~y~----p~ 154 (225)
T KOG3308|consen 79 HNAPEAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREARTYYP----PD 154 (225)
T ss_pred cccchHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccccCC----CC
Confidence 2 1100 111111111112445577899999999999999999999999999999999999998885421 10
Q ss_pred HHHHHHHh-hccchhhccccCCCCcc--cEEEECCCCCHH
Q psy9618 196 GVIKQYVN-MVKPAFSTFIAPSMVHA--DIIVPRGGENCV 232 (542)
Q Consensus 196 ~vl~q~~~-~v~p~y~~~i~p~~~~A--DiVI~~~~~n~~ 232 (542)
. - .|.. .++|.|.++.+..+..+ |..+-|+.-+..
T Consensus 155 ~-t-gyfd~~~~P~Y~~~~~~~~d~~~h~~~flngdvs~e 192 (225)
T KOG3308|consen 155 D-T-GYFDPVVWPHYEKNFEEARDRSRHDSLFLNGDVSEE 192 (225)
T ss_pred C-C-ccccCccchHHHHHHHHHHhhcccceeeecccchhh
Confidence 0 0 2333 26777776665544443 677776653333
No 39
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.66 E-value=2.1e-16 Score=150.81 Aligned_cols=167 Identities=21% Similarity=0.271 Sum_probs=116.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHH-----HHHhccccCCCCCccccHHhHHHHHHH---
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQH-----KKAAQNEYNFDHPDAFDFELLLPTLQR--- 116 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~-----~~~~~~~~~fd~p~a~D~~lL~~~L~~--- 116 (542)
+|+|+|++||||||+++.|++ +|++.+ ++|.+.+.+..... -....+...+...+.+|...|.+.+-.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i---~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~ 76 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVI---DADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPE 76 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEE---ecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHH
Confidence 589999999999999999988 887654 99999886543211 112223333444567888777776632
Q ss_pred -hHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHH
Q psy9618 117 -LKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLE 195 (542)
Q Consensus 117 -lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~ 195 (542)
++.-+.+.+|.+........... ....++++|++++++. .+..+||.+|||+||.+++++|+++|+. .+.+
T Consensus 77 ~~~~l~~i~hp~i~~~~~~~~~~~---~~~~~vive~plL~e~-~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~----~s~~ 148 (179)
T cd02022 77 KRKKLEAITHPLIRKEIEEQLAEA---RKEKVVVLDIPLLFET-GLEKLVDRVIVVDAPPEIQIERLMKRDG----LSEE 148 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---cCCCEEEEEehHhhcC-CcHHhCCeEEEEECCHHHHHHHHHHcCC----CCHH
Confidence 33445677887766554443221 1236899999998864 4678999999999999999999999973 4555
Q ss_pred HHHHHHHhhccchhhccccCCCCcccEEEECCCC
Q psy9618 196 GVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGE 229 (542)
Q Consensus 196 ~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~ 229 (542)
.....+...... ++....||+||.|++.
T Consensus 149 ~~~~r~~~Q~~~------~~~~~~aD~vI~N~~~ 176 (179)
T cd02022 149 EAEARIASQMPL------EEKRARADFVIDNSGS 176 (179)
T ss_pred HHHHHHHhcCCH------HHHHHhCCEEEECcCC
Confidence 555555443321 2346779999999873
No 40
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.65 E-value=2.3e-15 Score=146.39 Aligned_cols=185 Identities=21% Similarity=0.243 Sum_probs=121.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHH-----HHHHhccccCCCCCccccHHhHHHHH---
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ-----HKKAAQNEYNFDHPDAFDFELLLPTL--- 114 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~-----~~~~~~~~~~fd~p~a~D~~lL~~~L--- 114 (542)
|++|||+|++||||||+++.|++ +|++ +|++|...+.+.... .-....+.-.++..+.+|...|.+.+
T Consensus 1 m~~igitG~igsGKst~~~~l~~-~g~~---vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~ 76 (200)
T PRK14734 1 MLRIGLTGGIGSGKSTVADLLSS-EGFL---IVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFAS 76 (200)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCe---EEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCC
Confidence 46899999999999999999987 7765 559998776543211 11233344445556788888777766
Q ss_pred -HHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 115 -QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 115 -~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
+.++.-+.+.+|.+........... ...+..++++|..+++.. .+...||.+|||+||.+++++|+.+|+ |.+
T Consensus 77 ~~~~~~le~i~hP~v~~~~~~~~~~~-~~~~~~~vv~e~plL~e~-g~~~~~D~vi~V~a~~e~ri~Rl~~R~----g~s 150 (200)
T PRK14734 77 PEQTALLNAITHPRIAEETARRFNEA-RAQGAKVAVYDMPLLVEK-GLDRKMDLVVVVDVDVEERVRRLVEKR----GLD 150 (200)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHH-HhcCCCEEEEEeeceeEc-CccccCCeEEEEECCHHHHHHHHHHcC----CCC
Confidence 2233334567776643333222111 113457899999988864 466789999999999999999999885 556
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHH
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQ 244 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~ 244 (542)
.+.....+..+....+ .+..||+||.|++ +...+...++++.+.
T Consensus 151 ~e~~~~ri~~Q~~~~~------k~~~ad~vI~N~g-~~e~l~~~v~~~~~~ 194 (200)
T PRK14734 151 EDDARRRIAAQIPDDV------RLKAADIVVDNNG-TREQLLAQVDGLIAE 194 (200)
T ss_pred HHHHHHHHHhcCCHHH------HHHhCCEEEECcC-CHHHHHHHHHHHHHH
Confidence 6666666555443322 2467999999988 344344444444433
No 41
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.64 E-value=1.2e-15 Score=147.83 Aligned_cols=183 Identities=23% Similarity=0.258 Sum_probs=124.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHH-----HHHHhccccCCCCCccccHHhHHHHH----H
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ-----HKKAAQNEYNFDHPDAFDFELLLPTL----Q 115 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~-----~~~~~~~~~~fd~p~a~D~~lL~~~L----~ 115 (542)
+|||+|++||||||+++.|++ +|.. +|++|...+.+.+.. .-....+...++..+.+|...|.+.+ .
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~---~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~ 76 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAF---GISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEE 76 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCE---EEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHH
Confidence 489999999999999998854 6744 569999987654321 11223344445556788888887777 2
Q ss_pred HhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHH
Q psy9618 116 RLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLE 195 (542)
Q Consensus 116 ~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~ 195 (542)
.++.-+.+.+|.+........... ....++|+|.+++++. .+...||.+|||+||.+++++|+.+|+ |.+.+
T Consensus 77 ~~~~L~~i~hP~v~~~~~~~~~~~---~~~~~vi~e~pLL~E~-~~~~~~D~vi~V~a~~e~r~~RL~~R~----g~s~e 148 (196)
T PRK14732 77 KLKALNELIHPLVRKDFQKILQTT---AEGKLVIWEVPLLFET-DAYTLCDATVTVDSDPEESILRTISRD----GMKKE 148 (196)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH---hcCCcEEEEeeeeeEc-CchhhCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 233335677887655443333221 1236789999999874 466889999999999999999999996 34555
Q ss_pred HHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 196 GVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 196 ~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
.....+.... ...+..+.||+||.|++ +...+...++++.+.+.
T Consensus 149 ~a~~ri~~Q~------~~~~k~~~aD~vI~N~~-~~~~l~~~v~~l~~~~~ 192 (196)
T PRK14732 149 DVLARIASQL------PITEKLKRADYIVRNDG-NREGLKEECKILYSTLL 192 (196)
T ss_pred HHHHHHHHcC------CHHHHHHhCCEEEECCC-CHHHHHHHHHHHHHHHH
Confidence 5555444322 23445778999999988 56666666666665544
No 42
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.64 E-value=2.2e-16 Score=150.84 Aligned_cols=167 Identities=25% Similarity=0.346 Sum_probs=111.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHH-----HHHHhccccCCCCCccccHHhHHHHH----
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ-----HKKAAQNEYNFDHPDAFDFELLLPTL---- 114 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~-----~~~~~~~~~~fd~p~a~D~~lL~~~L---- 114 (542)
++|||+|++||||||+++.|++ +|++ +|++|...|.+.... .-....+...++..+.+|...|.+.+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~---vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~ 76 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFP---VIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDP 76 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-E---EEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCC---EECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCH
Confidence 5899999999999999999977 8866 459999987654211 12233445556666788998888777
Q ss_pred HHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCH
Q psy9618 115 QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDL 194 (542)
Q Consensus 115 ~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~ 194 (542)
..++.-+.+.+|.+........... ....++++|.+++++. .+..+||.+|+|+||.+++++|.++|+ |.+.
T Consensus 77 ~~~~~L~~iihP~I~~~~~~~~~~~---~~~~~~v~e~pLL~E~-~~~~~~D~vi~V~a~~e~ri~Rl~~R~----~~~~ 148 (180)
T PF01121_consen 77 EKLKKLENIIHPLIREEIEKFIKRN---KSEKVVVVEIPLLFES-GLEKLCDEVIVVYAPEEIRIKRLMERD----GLSE 148 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---HSTSEEEEE-TTTTTT-TGGGGSSEEEEEE--HHHHHHHHHHHH----TSTH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhc---cCCCEEEEEcchhhhh-hHhhhhceEEEEECCHHHHHHHHHhhC----CCcH
Confidence 3344445677887655555443221 1227899999999975 688899999999999999999999996 4555
Q ss_pred HHHHHHHHhhccchhhccccCCCCcccEEEECCC
Q psy9618 195 EGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGG 228 (542)
Q Consensus 195 ~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~ 228 (542)
+........+. +.. ..++.||+||.|++
T Consensus 149 ~~~~~ri~~Q~-~~~-----~k~~~ad~vI~N~g 176 (180)
T PF01121_consen 149 EEAEARIASQM-PDE-----EKRKRADFVIDNNG 176 (180)
T ss_dssp HHHHHHHHTS---HH-----HHHHH-SEEEE-SS
T ss_pred HHHHHHHHhCC-CHH-----HHHHhCCEEEECCC
Confidence 55444333322 221 12467999999987
No 43
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.62 E-value=3.6e-15 Score=156.85 Aligned_cols=174 Identities=26% Similarity=0.392 Sum_probs=120.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhhhchhcHHHHHH-Hhcccc----CC-CCCccccHHhH
Q psy9618 39 EQVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVLNEEQHKK-AAQNEY----NF-DHPDAFDFELL 110 (542)
Q Consensus 39 ~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddfy~~l~~e~~~~-~~~~~~----~f-d~p~a~D~~lL 110 (542)
....|++|||+|++||||||+++.|...+.. ..+.+|++|+||. +.+++.. ...+.. .+ +.|+..|..++
T Consensus 208 ~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL--t~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg 285 (460)
T PLN03046 208 DDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL--TAEGQAELRERNPGNALLELRGNAGSHDLQFS 285 (460)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC--ChHHHHHHHhhCccchhhcccCCCccccHhhH
Confidence 3457899999999999999999999888742 2366789999995 3333322 222211 12 56789999888
Q ss_pred HHHHHHh----HcCCeeccceechhhchhc----c--cccc-cCCCcEEEEEccccccCh--------------------
Q psy9618 111 LPTLQRL----KEGKKVDVPIYNFVTHSRE----T--RTKP-MYGANVIIFEGILAFHNP-------------------- 159 (542)
Q Consensus 111 ~~~L~~l----k~g~~v~~P~yd~~~~~~~----~--~~~~-~~~~~vVIvEGi~~~~~~-------------------- 159 (542)
.+.|.++ ++|+.+.+|+||+..|... . .|.. ..+.+|||+||+++...+
T Consensus 286 ~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L 365 (460)
T PLN03046 286 VETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNL 365 (460)
T ss_pred HHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHH
Confidence 8888877 5788999999999998732 2 2333 356799999999766532
Q ss_pred -----hhhccCCEEEEEECC-HHHHHHHhhhcchhhh-----cCCHHHHHHHHHhhccchhhccccC
Q psy9618 160 -----QVLELLDMKVFVDTD-ADVRLARRLKRDILAR-----GRDLEGVIKQYVNMVKPAFSTFIAP 215 (542)
Q Consensus 160 -----~l~~l~Dl~IfLdad-~d~rl~Rrl~Rd~~~r-----gr~~~~vl~q~~~~v~p~y~~~i~p 215 (542)
.+...+|..|+|+++ .+...++|+++....+ |.+.++ +.+|.++..|.|+-|...
T Consensus 366 ~~Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeq-V~~FV~~YmPaY~~y~~~ 431 (460)
T PLN03046 366 EAYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEE-VMDFVSRYLPAYKAYLPT 431 (460)
T ss_pred HHHHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHhhhHHHHHHHH
Confidence 122346777888875 4777777777665443 344444 556667777888776544
No 44
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.62 E-value=8.7e-17 Score=160.78 Aligned_cols=112 Identities=9% Similarity=-0.016 Sum_probs=96.9
Q ss_pred hhhhhccccccccccc----------cccccccccccccCceEEEEecccc---ccChHHHhhhcccccccccccCCCCc
Q psy9618 301 GYIRRMWSVDVPIYNF----------VTHSRETRTKPMYGANVIIFEGILA---FHNPQVLERGFKLRPTLAQSYAGQPL 367 (542)
Q Consensus 301 ~~~~~g~~v~~P~y~f----------~~~~r~~~~~~~~~~~vii~EGi~~---l~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (542)
..|++|+++++|+|+| .+|.|.+.+..++|++|||+||||+ ++++.+++++
T Consensus 78 ~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~---------------- 141 (277)
T cd02029 78 RTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTEGYNVAQHA---------------- 141 (277)
T ss_pred HHHHcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccccccHHHHHhC----------------
Confidence 4678999999999987 3455544455579999999999995 5558999985
Q ss_pred hhhhccCCCCCCceeecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHH
Q psy9618 368 PEALALLPETPQIKGLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIF 447 (542)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~ 447 (542)
|+||||+++.++|++|||.||+.+||++.+++ +.+|+|.. +++..||.
T Consensus 142 -----------DlkIfVd~~~dlr~irRI~RD~~ERGrs~EsV--------------------i~qilrrm-pdy~~yI~ 189 (277)
T cd02029 142 -----------DLLVGVVPIINLEWIQKIHRDTAERGYSAEAV--------------------MDTILRRM-PDYINYIC 189 (277)
T ss_pred -----------CeEEEecCcHHHHHHHHHHhhhHhhCCCHHHH--------------------HHHHHHhC-chHHhhCC
Confidence 99999999999999999999999999999984 78899966 99999999
Q ss_pred HHHHHHHHHHHHH
Q psy9618 448 YSKRLIRLVIEFA 460 (542)
Q Consensus 448 ~~~rla~llie~a 460 (542)
|....+++.++..
T Consensus 190 PQ~~~tDI~fqr~ 202 (277)
T cd02029 190 PQFSRTDINFQRV 202 (277)
T ss_pred cccccCcEEEecc
Confidence 9999999988763
No 45
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.61 E-value=3.1e-15 Score=137.64 Aligned_cols=159 Identities=25% Similarity=0.330 Sum_probs=104.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHH-HHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ-HKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~-~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
++|.|+|++||||||+|+.||+++|++++ |++.+|+.+..+. ......+++.-
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~v---saG~iFR~~A~e~gmsl~ef~~~AE----------------------- 54 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLV---SAGTIFREMARERGMSLEEFSRYAE----------------------- 54 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCcee---eccHHHHHHHHHcCCCHHHHHHHHh-----------------------
Confidence 47999999999999999999999999977 8999998654331 01111111111
Q ss_pred eccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHH
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYV 202 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~ 202 (542)
..|.+|.....++.+... .+-+|+||-++.+. .+...|++|||.||.++|.+|..+|+ |.+.+.......
T Consensus 55 -~~p~iD~~iD~rq~e~a~---~~nvVlegrLA~Wi--~k~~adlkI~L~Apl~vRa~Ria~RE----gi~~~~a~~~~~ 124 (179)
T COG1102 55 -EDPEIDKEIDRRQKELAK---EGNVVLEGRLAGWI--VREYADLKIWLKAPLEVRAERIAKRE----GIDVDEALAETV 124 (179)
T ss_pred -cCchhhHHHHHHHHHHHH---cCCeEEhhhhHHHH--hccccceEEEEeCcHHHHHHHHHHhc----CCCHHHHHHHHH
Confidence 134444444444433222 34589999887653 23567999999999999999999997 456666666555
Q ss_pred hhccchhhccccC------CCCcccEEEECCCCCHHHHHHHH
Q psy9618 203 NMVKPAFSTFIAP------SMVHADIIVPRGGENCVAIDLIV 238 (542)
Q Consensus 203 ~~v~p~y~~~i~p------~~~~ADiVI~~~~~n~~ai~~iv 238 (542)
++.+....+|..- .....|+||+++.-+...+-.++
T Consensus 125 ~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il 166 (179)
T COG1102 125 EREESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLIL 166 (179)
T ss_pred HHHHHHHHHHHHHhCCCCccceeeEEEEecccCCHHHHHHHH
Confidence 5444333333221 25678999998876554443333
No 46
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.60 E-value=4.6e-15 Score=145.06 Aligned_cols=186 Identities=20% Similarity=0.285 Sum_probs=111.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHH-----HHHHhccccCCCC--Cc--cccHHhHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ-----HKKAAQNEYNFDH--PD--AFDFELLL 111 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~-----~~~~~~~~~~fd~--p~--a~D~~lL~ 111 (542)
+.+++|||+|++||||||+++.|.+ +|++ ++++|...+.+..+. ......+...+.. .+ .+|...|.
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~---v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~ 78 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCE---LFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIA 78 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCe---EEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHH
Confidence 3468999999999999999999976 7765 459998877654211 1111222222211 12 25665555
Q ss_pred HHH----HHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcch
Q psy9618 112 PTL----QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDI 187 (542)
Q Consensus 112 ~~L----~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~ 187 (542)
+.+ ..++.-+.+.+|.+........... ...+..++++|+++++.. .+...||.+|+|+||.+++++|+.+|+.
T Consensus 79 ~~vf~~~~~~~~l~~i~hp~i~~~~~~~i~~~-~~~~~~vvv~e~pLL~e~-~~~~~~d~ii~V~a~~e~~~~Rl~~R~~ 156 (208)
T PRK14731 79 QVVFSDPEKLGALNRLIHPKVFAAFQRAVDRA-ARRGKRILVKEAAILFES-GGDAGLDFIVVVAADTELRLERAVQRGM 156 (208)
T ss_pred HHHhCCHHHHHHHHHHHCHHHHHHHHHHHHHH-HhcCCCEEEEEeeeeeec-CchhcCCeEEEEECCHHHHHHHHHHcCC
Confidence 444 2222234566776543332222111 123457899999988864 5667899999999999999999999974
Q ss_pred hhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 188 LARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 188 ~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
. +.+........+ .+... ..+.||++|.|++ +. +.+.+++.+.++
T Consensus 157 ~----s~e~~~~Ri~~q-~~~~~-----~~~~ad~vI~N~g-~~---e~l~~~i~~~~~ 201 (208)
T PRK14731 157 G----SREEIRRRIAAQ-WPQEK-----LIERADYVIYNNG-TL---DELKAQTEQLYQ 201 (208)
T ss_pred C----CHHHHHHHHHHc-CChHH-----HHHhCCEEEECCC-CH---HHHHHHHHHHHH
Confidence 2 334433333221 12111 1246899999887 33 444444544443
No 47
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.59 E-value=3.2e-17 Score=158.26 Aligned_cols=111 Identities=20% Similarity=0.289 Sum_probs=93.9
Q ss_pred hhhhhccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCc
Q psy9618 301 GYIRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQI 380 (542)
Q Consensus 301 ~~~~~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (542)
..|++|+++++|+|||.++.+.+....+.|.+||||||+|+|+++.++++. |+
T Consensus 77 ~~L~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~~l~---------------------------D~ 129 (194)
T PF00485_consen 77 KALKNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELRDLF---------------------------DL 129 (194)
T ss_dssp HHHHTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHGGG----------------------------SE
T ss_pred HHHhCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeecccc---------------------------ee
Confidence 357889999999999999999887777889999999999999999999975 99
Q ss_pred eeecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHH
Q psy9618 381 KGLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEF 459 (542)
Q Consensus 381 ~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~ 459 (542)
++|++++.++++.||+.||+.+||++.+.. +.++. .+.+....|++|.+..|+++|+.
T Consensus 130 ~ifld~~~~~~l~Rri~RD~~~rG~~~~~~--------------------~~~~~-~~~~~~~~~I~p~~~~ADivi~~ 187 (194)
T PF00485_consen 130 KIFLDADEDLRLERRIQRDVAERGRSPEEV--------------------IAQYE-RVRPGYERYIEPQKERADIVIPS 187 (194)
T ss_dssp EEEEEE-HHHHHHHHHHHHHHHS-S-HHHH--------------------HHHHH-THHHHHHHCTGGGGGG-SEEEES
T ss_pred EEEecccHHHHHHHHhhhhccccCCcceeE--------------------EEEee-cCChhhhhheeccccccEEEECC
Confidence 999999999999999999999999988762 45555 78899999999999999887754
No 48
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.56 E-value=1.6e-14 Score=157.41 Aligned_cols=193 Identities=20% Similarity=0.209 Sum_probs=122.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhH-
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLK- 118 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk- 118 (542)
...+.+|+|+|+|||||||+|+.|+++||+.++ ++|++|+.++..... ..++++++.++ ..+.+.++-..
T Consensus 281 ~~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~---d~g~~YR~~a~~~l~----~~~~~~~~~~l--~~l~~~l~~~~~ 351 (512)
T PRK13477 281 MKRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYL---DTGAMYRAVTWLVLQ----EGIDPQDEEAL--AELLSDLKIELK 351 (512)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCeEe---cCCceehHHHHHHHH----cCcCCcCHHHH--HHHHhcCCeeec
Confidence 336789999999999999999999999996544 999999975443221 23445444432 22222222111
Q ss_pred ----cCCeeccceechhhchhc---------------------ccccccCCCcEEEEEccccccChhhhccCCEEEEEEC
Q psy9618 119 ----EGKKVDVPIYNFVTHSRE---------------------TRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDT 173 (542)
Q Consensus 119 ----~g~~v~~P~yd~~~~~~~---------------------~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLda 173 (542)
.+..+.++.++...+-+. ..+......+-+|+||-.... .+.+..|++|||+|
T Consensus 352 ~~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigt--vV~P~AdlKIfL~A 429 (512)
T PRK13477 352 PSSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGT--HVFPDAELKIFLTA 429 (512)
T ss_pred cCCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccccee--EEcCCCCEEEEEEC
Confidence 112344444443333221 011111122238999963321 12233599999999
Q ss_pred CHHHHHHHhhhcchhhhcC---CHHHHHHHHHhhccchhhccccCCCCc-ccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 174 DADVRLARRLKRDILARGR---DLEGVIKQYVNMVKPAFSTFIAPSMVH-ADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 174 d~d~rl~Rrl~Rd~~~rgr---~~~~vl~q~~~~v~p~y~~~i~p~~~~-ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
+.+++.+||.++. ..||. +.+.+.+.+.++...+..+.+.|.... ++++|++++.+ ++++++.|...++.
T Consensus 430 s~evRa~RR~~~l-~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~ls---ieeVv~~Il~~i~~ 503 (512)
T PRK13477 430 SVEERARRRALDL-QAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLS---IEEVVDKIIDLYRD 503 (512)
T ss_pred CHHHHHHHHHhhh-hhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCC---HHHHHHHHHHHHHH
Confidence 9999999987653 23442 467888888888888888888887776 66888877643 45777888777753
No 49
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.55 E-value=1.2e-14 Score=141.14 Aligned_cols=181 Identities=22% Similarity=0.254 Sum_probs=107.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHH-----HHHHhccccCCCCCccccHHhHHHHH---
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ-----HKKAAQNEYNFDHPDAFDFELLLPTL--- 114 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~-----~~~~~~~~~~fd~p~a~D~~lL~~~L--- 114 (542)
+++|||+|++||||||+|+.+++ +|++.+ ++|++.|.+.+.. ......+....+..+.+|...|.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vi---daD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~ 77 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVI---DADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFND 77 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEE---EccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCC
Confidence 68999999999999999999888 988754 9999988543321 11122222222234455555555544
Q ss_pred -HHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 115 -QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 115 -~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
...+.-+.+.+|....... ...+. ....++++|-.++++.. ....||.+|.|+||.+++++|.++|+. .+
T Consensus 78 ~~~~~~Le~i~hPli~~~~~-~~~~~---~~~~~~~~eiplL~e~~-~~~~~d~Vi~V~a~~e~r~eRl~~R~~----~~ 148 (201)
T COG0237 78 PEARLKLEKILHPLIRAEIK-VVIDG---ARSPYVVLEIPLLFEAG-GEKYFDKVIVVYAPPEIRLERLMKRDG----LD 148 (201)
T ss_pred HHHHHHHHHhhhHHHHHHHH-HHHHH---hhCCceEEEchHHHhcc-ccccCCEEEEEECCHHHHHHHHHhcCC----CC
Confidence 1122223455665433222 11111 11127888888887542 344589999999999999999999973 23
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
.+........ -.+..+ ....||+|+.|++.- . ...+++.+.++
T Consensus 149 ~e~~~~~~~~-Q~~~~e-----k~~~ad~vi~n~~~i-~---~l~~~i~~~~~ 191 (201)
T COG0237 149 EEDAEARLAS-QRDLEE-----KLALADVVIDNDGSI-E---NLLEQIEKLLK 191 (201)
T ss_pred HHHHHHHHHh-cCCHHH-----HHhhcCChhhcCCCH-H---HHHHHHHHHHH
Confidence 2222222222 122222 257799999999833 2 34444444443
No 50
>PLN02796 D-glycerate 3-kinase
Probab=99.54 E-value=5.2e-14 Score=145.88 Aligned_cols=173 Identities=26% Similarity=0.416 Sum_probs=116.0
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhhchhcHHHHH-HHhcccc--CC---CCCccccHHh
Q psy9618 38 GEQVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVLNEEQHK-KAAQNEY--NF---DHPDAFDFEL 109 (542)
Q Consensus 38 ~~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy~~l~~e~~~-~~~~~~~--~f---d~p~a~D~~l 109 (542)
|....|++|||+|++||||||+++.|...+... .+..|++|+||.. .++.. .+..+.. -| +.|.++|.++
T Consensus 95 G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt--~~e~~~L~~q~P~n~Ll~~RG~PgThDl~L 172 (347)
T PLN02796 95 GDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT--AADQAKLAEANPGNALLELRGNAGSHDLAL 172 (347)
T ss_pred CCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc--hhhHHHHHhhCcchhhhhcCCCCchhHHHH
Confidence 444578999999999999999999999998643 3567899999963 33222 2211111 12 5688999999
Q ss_pred HHHHHHHhH----cCCeeccceechhhchhcc------ccccc-CCCcEEEEEccccccCh-------------------
Q psy9618 110 LLPTLQRLK----EGKKVDVPIYNFVTHSRET------RTKPM-YGANVIIFEGILAFHNP------------------- 159 (542)
Q Consensus 110 L~~~L~~lk----~g~~v~~P~yd~~~~~~~~------~~~~~-~~~~vVIvEGi~~~~~~------------------- 159 (542)
+.+.|..++ .++.+.+|.||+..|.... .|..+ .+.+|||+||+++-..+
T Consensus 173 l~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~~~~~l~~vN~~ 252 (347)
T PLN02796 173 GVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKAVDPQLEVVNKN 252 (347)
T ss_pred HHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhccChhHHHHHHH
Confidence 999999998 5788999999999987432 23343 56799999999764422
Q ss_pred ------hhhccCCEEEEEECC-HHHHHHHhhhcchhh-----hcCCHHHHHHHHHhhccchhhccc
Q psy9618 160 ------QVLELLDMKVFVDTD-ADVRLARRLKRDILA-----RGRDLEGVIKQYVNMVKPAFSTFI 213 (542)
Q Consensus 160 ------~l~~l~Dl~IfLdad-~d~rl~Rrl~Rd~~~-----rgr~~~~vl~q~~~~v~p~y~~~i 213 (542)
.+..++|..|+|+++ .+.-.++|+.....- .|.+.++ +.+|.++..|.|+-|.
T Consensus 253 L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~-v~~FV~~~mP~y~~y~ 317 (347)
T PLN02796 253 LEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEE-VADFVSRYMPAYKAYL 317 (347)
T ss_pred HHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHHHHHHH
Confidence 233356888888875 555555554432111 1344444 4445555666666553
No 51
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.54 E-value=3.6e-14 Score=136.25 Aligned_cols=168 Identities=20% Similarity=0.268 Sum_probs=111.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHH-----HHHhccccCCCCCccccHHhHHHHH----H
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQH-----KKAAQNEYNFDHPDAFDFELLLPTL----Q 115 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~-----~~~~~~~~~fd~p~a~D~~lL~~~L----~ 115 (542)
+|||+|++||||||+++.|++..|+++ +++|.+.+.+..... -....+.-.++..+.+|...|.+.+ +
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~---i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~ 77 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPV---IDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPE 77 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeE---EeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHH
Confidence 589999999999999999998876664 499999775443211 1222333334445567766666555 2
Q ss_pred HhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHH
Q psy9618 116 RLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLE 195 (542)
Q Consensus 116 ~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~ 195 (542)
.++.-+.+.+|.+............ ....+++++..+.++. .+...||.+|||+++.+++++|+.+|+ |.+.+
T Consensus 78 ~~~~le~ilhP~i~~~i~~~i~~~~--~~~~~vvi~~pll~e~-~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~~ 150 (188)
T TIGR00152 78 ELKWLNNLLHPLIREWMKKLLAQFQ--SKLAYVLLDVPLLFEN-KLRSLCDRVIVVDVSPQLQLERLMQRD----NLTEE 150 (188)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhh--cCCCEEEEEchHhhhC-CcHHhCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 2222245667766544443332211 1225788998888754 577899999999999999999999997 45566
Q ss_pred HHHHHHHhhccchhhccccCCCCcccEEEECCC
Q psy9618 196 GVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGG 228 (542)
Q Consensus 196 ~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~ 228 (542)
.+...+..+. +. ...+..||++|.|++
T Consensus 151 ~~~~r~~~q~-~~-----~~~~~~ad~vI~N~~ 177 (188)
T TIGR00152 151 EVQKRLASQM-DI-----EERLARADDVIDNSA 177 (188)
T ss_pred HHHHHHHhcC-CH-----HHHHHhCCEEEECCC
Confidence 6655555432 21 234667999999987
No 52
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.53 E-value=3.2e-14 Score=151.85 Aligned_cols=169 Identities=20% Similarity=0.190 Sum_probs=108.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHH-----HHHhccccCCCCCccccHHhHHHHHH--
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQH-----KKAAQNEYNFDHPDAFDFELLLPTLQ-- 115 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~-----~~~~~~~~~fd~p~a~D~~lL~~~L~-- 115 (542)
|.+|||+|++||||||+++.|++ +|++. |++|...+.+..... -....++-.++..+.+|...|.+.+-
T Consensus 1 m~~IgltG~igsGKStv~~~L~~-~G~~v---idaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~ 76 (395)
T PRK03333 1 MLRIGLTGGIGAGKSTVAARLAE-LGAVV---VDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFAD 76 (395)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeE---EehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCC
Confidence 36899999999999999999987 88764 599999876443211 11222333344567888888877762
Q ss_pred --HhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 116 --RLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 116 --~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
.++.-+.+.+|.+-......... ..+..++++|..++++ ..+...||.+|||+||.+++++|..+|+ |.+
T Consensus 77 ~~~~~~le~i~hP~I~~~i~~~i~~---~~~~~vvv~eipLL~E-~~~~~~~D~iI~V~ap~e~ri~Rl~~rR----g~s 148 (395)
T PRK03333 77 DEARAVLNGIVHPLVGARRAELIAA---APEDAVVVEDIPLLVE-SGMAPLFHLVVVVDADVEVRVRRLVEQR----GMA 148 (395)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh---cCCCCEEEEEeeeeec-CCchhhCCEEEEEECCHHHHHHHHHhcC----CCC
Confidence 23333455666554332222211 1233455555555554 4677899999999999999999988753 455
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEECCCC
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGE 229 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~ 229 (542)
.+.....+..+.. .++.++.||++|.|+++
T Consensus 149 ~~~a~~ri~~Q~~------~e~k~~~AD~vIdN~~s 178 (395)
T PRK03333 149 EADARARIAAQAS------DEQRRAVADVWLDNSGT 178 (395)
T ss_pred HHHHHHHHHhcCC------hHHHHHhCCEEEECCCC
Confidence 5555444444321 12346779999998873
No 53
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.52 E-value=2.8e-15 Score=163.37 Aligned_cols=111 Identities=22% Similarity=0.244 Sum_probs=99.9
Q ss_pred hhhhhccccccccccccccccc-cccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCC
Q psy9618 301 GYIRRMWSVDVPIYNFVTHSRE-TRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQ 379 (542)
Q Consensus 301 ~~~~~g~~v~~P~y~f~~~~r~-~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (542)
..|++|++|.+|+|||.+|.|. .++..+++++||||||||+|+ +.+++++ |
T Consensus 127 ~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~-~~Lr~Ll---------------------------D 178 (656)
T PLN02318 127 HDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALS-EKLRPLL---------------------------D 178 (656)
T ss_pred HHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhcc-HhHHhhC---------------------------C
Confidence 3577899999999999999996 457788999999999999997 6788764 9
Q ss_pred ceeecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHH
Q psy9618 380 IKGLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEF 459 (542)
Q Consensus 380 ~~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~ 459 (542)
++|||+++.++++.||+.||+.+||+..+.. +..+...+.+++..|+.|..+.|+++|..
T Consensus 179 lkIFVDtdvDirL~RRI~RD~~eRGrs~EsV--------------------i~q~~~~VkP~y~~FIeP~kk~ADIII~n 238 (656)
T PLN02318 179 LRVSVTGGVHFDLVKRVLRDIQRAGQEPEEI--------------------IHQISETVYPMYKAFIEPDLQTAHIKIVN 238 (656)
T ss_pred EEEEEcCCccHHHHHHHHHHHHHhCCCHHHH--------------------HHHHHHhhcchHHHHhCcchhcceEEEec
Confidence 9999999999999999999999999987763 67788999999999999999999999954
No 54
>KOG3220|consensus
Probab=99.50 E-value=6.6e-14 Score=132.93 Aligned_cols=187 Identities=20% Similarity=0.276 Sum_probs=119.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcH-----HHHHHHhccccCCCCCccccHHhHHHHH---
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNE-----EQHKKAAQNEYNFDHPDAFDFELLLPTL--- 114 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~-----e~~~~~~~~~~~fd~p~a~D~~lL~~~L--- 114 (542)
|++||++|++||||||+++.+ +.+|+|. |++|..-|..-+ -..-....+....-..+.++.+.|-+.+
T Consensus 1 M~iVGLTGgiatGKStVs~~f-~~~G~~v---IDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~ 76 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVF-KALGIPV---IDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSD 76 (225)
T ss_pred CeEEEeecccccChHHHHHHH-HHcCCcE---ecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCC
Confidence 589999999999999999977 5899874 499988764321 0111111221112233455555555444
Q ss_pred -HHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 115 -QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 115 -~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
+..+.-+.+.+|.+....-... ....+.|+.++|+|-+++|+. .+.+++...|.|.||.++.++|+++||...+...
T Consensus 77 ~~~r~~Ln~IthP~Ir~em~ke~-~~~~l~G~r~ivlDiPLLFE~-~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dA 154 (225)
T KOG3220|consen 77 PKKRQALNKITHPAIRKEMFKEI-LKLLLRGYRVIVLDIPLLFEA-KLLKICHKTVVVTCDEELQLERLVERDELSEEDA 154 (225)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH-HHHHhcCCeEEEEechHHHHH-hHHhheeeEEEEEECcHHHHHHHHHhccccHHHH
Confidence 1122224567777654333221 112347889999999999976 6888999999999999999999999984332221
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
...+..|.. ++..++.||+||+|++ +..+..+.+.++..++.
T Consensus 155 e~Rl~sQmp----------~~~k~~~a~~Vi~Nng-~~~~l~~qv~~v~~~~~ 196 (225)
T KOG3220|consen 155 ENRLQSQMP----------LEKKCELADVVIDNNG-SLEDLYEQVEKVLALLQ 196 (225)
T ss_pred HHHHHhcCC----------HHHHHHhhheeecCCC-ChHHHHHHHHHHHHHhc
Confidence 222222221 1234567999999998 45566677777776665
No 55
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.47 E-value=1.3e-14 Score=138.53 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=71.2
Q ss_pred hhhccccccccccccccccccc-cccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCce
Q psy9618 303 IRRMWSVDVPIYNFVTHSRETR-TKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQIK 381 (542)
Q Consensus 303 ~~~g~~v~~P~y~f~~~~r~~~-~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (542)
|++|+++.+|.|||.++.|... ...+++.+||||||+|+|++ .++++ .|++
T Consensus 70 l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~-~l~~~---------------------------~d~~ 121 (179)
T cd02028 70 LLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE-RLRSL---------------------------LDIR 121 (179)
T ss_pred HHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH-hHHhh---------------------------cCEE
Confidence 5679999999999999999754 67889999999999999975 77775 3999
Q ss_pred eecccCCcc-hhhhhhhcccccCcchhcc
Q psy9618 382 GLHTAGNRT-RVSRVLLRGFKLRPTLAQS 409 (542)
Q Consensus 382 ~~~~~~~~~-rl~rr~~Rd~~~r~~~~~~ 409 (542)
||++++.++ |+.||+.||+.+||++.+.
T Consensus 122 I~vd~~~~~~rl~rri~RD~~~rg~~~~~ 150 (179)
T cd02028 122 VAVSGGVHLNRLLRRVVRDIQFRGYSAEL 150 (179)
T ss_pred EEEeCCccHHHHHHHHHHhHHhhCCCHHH
Confidence 999999999 9999999999999998876
No 56
>PRK06217 hypothetical protein; Validated
Probab=99.46 E-value=9.1e-13 Score=126.05 Aligned_cols=107 Identities=24% Similarity=0.367 Sum_probs=73.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
|+.|+|.|++||||||+|++|++.||++++ ++|++++... ...|......+ +.+...++.+..
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~---~~D~~~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~--- 63 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHL---DTDDYFWLPT----------DPPFTTKRPPE-ERLRLLLEDLRP--- 63 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEE---EcCceeeccC----------CCCccccCCHH-HHHHHHHHHHhc---
Confidence 367999999999999999999999998866 9999987311 11011111111 112222222211
Q ss_pred eccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchh
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDIL 188 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~ 188 (542)
.+.+|+||.+......+...+|.+|||++|.+++++|+.+|...
T Consensus 64 ----------------------~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 64 ----------------------REGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred ----------------------CCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCccc
Confidence 12389999876544556678999999999999999999999754
No 57
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.46 E-value=9.3e-13 Score=120.07 Aligned_cols=145 Identities=24% Similarity=0.327 Sum_probs=96.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCeec
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVD 124 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v~ 124 (542)
+|+|+|++||||||+|+.|++.+|++++ ++|.... +.......... .. ..++ +.+.+.+..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~---~~~~i~~----e~~~~~~~~~~--~~-~~i~-~~l~~~~~~~------- 62 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYL---DTGGIRT----EEVGKLASEVA--AI-PEVR-KALDERQREL------- 62 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcee---ccccCCH----HHHHHHHHHhc--cc-HhHH-HHHHHHHHHH-------
Confidence 5899999999999999999999999876 7774432 11111000000 00 0000 1111111111
Q ss_pred cceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhh-hcCCHHHHHHHHHh
Q psy9618 125 VPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILA-RGRDLEGVIKQYVN 203 (542)
Q Consensus 125 ~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~-rgr~~~~vl~q~~~ 203 (542)
...+.+|+||..+.. .+.+.+|++|||++|.+++++|+.+|.... ++.+.+++.+++.+
T Consensus 63 ------------------~~~~~~Vidg~~~~~--~~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~ 122 (147)
T cd02020 63 ------------------AKKPGIVLEGRDIGT--VVFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIE 122 (147)
T ss_pred ------------------hhCCCEEEEeeeeee--EEcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 112348889986532 124567999999999999999999986332 25688888999999
Q ss_pred hccchhhccccCCC-CcccEEEECC
Q psy9618 204 MVKPAFSTFIAPSM-VHADIIVPRG 227 (542)
Q Consensus 204 ~v~p~y~~~i~p~~-~~ADiVI~~~ 227 (542)
+..+.+.+|..++. ...|++|+++
T Consensus 123 ~d~~~~~~~~~~~~~~~~dl~i~~~ 147 (147)
T cd02020 123 RDERDSTRYVAPLKLAEDAIVIDTS 147 (147)
T ss_pred HHHHhhhcccccccCCCCcEEEeCc
Confidence 88888888888886 4567888753
No 58
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.45 E-value=6.2e-13 Score=150.86 Aligned_cols=186 Identities=20% Similarity=0.241 Sum_probs=121.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhH---
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLK--- 118 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk--- 118 (542)
...+|.|.||+||||||+|+.|+++||++++ ++|.+|+.++...... ..+++ |.+.+.+.+..++
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~ 508 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYL---DSGALYRLTALAALRA----GVALD-----DEAAIAALARGLPVRF 508 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEe---cHHHhhhHHHHHHHHc----CcCCC-----CHHHHHHHHhcCCeee
Confidence 3569999999999999999999999999876 9999999764322211 11111 1112222221111
Q ss_pred --------------------cCC----eeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECC
Q psy9618 119 --------------------EGK----KVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTD 174 (542)
Q Consensus 119 --------------------~g~----~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad 174 (542)
-+. -..+|.++......+.+.. ...-+|+||--.-. .+.+-.|+||||+|+
T Consensus 509 ~~~~~~~~~~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~---~~~~~v~eGRdigt--vv~p~a~~kifl~a~ 583 (661)
T PRK11860 509 EGDRIWLGGEDVTDAIRTEAAGMGASRVSALPAVRAALLALQRSFR---RLPGLVADGRDMGT--VIFPDAALKVFLTAS 583 (661)
T ss_pred cCCeEEECCeEchhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHh---hCCCEEEECCCCcc--EECCCCCeEEEEECC
Confidence 000 0124555554444443321 12238999963321 123335999999999
Q ss_pred HHHHHHHhhhcchhhhc--CCHHHHHHHHHhhccchhhccccCCCCcccEEE-ECCCCCHHHHHHHHHHHHHHHHHh
Q psy9618 175 ADVRLARRLKRDILARG--RDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIV-PRGGENCVAIDLIVQHIHSQLQAV 248 (542)
Q Consensus 175 ~d~rl~Rrl~Rd~~~rg--r~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI-~~~~~n~~ai~~iv~~I~~~L~~k 248 (542)
.++|.+||.+... ++| -+.++++++..+++..+..+.+.|.+...|.++ +++.. .++++++.|.+.++.+
T Consensus 584 ~~~Ra~Rr~~~~~-~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~---~~~~v~~~i~~~i~~~ 656 (661)
T PRK11860 584 AEARAERRYKQLI-SKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDL---TIEQAVAQVLDWWQER 656 (661)
T ss_pred hhHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCC---CHHHHHHHHHHHHHhh
Confidence 9999999987532 334 378999999999999999999999988766555 44443 4578888888877653
No 59
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.43 E-value=1.2e-12 Score=128.91 Aligned_cols=190 Identities=20% Similarity=0.240 Sum_probs=116.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcH-----------HH-HH-HHhccccCCC--C-C--cc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNE-----------EQ-HK-KAAQNEYNFD--H-P--DA 104 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~-----------e~-~~-~~~~~~~~fd--~-p--~a 104 (542)
+++|+|+|++||||||+++.|+++||++++ ++|++|+.++. +. .. ........|. + . -.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~---~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYL---DSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVF 78 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcee---eCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEE
Confidence 379999999999999999999999998766 89999975431 11 11 0111111121 1 0 11
Q ss_pred ccHHhHHHHHHHhHc----CCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHH
Q psy9618 105 FDFELLLPTLQRLKE----GKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLA 180 (542)
Q Consensus 105 ~D~~lL~~~L~~lk~----g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~ 180 (542)
+|.+.+.+.|..-.. .....+|.++......+.+.. ..+-+|+||..... .+.+..+++|||++|.+++.+
T Consensus 79 l~~~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a---~~~~~Vi~Gr~~~~--~v~~~a~~~ifl~a~~~~Ra~ 153 (217)
T TIGR00017 79 LNGEDVSEAIRTQEVANAASKVAVFPKVREALLKRQQALA---KNDGIIADGRDIGT--VVFPNAEVKIFLDASVEERAK 153 (217)
T ss_pred EcCcchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hcCCEEEEEcCcce--EEeCCCCEEEEEECCHHHHHH
Confidence 333444443322111 122346666655555543322 22348999975322 133446899999999999999
Q ss_pred Hhhhcchhh-hcCCHHHHHHHHHhhccchhhccccCCCCccc-EEEECCCCCHHHHHHHHHHHHH
Q psy9618 181 RRLKRDILA-RGRDLEGVIKQYVNMVKPAFSTFIAPSMVHAD-IIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 181 Rrl~Rd~~~-rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~AD-iVI~~~~~n~~ai~~iv~~I~~ 243 (542)
|+..|.... .+.+.+++.+.+.++..-+..+...|.....| ++|+++.. .++++++.|.+
T Consensus 154 Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~l---~ieevv~~I~~ 215 (217)
T TIGR00017 154 RRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSNL---SIDEVVEKILE 215 (217)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCCC---CHHHHHHHHHH
Confidence 998886432 13467888888888866666666677655444 55665553 34677777654
No 60
>KOG4203|consensus
Probab=99.43 E-value=6.2e-14 Score=151.85 Aligned_cols=114 Identities=32% Similarity=0.458 Sum_probs=103.8
Q ss_pred hhhhhcccccccccccccccc-ccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCC
Q psy9618 301 GYIRRMWSVDVPIYNFVTHSR-ETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQ 379 (542)
Q Consensus 301 ~~~~~g~~v~~P~y~f~~~~r-~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (542)
+++.+|++|++|.|+|.+|+| .+++..++|++++|+|||++||++++++++ +
T Consensus 123 ~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~---------------------------~ 175 (473)
T KOG4203|consen 123 KNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLF---------------------------T 175 (473)
T ss_pred hcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHh---------------------------c
Confidence 577899999999999999999 566889999999999999999999999986 9
Q ss_pred ceeecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHH
Q psy9618 380 IKGLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEF 459 (542)
Q Consensus 380 ~~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~ 459 (542)
+|+|+|++.+.|+.||+.||+.+||+.++.. +.++....+++..+|+.+++.+++++++.
T Consensus 176 ~k~fvd~~~d~rla~ri~r~~~~~g~~l~~i--------------------~~q~~~f~kp~~~~~i~p~~~~ad~ii~~ 235 (473)
T KOG4203|consen 176 MKLFVDTDADVRLARRILRDIVERGRDLESI--------------------LTQYSTFVKPAFEEFILPTKKYADVIIPR 235 (473)
T ss_pred ceEEEecCcchhhHHHHhcchhhhcccHHHH--------------------HHHHHhhcCchHHHHhhHHHHhhhheeec
Confidence 9999999999999999999999999988762 34455579999999999999999999998
Q ss_pred Hh
Q psy9618 460 AL 461 (542)
Q Consensus 460 al 461 (542)
.-
T Consensus 236 ~~ 237 (473)
T KOG4203|consen 236 GG 237 (473)
T ss_pred cc
Confidence 53
No 61
>PLN02348 phosphoribulokinase
Probab=99.43 E-value=1.9e-14 Score=151.15 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=96.4
Q ss_pred hhhhhccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCc
Q psy9618 301 GYIRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQI 380 (542)
Q Consensus 301 ~~~~~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (542)
..|++|++|.+|+|||.++.+. ....|+|++||||||+|+|+++.++++. |+
T Consensus 134 ~~Lk~G~~I~~PiYDh~tg~~~-~~e~I~p~~VVIVEGlh~L~~e~lr~l~---------------------------D~ 185 (395)
T PLN02348 134 KALKEGKAVEKPIYNHVTGLLD-PPELIEPPKILVIEGLHPMYDERVRDLL---------------------------DF 185 (395)
T ss_pred HHHHCCCcEEeeccccCCCCcC-CcEEcCCCcEEEEechhhccCccccccC---------------------------cE
Confidence 3567899999999999999764 3457899999999999999998888764 99
Q ss_pred eeecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHH
Q psy9618 381 KGLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFA 460 (542)
Q Consensus 381 ~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~a 460 (542)
++||+++.++|+.||+.||+.+||++.+. ....+..+.+....|+.+.++.|+++|...
T Consensus 186 ~IyVd~~~dvrl~RRI~RD~~eRG~S~Ee---------------------V~~~i~ar~pd~~~yI~pqk~~ADiVI~v~ 244 (395)
T PLN02348 186 SIYLDISDDVKFAWKIQRDMAERGHSLES---------------------IKASIEARKPDFDAYIDPQKQYADVVIEVL 244 (395)
T ss_pred EEEEECCHHHHHHHHHHhhHhhcCCCHHH---------------------HHHHHHhcCcchhhhcccccccCCEEEEec
Confidence 99999999999999999999999987765 234566688999999999999999988654
No 62
>PRK15453 phosphoribulokinase; Provisional
Probab=99.43 E-value=4e-14 Score=142.77 Aligned_cols=111 Identities=12% Similarity=0.019 Sum_probs=93.6
Q ss_pred hhhhhcccccccccc--c---cccccccccc----cc-cCceEEEEecccccc---ChHHHhhhcccccccccccCCCCc
Q psy9618 301 GYIRRMWSVDVPIYN--F---VTHSRETRTK----PM-YGANVIIFEGILAFH---NPQVLERGFKLRPTLAQSYAGQPL 367 (542)
Q Consensus 301 ~~~~~g~~v~~P~y~--f---~~~~r~~~~~----~~-~~~~vii~EGi~~l~---~~~~~~~~~~~~~~~~~~~~~~~~ 367 (542)
..|++|++++.|+|+ | ..|.|.+++. .+ +|++|||+||||+++ +..++.++
T Consensus 84 ~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~---------------- 147 (290)
T PRK15453 84 REYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHV---------------- 147 (290)
T ss_pred HHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhC----------------
Confidence 356789999999996 6 3477765542 45 689999999999995 46778764
Q ss_pred hhhhccCCCCCCceeecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHH
Q psy9618 368 PEALALLPETPQIKGLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIF 447 (542)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~ 447 (542)
|+||||+++.++|++|||.||+.+||++.+++ +.+|+|. .+++..||.
T Consensus 148 -----------DlkIfVdp~~dlr~irRI~RD~~ERGrs~EsV--------------------i~qilrr-mPdy~~yI~ 195 (290)
T PRK15453 148 -----------DLLIGVVPIVNLEWIQKIHRDTSERGYSREAV--------------------MDTILRR-MPDYINYIT 195 (290)
T ss_pred -----------CeeEeeCCcHhHHHHHHHHhhhHhhCCCHHHH--------------------HHHHHHh-CChHhhhCC
Confidence 99999999999999999999999999999984 7889986 599999999
Q ss_pred HHHHHHHHHHHH
Q psy9618 448 YSKRLIRLVIEF 459 (542)
Q Consensus 448 ~~~rla~llie~ 459 (542)
|....+++.+..
T Consensus 196 PQ~~~tdInfqr 207 (290)
T PRK15453 196 PQFSRTHINFQR 207 (290)
T ss_pred CCcccCcEEEEe
Confidence 999999996554
No 63
>PRK04182 cytidylate kinase; Provisional
Probab=99.41 E-value=3.7e-12 Score=120.22 Aligned_cols=167 Identities=20% Similarity=0.303 Sum_probs=91.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCee
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKV 123 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v 123 (542)
++|+|+|++||||||+|+.|++.||++++ ++|++++..... ..++ ...+. .. ++
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~i---d~~~~~~~~~~~---------~g~~------~~~~~----~~--~~-- 54 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHV---SAGEIFRELAKE---------RGMS------LEEFN----KY--AE-- 54 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEe---cHHHHHHHHHHH---------cCCC------HHHHH----HH--hh--
Confidence 48999999999999999999999998866 888887643211 0000 00000 00 00
Q ss_pred ccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHh
Q psy9618 124 DVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVN 203 (542)
Q Consensus 124 ~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~ 203 (542)
..|.++......... .......+|++|.+.... +.+..+++|||++|.+++++|+..|+. ++.........+
T Consensus 55 ~~~~~~~~~~~~~~~--~~~~~~~~Vi~g~~~~~~--~~~~~~~~V~l~a~~e~~~~Rl~~r~~----~~~~~a~~~~~~ 126 (180)
T PRK04182 55 EDPEIDKEIDRRQLE--IAEKEDNVVLEGRLAGWM--AKDYADLKIWLKAPLEVRAERIAEREG----ISVEEALEETIE 126 (180)
T ss_pred cCchHHHHHHHHHHH--HHhcCCCEEEEEeecceE--ecCCCCEEEEEECCHHHHHHHHHhccC----CCHHHHHHHHHH
Confidence 001111111111000 010123467788643221 112368999999999999999988852 333332222211
Q ss_pred hcc---chhhccc---cCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 204 MVK---PAFSTFI---APSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 204 ~v~---p~y~~~i---~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
... ..|..+. ++....+|++|+++..+ ++.+++.|...++.
T Consensus 127 ~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~---~~~~~~~I~~~~~~ 173 (180)
T PRK04182 127 REESEAKRYKEYYGIDIDDLSIYDLVINTSRWD---PEGVFDIILTAIDK 173 (180)
T ss_pred HHHHHHHHHHHHhCCCccccccccEEEECCCCC---HHHHHHHHHHHHHH
Confidence 111 1121111 23346899999987643 46777777777764
No 64
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.41 E-value=4.6e-12 Score=118.75 Aligned_cols=161 Identities=20% Similarity=0.265 Sum_probs=90.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHH-HHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ-HKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~-~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
++|+|+|++||||||+|+.|++.||++++ ++|++++.+.... ........+...++ .+ ...+.+.+..+
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~-~~~~~~~i~~~----- 70 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLI---SAGDIFRELAAKMGLDLIEFLNYAEENP-EI-DKKIDRRIHEI----- 70 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcee---cHHHHHHHHHHHcCCCHHHHHHHHhcCc-HH-HHHHHHHHHHH-----
Confidence 48999999999999999999999998866 8888776432210 00000000000001 00 00011111110
Q ss_pred eccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHH
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYV 202 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~ 202 (542)
....+.+|+||.+... .+...+|++|||+||.+++++|+.+|+. .+.+....++.
T Consensus 71 -------------------~~~~~~~Vi~g~~~~~--~~~~~~d~~v~v~a~~~~r~~R~~~R~~----~s~~~a~~~~~ 125 (171)
T TIGR02173 71 -------------------ALKEKNVVLESRLAGW--IVREYADVKIWLKAPLEVRARRIAKREG----KSLTVARSETI 125 (171)
T ss_pred -------------------HhcCCCEEEEecccce--eecCCcCEEEEEECCHHHHHHHHHHccC----CCHHHHHHHHH
Confidence 0012347789976532 1235678999999999999999998863 34444444333
Q ss_pred hhccch---hh---ccccCCCCcccEEEECCCCCHHHHHHHHHHHHH
Q psy9618 203 NMVKPA---FS---TFIAPSMVHADIIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 203 ~~v~p~---y~---~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~ 243 (542)
+..... |. ...+......|++|+++.-.. +. ++.|.+
T Consensus 126 ~~d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~~~~---~~-~~~i~~ 168 (171)
T TIGR02173 126 EREESEKRRYLKFYGIDIDDLSIYDLVINTSNWDP---NN-VDIILD 168 (171)
T ss_pred HHHHHHHHHHHHHhCCCccccccccEEEECCCCCH---HH-HHHHHH
Confidence 322111 22 222223467799999886433 34 555543
No 65
>PRK08118 topology modulation protein; Reviewed
Probab=99.40 E-value=2.3e-12 Score=121.76 Aligned_cols=105 Identities=26% Similarity=0.346 Sum_probs=73.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCee
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKV 123 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v 123 (542)
..|.|+|++||||||+|+.|++.++++++ ++|..++... |.. ..-+...+.++.+.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~---~lD~l~~~~~-------------w~~---~~~~~~~~~~~~~~~---- 58 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVH---HLDALFWKPN-------------WEG---VPKEEQITVQNELVK---- 58 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCce---ecchhhcccC-------------CcC---CCHHHHHHHHHHHhc----
Confidence 46999999999999999999999998876 8898875211 110 011122222332211
Q ss_pred ccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcC
Q psy9618 124 DVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGR 192 (542)
Q Consensus 124 ~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr 192 (542)
.+-+|+||.+.-..+...+.+|.+|||++|.++|+.|.++|....+|.
T Consensus 59 ---------------------~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~ 106 (167)
T PRK08118 59 ---------------------EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGK 106 (167)
T ss_pred ---------------------CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCC
Confidence 123899998764334445678999999999999999999997765554
No 66
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.40 E-value=6.1e-12 Score=124.55 Aligned_cols=185 Identities=21% Similarity=0.291 Sum_probs=110.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHc---
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKE--- 119 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~--- 119 (542)
+.+|+|.|++||||||+|+.|+++||++++ ++|.+|+.++.... ....+++ +.+.+.+.+..+..
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~---~~~~~~r~~~~~~~----~~g~~~~-----~~~~~~~~~~~~~~~~~ 71 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYL---DTGAMYRAVALAAL----RHGVDLE-----DEEALVALAAHLDISFE 71 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcc---cCchhHHHHHHHHH----HcCCCCC-----CHHHHHHHHhcCCeEEe
Confidence 589999999999999999999999998876 99999986433111 1111111 11111111111100
Q ss_pred ------------------------CC----eeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEE
Q psy9618 120 ------------------------GK----KVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFV 171 (542)
Q Consensus 120 ------------------------g~----~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfL 171 (542)
+. -...|..+......+. .+....-+|++|..... .+.+..+++|||
T Consensus 72 ~~~~~~~~~~~~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~---~ia~~~~~Vi~GR~~~~--~vl~~a~~~ifl 146 (225)
T PRK00023 72 SDPGGQRVFLNGEDVTDEIRTEEVGNAASKVAAIPEVREALVERQR---AFAREPGLVMDGRDIGT--VVFPDAELKIFL 146 (225)
T ss_pred cCCCcceEEECCcchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHH---HHhhCCCEEEEecChhe--EEeCCCCEEEEE
Confidence 00 0112222222221111 11222358999975321 133447899999
Q ss_pred ECCHHHHHHHhhhcchhh-hcCCHHHHHHHHHhhccchhhccccCCCCccc-EEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 172 DTDADVRLARRLKRDILA-RGRDLEGVIKQYVNMVKPAFSTFIAPSMVHAD-IIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 172 dad~d~rl~Rrl~Rd~~~-rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~AD-iVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
+||.++|.+|+.++.... ++.+.++..+...++.+....+++.|....+| ++|+++..+ ++++++.|.+.++.
T Consensus 147 ~a~~e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l~---~ee~v~~I~~~i~~ 221 (225)
T PRK00023 147 TASAEERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLS---IEEVVEKILALVEE 221 (225)
T ss_pred ECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCCC---HHHHHHHHHHHHHH
Confidence 999999988877663221 23466777777777777666777788777666 888877643 35677777766654
No 67
>PRK01184 hypothetical protein; Provisional
Probab=99.39 E-value=4.7e-12 Score=120.82 Aligned_cols=172 Identities=17% Similarity=0.208 Sum_probs=90.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
|++|+|+|++||||||+|+ +++++|++++ ++|+..+....+ . .+.... +.+.+....+.+ .
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i---~~~d~lr~~~~~-------~--~~~~~~----~~~g~~~~~~~~--~ 61 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVV---VMGDVIREEVKK-------R--GLEPTD----ENIGKVAIDLRK--E 61 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEE---EhhHHHHHHHHH-------c--CCCCCc----HHHHHHHHHHHH--H
Confidence 4699999999999999997 7899998765 887776532110 0 010000 011111111110 0
Q ss_pred eccceechhhchhcccccccCCCcEEEEEcccc-ccChhhhccCC---EEEEEECCHHHHHHHhhhcchhhhcCCHHHHH
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILA-FHNPQVLELLD---MKVFVDTDADVRLARRLKRDILARGRDLEGVI 198 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~-~~~~~l~~l~D---l~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl 198 (542)
+....+....+..... .+..++|+||+.. .+...+++.++ .+|||+||.+++++|+..|+....+.+.+...
T Consensus 62 ~~~~~~~~~~~~~i~~----~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~ 137 (184)
T PRK01184 62 LGMDAVAKRTVPKIRE----KGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELE 137 (184)
T ss_pred HChHHHHHHHHHHHHh----cCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHH
Confidence 0000111111222111 3457799999732 22223444555 89999999999999999886422122333333
Q ss_pred HHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHH
Q psy9618 199 KQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQL 245 (542)
Q Consensus 199 ~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L 245 (542)
+...... ..-..+..+.||++|.|++ +.. .+.+++.+.+
T Consensus 138 ~r~~~q~----~~~~~~~~~~ad~vI~N~~-~~~---~l~~~v~~~~ 176 (184)
T PRK01184 138 ERDEREL----SWGIGEVIALADYMIVNDS-TLE---EFRARVRKLL 176 (184)
T ss_pred HHHHHHh----ccCHHHHHHhcCEEEeCCC-CHH---HHHHHHHHHH
Confidence 3222211 0012334567999999887 344 4444444433
No 68
>PRK06762 hypothetical protein; Provisional
Probab=99.35 E-value=3.6e-11 Score=112.72 Aligned_cols=154 Identities=20% Similarity=0.210 Sum_probs=94.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
|.+|+|+|++||||||+|+.|+++++. .+.+++.|.+.+.+. ..++.++....+.+.+..+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~-~~~~i~~D~~r~~l~-----------~~~~~~~~~~~~~~~~~~~~~----- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR-GTLLVSQDVVRRDML-----------RVKDGPGNLSIDLIEQLVRYG----- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEecHHHHHHHhc-----------cccCCCCCcCHHHHHHHHHHH-----
Confidence 579999999999999999999999964 355678888765321 112233444444444333321
Q ss_pred eccceechhhchhcccccccCCCcEEEEEccccccC-----hhhhccCC---EEEEEECCHHHHHHHhhhcchhhhcCCH
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN-----PQVLELLD---MKVFVDTDADVRLARRLKRDILARGRDL 194 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~-----~~l~~l~D---l~IfLdad~d~rl~Rrl~Rd~~~rgr~~ 194 (542)
+.....+|+|+++.-.. ..+...++ ..|||++|.+++++|..+|+. ..+...
T Consensus 65 -------------------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~-~~~~~~ 124 (166)
T PRK06762 65 -------------------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK-SHEFGE 124 (166)
T ss_pred -------------------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc-cccCCH
Confidence 11235678888753211 12223332 789999999999999999864 223444
Q ss_pred HHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 195 EGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 195 ~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
+.+.++|..+... ..++.++++++.+ +++++.+|.+.+.
T Consensus 125 ~~l~~~~~~~~~~----------~~~~~~~~~~~~~---~~~v~~~i~~~~~ 163 (166)
T PRK06762 125 DDMRRWWNPHDTL----------GVIGETIFTDNLS---LKDIFDAILTDIG 163 (166)
T ss_pred HHHHHHHhhcCCc----------CCCCeEEecCCCC---HHHHHHHHHHHhc
Confidence 4454555443211 1256677666533 3577777776654
No 69
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.33 E-value=1.1e-11 Score=141.95 Aligned_cols=186 Identities=15% Similarity=0.158 Sum_probs=114.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCC--
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGK-- 121 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~-- 121 (542)
.+|+|+|++||||||+|+.|+++||+.++ +++.+|+.++...... ...++ ....|.+.+.+.+..+..+.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~---~~g~~~r~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYL---DTGAMYRACAWWCLKQ----GIDLD-AELVDEQVVTEAVGEFFTGLHF 73 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEe---ecCcEeHHHHHHHHhc----CCCcc-hhhhhhhhhHHHHHHHHhCCcE
Confidence 58999999999999999999999998877 8999998644211100 00010 00111122222222111110
Q ss_pred ---------------------------------eeccceechhhchhcccccccC-------CCcEEEEEccccccChhh
Q psy9618 122 ---------------------------------KVDVPIYNFVTHSRETRTKPMY-------GANVIIFEGILAFHNPQV 161 (542)
Q Consensus 122 ---------------------------------~v~~P~yd~~~~~~~~~~~~~~-------~~~vVIvEGi~~~~~~~l 161 (542)
-..+|.+.......+....... +..-+|+||--.-. .+
T Consensus 74 ~~~~~~~~~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRdigt--vv 151 (712)
T PRK09518 74 DISVDPDSPGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRDITT--VV 151 (712)
T ss_pred EEecCCCCcEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCccce--EE
Confidence 0123334444443333211111 12249999963322 12
Q ss_pred hccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCccc-EEEECCCCCHHHHHHHHHH
Q psy9618 162 LELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHAD-IIVPRGGENCVAIDLIVQH 240 (542)
Q Consensus 162 ~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~AD-iVI~~~~~n~~ai~~iv~~ 240 (542)
.+-.|++|||+|+.++|.+||..+... .+.++++++..++...+. +.+.|.....| ++|+++.. .++++++.
T Consensus 152 ~p~a~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts~~---~~~~v~~~ 224 (712)
T PRK09518 152 APDAEVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNSDL---DFDETLDL 224 (712)
T ss_pred ecCCCeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECCCC---CHHHHHHH
Confidence 334599999999999999999988643 678999999999999999 99999766655 55555543 34566666
Q ss_pred HHHHHH
Q psy9618 241 IHSQLQ 246 (542)
Q Consensus 241 I~~~L~ 246 (542)
|...++
T Consensus 225 i~~~i~ 230 (712)
T PRK09518 225 LIGLVE 230 (712)
T ss_pred HHHHHH
Confidence 666654
No 70
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.32 E-value=8.6e-14 Score=137.28 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=97.0
Q ss_pred hhhh-cccccccccccccccccccccc-ccCceEEEEeccccccChH-----HHhhhcccccccccccCCCCchhhhccC
Q psy9618 302 YIRR-MWSVDVPIYNFVTHSRETRTKP-MYGANVIIFEGILAFHNPQ-----VLERGFKLRPTLAQSYAGQPLPEALALL 374 (542)
Q Consensus 302 ~~~~-g~~v~~P~y~f~~~~r~~~~~~-~~~~~vii~EGi~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (542)
.|++ ++++.+|+|||.+|.|.+.... +++.+||||||+|+|+++. +++++
T Consensus 73 ~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~----------------------- 129 (220)
T cd02025 73 DIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFF----------------------- 129 (220)
T ss_pred HHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhC-----------------------
Confidence 3455 5799999999999999766554 7899999999999999987 77764
Q ss_pred CCCCCceeecccCCcc---hhhhhhhcccccCcchhccccCC--CCCCceeecCCChhhhhHHhHhhccCCChhHHHHHH
Q psy9618 375 PETPQIKGLHTAGNRT---RVSRVLLRGFKLRPTLAQSYAGQ--PLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYS 449 (542)
Q Consensus 375 ~~~~~~~~~~~~~~~~---rl~rr~~Rd~~~r~~~~~~~~~~--~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~ 449 (542)
|++|||+++.++ |+.+|..||.++||+...++..+ .+++ +...-....++.+...++..+||.++
T Consensus 130 ----D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~i~p~ 199 (220)
T cd02025 130 ----DFSIYVDADEDDIEKWYIKRFLKLRETAFSDPDSYFHRYAKMSE------EEAIAFAREVWKNINLKNLRENILPT 199 (220)
T ss_pred ----CeEEEEECCHHHHHHHHHHHHHHHHHHHHhCchhhhhcccCCCH------HHHHHHHHHHHHHcCHHHHhhhccCC
Confidence 999999999999 59999999999999887753111 0100 11122223446677888898999999
Q ss_pred HHHHHHHHHHH
Q psy9618 450 KRLIRLVIEFA 460 (542)
Q Consensus 450 ~rla~llie~a 460 (542)
+..|+++++..
T Consensus 200 ~~~AD~ii~~~ 210 (220)
T cd02025 200 RNRADLILEKG 210 (220)
T ss_pred ccceEEEEEeC
Confidence 99999988754
No 71
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.32 E-value=2.3e-11 Score=117.27 Aligned_cols=82 Identities=13% Similarity=0.224 Sum_probs=61.4
Q ss_pred cCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCC----CCHHHHHHHHH
Q psy9618 164 LLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGG----ENCVAIDLIVQ 239 (542)
Q Consensus 164 l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~----~n~~ai~~iv~ 239 (542)
.-|+.|||+|+.++.+.|+.+|++..+......- .+|.+.+...|..|++.+-...++.|+.+. .+..+++.++.
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~-~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~ 204 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKRGRPFEIDNFDEN-KDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLD 204 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCcccccccch-HHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHH
Confidence 4499999999999999999888654332211222 568888888999999888777788876543 47778888888
Q ss_pred HHHHHHH
Q psy9618 240 HIHSQLQ 246 (542)
Q Consensus 240 ~I~~~L~ 246 (542)
+|...+.
T Consensus 205 ~I~~~~~ 211 (216)
T COG1428 205 QILAKLK 211 (216)
T ss_pred HHHHHHh
Confidence 8877765
No 72
>PRK07261 topology modulation protein; Provisional
Probab=99.31 E-value=2.4e-12 Score=122.10 Aligned_cols=113 Identities=23% Similarity=0.317 Sum_probs=78.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCeec
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVD 124 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v~ 124 (542)
.|+|+|++||||||+|+.|++.+|.+.+ ++|.+++... |. ..+.+.+.+.+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i---~~D~~~~~~~-------------~~---~~~~~~~~~~~~~~~------ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVL---HLDTLHFQPN-------------WQ---ERDDDDMIADISNFL------ 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeE---ecCCEEeccc-------------cc---cCCHHHHHHHHHHHH------
Confidence 5899999999999999999999998866 7888765211 11 112222333333221
Q ss_pred cceechhhchhcccccccCCCcEEEEEccccc-cChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHH
Q psy9618 125 VPIYNFVTHSRETRTKPMYGANVIIFEGILAF-HNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQY 201 (542)
Q Consensus 125 ~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~-~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~ 201 (542)
.... +|+||.+.. ..+...+.+|.+|||++|..+|+.|.++|....+|+..+.+..++
T Consensus 57 ------------------~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r~~l~~g~ 115 (171)
T PRK07261 57 ------------------LKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTRESMAENC 115 (171)
T ss_pred ------------------hCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcCccccCCC
Confidence 1112 899998764 224455678999999999999999999999877776554443333
No 73
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.29 E-value=3e-12 Score=113.30 Aligned_cols=118 Identities=30% Similarity=0.364 Sum_probs=73.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCeec
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVD 124 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v~ 124 (542)
+|+|+|+|||||||+|+.|++++|++++ ++|++++....... . ..+......+.+.+.+.+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i---~~d~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~l~~~~~----- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVI---SMDDLIREPGWIER-----D-DDEREYIDADIDLLDDILEQLQN----- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEE---EEHHHHCCGTHCHG-----C-TTCCHHHHHHHHHHHHHHHHHHE-----
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEE---EecceEEecccccc-----C-cchhhHHHHHHHHHHHHHHhhhc-----
Confidence 6999999999999999999999997655 89995432111100 0 00000012223444444444321
Q ss_pred cceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 125 VPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 125 ~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
......+|+||.+...........+.+||++++.+.++.|+++|....+||+
T Consensus 67 -----------------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~ 118 (121)
T PF13207_consen 67 -----------------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRD 118 (121)
T ss_dssp -----------------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESS
T ss_pred -----------------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCC
Confidence 2344679999964422111223446899999999988889888887777775
No 74
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.28 E-value=4.3e-11 Score=137.86 Aligned_cols=195 Identities=16% Similarity=0.229 Sum_probs=120.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHH-----HHHHHh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLL-----PTLQRL 117 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~-----~~L~~l 117 (542)
.++|+|+|++||||||+|+.||++||+.++ +++.|||.++...+.........+- .+..|.+.+. ..+..+
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l~~~~~---~~g~~yRa~a~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 109 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLGAQCL---NTGSFYRAFTLAALRRVSELAVQAC-SPSPDPDAAVGCAAVPHATNL 109 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcEE---eHHHHHHHHHHHHHHcCCccccccc-CCcCCHHHHhhhhhHHHHhhC
Confidence 379999999999999999999999998766 9999999776543322100000000 0000111110 111111
Q ss_pred H--------------------------------------cCCee-----------------ccceechhhchhccccccc
Q psy9618 118 K--------------------------------------EGKKV-----------------DVPIYNFVTHSRETRTKPM 142 (542)
Q Consensus 118 k--------------------------------------~g~~v-----------------~~P~yd~~~~~~~~~~~~~ 142 (542)
. +++.+ .+|.+.......+.. +
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dv~~~ir~~~v~~~vS~ia~~p~VR~~l~~~qr~---~ 186 (863)
T PRK12269 110 DTSYAPLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRS---A 186 (863)
T ss_pred ceEecccccccccccccccccccccccccccccCceEEECCeEchhhhcchHHHHHHHHHhCCHHHHHHHHHHHHH---H
Confidence 0 00000 123332222222221 1
Q ss_pred CCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccE
Q psy9618 143 YGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADI 222 (542)
Q Consensus 143 ~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADi 222 (542)
....-+|+||--.-. .+.+-.|++|||+|+.++|.+||..... ...+.++++.+..+++..+..+-+.|.+...|.
T Consensus 187 ~~~~~~V~eGRDigT--vVfPdA~~KifL~As~e~RA~RR~~e~~--~~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dA 262 (863)
T PRK12269 187 VCGARVVCEGRDLTT--VVFVDADLKCYLDASIEARVARRWAQGT--SRLSKQELEQRMRARDAHDRARTVGGLRCAPDA 262 (863)
T ss_pred HhcCCEEEECCCCcc--EECCCCCEEEEEECCHHHHHHHHHHhhh--ccCCHHHHHHHHHHhhhhhccCccCCCccCCCe
Confidence 112238999952211 1223349999999999999999977543 235788999999999998988999999998887
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhHh
Q psy9618 223 IVPRGGENCVAIDLIVQHIHSQLQAVLL 250 (542)
Q Consensus 223 VI~~~~~n~~ai~~iv~~I~~~L~~k~~ 250 (542)
++-.+. ...++++++.|.+.+..+.+
T Consensus 263 i~iDts--~l~ieevv~~i~~~~~~~~~ 288 (863)
T PRK12269 263 LYVDTS--CLTIEEVCERIAREAHRRAL 288 (863)
T ss_pred EEEECC--CCCHHHHHHHHHHHHHhccc
Confidence 766553 23568899999888876544
No 75
>KOG1017|consensus
Probab=99.24 E-value=5.8e-12 Score=118.40 Aligned_cols=53 Identities=43% Similarity=0.671 Sum_probs=50.5
Q ss_pred CCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhcCCchH
Q psy9618 416 PEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKV 468 (542)
Q Consensus 416 ~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~Lp~~~ 468 (542)
..|++.|+-+.|+..+.|++||+.|++.||+|++||++|++|||.||+|||++
T Consensus 65 G~~lkll~~n~q~~el~ti~Rdkst~rsDF~F~ADRLiRLViEE~LNqLPyte 117 (267)
T KOG1017|consen 65 GSNLKLLECNSQVAELLTILRDKSTNRSDFVFNADRLIRLVIEECLNQLPYTE 117 (267)
T ss_pred hcccchhhhHHHHHHHHHHHhhccCcccceeecHHHHHHHHHHHHhhcCCccc
Confidence 45788999999999999999999999999999999999999999999999987
No 76
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.24 E-value=1.4e-10 Score=108.65 Aligned_cols=163 Identities=18% Similarity=0.174 Sum_probs=86.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCcc-ccHHhHHHHHHHhHc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA-FDFELLLPTLQRLKE 119 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a-~D~~lL~~~L~~lk~ 119 (542)
..+..|.++|++||||||+|+.|++.||++++ +.|.+........... + |+..+. ...+...+.+..+..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~---d~d~~~~~~~g~~~~~-----~-~~~~g~~~~~~~~~~~~~~l~~ 72 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFI---DTDHLIEARAGKSIPE-----I-FEEEGEAAFRELEEEVLAELLA 72 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE---EChHHHHHHcCCCHHH-----H-HHHHCHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999999998876 8888764221100000 0 000000 001111222232211
Q ss_pred CCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhc---cCCEEEEEECCHHHHHHHhhhcchhhhc--CCH
Q psy9618 120 GKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLE---LLDMKVFVDTDADVRLARRLKRDILARG--RDL 194 (542)
Q Consensus 120 g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~---l~Dl~IfLdad~d~rl~Rrl~Rd~~~rg--r~~ 194 (542)
..+.+|..|.........+. ...+.|||++|.+.+.+|..+|...... .+.
T Consensus 73 ------------------------~~~~vi~~g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~ 128 (175)
T PRK00131 73 ------------------------RHNLVISTGGGAVLREENRALLRERGTVVYLDASFEELLRRLRRDRNRPLLQTNDP 128 (175)
T ss_pred ------------------------cCCCEEEeCCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCcCCCCCh
Confidence 11234444432222233332 2368999999999999998776531111 122
Q ss_pred HHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 195 EGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 195 ~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
.....++.....+.| .+.+|++|+++..+. +++++.|.+.++
T Consensus 129 ~~~~~~~~~~~~~~~-------~~~~dl~idt~~~~~---~e~~~~I~~~v~ 170 (175)
T PRK00131 129 KEKLRDLYEERDPLY-------EEVADITVETDGRSP---EEVVNEILEKLE 170 (175)
T ss_pred HHHHHHHHHHHHHHH-------HhhcCeEEeCCCCCH---HHHHHHHHHHHH
Confidence 222322222222222 345899999776443 455555555554
No 77
>PRK13949 shikimate kinase; Provisional
Probab=99.23 E-value=3.6e-11 Score=113.85 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=86.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCc-cccHHhHHHHHHHhHcCCe
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPD-AFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~-a~D~~lL~~~L~~lk~g~~ 122 (542)
.-|+|.|++||||||+++.|++.++++++ ++|.+........... .|...+ ....+...+.++.+..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~i---d~D~~i~~~~~~~~~~------~~~~~g~~~fr~~e~~~l~~l~~--- 69 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFI---DLDFFIENRFHKTVGD------IFAERGEAVFRELERNMLHEVAE--- 69 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCee---cccHHHHHHHCccHHH------HHHHhCHHHHHHHHHHHHHHHHh---
Confidence 46999999999999999999999999877 8897754210000000 010000 1111222233333311
Q ss_pred eccceechhhchhcccccccCCCcEEEEEccccccC---hhhhccCCEEEEEECCHHHHHHHhhhcchhhh----cCCHH
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN---PQVLELLDMKVFVDTDADVRLARRLKRDILAR----GRDLE 195 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~---~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~r----gr~~~ 195 (542)
..+.||..|...... ..+....+++|||++|.+++++|+..+.. .| +.+.+
T Consensus 70 ---------------------~~~~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~~-~RP~~~~~~~~ 127 (169)
T PRK13949 70 ---------------------FEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAKQ-QRPLLKGKSDE 127 (169)
T ss_pred ---------------------CCCEEEEcCCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCCC-CCCCCCCCChH
Confidence 123566677554433 23445568999999999999988753211 11 11222
Q ss_pred HHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHH
Q psy9618 196 GVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQ 244 (542)
Q Consensus 196 ~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~ 244 (542)
..++. ....|.++.. ..+.||++|+.++.+. ++++++|.+.
T Consensus 128 ~~~~~----i~~l~~~R~~-~Y~~ad~~id~~~~~~---~e~~~~I~~~ 168 (169)
T PRK13949 128 ELLDF----IIEALEKRAP-FYRQAKIIFNADKLED---ESQIEQLVQR 168 (169)
T ss_pred HHHHH----HHHHHHHHHH-HHHhCCEEEECCCCCH---HHHHHHHHHh
Confidence 22211 1222222222 2233899998776433 4666666543
No 78
>COG4240 Predicted kinase [General function prediction only]
Probab=99.20 E-value=6.3e-11 Score=114.69 Aligned_cols=126 Identities=25% Similarity=0.437 Sum_probs=90.5
Q ss_pred CCCCCCccCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhhhchhcHHHHHHHhc-cc-c-CCCCC
Q psy9618 29 GRPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSFYRVLNEEQHKKAAQ-NE-Y-NFDHP 102 (542)
Q Consensus 29 ~~ppw~~~~~~~~~~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Ddfy~~l~~e~~~~~~~-~~-~-~fd~p 102 (542)
...||..+ .++|+||||+||.||||||++..|...| |...+..+|.||||....+ +...+.. +. . .-+-|
T Consensus 39 Kiap~~qe---~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthad-rl~La~q~npllq~RGlp 114 (300)
T COG4240 39 KIAPWAQE---RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHAD-RLRLARQVNPLLQTRGLP 114 (300)
T ss_pred hhhhhhhh---cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHH-HHHHHHhcCchhcccCCC
Confidence 44677653 3459999999999999999999988877 3335667899999975332 2222222 21 1 23679
Q ss_pred ccccHHhHHHHHHHhHcCC-eeccceechhhchhcc------cccccCCCcEEEEEccccccCh
Q psy9618 103 DAFDFELLLPTLQRLKEGK-KVDVPIYNFVTHSRET------RTKPMYGANVIIFEGILAFHNP 159 (542)
Q Consensus 103 ~a~D~~lL~~~L~~lk~g~-~v~~P~yd~~~~~~~~------~~~~~~~~~vVIvEGi~~~~~~ 159 (542)
+..|..++.++|..+.+|+ .|.+|.||.+.+.... +|.. ...+++|+||+++-.++
T Consensus 115 GTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik-~~vdivIlEGWfvGfrP 177 (300)
T COG4240 115 GTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIK-FEVDIVILEGWFVGFRP 177 (300)
T ss_pred CCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCccccee-cceeEEEEeeeeeeccc
Confidence 9999999999999988875 5789999997665432 2222 33899999999875544
No 79
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.19 E-value=1.2e-10 Score=109.58 Aligned_cols=159 Identities=20% Similarity=0.262 Sum_probs=98.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCc-cccHHhHHHHHHHhHcCCe
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPD-AFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~-a~D~~lL~~~L~~lk~g~~ 122 (542)
.-|.++|++||||||+++.||+.||++++ |+|...-.-.. ... ...|+..+ ..-.++-.+.|+.+..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~---D~D~~Ie~~~g-----~sI-~eIF~~~GE~~FR~~E~~vl~~l~~--- 70 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFI---DTDQEIEKRTG-----MSI-AEIFEEEGEEGFRRLETEVLKELLE--- 70 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcc---cchHHHHHHHC-----cCH-HHHHHHHhHHHHHHHHHHHHHHHhh---
Confidence 46889999999999999999999999988 88877531100 000 00111111 1112333344444421
Q ss_pred eccceechhhchhcccccccCCCcEEEEEccccccChhhhccC---CEEEEEECCHHHHHHHhhhcch--hhhcCCHHHH
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELL---DMKVFVDTDADVRLARRLKRDI--LARGRDLEGV 197 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~---Dl~IfLdad~d~rl~Rrl~Rd~--~~rgr~~~~v 197 (542)
..+.||.-|-.++..++.+..+ ..+|||++|.++.++|...... .-...+..+.
T Consensus 71 ---------------------~~~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~ 129 (172)
T COG0703 71 ---------------------EDNAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREE 129 (172)
T ss_pred ---------------------cCCeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHH
Confidence 1146788887777666666544 3899999999999999862210 0112334455
Q ss_pred HHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 198 IKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 198 l~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
+++..+...|.|.+ .||++++.+..+ +.++++|...|.
T Consensus 130 l~~L~~~R~~~Y~e-------~a~~~~~~~~~~----~~v~~~i~~~l~ 167 (172)
T COG0703 130 LEELLEERQPLYRE-------VADFIIDTDDRS----EEVVEEILEALE 167 (172)
T ss_pred HHHHHHHHHHHHHH-------hCcEEecCCCCc----HHHHHHHHHHHH
Confidence 55555556666654 499999988654 466666666554
No 80
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.19 E-value=3.3e-10 Score=107.58 Aligned_cols=163 Identities=18% Similarity=0.262 Sum_probs=92.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccH-HhHHHHHHHhHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDF-ELLLPTLQRLKEG 120 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~-~lL~~~L~~lk~g 120 (542)
++..|+|.|++||||||+++.|++.+|++++ ++|........... ...|...+.-.| +.-.+.++.+..
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~v---d~D~~i~~~~g~~i------~~~~~~~g~~~fr~~e~~~l~~l~~- 72 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFY---DSDQEIEKRTGADI------GWVFDVEGEEGFRDREEKVINELTE- 72 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEE---ECCchHHHHhCcCH------hHHHHHhCHHHHHHHHHHHHHHHHh-
Confidence 3457999999999999999999999998876 77764321100000 000100000000 111222222210
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEccccccCh---hhhccCCEEEEEECCHHHHHHHhhhcchhh--hcCCHH
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNP---QVLELLDMKVFVDTDADVRLARRLKRDILA--RGRDLE 195 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~---~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~--rgr~~~ 195 (542)
...+++.-|......+ .+....+.+|||++|.+++++|...+.... .+.+..
T Consensus 73 -----------------------~~~~vi~~ggg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~ 129 (172)
T PRK05057 73 -----------------------KQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPR 129 (172)
T ss_pred -----------------------CCCEEEEcCCchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHH
Confidence 1234555554333333 234456799999999999999986543211 122333
Q ss_pred HHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 196 GVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 196 ~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
..++.+.+...|.|. +.||++|++++.+. +++++.|.+++++
T Consensus 130 ~~~~~l~~~R~~~Y~-------~~Ad~~idt~~~s~---~ei~~~i~~~l~~ 171 (172)
T PRK05057 130 EVLEALANERNPLYE-------EIADVTIRTDDQSA---KVVANQIIHMLES 171 (172)
T ss_pred HHHHHHHHHHHHHHH-------hhCCEEEECCCCCH---HHHHHHHHHHHhh
Confidence 445555555556654 34999999776544 4777777776653
No 81
>PRK00625 shikimate kinase; Provisional
Probab=99.19 E-value=2.9e-10 Score=108.14 Aligned_cols=156 Identities=16% Similarity=0.113 Sum_probs=84.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchh-------cHHHHHHHhccccCCCCCccccHHhHHHHHHHh
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVL-------NEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRL 117 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l-------~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~l 117 (542)
.|.++|.+||||||+++.|++++|++++ ++|.+.+.- +..+.. ...++..| ...-.+.++.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~i---d~D~~I~~~~g~~~~~~i~eif-~~~Ge~~f-------r~~E~~~l~~l 70 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFF---DTDDLIVSNYHGALYSSPKEIY-QAYGEEGF-------CREEFLALTSL 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEE---EhhHHHHHHhCCCCCCCHHHHH-HHHCHHHH-------HHHHHHHHHHh
Confidence 5899999999999999999999999877 888775310 000000 00000000 01111112221
Q ss_pred HcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhcc---CCEEEEEECCHHHHHHHhhhcchhhhcCCH
Q psy9618 118 KEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLEL---LDMKVFVDTDADVRLARRLKRDILARGRDL 194 (542)
Q Consensus 118 k~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l---~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~ 194 (542)
...+.||..|......++..+. ...+|||++|.++..+|+..|+........
T Consensus 71 -------------------------~~~~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~ 125 (173)
T PRK00625 71 -------------------------PVIPSIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHA 125 (173)
T ss_pred -------------------------ccCCeEEECCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcH
Confidence 1123355555433334433333 368999999999999999888654322223
Q ss_pred HHHHHHHHhhccchhhccccCCCCcccEEEECCC---CCHHHHHHHHHHHHHH
Q psy9618 195 EGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGG---ENCVAIDLIVQHIHSQ 244 (542)
Q Consensus 195 ~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~---~n~~ai~~iv~~I~~~ 244 (542)
+.+.+.| +...|.|+ +.||++|+.+. .+...+..+.+.+...
T Consensus 126 ~~~~~ll-~~R~~~Y~-------~~ad~~i~~~~~~~~~~~~~~~~~~~~~~~ 170 (173)
T PRK00625 126 PSLEEIL-SQRIDRMR-------SIADYIFSLDHVAETSSESLMRACQSFCTL 170 (173)
T ss_pred HHHHHHH-HHHHHHHH-------HHCCEEEeCCCcccCCCCCHHHHHHHHHHH
Confidence 3333333 33334443 35888876551 2222334555555443
No 82
>PRK03839 putative kinase; Provisional
Probab=99.19 E-value=4.1e-10 Score=107.16 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=86.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCeec
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVD 124 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v~ 124 (542)
+|.|+|++||||||+|+.|++++|++++ ++|++++... -...|+......+..+.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~i---d~d~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~------- 62 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYV---DLTEFALKKG---------IGEEKDDEMEIDFDKLAYFIEEE------- 62 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE---ehhhhhhhcC---------CcccCChhhhcCHHHHHHHHHHh-------
Confidence 6899999999999999999999998876 8898875210 01112222223333333333221
Q ss_pred cceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhh
Q psy9618 125 VPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNM 204 (542)
Q Consensus 125 ~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~ 204 (542)
..+ ..+|++|.+... ...|++|||+++.+++.+|+..|... +....+....++.+.
T Consensus 63 -----------------~~~-~~vIidG~~~~l-----~~~~~vi~L~~~~~~~~~Rl~~R~~~-~~~~~~~~~~~~~~~ 118 (180)
T PRK03839 63 -----------------FKE-KNVVLDGHLSHL-----LPVDYVIVLRAHPKIIKERLKERGYS-KKKILENVEAELVDV 118 (180)
T ss_pred -----------------ccC-CCEEEEeccccc-----cCCCEEEEEECCHHHHHHHHHHcCCC-HHHHHHHHHHHHHHH
Confidence 011 227888864321 23589999999999999998877521 111111222222211
Q ss_pred ccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 205 VKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 205 v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
+..+.+. .....++|+.++. .++++++.|.+.+..
T Consensus 119 --~~~~~~~---~r~~~~~Id~~~~---s~eev~~~I~~~l~~ 153 (180)
T PRK03839 119 --CLCEALE---EKEKVIEVDTTGK---TPEEVVEEILELIKS 153 (180)
T ss_pred --HHHHHHH---hcCCEEEEECCCC---CHHHHHHHHHHHHhc
Confidence 0000010 1223466665432 336777888777764
No 83
>KOG2702|consensus
Probab=99.17 E-value=7.7e-11 Score=114.17 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=113.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC----------CeEEeecchhhhchhcHHHHHHHhcc---ccCCCCCccccH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV----------PWVTLLSMDSFYRVLNEEQHKKAAQN---EYNFDHPDAFDF 107 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~----------p~v~iIs~Ddfy~~l~~e~~~~~~~~---~~~fd~p~a~D~ 107 (542)
.....+|++|++|+||||++.+++++-.. +...++-||.|+.. ..++...... ...-+.|..||-
T Consensus 117 n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHls--r~~LD~f~dP~~AharRGapwTFD~ 194 (323)
T KOG2702|consen 117 NNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLS--RRCLDLFKDPQTAHARRGAPWTFDS 194 (323)
T ss_pred cchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhh--HHHHHhhcChHHHHhhcCCCcccCH
Confidence 34579999999999999999999885422 22245899999753 3333322211 122356889999
Q ss_pred HhHHHHHHHhHc--CCeeccceechhhchhcccccccC-CCcEEEEEccccccC-hh---hhccCCEEEEEECCHHHHHH
Q psy9618 108 ELLLPTLQRLKE--GKKVDVPIYNFVTHSRETRTKPMY-GANVIIFEGILAFHN-PQ---VLELLDMKVFVDTDADVRLA 180 (542)
Q Consensus 108 ~lL~~~L~~lk~--g~~v~~P~yd~~~~~~~~~~~~~~-~~~vVIvEGi~~~~~-~~---l~~l~Dl~IfLdad~d~rl~ 180 (542)
+++.++++.+++ ...+..|.+++...........++ ...++|+||.|++.+ +. +.+++|.+.|++++.++..+
T Consensus 195 ~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~ 274 (323)
T KOG2702|consen 195 NLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEE 274 (323)
T ss_pred HHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHH
Confidence 999999999984 457899999999988876655544 468999999877654 33 44567889999999999999
Q ss_pred Hhhhcchhhhc--CCHHHHHH
Q psy9618 181 RRLKRDILARG--RDLEGVIK 199 (542)
Q Consensus 181 Rrl~Rd~~~rg--r~~~~vl~ 199 (542)
|..+|..+ .| ...++..+
T Consensus 275 RVa~RHl~-sGl~~t~~ea~e 294 (323)
T KOG2702|consen 275 RVAKRHLQ-SGLVTTIAEARE 294 (323)
T ss_pred HHHHHhhc-ccccCCHHHHHh
Confidence 99999764 46 44444443
No 84
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.16 E-value=6.9e-10 Score=105.22 Aligned_cols=162 Identities=25% Similarity=0.340 Sum_probs=87.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLK 118 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk 118 (542)
..+.+|+++|++||||||+|+.|++.|+.+ .+..++.|.+.+.+ ....|+.....+.......+....
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~----------~~~~~~~~~~~~~~~~~~~l~~~l 74 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREIL----------GHYGYDKQSRIEMALKRAKLAKFL 74 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhc----------CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999632 24456777765421 112232222222211111121110
Q ss_pred cCCeeccceechhhchhcccccccCCCcEEEEEcccccc--ChhhhccC--CEEEEEECCHHHHHHHhhhcchhhhcCCH
Q psy9618 119 EGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFH--NPQVLELL--DMKVFVDTDADVRLARRLKRDILARGRDL 194 (542)
Q Consensus 119 ~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~--~~~l~~l~--Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~ 194 (542)
. ....+||++|...+. ....+... .+.|||++|.+++++|..++ .. ++. .
T Consensus 75 ----------------------~-~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~-l~-~~~-~ 128 (176)
T PRK05541 75 ----------------------A-DQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKG-LY-TKA-L 128 (176)
T ss_pred ----------------------H-hCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhh-HH-HHH-H
Confidence 0 112467778765431 11111111 36899999999999986432 11 110 1
Q ss_pred HHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 195 EGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 195 ~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
.+.+.+......|.| ...||++|++++. ..++.++++|...++.
T Consensus 129 ~~~~~~~~~~~~~~~-------~~~Ad~vI~~~~~--~~~~~~v~~i~~~l~~ 172 (176)
T PRK05541 129 KGEIKNVVGVDIPFD-------EPKADLVIDNSCR--TSLDEKVDLILNKLKL 172 (176)
T ss_pred cCcccccccCCCccc-------CCCCCEEEeCCCC--CCHHHHHHHHHHHHHH
Confidence 111111111122222 2348999998752 2446888888887764
No 85
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.15 E-value=3.6e-10 Score=107.54 Aligned_cols=37 Identities=35% Similarity=0.455 Sum_probs=32.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
..+|+|.|++||||||+|+.|++.+|+.++ ++|++.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~---~~g~~~~ 39 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHL---STGDLLR 39 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEE---eHHHHHH
Confidence 569999999999999999999999998766 8888765
No 86
>PRK13948 shikimate kinase; Provisional
Probab=99.15 E-value=7.2e-10 Score=106.26 Aligned_cols=162 Identities=17% Similarity=0.179 Sum_probs=91.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCC-CccccHHhHHHHHHHhHc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH-PDAFDFELLLPTLQRLKE 119 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~-p~a~D~~lL~~~L~~lk~ 119 (542)
..+..|+++|++||||||+++.|+++||.+++ ++|.+.......... + .|.. .+....+...+.++.+..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~i---D~D~~ie~~~g~si~-----~-if~~~Ge~~fR~~E~~~l~~l~~ 78 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFI---DTDRYIERVTGKSIP-----E-IFRHLGEAYFRRCEAEVVRRLTR 78 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE---ECCHHHHHHHhCCHH-----H-HHHHhCHHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999999877 899776432111010 0 0110 112222333334444321
Q ss_pred CCeeccceechhhchhcccccccCCCcEEEEEccccccChhhh---ccCCEEEEEECCHHHHHHHhhhcch--hhhcCCH
Q psy9618 120 GKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVL---ELLDMKVFVDTDADVRLARRLKRDI--LARGRDL 194 (542)
Q Consensus 120 g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~---~l~Dl~IfLdad~d~rl~Rrl~Rd~--~~rgr~~ 194 (542)
..+.||.-|...+.+++.+ .-...+|||+++.++..+|+..++. ...+...
T Consensus 79 ------------------------~~~~VIa~GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~ 134 (182)
T PRK13948 79 ------------------------LDYAVISLGGGTFMHEENRRKLLSRGPVVVLWASPETIYERTRPGDRPLLQVEDPL 134 (182)
T ss_pred ------------------------cCCeEEECCCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcCCCCCCCCCCChH
Confidence 1234666554444343322 2236899999999999999743211 1111112
Q ss_pred HHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 195 EGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 195 ~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
+.+.+.|.+ ..|.| +.||++|++++.+. +++++.|.+.+.+
T Consensus 135 ~~l~~l~~~-R~~~Y--------~~a~~~i~t~~~~~---~ei~~~i~~~l~~ 175 (182)
T PRK13948 135 GRIRTLLNE-REPVY--------RQATIHVSTDGRRS---EEVVEEIVEKLWA 175 (182)
T ss_pred HHHHHHHHH-HHHHH--------HhCCEEEECCCCCH---HHHHHHHHHHHHH
Confidence 233333333 23333 23899999876444 4667777776654
No 87
>PLN02200 adenylate kinase family protein
Probab=99.14 E-value=4.3e-10 Score=112.02 Aligned_cols=176 Identities=18% Similarity=0.282 Sum_probs=93.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHc
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKE 119 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~ 119 (542)
++.|++|+|+|++||||||+|+.|++++|++++ ++++..+.- .. . + ..+...+. ..+..
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~hi---s~gdllR~~----i~----~----~---s~~~~~i~---~~~~~ 98 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHL---SAGDLLRRE----IA----S----N---SEHGAMIL---NTIKE 98 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEE---EccHHHHHH----Hh----c----c---ChhHHHHH---HHHHc
Confidence 456899999999999999999999999998765 888887521 00 0 0 00011111 12223
Q ss_pred CCeeccceechhhchhcccccccCCCcEEEEEccccccCh-----hhh-ccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 120 GKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNP-----QVL-ELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 120 g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~-----~l~-~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
|+.+.-............. ....-+|+||....... ... ...|++||++++.+++++|+..|+...-..+
T Consensus 99 G~~vp~e~~~~~l~~~l~~----~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~ 174 (234)
T PLN02200 99 GKIVPSEVTVKLIQKEMES----SDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDN 174 (234)
T ss_pred CCCCcHHHHHHHHHHHHhc----CCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCC
Confidence 3322111111111111111 11234899996432111 111 2468999999999999999998853111111
Q ss_pred H---HHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 194 L---EGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 194 ~---~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
. ...++.|.+...|..+.|-.+ .--++|+.++ .++.+.+.|.+.+.+
T Consensus 175 ~e~~~~Rl~~y~~~~~pv~~~y~~~---~~~~~IDa~~----~~eeV~~~v~~~l~~ 224 (234)
T PLN02200 175 IDTIKKRLKVFNALNLPVIDYYSKK---GKLYTINAVG----TVDEIFEQVRPIFAA 224 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---CCEEEEECCC----CHHHHHHHHHHHHHH
Confidence 1 233345555444433322111 1124454333 346777777766653
No 88
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.13 E-value=7.3e-10 Score=105.36 Aligned_cols=35 Identities=34% Similarity=0.545 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
+|.|.|++||||||+|+.|++++|+.++ ++++..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~i---s~~d~lr 35 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHL---SAGDLLR 35 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEE---ECChHHH
Confidence 5899999999999999999999997655 8887765
No 89
>PRK13946 shikimate kinase; Provisional
Probab=99.13 E-value=4.5e-10 Score=107.65 Aligned_cols=162 Identities=19% Similarity=0.252 Sum_probs=88.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
+..|+++|++||||||+++.|+++||++++ ++|............ ..... |+. .+-.+.-.+.++.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~i---d~D~~~~~~~g~~~~-e~~~~--~ge--~~~~~~e~~~l~~l~---- 77 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFL---DADTEIERAARMTIA-EIFAA--YGE--PEFRDLERRVIARLL---- 77 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeE---CcCHHHHHHhCCCHH-HHHHH--HCH--HHHHHHHHHHHHHHH----
Confidence 468999999999999999999999999977 888653321100000 00000 000 000111122222221
Q ss_pred eccceechhhchhcccccccCCCcEEEEEccccccChhhhc---cCCEEEEEECCHHHHHHHhhhcchhh--hcCCHHHH
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLE---LLDMKVFVDTDADVRLARRLKRDILA--RGRDLEGV 197 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~---l~Dl~IfLdad~d~rl~Rrl~Rd~~~--rgr~~~~v 197 (542)
.....||..|.-.+..+..+. -..++|||++|.+++++|+..|.... .+.+....
T Consensus 78 --------------------~~~~~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~ 137 (184)
T PRK13946 78 --------------------KGGPLVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKET 137 (184)
T ss_pred --------------------hcCCeEEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHH
Confidence 122446666644333333222 24689999999999999998775321 11233333
Q ss_pred HHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 198 IKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 198 l~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
+++..+...|.| ..+|++++++..+. +.+++.|...+..
T Consensus 138 i~~~~~~R~~~y--------~~~dl~i~~~~~~~---~~~~~~i~~~i~~ 176 (184)
T PRK13946 138 LARLMEERYPVY--------AEADLTVASRDVPK---EVMADEVIEALAA 176 (184)
T ss_pred HHHHHHHHHHHH--------HhCCEEEECCCCCH---HHHHHHHHHHHHH
Confidence 333222222332 34799997665333 4666666665553
No 90
>PRK07429 phosphoribulokinase; Provisional
Probab=99.10 E-value=1.6e-11 Score=127.83 Aligned_cols=161 Identities=16% Similarity=0.265 Sum_probs=121.4
Q ss_pred hhhhhccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCc
Q psy9618 301 GYIRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQI 380 (542)
Q Consensus 301 ~~~~~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (542)
..|++|+.|..|+||+.++... ....+.|.++|||||+|+|++..++++. |+
T Consensus 76 ~~L~~g~~I~~P~yd~~~g~~~-~~~~i~p~~iVIvEG~~~l~~~~lr~~~---------------------------D~ 127 (327)
T PRK07429 76 KALKTGQPILKPIYNHETGTFD-PPEYIEPNKIVVVEGLHPLYDERVRELY---------------------------DF 127 (327)
T ss_pred HHHHCCCceecceeecCCCCcC-CcEecCCCcEEEEechhhcCcHhHHhhC---------------------------CE
Confidence 3567899999999999999754 3467889999999999999998888864 99
Q ss_pred eeecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHH
Q psy9618 381 KGLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFA 460 (542)
Q Consensus 381 ~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~a 460 (542)
++|++++.++|+.||+.||+..||.+.+. ....+..+.+....|+.+....|+++|...
T Consensus 128 ~I~Vda~~evr~~Rri~Rd~~rrG~s~ee---------------------i~~~i~~r~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 128 KVYLDPPEEVKIAWKIKRDMAKRGHTYEQ---------------------VLAEIEAREPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred EEEEECCHHHHHHHHHHHHHhhcCCCHHH---------------------HHHHHHHhCccHhhhhcccccCCCEEEEcC
Confidence 99999999999999999999999976554 233455578888889999899999888765
Q ss_pred hhcCCc-hH--------------------------HHHHHHHhCCCCEEEEe------------ecCCCCCC--------
Q psy9618 461 LSLLPF-KV--------------------------SIHSIAYAFPNVKIVTS------------AVDPEINE-------- 493 (542)
Q Consensus 461 l~~Lp~-~~--------------------------G~~~~~~~~p~v~i~t~------------~iD~~l~~-------- 493 (542)
-+.+.- .+ | ++...+|+.++.-+ .||..++.
T Consensus 187 p~~~~~~~~~~~~l~v~li~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~dg~~~~~~~~~l~~ 264 (327)
T PRK07429 187 PTQLIDNDEENKVLRVRLVLRPGIPHPDPAYLFDEG--KLTCSYPGIALRYGPDRYMGKPVDVLEVDGHATLEQFDNLEE 264 (327)
T ss_pred CCcCCCCCCCCcEEEEEEEecCCCCCCCcceeeccc--cccCCCCCceEEEecCccCCcEeeEEEEcCCCcHHHHHHHHH
Confidence 333211 10 5 55566676665443 25664432
Q ss_pred CCceecCCCcccccccCCC
Q psy9618 494 NFYVIPGIGNFGDRYFGTE 512 (542)
Q Consensus 494 ~~~i~PGlGd~gdr~~gt~ 512 (542)
.-|+-+.|++++..|+|..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~ 283 (327)
T PRK07429 265 MIYIEPHLSNTSTKYYGEL 283 (327)
T ss_pred HHHhhhcccccCccccccH
Confidence 2456688888888888843
No 91
>PRK08356 hypothetical protein; Provisional
Probab=99.09 E-value=1.1e-09 Score=105.79 Aligned_cols=178 Identities=17% Similarity=0.272 Sum_probs=87.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCcccc----HHhHHHHHHHhH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFD----FELLLPTLQRLK 118 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D----~~lL~~~L~~lk 118 (542)
.++|+|+|++||||||+|+.|+ ++|++. |++++.++.....+ ..+|.|.....+. .+.+.+.-+-+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~---is~~~~~~~~~~~~-----~~~~~f~~~~~~~~~~~~~~~~e~g~~~~ 75 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCR---VSCSDPLIDLLTHN-----VSDYSWVPEVPFKGEPTRENLIELGRYLK 75 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcE---EeCCCccccccccc-----ccccccccHHHHhhccccccHHHHHHHHH
Confidence 4689999999999999999995 578763 47776554211111 1222231111100 011111101110
Q ss_pred c--CCeeccceechhhchhcccccccCCCcEEEEEccccccCh-hhhccCCEEEEEECCHHHHHHHhhhcchhhhc--CC
Q psy9618 119 E--GKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNP-QVLELLDMKVFVDTDADVRLARRLKRDILARG--RD 193 (542)
Q Consensus 119 ~--g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~-~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rg--r~ 193 (542)
+ |..+ +.....+.. .....++++|+-..... .+......+|||++|.+++++|+..|+...+. .+
T Consensus 76 ~~yG~~~----~~~~~~~~~------~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~ 145 (195)
T PRK08356 76 EKYGEDI----LIRLAVDKK------RNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKS 145 (195)
T ss_pred HhcCcHH----HHHHHHHHh------ccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCcccccccc
Confidence 0 0000 000000000 11234899998433221 22344468999999999999999888643211 12
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
.+...+ +.......|. .....+.||++|.|++ .++.+.++|.+.+.
T Consensus 146 ~e~~~~-~~~~~~~l~~--~~~~~~~aD~vI~N~~----~~e~~~~~i~~~~~ 191 (195)
T PRK08356 146 FEDFLK-FDEWEEKLYH--TTKLKDKADFVIVNEG----TLEELRKKVEEILR 191 (195)
T ss_pred HHHHHH-HHHHHHHhhh--hhhHHHhCcEEEECCC----CHHHHHHHHHHHHH
Confidence 222211 1111111111 1223467999998754 33456666666554
No 92
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.09 E-value=1e-11 Score=127.11 Aligned_cols=140 Identities=14% Similarity=0.105 Sum_probs=95.8
Q ss_pred hhhhccc-cccccccccccccccc-cccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCC
Q psy9618 302 YIRRMWS-VDVPIYNFVTHSRETR-TKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQ 379 (542)
Q Consensus 302 ~~~~g~~-v~~P~y~f~~~~r~~~-~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (542)
.|++|++ |.+|+|||.+|.|.+. ...+.+.+||||||+++|+++.++.- +.++.. +.+.+|
T Consensus 136 ~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~-------------~~~~~~----~~d~~D 198 (290)
T TIGR00554 136 DLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPH-------------DPHHVF----VSDFVD 198 (290)
T ss_pred HHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhccc-------------ccchHH----HHHhCC
Confidence 4677886 9999999999999755 45569999999999999998875410 000100 123469
Q ss_pred ceeecccCCcchhhhhhhcccccC--c-chhccccCCCCCCceeecCCCh-hhhhHHhHhhccCCChhHHHHHHHHHHHH
Q psy9618 380 IKGLHTAGNRTRVSRVLLRGFKLR--P-TLAQSYAGQPLPEALALLPETP-QIKGLHTFIRNKDTSRDEFIFYSKRLIRL 455 (542)
Q Consensus 380 ~~~~~~~~~~~rl~rr~~Rd~~~r--~-~~~~~~~~~~~~~nv~vl~~~p-ql~~l~tilRd~~t~~~~Fv~~~~rla~l 455 (542)
++|||+++.+++..|++.|....| + +..+++.. .-..|+..- .-..+..+.+...++..+||.|++..|++
T Consensus 199 ~~IyvDa~~d~~~~w~i~R~~~l~~~~~~~~~s~~~-----~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdl 273 (290)
T TIGR00554 199 FSIYVDAEEDLLQTWYINRFLKFREGAFTDPDSYFH-----NYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASL 273 (290)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhh-----hhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccE
Confidence 999999999999988888865444 3 22222100 001122211 12234556777789999999999999999
Q ss_pred HHHHHhhc
Q psy9618 456 VIEFALSL 463 (542)
Q Consensus 456 lie~al~~ 463 (542)
++..+-+|
T Consensus 274 Il~~~~~h 281 (290)
T TIGR00554 274 ILTKGANH 281 (290)
T ss_pred EEecCCCC
Confidence 98876555
No 93
>PRK04040 adenylate kinase; Provisional
Probab=99.09 E-value=1.7e-09 Score=104.34 Aligned_cols=172 Identities=20% Similarity=0.210 Sum_probs=86.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc--CCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL--NVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L--g~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
|.+|+|+|.+||||||+++.|++.| ++++ ++.|++++....+ ..+ +.+. +.+. .+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~---~~~g~~~~~~a~~-------~g~-~~~~-----d~~r----~l~~~ 61 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKI---VNFGDVMLEVAKE-------EGL-VEHR-----DEMR----KLPPE 61 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeE---EecchHHHHHHHH-------cCC-CCCH-----HHHh----hCChh
Confidence 5799999999999999999999999 5554 4888887532211 000 0000 0000 00000
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEccccccCh----------hhhc-cCCEEEEEECCHHHHHHHhhhcchhh
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNP----------QVLE-LLDMKVFVDTDADVRLARRLKRDILA 189 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~----------~l~~-l~Dl~IfLdad~d~rl~Rrl~Rd~~~ 189 (542)
. ...+........ ....+...+|+||-+.+..+ .+.+ ..|.+|++.+++++.++||++-....
T Consensus 62 ~---~~~~~~~a~~~i---~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~ 135 (188)
T PRK04040 62 E---QKELQREAAERI---AEMAGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRR 135 (188)
T ss_pred h---hHHHHHHHHHHH---HHhhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccC
Confidence 0 000000000000 00123344777885432211 1122 34789999999999999998521111
Q ss_pred hcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHH
Q psy9618 190 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQ 244 (542)
Q Consensus 190 rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~ 244 (542)
|+......++.+.+ ....|..++.......+.+|.|.... ++..+++|...
T Consensus 136 R~~es~e~I~~~~~-~a~~~a~~~a~~~g~~~~iI~N~d~~---~e~a~~~i~~i 186 (188)
T PRK04040 136 RDVETEEDIEEHQE-MNRAAAMAYAVLTGATVKIVENREGL---LEEAAEEIVEV 186 (188)
T ss_pred CCCCCHHHHHHHHH-HHHHHHHHHHHhcCCeEEEEECCCCC---HHHHHHHHHHH
Confidence 22233333333333 22333333444455578888876421 34555555443
No 94
>PRK14527 adenylate kinase; Provisional
Probab=99.08 E-value=9.5e-10 Score=105.85 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
++.+|.|.|++||||||+|+.|++++|++++ ++|+..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i---s~gd~~r 42 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKL---STGDILR 42 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCC---CccHHHH
Confidence 5689999999999999999999999998766 8888775
No 95
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.07 E-value=3.5e-11 Score=122.50 Aligned_cols=109 Identities=16% Similarity=0.228 Sum_probs=93.3
Q ss_pred hhhhccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCce
Q psy9618 302 YIRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQIK 381 (542)
Q Consensus 302 ~~~~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (542)
.|++|+++..|+||+.++.. .....+.|.++|||||+|+|+++.++++. |++
T Consensus 68 ~Lk~g~~i~~P~y~~~~~~~-~~~~~i~~~~ivIvEG~~~l~~~~l~~~~---------------------------D~~ 119 (273)
T cd02026 68 ALKEGQAIEKPIYNHVTGLI-DPPELIKPTKIVVIEGLHPLYDERVRELL---------------------------DFS 119 (273)
T ss_pred HHHCCCCcccccccccCCCc-CCcEEcCCCCEEEEeeehhhCchhhhhhc---------------------------cEE
Confidence 57889999999999999964 33456889999999999999998888864 999
Q ss_pred eecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHH
Q psy9618 382 GLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEF 459 (542)
Q Consensus 382 ~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~ 459 (542)
+||+++.++|+.||+.||+..||.+.+. ....+..+.+....|+.|....|+++|..
T Consensus 120 I~vd~~~e~r~~r~i~Rd~~rrG~s~e~---------------------v~~~i~~r~~~~~~~I~P~~~~ADvVI~~ 176 (273)
T cd02026 120 VYLDISDEVKFAWKIQRDMAERGHSLED---------------------VLASIEARKPDFEAYIDPQKQYADVVIQV 176 (273)
T ss_pred EEEECChhHHHHHHHHHHHHHhCCCHHH---------------------HHHHHHhhchhHHHHhccccccCcEEEEc
Confidence 9999999999999999999999987665 23344457889999999999999998864
No 96
>PRK14532 adenylate kinase; Provisional
Probab=99.07 E-value=1.1e-09 Score=104.89 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=31.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
.|.+.|++||||||+|+.|++++|++++ ++|+..+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i---s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL---STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE---eCcHHHHH
Confidence 4789999999999999999999998766 88888763
No 97
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.06 E-value=2.2e-09 Score=101.06 Aligned_cols=155 Identities=14% Similarity=0.158 Sum_probs=84.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHH----HHHHHhHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLL----PTLQRLKE 119 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~----~~L~~lk~ 119 (542)
..|.|+|++||||||+++.|+++||++++ +.|.+........... . + ....++.+. +.++.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~---d~D~~~~~~~g~~~~~-~-----~---~~~g~~~~~~~e~~~~~~~-- 68 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFV---DTDQWLQSTSNMTVAE-I-----V---EREGWAGFRARESAALEAV-- 68 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE---EccHHHHHHhCCCHHH-H-----H---HHHCHHHHHHHHHHHHHHh--
Confidence 35888999999999999999999999876 8887764221000000 0 0 011111111 112111
Q ss_pred CCeeccceechhhchhcccccccCCCcEEEEEccccccCh---hhhccCCEEEEEECCHHHHHHHhhhcchhh-----hc
Q psy9618 120 GKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNP---QVLELLDMKVFVDTDADVRLARRLKRDILA-----RG 191 (542)
Q Consensus 120 g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~---~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~-----rg 191 (542)
.....||..|.-..... .+....+++|||++|.+++++|+..|.... .+
T Consensus 69 -----------------------~~~~~vi~~ggg~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~ 125 (171)
T PRK03731 69 -----------------------TAPSTVIATGGGIILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTG 125 (171)
T ss_pred -----------------------cCCCeEEECCCCccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCC
Confidence 11233454443222122 233345789999999999999998764211 12
Q ss_pred CCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 192 RDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 192 r~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
.+..+....+.+...+.|. +.++++|+.+. .++.+.+.|.+.+.
T Consensus 126 ~~~~~~~~~~~~~r~~~y~-------~~a~~~Id~~~----~~e~v~~~i~~~l~ 169 (171)
T PRK03731 126 KPISEEVAEVLAEREALYR-------EVAHHIIDATQ----PPSQVVSEILSALA 169 (171)
T ss_pred CChHHHHHHHHHHHHHHHH-------HhCCEEEcCCC----CHHHHHHHHHHHHh
Confidence 3332222222232333443 23678887553 34677777766654
No 98
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.04 E-value=3.5e-09 Score=99.13 Aligned_cols=145 Identities=21% Similarity=0.245 Sum_probs=92.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCC-----CccccHHhHHHHHHHhH
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH-----PDAFDFELLLPTLQRLK 118 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~-----p~a~D~~lL~~~L~~lk 118 (542)
++|+|+|.+|.||||+|+.|+ .||++++ ++.+|.+ .+...++. .-.+|.+.+...+..+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i---~l~el~~-----------e~~~~~~~de~r~s~~vD~d~~~~~le~~~ 65 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVI---ELNELAK-----------ENGLYTEYDELRKSVIVDVDKLRKRLEELL 65 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCcee---eHHHHHH-----------hcCCeeccCCccceEEeeHHHHHHHHHHHh
Confidence 479999999999999999999 9998866 5555543 22222322 22456677777666542
Q ss_pred cCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHH
Q psy9618 119 EGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVI 198 (542)
Q Consensus 119 ~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl 198 (542)
. ....|+|+-+.- +.+.+|++|.|.|+++...+|+..|+ .+.+.+.
T Consensus 66 ~-------------------------~~~~Ivd~H~~h----l~~~~dlVvVLR~~p~~L~~RLk~RG-----y~~eKI~ 111 (180)
T COG1936 66 R-------------------------EGSGIVDSHLSH----LLPDCDLVVVLRADPEVLYERLKGRG-----YSEEKIL 111 (180)
T ss_pred c-------------------------cCCeEeechhhh----cCCCCCEEEEEcCCHHHHHHHHHHcC-----CCHHHHH
Confidence 1 123688886543 34478999999999999999988875 4444444
Q ss_pred HHHHh----hc-cchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 199 KQYVN----MV-KPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 199 ~q~~~----~v-~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
+.... .. .++.+.+ .+-+.|+..+.+.. ++++.|.+.+.
T Consensus 112 ENveAEi~~vi~~EA~E~~------~~v~evdtt~~s~e---e~~~~i~~ii~ 155 (180)
T COG1936 112 ENVEAEILDVILIEAVERF------EAVIEVDTTNRSPE---EVAEEIIDIIG 155 (180)
T ss_pred HHHHHHHHHHHHHHHHHhc------CceEEEECCCCCHH---HHHHHHHHHHc
Confidence 32222 11 1222222 35677777665544 66666666665
No 99
>PRK13947 shikimate kinase; Provisional
Probab=99.04 E-value=6.2e-09 Score=97.89 Aligned_cols=157 Identities=19% Similarity=0.205 Sum_probs=84.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCC-ccccHHhHHHHHHHhHcCCee
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHP-DAFDFELLLPTLQRLKEGKKV 123 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p-~a~D~~lL~~~L~~lk~g~~v 123 (542)
-|.|.|++||||||+|+.|++.||++++ +.|.+.......... + .|+.. .....+.-.+.++.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~i---d~d~~~~~~~g~~~~-----~-~~~~~ge~~~~~~e~~~~~~l~~---- 69 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFI---DTDKEIEKMTGMTVA-----E-IFEKDGEVRFRSEEKLLVKKLAR---- 69 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEE---ECchhhhhhcCCcHH-----H-HHHHhChHHHHHHHHHHHHHHhh----
Confidence 5899999999999999999999999977 788765422100000 0 01000 01111111222333211
Q ss_pred ccceechhhchhcccccccCCCcEEEEEcc-ccccCh--hhhccCCEEEEEECCHHHHHHHhhhcchh---hhcCCHHHH
Q psy9618 124 DVPIYNFVTHSRETRTKPMYGANVIIFEGI-LAFHNP--QVLELLDMKVFVDTDADVRLARRLKRDIL---ARGRDLEGV 197 (542)
Q Consensus 124 ~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi-~~~~~~--~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~---~rgr~~~~v 197 (542)
....||..|. ..+... ......+++|||++|.+.+.+|...|... ..+...+.+
T Consensus 70 --------------------~~~~vi~~g~g~vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i 129 (171)
T PRK13947 70 --------------------LKNLVIATGGGVVLNPENVVQLRKNGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERI 129 (171)
T ss_pred --------------------cCCeEEECCCCCcCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHH
Confidence 1123333332 122111 11223468999999999999998766422 111122333
Q ss_pred HHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHH-HHH
Q psy9618 198 IKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHS-QLQ 246 (542)
Q Consensus 198 l~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~-~L~ 246 (542)
.+.+.++ .+.| +.||++|+++..+ .+.+++.|.+ .+.
T Consensus 130 ~~~~~~r-~~~y--------~~ad~~Idt~~~~---~~~i~~~I~~~~~~ 167 (171)
T PRK13947 130 KELLKER-EPFY--------DFADYTIDTGDMT---IDEVAEEIIKAYLK 167 (171)
T ss_pred HHHHHHH-HHHH--------HhcCEEEECCCCC---HHHHHHHHHHHHHh
Confidence 3343332 2222 2379999976543 3577777777 444
No 100
>PRK14531 adenylate kinase; Provisional
Probab=99.04 E-value=1.8e-09 Score=103.33 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=32.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
+.|.|+|++||||||+|+.|++.+|++++ ++++..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i---s~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL---STGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE---ecccHHH
Confidence 46999999999999999999999998876 8888876
No 101
>PRK14530 adenylate kinase; Provisional
Probab=99.04 E-value=1.3e-09 Score=106.89 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=31.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
.|+|.|++||||||+|+.|++.+|++++ ++|++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i---~~g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHV---TTGDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE---eccHHHH
Confidence 6899999999999999999999998776 8888876
No 102
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.01 E-value=1.1e-10 Score=113.96 Aligned_cols=112 Identities=23% Similarity=0.344 Sum_probs=95.8
Q ss_pred hhhhccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCce
Q psy9618 302 YIRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQIK 381 (542)
Q Consensus 302 ~~~~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (542)
.|++|+.+.+|.|||.+|.+..+...+.+..++|+||+++|.++.++.+. |++
T Consensus 77 ~l~~~~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~---------------------------d~~ 129 (209)
T PRK05480 77 ALKAGKAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLM---------------------------DIK 129 (209)
T ss_pred HHHcCCccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhh---------------------------cee
Confidence 45678999999999999999777777889999999999999988777754 899
Q ss_pred eecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHH
Q psy9618 382 GLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFA 460 (542)
Q Consensus 382 ~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~a 460 (542)
|||+++.++|+.|++.||+..||++.+.. +..+.....+....|+++....|+++|...
T Consensus 130 I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~--------------------~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~ 188 (209)
T PRK05480 130 IFVDTPLDIRLIRRLKRDVNERGRSLESV--------------------INQYLSTVRPMHLQFIEPSKRYADIIIPEG 188 (209)
T ss_pred EEEeCChhHHHHHHHhhcchhcCCCHHHH--------------------HHHHHHhhhhhHHhhccHhhcceeEEecCC
Confidence 99999999999999999999999876542 455666667888899999899999998743
No 103
>PRK02496 adk adenylate kinase; Provisional
Probab=99.01 E-value=3.2e-09 Score=101.38 Aligned_cols=172 Identities=18% Similarity=0.203 Sum_probs=87.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
|+.|+|.|++||||||+|+.|++.+|++++ ++|+..+.........................+...+.+...
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i---~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~----- 72 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHI---STGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQER----- 72 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEE---EhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHH-----
Confidence 356899999999999999999999998766 788776532111000000000000000111112222222211
Q ss_pred eccceechhhchhcccccccCCCcEEEEEccccccC-----hhhh----ccCCEEEEEECCHHHHHHHhhhcchhhhc-C
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN-----PQVL----ELLDMKVFVDTDADVRLARRLKRDILARG-R 192 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~-----~~l~----~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rg-r 192 (542)
... .....-+|+||+-.... ..+. ...|++||+++|.+++.+|+..|...... .
T Consensus 73 -------------l~~---~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~ 136 (184)
T PRK02496 73 -------------LQQ---PDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEE 136 (184)
T ss_pred -------------HhC---cCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHH
Confidence 100 01123489999732110 1111 23589999999999999999988532110 1
Q ss_pred CHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHH
Q psy9618 193 DLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQL 245 (542)
Q Consensus 193 ~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L 245 (542)
.....++.|.+...|..+.|-+. ..-+.|+.++ .++.+.++|.+.|
T Consensus 137 ~~~~r~~~y~~~~~~v~~~~~~~---~~~~~Ida~~----~~~~V~~~i~~~l 182 (184)
T PRK02496 137 VIRRRLEVYREQTAPLIDYYRDR---QKLLTIDGNQ----SVEAVTTELKAAL 182 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---CCEEEEECCC----CHHHHHHHHHHHh
Confidence 12234445555444443333111 1124455443 3467777776554
No 104
>PRK13808 adenylate kinase; Provisional
Probab=99.00 E-value=3.1e-09 Score=110.45 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
.|.|.|++||||||+|+.|++.+|++++ ++|+.++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~i---s~gdlLR 36 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQL---STGDMLR 36 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee---cccHHHH
Confidence 4788999999999999999999998766 8888876
No 105
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.99 E-value=3.9e-09 Score=103.18 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=31.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 46 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
|.|.|++||||||+|+.|++++|++++ ++++..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~i---s~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHI---STGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCee---ehhHHHHH
Confidence 789999999999999999999998766 88888763
No 106
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.99 E-value=2.4e-09 Score=105.10 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
.|.|.|++||||||+|+.|++++|++++ ++++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~i---s~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHI---STGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE---ECCccHH
Confidence 5899999999999999999999998766 8877765
No 107
>PRK14528 adenylate kinase; Provisional
Probab=98.98 E-value=2.6e-09 Score=102.72 Aligned_cols=168 Identities=20% Similarity=0.235 Sum_probs=86.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCee
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKV 123 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v 123 (542)
..|.|.|++||||||+|+.|++.+|++++ ++|+..+..-....... .+.-..+..|+-+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~i---s~~~~lr~~~~~~~~~g------------------~~~~~~~~~g~lv 60 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQI---STGDILREAVKNQTAMG------------------IEAKRYMDAGDLV 60 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee---eCCHHHHHHhhcCCHHH------------------HHHHHHHhCCCcc
Confidence 46899999999999999999999998866 88888753111100000 0000011111111
Q ss_pred ccceechhhchhcccccccCCCcEEEEEccccccC-----hhhh----ccCCEEEEEECCHHHHHHHhhhcchhhhcC--
Q psy9618 124 DVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN-----PQVL----ELLDMKVFVDTDADVRLARRLKRDILARGR-- 192 (542)
Q Consensus 124 ~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~-----~~l~----~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr-- 192 (542)
.-..+......+..+ ....+.+|+||.-.... ..+. ...|.+|+|++|.+++++|+..|... .|+
T Consensus 61 p~~~~~~~~~~~l~~---~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~-~gr~d 136 (186)
T PRK14528 61 PDSVVIGIIKDRIRE---ADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI-EGRAD 136 (186)
T ss_pred CHHHHHHHHHHHHhC---cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc-cCCCC
Confidence 100000111111111 11124589999522110 0111 24689999999999999999998542 232
Q ss_pred CHHH----HHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHH
Q psy9618 193 DLEG----VIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 193 ~~~~----vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~ 243 (542)
+.++ .++.|.+...|..+.|-.. .--..|+.++ .++.+...|.+
T Consensus 137 d~~e~i~~Rl~~y~~~~~pv~~~y~~~---~~~~~i~~~~----~~~~v~~~~~~ 184 (186)
T PRK14528 137 DNEATIKNRLDNYNKKTLPLLDFYAAQ---KKLSQVNGVG----SLEEVTSLIQK 184 (186)
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHhC---CCEEEEECCC----CHHHHHHHHHH
Confidence 2222 3335555555555444322 1123333222 23566666654
No 108
>KOG3354|consensus
Probab=98.97 E-value=1.2e-08 Score=93.65 Aligned_cols=172 Identities=19% Similarity=0.243 Sum_probs=96.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccH-HhHHHHH-HHhHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDF-ELLLPTL-QRLKEG 120 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~-~lL~~~L-~~lk~g 120 (542)
+++|.|.|.+||||||++++|+++|+++++ +.|+|+- ++.+.+...+ .-.++.+.|.| ..+...+ +.+..+
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~---dgDd~Hp---~~NveKM~~G-ipLnD~DR~pWL~~i~~~~~~~l~~~ 84 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFI---DGDDLHP---PANVEKMTQG-IPLNDDDRWPWLKKIAVELRKALASG 84 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCccc---ccccCCC---HHHHHHHhcC-CCCCcccccHHHHHHHHHHHHHhhcC
Confidence 579999999999999999999999999987 9999983 4444444433 33455566666 2222222 233333
Q ss_pred Ceeccceechhh--chhcccccccCCCcEEEEEccccccChhhhccCC-EEEEEECCHHHHHHHhhhcchhhhcCCHHHH
Q psy9618 121 KKVDVPIYNFVT--HSRETRTKPMYGANVIIFEGILAFHNPQVLELLD-MKVFVDTDADVRLARRLKRDILARGRDLEGV 197 (542)
Q Consensus 121 ~~v~~P~yd~~~--~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~D-l~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~v 197 (542)
+.+.+..-.-.. .+....... +|- +.-..-+. ..||+.++.++.++|..+|..+... .+-+
T Consensus 85 q~vVlACSaLKk~YRdILr~sl~---------~gk-----~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp--~~ll 148 (191)
T KOG3354|consen 85 QGVVLACSALKKKYRDILRHSLK---------DGK-----PGKCPESQLHFILLSASFEVILKRLKKRKGHFMP--ADLL 148 (191)
T ss_pred CeEEEEhHHHHHHHHHHHHhhcc---------cCC-----ccCCccceEEEeeeeccHHHHHHHHhhcccccCC--HHHH
Confidence 333221110000 000000000 000 00011112 3589999999999999999875533 3344
Q ss_pred HHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 198 IKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 198 l~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
-+|+.... .|.....|+|-..-. + ..+++++..|.+.+..
T Consensus 149 eSQf~~LE--------~p~~~e~div~isv~-~-~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 149 ESQFATLE--------APDADEEDIVTISVK-T-YSVEEIVDTIVKMVAL 188 (191)
T ss_pred HHHHHhcc--------CCCCCccceEEEeec-c-CCHHHHHHHHHHHHHh
Confidence 45665533 333334465543222 1 3457888888776653
No 109
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.97 E-value=2.1e-09 Score=98.86 Aligned_cols=34 Identities=32% Similarity=0.560 Sum_probs=31.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 46 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
|.|+|++||||||+|+.|++.||++++ +.|.+.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~---~~d~~~~ 35 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFV---DLDELIE 35 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEE---EchHHHH
Confidence 789999999999999999999998877 8888865
No 110
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=1.6e-08 Score=92.35 Aligned_cols=155 Identities=21% Similarity=0.170 Sum_probs=97.3
Q ss_pred EcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCeecccee
Q psy9618 49 CGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVDVPIY 128 (542)
Q Consensus 49 ~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v~~P~y 128 (542)
.|.+||||||++++|+++||++|+ +.|+|+ .++.+.+...+.---|+....+.+.+.+.+.++..+..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fi---dGDdlH---p~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~------ 68 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFI---DGDDLH---PPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNK------ 68 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCcee---cccccC---CHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCC------
Confidence 389999999999999999998887 999998 45666666665432333334444666666665432221
Q ss_pred chhhchhcccccccCCCcEEEEEccc-cccChhhhccC-CE-EEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhc
Q psy9618 129 NFVTHSRETRTKPMYGANVIIFEGIL-AFHNPQVLELL-DM-KVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMV 205 (542)
Q Consensus 129 d~~~~~~~~~~~~~~~~~vVIvEGi~-~~~~~~l~~l~-Dl-~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v 205 (542)
.+||....+ -.+.+.++..+ ++ .|||+.+.++.++|..+|..+... ..-+.+||....
T Consensus 69 -----------------~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~--~~ll~SQfa~LE 129 (161)
T COG3265 69 -----------------HVVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMP--ASLLDSQFATLE 129 (161)
T ss_pred -----------------ceEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCC--HHHHHHHHHHhc
Confidence 123333221 11223444444 33 599999999999999999876533 344556776533
Q ss_pred cchhhccccCCCCcccEE-EECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 206 KPAFSTFIAPSMVHADII-VPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 206 ~p~y~~~i~p~~~~ADiV-I~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
.|.-.. |++ |+.+. .++.+++++...|.+
T Consensus 130 --------~P~~de-~vi~idi~~----~~e~vv~~~~~~l~~ 159 (161)
T COG3265 130 --------EPGADE-DVLTIDIDQ----PPEEVVAQALAWLKE 159 (161)
T ss_pred --------CCCCCC-CEEEeeCCC----CHHHHHHHHHHHHhc
Confidence 333333 444 44332 447888888887764
No 111
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.97 E-value=9.3e-11 Score=114.37 Aligned_cols=111 Identities=21% Similarity=0.361 Sum_probs=90.3
Q ss_pred hhhhhccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCc
Q psy9618 301 GYIRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQI 380 (542)
Q Consensus 301 ~~~~~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (542)
..|++|+.+.+|+|||.++++..+...+++..++|+||+++|+.+.++.+ .|+
T Consensus 76 ~~l~~g~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~~~~~~---------------------------~d~ 128 (207)
T TIGR00235 76 KNLKNGSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDERLRDL---------------------------MDL 128 (207)
T ss_pred HHHHCCCCEecccceeecCCCCCceEEeCCCCEEEEEehhhhchHhHHHh---------------------------CCE
Confidence 34678899999999999999977777889999999999999988877765 389
Q ss_pred eeecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHH
Q psy9618 381 KGLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIE 458 (542)
Q Consensus 381 ~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie 458 (542)
.+|++++.++++.|++.||+..||+..+.. +.++.....+....|+.+....|++++.
T Consensus 129 ~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~--------------------~~~~~~~~~~~~~~~i~~~~~~Ad~vi~ 186 (207)
T TIGR00235 129 KIFVDTPLDIRLIRRIERDINERGRSLDSV--------------------IDQYRKTVRPMYEQFVEPTKQYADLIIP 186 (207)
T ss_pred EEEEECChhHHHHHHHHHHHHhhCCCHHHH--------------------HHHHHHhhhhhHHHhCcccccccEEEEc
Confidence 999999999999999999999999766431 3344445556666777777777777765
No 112
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.96 E-value=1.6e-08 Score=95.02 Aligned_cols=163 Identities=23% Similarity=0.308 Sum_probs=89.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHh
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRL 117 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~l 117 (542)
+.++++|+++|.|||||||+|.+|.++|-. ..+.+++.|..-+.| ...+.|+..+....-.-...+..+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL---------~~dLgFs~edR~eniRRvaevAkl 90 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGL---------NRDLGFSREDRIENIRRVAEVAKL 90 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcc---------cCCCCCChHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999943 245678888886643 234556544433221111111111
Q ss_pred HcCCeeccceechhhchhcccccccCCCcEEEEEccc-cc--cChhhhccCC----EEEEEECCHHHHHHHhhhcchhhh
Q psy9618 118 KEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGIL-AF--HNPQVLELLD----MKVFVDTDADVRLARRLKRDILAR 190 (542)
Q Consensus 118 k~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~-~~--~~~~l~~l~D----l~IfLdad~d~rl~Rrl~Rd~~~r 190 (542)
+..+.+|++-... .+ ..+..++++. +-|||+||.++|.+|--+--..
T Consensus 91 ------------------------l~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYk-- 144 (197)
T COG0529 91 ------------------------LADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYK-- 144 (197)
T ss_pred ------------------------HHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHH--
Confidence 1122334433322 11 1122333332 4599999999999873321110
Q ss_pred cCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 191 GRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 191 gr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
++..+.++.|.-.. ..|+ . -.++|++++.+..+ +++.+++|...|.+
T Consensus 145 -KAr~GeI~~fTGid-~pYE---~--P~~Pel~l~t~~~~---vee~v~~i~~~l~~ 191 (197)
T COG0529 145 -KARAGEIKNFTGID-SPYE---A--PENPELHLDTDRNS---VEECVEQILDLLKE 191 (197)
T ss_pred -HHHcCCCCCCcCCC-CCCC---C--CCCCeeEeccccCC---HHHHHHHHHHHHHh
Confidence 01112222222211 1121 1 24679999876643 36778888888875
No 113
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.95 E-value=9.1e-10 Score=97.65 Aligned_cols=114 Identities=26% Similarity=0.302 Sum_probs=61.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCeecc
Q psy9618 46 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVDV 125 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v~~ 125 (542)
|+|+|.+||||||+|+.|+++++.. ..|.++........ .....+..-..++.+.....+..+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 68 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDI-----IRDIAPEEDIVDSI----DDNPDWKENKRLDMEFQDELLDSIIQAIR--- 68 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHH-----HHHHHHHTTSHSSH----CCHHCCCCCCCSCHHHHHHHHHHHHHHHH---
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcH-----HHHHHHhcCCcccc----cccchhhhhhhhhhhhHHHHHHHHHHhhc---
Confidence 7899999999999999999998311 22222221000000 00011122233444443333333321100
Q ss_pred ceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEE-EEEECCHHHHHHHhhhcchh
Q psy9618 126 PIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMK-VFVDTDADVRLARRLKRDIL 188 (542)
Q Consensus 126 P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~-IfLdad~d~rl~Rrl~Rd~~ 188 (542)
.......+|+||+...... ....... |||+||.+++.+|+..|...
T Consensus 69 ---------------~~~~~~~~iid~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~R~~~ 115 (129)
T PF13238_consen 69 ---------------RMNKGRNIIIDGILSNLEL--ERLFDIKFIFLDCSPEELRKRLKKRGRK 115 (129)
T ss_dssp ---------------HHTTTSCEEEEESSEEECE--TTEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred ---------------ccccCCcEEEecccchhcc--cccceeeEEEEECCHHHHHHHHHhCCCC
Confidence 1234456899998765432 1222233 99999999999999998754
No 114
>KOG3079|consensus
Probab=98.95 E-value=8.5e-09 Score=97.33 Aligned_cols=126 Identities=25% Similarity=0.265 Sum_probs=73.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHc
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKE 119 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~ 119 (542)
...+.||.|.|++||||.|.|.++++.+|+.+ ||+++..|. +..++ ..++ ..++. +.+++
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftH---lSaGdLLR~----E~~~~-gse~---------g~~I~---~~i~~ 64 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTH---LSAGDLLRA----EIASA-GSER---------GALIK---EIIKN 64 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCcee---ecHHHHHHH----HHccc-cChH---------HHHHH---HHHHc
Confidence 44689999999999999999999999999544 499988762 11111 1111 11122 22333
Q ss_pred CCeeccceechhhchhcccccccCCCcEEEEEccccccC------hhhhccCCEEEEEECCHHHHHHHhhhcchh
Q psy9618 120 GKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN------PQVLELLDMKVFVDTDADVRLARRLKRDIL 188 (542)
Q Consensus 120 g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~------~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~ 188 (542)
|.-|...+....+...... ....+-+++||.---.+ ..+....++++|++|+.|++++|++.|+..
T Consensus 65 G~iVP~ei~~~LL~~am~~---~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 65 GDLVPVEITLSLLEEAMRS---SGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred CCcCcHHHHHHHHHHHHHh---cCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc
Confidence 4332221111111111100 01112278888522111 112224689999999999999999999865
No 115
>KOG2878|consensus
Probab=98.95 E-value=3.2e-09 Score=101.15 Aligned_cols=127 Identities=30% Similarity=0.420 Sum_probs=91.8
Q ss_pred CCCCCccCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHc----CCC-eEEeecchhhhchhcHHHHHHHhccccC-----C
Q psy9618 30 RPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIESL----NVP-WVTLLSMDSFYRVLNEEQHKKAAQNEYN-----F 99 (542)
Q Consensus 30 ~ppw~~~~~~~~~~~IIgI~G~sGSGKTTvAk~La~~L----g~p-~v~iIs~Ddfy~~l~~e~~~~~~~~~~~-----f 99 (542)
.|-|+.+ |.. -|++||++||.||||||++-+|-.+| +-. .+..+|.|+||-. .+++...++.+..+ -
T Consensus 20 iP~~f~~-G~~-~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLT-he~Q~eL~k~npnN~Llq~R 96 (282)
T KOG2878|consen 20 IPVFFKD-GDD-VPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLT-HEGQAELRKKNPNNALLQYR 96 (282)
T ss_pred CcccccC-CCc-CcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeee-chhHHHHHhhCCCChhhccC
Confidence 6889853 322 28999999999999999998876655 222 4566899999963 24444444443322 3
Q ss_pred CCCccccHHhHHHHHHHhHcC----Ceeccceechhhchh------cccccccCCCcEEEEEccccccCh
Q psy9618 100 DHPDAFDFELLLPTLQRLKEG----KKVDVPIYNFVTHSR------ETRTKPMYGANVIIFEGILAFHNP 159 (542)
Q Consensus 100 d~p~a~D~~lL~~~L~~lk~g----~~v~~P~yd~~~~~~------~~~~~~~~~~~vVIvEGi~~~~~~ 159 (542)
+.+++.|..++.++|..+.++ ..+.+|.|+.+.-.- ..+|..+.+..++|+||+++-..+
T Consensus 97 GlaGtHD~kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~P 166 (282)
T KOG2878|consen 97 GLAGTHDLKLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKP 166 (282)
T ss_pred CCCCcccHHHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccc
Confidence 678999999999999887664 358899998876542 245666677899999999876444
No 116
>PRK05439 pantothenate kinase; Provisional
Probab=98.94 E-value=6.8e-11 Score=121.88 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=92.9
Q ss_pred hhhhccc-cccccccccccccc-cccccccCceEEEEeccccccChHH-HhhhcccccccccccCCCCchhhhccCCCCC
Q psy9618 302 YIRRMWS-VDVPIYNFVTHSRE-TRTKPMYGANVIIFEGILAFHNPQV-LERGFKLRPTLAQSYAGQPLPEALALLPETP 378 (542)
Q Consensus 302 ~~~~g~~-v~~P~y~f~~~~r~-~~~~~~~~~~vii~EGi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (542)
.|++|++ |.+|+|||.++.|. +++..+.+.+|||||||++|+++.. ... .+.+..
T Consensus 160 ~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~----------------------~l~d~~ 217 (311)
T PRK05439 160 DVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRL----------------------FVSDFF 217 (311)
T ss_pred HHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccch----------------------hhHHhC
Confidence 5677887 99999999999996 4667889999999999999987776 110 012235
Q ss_pred CceeecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCCh-hhhhHHhHhhccCCChhHHHHHHHHHHHHHH
Q psy9618 379 QIKGLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETP-QIKGLHTFIRNKDTSRDEFIFYSKRLIRLVI 457 (542)
Q Consensus 379 ~~~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~p-ql~~l~tilRd~~t~~~~Fv~~~~rla~lli 457 (542)
|++|||+++.+++..|++.|..+.|++..... ...-..-.-++..- .-.....+.+...++..+||.+++..|++++
T Consensus 218 D~~IfVda~~~~~~~w~i~R~~~lr~~~~rdp--~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi 295 (311)
T PRK05439 218 DFSIYVDADEDLIEKWYIERFLKLRETAFSDP--DSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLIL 295 (311)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHhhhcCc--chhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEE
Confidence 99999999999988888888877665432110 00000000111100 0111223446667888899999999999998
Q ss_pred HHHhhc
Q psy9618 458 EFALSL 463 (542)
Q Consensus 458 e~al~~ 463 (542)
..+-++
T Consensus 296 ~~~~~h 301 (311)
T PRK05439 296 HKGADH 301 (311)
T ss_pred eCCCCC
Confidence 876443
No 117
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.94 E-value=7.7e-09 Score=107.22 Aligned_cols=166 Identities=16% Similarity=0.237 Sum_probs=91.7
Q ss_pred CccCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhc---HHHHHHHhccccCCCCCccccHHhH
Q psy9618 34 YNKAGEQVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLN---EEQHKKAAQNEYNFDHPDAFDFELL 110 (542)
Q Consensus 34 ~~~~~~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~---~e~~~~~~~~~~~fd~p~a~D~~lL 110 (542)
+...........|+++|++||||||+++.|+++||++++ ++|....... ..+... ..++. .| .+.-
T Consensus 124 ~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i---d~D~~i~~~~G~~i~ei~~-~~G~~------~f-r~~e 192 (309)
T PRK08154 124 LGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFV---ELNREIEREAGLSVSEIFA-LYGQE------GY-RRLE 192 (309)
T ss_pred HhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE---eHHHHHHHHhCCCHHHHHH-HHCHH------HH-HHHH
Confidence 333334555679999999999999999999999999977 7776543110 011000 00100 00 0111
Q ss_pred HHHHHHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChh----hhccCCEEEEEECCHHHHHHHhhhcc
Q psy9618 111 LPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQ----VLELLDMKVFVDTDADVRLARRLKRD 186 (542)
Q Consensus 111 ~~~L~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~----l~~l~Dl~IfLdad~d~rl~Rrl~Rd 186 (542)
.+.+..+.. ....+||..|......+. +.. ..++|||++|.+++.+|..+|+
T Consensus 193 ~~~l~~ll~-----------------------~~~~~VI~~Ggg~v~~~~~~~~l~~-~~~~V~L~a~~e~~~~Rl~~r~ 248 (309)
T PRK08154 193 RRALERLIA-----------------------EHEEMVLATGGGIVSEPATFDLLLS-HCYTVWLKASPEEHMARVRAQG 248 (309)
T ss_pred HHHHHHHHh-----------------------hCCCEEEECCCchhCCHHHHHHHHh-CCEEEEEECCHHHHHHHHhcCC
Confidence 222222210 112345555554333321 222 2478999999999999998875
Q ss_pred hhh---hcCC-HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 187 ILA---RGRD-LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 187 ~~~---rgr~-~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
... .+.+ .+.+.+.+.. ..|.|. .||++|++++.+. +.+++.|...+.
T Consensus 249 ~~rp~~~~~~~~e~i~~~~~~-R~~~y~--------~ad~~I~t~~~s~---ee~~~~I~~~l~ 300 (309)
T PRK08154 249 DLRPMADNREAMEDLRRILAS-REPLYA--------RADAVVDTSGLTV---AQSLARLRELVR 300 (309)
T ss_pred CCCCCCCCCChHHHHHHHHHH-HHHHHH--------hCCEEEECCCCCH---HHHHHHHHHHHH
Confidence 311 1122 2333333333 335443 3899999887433 466666666664
No 118
>PLN02199 shikimate kinase
Probab=98.92 E-value=4.4e-09 Score=107.11 Aligned_cols=110 Identities=19% Similarity=0.171 Sum_probs=68.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCC-CccccHHhHHHHHHHhHcCC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH-PDAFDFELLLPTLQRLKEGK 121 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~-p~a~D~~lL~~~L~~lk~g~ 121 (542)
...|.++|++||||||+++.|++.||++++ ++|...+...... ..+ ..|.. .+..-.+...+.|+.+..
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fI---DtD~lIe~~~~G~-sI~----eIf~~~GE~~FR~~E~e~L~~L~~-- 171 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFF---DCDTLIEQAMNGT-SVA----EIFVHHGENFFRGKETDALKKLSS-- 171 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEE---ehHHHHHHHhcCC-CHH----HHHHHhCHHHHHHHHHHHHHHHHh--
Confidence 358999999999999999999999999977 8998765321000 000 00110 111222444455555421
Q ss_pred eeccceechhhchhcccccccCCCcEEEEEccccccChhhhcc--CCEEEEEECCHHHHHHHhhh
Q psy9618 122 KVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLEL--LDMKVFVDTDADVRLARRLK 184 (542)
Q Consensus 122 ~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l--~Dl~IfLdad~d~rl~Rrl~ 184 (542)
..++||--|..+...+..+.+ ...+|||++|.++..+|+..
T Consensus 172 ----------------------~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 172 ----------------------RYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAA 214 (303)
T ss_pred ----------------------cCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhh
Confidence 124466666655555543332 25899999999999999874
No 119
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.92 E-value=2.5e-08 Score=93.23 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=29.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 46 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
|+++|++||||||+|+.|++.++.+++ +.|+|+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v---~~D~~~~ 34 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI---EGDDLHP 34 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE---eCccccC
Confidence 578999999999999999999986654 8999864
No 120
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.89 E-value=1.8e-08 Score=100.01 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=35.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
+.|+.|.|.|++||||||+|+.|++.+|++++ ++|+.++
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~i---s~gdllr 42 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHI---NMGNILR 42 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEE---ECChHHH
Confidence 34677999999999999999999999998876 9999987
No 121
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.89 E-value=1.6e-08 Score=96.63 Aligned_cols=118 Identities=25% Similarity=0.315 Sum_probs=69.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHH-HhHcCCee
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQ-RLKEGKKV 123 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~-~lk~g~~v 123 (542)
.|.|.|+|||||||+|+.|+++++++++ |+|++++.-..+.. + +...++ .+.+|+-+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl---stgd~~r~~~~~~t------------------~-lg~~~k~~i~~g~lv 59 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL---DTGDILRAAIAERT------------------E-LGEEIKKYIDKGELV 59 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE---cHhHHhHhhhccCC------------------h-HHHHHHHHHHcCCcc
Confidence 5889999999999999999999998877 99999984221110 0 111111 12233322
Q ss_pred ccceechhhchhcccccccCCCcEEEEEccccc-cChh-----hh---ccCCEEEEEECCHHHHHHHhhhcch
Q psy9618 124 DVPIYNFVTHSRETRTKPMYGANVIIFEGILAF-HNPQ-----VL---ELLDMKVFVDTDADVRLARRLKRDI 187 (542)
Q Consensus 124 ~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~-~~~~-----l~---~l~Dl~IfLdad~d~rl~Rrl~Rd~ 187 (542)
.-..+......+.... ....-+|++|.--. +..+ +. .-.|+++.++++.+..+.|...|..
T Consensus 60 ~d~i~~~~v~~rl~~~---d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~ 129 (178)
T COG0563 60 PDEIVNGLVKERLDEA---DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV 129 (178)
T ss_pred chHHHHHHHHHHHHhh---cccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc
Confidence 2222222222232221 11125888985211 0111 11 2458999999999999999998864
No 122
>PLN02674 adenylate kinase
Probab=98.88 E-value=1.7e-08 Score=100.92 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=33.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
+..|.|.|++||||||+|+.|++++|++++ |+++..+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi---s~GdllR~ 68 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL---ATGDMLRA 68 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE---chhHHHHH
Confidence 457889999999999999999999998877 89998863
No 123
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.87 E-value=4.3e-08 Score=93.05 Aligned_cols=40 Identities=35% Similarity=0.675 Sum_probs=34.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchh
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVL 84 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l 84 (542)
.+|.++|+|||||||+|+.|++.++.+++ .++.|+|+..+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~-~~~~D~~~~~~ 42 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWL-HFGVDSFIEAL 42 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCcc-ccCccHHHHhc
Confidence 58999999999999999999999987765 45889887643
No 124
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.85 E-value=2.1e-08 Score=111.45 Aligned_cols=162 Identities=17% Similarity=0.129 Sum_probs=91.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHH--HHhccccCCCCCccccHHhHHHHHHHh
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHK--KAAQNEYNFDHPDAFDFELLLPTLQRL 117 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~--~~~~~~~~fd~p~a~D~~lL~~~L~~l 117 (542)
+.+...|.+.|++||||||+++.||+.||++++ |+|.+.......... -...++..| .++-.+.|+.+
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fi---D~D~~ie~~~g~si~eif~~~Ge~~F-------R~~E~~~l~~~ 72 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFA---DADVEIEREIGMSIPSYFEEYGEPAF-------REVEADVVADM 72 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEE---EchHHHHHHHCcCHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 334568899999999999999999999999988 899875321100000 001111111 23333334433
Q ss_pred HcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhc-------cCCEEEEEECCHHHHHHHhhhcchhhh
Q psy9618 118 KEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLE-------LLDMKVFVDTDADVRLARRLKRDILAR 190 (542)
Q Consensus 118 k~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~-------l~Dl~IfLdad~d~rl~Rrl~Rd~~~r 190 (542)
.. ..+.||.-|..+...++.+. ....+|||++|.++..+|...+. .|
T Consensus 73 ~~------------------------~~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~--~R 126 (542)
T PRK14021 73 LE------------------------DFDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGG--GR 126 (542)
T ss_pred Hh------------------------cCCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCC--CC
Confidence 11 11335655554444444333 22489999999999999974322 12
Q ss_pred cC---CHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 191 GR---DLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 191 gr---~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
.. +..+.+.+..+...|.| .+.||++|++++.+. +++++.|.+.+.+
T Consensus 127 Pll~~~~~~~~~~l~~~R~~~Y-------~~~Ad~~i~~~~~~~---~~~~~~i~~~~~~ 176 (542)
T PRK14021 127 PMLNGDANKRWKKLFKQRDPVF-------RQVANVHVHTRGLTP---QAAAKKLIDMVAE 176 (542)
T ss_pred CCCCCCcHHHHHHHHHHHHHHH-------HhhCCEEEECCCCCH---HHHHHHHHHHHHh
Confidence 11 11222333333334444 345999999876544 3566666665544
No 125
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.82 E-value=1.5e-08 Score=96.93 Aligned_cols=118 Identities=20% Similarity=0.259 Sum_probs=65.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCeecc
Q psy9618 46 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVDV 125 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v~~ 125 (542)
|.|.|++||||||+|+.|++++|++++ ++|+..+..............-.+........+.+.+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i---~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------- 69 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI---STGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKE--------- 69 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE---ECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHH---------
Confidence 789999999999999999999997755 88888763211100000000000000001111122222211
Q ss_pred ceechhhchhcccccccCCCcEEEEEccccccC-----hhhhc---cCCEEEEEECCHHHHHHHhhhcch
Q psy9618 126 PIYNFVTHSRETRTKPMYGANVIIFEGILAFHN-----PQVLE---LLDMKVFVDTDADVRLARRLKRDI 187 (542)
Q Consensus 126 P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~-----~~l~~---l~Dl~IfLdad~d~rl~Rrl~Rd~ 187 (542)
..... ....-+|+||...... ..... ..+++|||++|.+++++|+..|..
T Consensus 70 ---------~l~~~---~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 70 ---------RLKKP---DCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred ---------HHhcc---cccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 11000 0123478899532111 11222 568999999999999999999874
No 126
>KOG3347|consensus
Probab=98.82 E-value=6.9e-08 Score=88.26 Aligned_cols=159 Identities=17% Similarity=0.292 Sum_probs=93.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
..-|.|+|.+|+||||+|.+||+.+|++|+ ++.++.+. ++.......+ ++. --+|-+.+.+.|..+-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i---~isd~vkE---n~l~~gyDE~--y~c-~i~DEdkv~D~Le~~m---- 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYI---EISDLVKE---NNLYEGYDEE--YKC-HILDEDKVLDELEPLM---- 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceE---ehhhHHhh---hcchhccccc--ccC-ccccHHHHHHHHHHHH----
Confidence 356889999999999999999999999998 56666541 1111000111 111 1345566666666542
Q ss_pred eccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhc--CCHH-HHHH
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARG--RDLE-GVIK 199 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rg--r~~~-~vl~ 199 (542)
..|..+|=.-|.-.|.. .+||++|.|+||-.....|+..|+..+.. ...+ ++..
T Consensus 74 -------------------~~Gg~IVDyHgCd~Fpe----rwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfg 130 (176)
T KOG3347|consen 74 -------------------IEGGNIVDYHGCDFFPE----RWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFG 130 (176)
T ss_pred -------------------hcCCcEEeecccCccch----hheeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHH
Confidence 12445555666655642 47899999999999999999988754421 1111 1111
Q ss_pred HHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 200 QYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 200 q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
-+.+.....| .+++|..-.++...+....+.+|..+..
T Consensus 131 v~~eea~eSy---------~~~iV~eL~s~~~Eem~~ni~ri~~w~~ 168 (176)
T KOG3347|consen 131 VVLEEARESY---------SPKIVVELQSETKEEMESNISRILNWTR 168 (176)
T ss_pred HHHHHHHHHc---------CCcceeecCcCCHHHHHHHHHHHHHHHH
Confidence 2222122222 1357766566555555555555555444
No 127
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.81 E-value=3.2e-08 Score=94.89 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
.+|+|.|+|||||||+++.|+..++.+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCe
Confidence 478999999999999999999988753
No 128
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.79 E-value=1.7e-07 Score=90.76 Aligned_cols=42 Identities=33% Similarity=0.285 Sum_probs=33.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhhc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYR 82 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy~ 82 (542)
.++.+|+|+|.+||||||+++.|++.|... .+..++.|++.+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~ 65 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH 65 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh
Confidence 457899999999999999999999988321 244667777764
No 129
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.78 E-value=1.7e-08 Score=97.22 Aligned_cols=174 Identities=10% Similarity=0.098 Sum_probs=86.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHh-ccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAA-QNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~-~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
++++|.|+|||||||||+++.|.+.+.--+..+-++ +...+.... ..+|.|-..+. ..+.++.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~T-------TR~~r~gE~~G~dY~fvs~~~--------F~~~i~~~ 67 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCT-------TRAPRPGDEEGKTYFFLTIEE--------FKKGIADG 67 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCcc-------CCCCCCCCCCCceeEeCCHHH--------HHHHHHcC
Confidence 578999999999999999999998863111100000 000000000 11233432222 23345556
Q ss_pred Ceeccceechhhchhcccc--cccCCCcEEEEEccccccChhhhccC-C--EEEEEECC-HHHHHHHhhhcchhhhcCCH
Q psy9618 121 KKVDVPIYNFVTHSRETRT--KPMYGANVIIFEGILAFHNPQVLELL-D--MKVFVDTD-ADVRLARRLKRDILARGRDL 194 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~--~~~~~~~vVIvEGi~~~~~~~l~~l~-D--l~IfLdad-~d~rl~Rrl~Rd~~~rgr~~ 194 (542)
+-+++-.|....+....+. ..+....++|++.-.... ..++..+ + +.||+.+| .+++.+|+.+|+.. +.
T Consensus 68 ~f~e~~~~~g~~YGt~~~~i~~~~~~g~~~i~d~~~~g~-~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~----s~ 142 (186)
T PRK14737 68 EFLEWAEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGA-KIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTD----SE 142 (186)
T ss_pred CeEEEEEECCeeecCcHHHHHHHHHcCCeEEEEcCHHHH-HHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCC----CH
Confidence 6666655544333322211 112334566777421110 1233333 3 68999985 68888888887542 22
Q ss_pred HHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 195 EGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 195 ~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
+.+........ +. ......+|.||.|+ + ++...+++...|.
T Consensus 143 e~i~~Rl~~~~-~e-----~~~~~~~D~vI~N~-d----le~a~~ql~~ii~ 183 (186)
T PRK14737 143 ESIEKRIENGI-IE-----LDEANEFDYKIIND-D----LEDAIADLEAIIC 183 (186)
T ss_pred HHHHHHHHHHH-HH-----HhhhccCCEEEECc-C----HHHHHHHHHHHHh
Confidence 22222222111 11 12346789999987 2 2344455555444
No 130
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.78 E-value=6.5e-08 Score=89.04 Aligned_cols=36 Identities=33% Similarity=0.508 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
+|.++|++||||||+|+.|++.++..+ ++.|.+++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~---i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPF---IDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEE---EeCcccccH
Confidence 578999999999999999999998654 488998753
No 131
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.78 E-value=5.9e-08 Score=93.64 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=24.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
..+|+|.|++||||||+++.|++.|+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999884
No 132
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.78 E-value=2.9e-08 Score=92.83 Aligned_cols=149 Identities=23% Similarity=0.273 Sum_probs=82.1
Q ss_pred CCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHH--HhccccCCCCCccccHHhHHHHHHHhHcCCeeccceec
Q psy9618 52 SASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKK--AAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVDVPIYN 129 (542)
Q Consensus 52 sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~--~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v~~P~yd 129 (542)
+||||||+++.||+.||++++ ++|.++.......... ...++..| .+.-.+.|+.+..
T Consensus 1 ~GsGKStvg~~lA~~L~~~fi---D~D~~i~~~~g~si~~i~~~~G~~~f-------r~~E~~~l~~l~~---------- 60 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFI---DLDDEIEERTGMSISEIFAEEGEEAF-------RELESEALRELLK---------- 60 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEE---EHHHHHHHHHTSHHHHHHHHHHHHHH-------HHHHHHHHHHHHC----------
T ss_pred CCCcHHHHHHHHHHHhCCCcc---ccCHHHHHHhCCcHHHHHHcCChHHH-------HHHHHHHHHHHhc----------
Confidence 699999999999999999987 9998874211100000 00111111 1223333444321
Q ss_pred hhhchhcccccccCCCcEEEEEccccccChhhhccC---CEEEEEECCHHHHHHHhhhcchhhhcCCHH---HHHHHHHh
Q psy9618 130 FVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELL---DMKVFVDTDADVRLARRLKRDILARGRDLE---GVIKQYVN 203 (542)
Q Consensus 130 ~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~---Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~---~vl~q~~~ 203 (542)
..+.||.-|......++.++++ ..+|||+++.++..+|+..++....-.... .....+.
T Consensus 61 --------------~~~~VIa~GGG~~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~- 125 (158)
T PF01202_consen 61 --------------ENNCVIACGGGIVLKEENRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLF- 125 (158)
T ss_dssp --------------SSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH-
T ss_pred --------------cCcEEEeCCCCCcCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHH-
Confidence 1155677765555455544433 589999999999999987765411011121 2223333
Q ss_pred hccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHH
Q psy9618 204 MVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQL 245 (542)
Q Consensus 204 ~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L 245 (542)
...+.|.. .++++++.++... +.++++|.+.|
T Consensus 126 ~R~~~Y~~-------~a~~~v~~~~~~~---~~i~~~i~~~l 157 (158)
T PF01202_consen 126 EREPLYEQ-------AADIVVDTDGSPP---EEIAEEILEFL 157 (158)
T ss_dssp HHHHHHHH-------HSSEEEETSSCHH---HHHHHHHHHHH
T ss_pred HHHHHHHh-------cCeEEEeCCCCCH---HHHHHHHHHHh
Confidence 33455543 4899999887432 46666665544
No 133
>KOG1017|consensus
Probab=98.77 E-value=7e-10 Score=104.52 Aligned_cols=85 Identities=24% Similarity=0.309 Sum_probs=70.4
Q ss_pred CCcccEEEECCCCCHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHH---HhhhhhhhhhhhHhhhhhHHHHHHHHH
Q psy9618 217 MVHADIIVPRGGENCVAIDLIVQHIHSQLQAVLLMDATVATGAAAMMAIR---ILLDHDVLLMDATVATGAAAMMAIRIL 293 (542)
Q Consensus 217 ~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~k~~~~~~~~t~~~~~~~~~---~~~~~~~~l~d~~~a~g~~~~~~~~~~ 293 (542)
+-++.+-|-++|+..+ .-+-+..+..--+||+++.++.|.+++.+|++ ++.-+.||||+|++.||+||++||+||
T Consensus 135 ~GNCGVSi~RSGEAME--qgLRdCCRsIRIGKILi~sd~~t~~akV~YArfppDI~sR~VLLmYPi~stGnTV~~Av~VL 212 (267)
T KOG1017|consen 135 RGNCGVSICRSGEAME--QGLRDCCRSIRIGKILIGSDQNTHEAKVLYARFPPDITSRRVLLMYPIISTGNTVCKAVEVL 212 (267)
T ss_pred CCCcceEEEechHHHH--HHHHHHHHHheeeeEEeccccccceeeEEEEecCCcccceeEEEEeeeecCCccHHHHHHHH
Confidence 5578888888876444 33444445555569999999999999999999 666688999999999999999999999
Q ss_pred hhCCCcchhh
Q psy9618 294 LDHDVPEGYI 303 (542)
Q Consensus 294 ~~~~~~~~~~ 303 (542)
++||||++.|
T Consensus 213 ~EhgVp~s~I 222 (267)
T KOG1017|consen 213 KEHGVPDSNI 222 (267)
T ss_pred HHcCCCcccE
Confidence 9999999875
No 134
>PLN02459 probable adenylate kinase
Probab=98.75 E-value=1.1e-07 Score=95.70 Aligned_cols=116 Identities=21% Similarity=0.252 Sum_probs=68.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHH-------HHHHhccccCCCCCccccHHhHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ-------HKKAAQNEYNFDHPDAFDFELLLPTL 114 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~-------~~~~~~~~~~fd~p~a~D~~lL~~~L 114 (542)
.++.|.|.|++||||||+|+.|++.+|++++ ++++.++.--... ......+.. -|+.+-..++.+.|
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~i---s~gdllR~ei~~~t~lg~~i~~~~~~G~l---VPdeiv~~ll~~~l 101 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHI---ATGDLVREEIKSSGPLGAQLKEIVNQGKL---VPDEIIFSLLSKRL 101 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEE---eCcHHHHHHHhccchhHHHHHHHHHcCCc---cCHHHHHHHHHHHH
Confidence 3456888999999999999999999998877 8888876310000 000001110 23333223333222
Q ss_pred HHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccC-hh-hh--ccCCEEEEEECCHHHHHHHhhhcc
Q psy9618 115 QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN-PQ-VL--ELLDMKVFVDTDADVRLARRLKRD 186 (542)
Q Consensus 115 ~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~-~~-l~--~l~Dl~IfLdad~d~rl~Rrl~Rd 186 (542)
.... ..+..-+|+||+=--.. .. +. ...|.+|+|+++.++.++|+..|.
T Consensus 102 ~~~~-----------------------~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 102 EAGE-----------------------EEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred hccc-----------------------ccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence 2110 01234589999621111 01 11 135899999999999999999885
No 135
>PRK12338 hypothetical protein; Provisional
Probab=98.75 E-value=3.6e-08 Score=101.87 Aligned_cols=39 Identities=31% Similarity=0.515 Sum_probs=31.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
|..|++|+|+|+|||||||+|+.||+++|+.++ ++.|.+
T Consensus 1 m~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~--~~tD~~ 39 (319)
T PRK12338 1 MRKPYVILIGSASGIGKSTIASELARTLNIKHL--IETDFI 39 (319)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHCCCeEE--ccChHH
Confidence 346899999999999999999999999997643 344444
No 136
>PRK14526 adenylate kinase; Provisional
Probab=98.74 E-value=1e-07 Score=93.58 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
.|+|.|++||||||+|+.|++.++++++ ++++..+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i---s~G~llr 36 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI---STGDLFR 36 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee---ecChHHH
Confidence 3779999999999999999999998766 8888876
No 137
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.74 E-value=8e-08 Score=94.71 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=50.4
Q ss_pred CCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccC-CCCcccEEEECCCCCHHHHHHHHHHHHH
Q psy9618 165 LDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAP-SMVHADIIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 165 ~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p-~~~~ADiVI~~~~~n~~ai~~iv~~I~~ 243 (542)
.|++|||++|++++++|+.+|+... ...+-..|.+.+...|.++..+ +...+++++.+. ++...++.+++.|..
T Consensus 143 Pd~~i~l~~~~~~~~~Ri~~R~~~~----e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~-~~~~~~e~i~~~I~~ 217 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKRGDPH----EMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW-TEAGDTEKVVEDIEY 217 (219)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCch----hhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC-CChhhHHHHHHHHHc
Confidence 4899999999999999988876321 1233345666677777766544 345567777654 356677777777643
No 138
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.72 E-value=2.8e-08 Score=92.77 Aligned_cols=43 Identities=40% Similarity=0.336 Sum_probs=34.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhhhchh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFYRVL 84 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg--~p~v~iIs~Ddfy~~l 84 (542)
++++|+++|.|||||||+|++|.++|. -..+.+|+.|.+.+.+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 368999999999999999999999993 2346688998887543
No 139
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.70 E-value=3e-07 Score=87.20 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=23.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
.+|+|+|+|||||||+++.|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 37899999999999999999999864
No 140
>PRK14529 adenylate kinase; Provisional
Probab=98.70 E-value=1.4e-07 Score=93.18 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=65.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHH-----HHHHHhccccCCCCCccccHHhHHHHHHHhHc
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEE-----QHKKAAQNEYNFDHPDAFDFELLLPTLQRLKE 119 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e-----~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~ 119 (542)
.|.|.|++||||||+|+.|++.++++++ |+.+.++.-... +..+..... .--.|+.+-.+++.+.|...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i---s~gdllr~~i~~~t~lg~~i~~~i~~-G~lvpdei~~~lv~~~l~~~-- 75 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI---ESGAIFREHIGGGTELGKKAKEYIDR-GDLVPDDITIPMILETLKQD-- 75 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc---ccchhhhhhccCCChHHHHHHHHHhc-cCcchHHHHHHHHHHHHhcc--
Confidence 4889999999999999999999998876 777776531000 000000000 00012232223332222211
Q ss_pred CCeeccceechhhchhcccccccCCCcEEEEEcccccc-Chh-----h---hccCCEEEEEECCHHHHHHHhhhcc
Q psy9618 120 GKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFH-NPQ-----V---LELLDMKVFVDTDADVRLARRLKRD 186 (542)
Q Consensus 120 g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~-~~~-----l---~~l~Dl~IfLdad~d~rl~Rrl~Rd 186 (542)
. ..-+|+||.---. ..+ + .-..|.+|+|++|.++.++|+..|.
T Consensus 76 -----------------------~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 127 (223)
T PRK14529 76 -----------------------G-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR 127 (223)
T ss_pred -----------------------C-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence 1 2348999962111 111 1 1236899999999999999999884
No 141
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.68 E-value=5.4e-07 Score=90.41 Aligned_cols=156 Identities=16% Similarity=0.241 Sum_probs=82.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhhchhcHHHHHHHhccccCCCCC-ccccHHhHHHHHHHhHcCC
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHP-DAFDFELLLPTLQRLKEGK 121 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p-~a~D~~lL~~~L~~lk~g~ 121 (542)
+|.++|.+||||||+|+.|++.|+.. .+.+++.|.+...+.. |... ...-.+.....++..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~------------~~~~~e~~~~~~~~~~i~~~---- 64 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV------------WKEKYEEFIRDSTLYLIKTA---- 64 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH------------hhHHhHHHHHHHHHHHHHHH----
Confidence 48899999999999999999998422 2345666655321100 0000 000001111111111
Q ss_pred eeccceechhhchhcccccccCCCcEEEEEccccccC--hhhhc------cCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 122 KVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN--PQVLE------LLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 122 ~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~--~~l~~------l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
+.....||+||...... ..+.. .-.+.||+++|.+++++|...|+. ...
T Consensus 65 --------------------l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~---~~~ 121 (249)
T TIGR03574 65 --------------------LKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE---KIP 121 (249)
T ss_pred --------------------HhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC---CCC
Confidence 11223588888643321 12221 123689999999999999887752 112
Q ss_pred HHHHHH-HHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 194 LEGVIK-QYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 194 ~~~vl~-q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
++++. .+..+..|... + ....++++|+.+.+ ..++++++.|...+.
T Consensus 122 -~~~i~~l~~r~e~p~~~-~---~wd~~~~~vd~~~~--~~~~ei~~~i~~~~~ 168 (249)
T TIGR03574 122 -NEVIKDMYEKFDEPGTK-Y---SWDLPDLTIDTTKK--IDYNEILEEILEISE 168 (249)
T ss_pred -HHHHHHHHHhhCCCCCC-C---CccCceEEecCCCC--CCHHHHHHHHHHHhh
Confidence 33333 33332223211 1 12348899876542 234677777776654
No 142
>PRK13975 thymidylate kinase; Provisional
Probab=98.68 E-value=1.2e-07 Score=91.17 Aligned_cols=27 Identities=41% Similarity=0.302 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
.+|+|.|+.||||||+++.|+++|+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 689999999999999999999999854
No 143
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.67 E-value=4.7e-08 Score=78.71 Aligned_cols=27 Identities=30% Similarity=0.712 Sum_probs=23.9
Q ss_pred EEEEEccccccCh---hhhccCCEEEEEEC
Q psy9618 147 VIIFEGILAFHNP---QVLELLDMKVFVDT 173 (542)
Q Consensus 147 vVIvEGi~~~~~~---~l~~l~Dl~IfLda 173 (542)
++|+||.+.+... .....+|++|||++
T Consensus 34 ~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 6999999988776 68889999999997
No 144
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.66 E-value=1.8e-07 Score=88.52 Aligned_cols=40 Identities=30% Similarity=0.316 Sum_probs=32.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFY 81 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy 81 (542)
.+.+|+|+|.+||||||+|+.|++.+... .+.+++.|.+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 35699999999999999999999998432 25567888764
No 145
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.65 E-value=3.9e-07 Score=86.95 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=42.7
Q ss_pred cCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHH
Q psy9618 164 LLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 164 l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~ 243 (542)
..|++||++++.+++.+|+.+|+..... ......|.+.+...|....... ....++|+++. + .+.+.+.|.+
T Consensus 125 ~~~~~i~l~~~~~~~~~R~~~R~~~~~~---~~~~~~~~~~~~~~y~~~~~~~-~~~~~~id~~~-~---~e~i~~~i~~ 196 (200)
T cd01672 125 KPDLTILLDIDPEVGLARIEARGRDDRD---EQEGLEFHERVREGYLELAAQE-PERIIVIDASQ-P---LEEVLAEILK 196 (200)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCcchh---hhhhHHHHHHHHHHHHHHHHhC-CCeEEEEeCCC-C---HHHHHHHHHH
Confidence 3589999999999999999888642211 1222334444455555444322 12235555443 2 3566666665
Q ss_pred HH
Q psy9618 244 QL 245 (542)
Q Consensus 244 ~L 245 (542)
.+
T Consensus 197 ~i 198 (200)
T cd01672 197 AI 198 (200)
T ss_pred HH
Confidence 54
No 146
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.64 E-value=9.4e-09 Score=99.30 Aligned_cols=110 Identities=28% Similarity=0.425 Sum_probs=85.6
Q ss_pred hhhhccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCce
Q psy9618 302 YIRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQIK 381 (542)
Q Consensus 302 ~~~~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (542)
.|+.|+.+..|.|||.+|.+......+.+..++|+||.+++.++.++.+. |..
T Consensus 70 ~l~~~~~~~~p~~d~~~~~~~~~~~~i~~~~~vI~eg~~~~~~~~~~~~~---------------------------d~~ 122 (198)
T cd02023 70 DLKNGKSVEIPVYDFKTHSRLKETVTVYPADVIILEGILALYDKELRDLM---------------------------DLK 122 (198)
T ss_pred HHHCCCCEeccccccccCcccCCceecCCCCEEEEechhhccchhHHhhc---------------------------CeE
Confidence 45678899999999999998655557889999999999999988777653 899
Q ss_pred eecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHH
Q psy9618 382 GLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIE 458 (542)
Q Consensus 382 ~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie 458 (542)
+||+++.++++.||+.||..+||+..+.. +..+.....+....|+.+....|++++.
T Consensus 123 i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~--------------------~~~~~~~~~~~~~~~i~~~~~~aD~ii~ 179 (198)
T cd02023 123 IFVDTDADVRLIRRIERDIVERGRDLESV--------------------INQYLKFVKPMHEQFIEPTKRYADVIIP 179 (198)
T ss_pred EEEECChhHHHHHHHHHHhhhcCCCHHHH--------------------HHHHHHhhhhhHHHhCccchhceeEEEC
Confidence 99999999999999999999999765431 2333333445555666666666666665
No 147
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.64 E-value=1.1e-07 Score=90.37 Aligned_cols=172 Identities=18% Similarity=0.254 Sum_probs=90.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhc-cccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQ-NEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~-~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
...+|.|+||||+||||+.++|.+..++.+. ||+= +...+..... -+|.|-..+. ..+.+.++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~S--VS~T------TR~pR~gEv~G~dY~Fvs~~E--------F~~~i~~~ 66 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFS--VSAT------TRKPRPGEVDGVDYFFVTEEE--------FEELIERD 66 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEE--EEec------cCCCCCCCcCCceeEeCCHHH--------HHHHHhcC
Confidence 3579999999999999999999999855433 2320 1111111111 2455533332 24445566
Q ss_pred Ceeccceechhhchhccc---ccccCCCcEEEEEc-cccccChhhhccC-C-EEEEEECCHHHHHHHhhhcchhhhcCCH
Q psy9618 121 KKVDVPIYNFVTHSRETR---TKPMYGANVIIFEG-ILAFHNPQVLELL-D-MKVFVDTDADVRLARRLKRDILARGRDL 194 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~---~~~~~~~~vVIvEG-i~~~~~~~l~~l~-D-l~IfLdad~d~rl~Rrl~Rd~~~rgr~~ 194 (542)
+-+++..|.-........ .....|.++ |+|- +... ..++..+ + ..||+.+|.-+.++||+.+. |.+.
T Consensus 67 ~fLE~a~~~gnyYGT~~~~ve~~~~~G~~v-ildId~qGa--~qvk~~~p~~v~IFi~pPs~eeL~~RL~~R----gtds 139 (191)
T COG0194 67 EFLEWAEYHGNYYGTSREPVEQALAEGKDV-ILDIDVQGA--LQVKKKMPNAVSIFILPPSLEELERRLKGR----GTDS 139 (191)
T ss_pred CcEEEEEEcCCcccCcHHHHHHHHhcCCeE-EEEEehHHH--HHHHHhCCCeEEEEEcCCCHHHHHHHHHcc----CCCC
Confidence 667776654333322111 111234443 3333 2111 1233333 4 56999999999998888764 4444
Q ss_pred HHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 195 EGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 195 ~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
++++............ .....|.+|.|+. ++..++.+...+.
T Consensus 140 ~e~I~~Rl~~a~~Ei~-----~~~~fdyvivNdd-----~e~a~~~l~~ii~ 181 (191)
T COG0194 140 EEVIARRLENAKKEIS-----HADEFDYVIVNDD-----LEKALEELKSIIL 181 (191)
T ss_pred HHHHHHHHHHHHHHHH-----HHHhCCEEEECcc-----HHHHHHHHHHHHH
Confidence 4443322222221111 1233699998773 4455555655554
No 148
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.63 E-value=3.3e-08 Score=89.74 Aligned_cols=36 Identities=33% Similarity=0.599 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
+|.++|++||||||+++.|++.++ ..+|+.|.++..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~---~~~i~~D~~~~~ 36 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG---AVVISQDEIRRR 36 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST---EEEEEHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC---CEEEeHHHHHHH
Confidence 688999999999999999999998 445699988753
No 149
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.62 E-value=5.1e-09 Score=100.99 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=63.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHH---hhhhhhhhhhhHhhhhhHHHHHHHHHhhCCC
Q psy9618 222 IIVPRGGENCVAIDLIVQHIHSQLQAVLLMDATVATGAAAMMAIRI---LLDHDVLLMDATVATGAAAMMAIRILLDHDV 298 (542)
Q Consensus 222 iVI~~~~~n~~ai~~iv~~I~~~L~~k~~~~~~~~t~~~~~~~~~~---~~~~~~~l~d~~~a~g~~~~~~~~~~~~~~~ 298 (542)
+-|-+.|.... +-+.+.+.+.--.++++++++.|..+..||.|+ +.++.|+++|||+|||||+++||+.|+++|
T Consensus 75 V~ILRAGl~m~--~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~~G- 151 (210)
T COG0035 75 VPILRAGLGMV--EGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLKKRG- 151 (210)
T ss_pred EEEeeccccHH--HHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCCeEEEECchhhccHhHHHHHHHHHHhC-
Confidence 33445554444 566666665555689999999999999999995 456779999999999999999999999998
Q ss_pred cchhhh
Q psy9618 299 PEGYIR 304 (542)
Q Consensus 299 ~~~~~~ 304 (542)
..++++
T Consensus 152 ~~~~I~ 157 (210)
T COG0035 152 GPKNIK 157 (210)
T ss_pred CCceEE
Confidence 776654
No 150
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.60 E-value=1e-06 Score=84.21 Aligned_cols=42 Identities=31% Similarity=0.308 Sum_probs=33.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCe--EEeecchhhhc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPW--VTLLSMDSFYR 82 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~--v~iIs~Ddfy~ 82 (542)
..+.+|+|+|.+||||||+++.|+..+..+. +..++.|.+.+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~ 59 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH 59 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHh
Confidence 3468999999999999999999999984322 44567777653
No 151
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.57 E-value=6.1e-07 Score=98.55 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=31.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
.|+|+|++||||||+++.|++.||++++ ++|.+..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~i---d~D~~i~ 36 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFI---DMDEEIE 36 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEE---ECcHHHH
Confidence 5899999999999999999999999877 8998764
No 152
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.54 E-value=8.6e-07 Score=99.04 Aligned_cols=162 Identities=23% Similarity=0.324 Sum_probs=88.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC-Ce--EEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV-PW--VTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRL 117 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~-p~--v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~l 117 (542)
+++.+|+++|.+||||||+|+.|++.|+. .. +..++.|.+.+.+. ++..|... +.+.....+..+
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~---------ge~~f~~~---er~~~~~~l~~~ 457 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS---------SELGFSKE---DRDLNILRIGFV 457 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc---------CCCCCCHH---HHHHHHHHHHHH
Confidence 45789999999999999999999999985 22 45678887743221 22233211 111111111111
Q ss_pred HcCCeeccceechhhchhcccccccCCCcEEEEEccccccC--hhhhccC----C-EEEEEECCHHHHHHHhhhcchhhh
Q psy9618 118 KEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN--PQVLELL----D-MKVFVDTDADVRLARRLKRDILAR 190 (542)
Q Consensus 118 k~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~--~~l~~l~----D-l~IfLdad~d~rl~Rrl~Rd~~~r 190 (542)
. . ..+....++|++.+..... +.++.++ . +.|||++|.+++.+|. +|.....
T Consensus 458 a-------------------~-~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~-rr~Ll~~ 516 (568)
T PRK05537 458 A-------------------S-EITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRD-RKGLYAK 516 (568)
T ss_pred H-------------------H-HHHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhc-ccccccc
Confidence 0 0 0011235567776543321 2222222 2 4799999999998885 3322111
Q ss_pred cCCHHHHHHHHHhhccchhhccccCCC--CcccEEEECCCCCHHHHHHHHHHHHHHHHHh
Q psy9618 191 GRDLEGVIKQYVNMVKPAFSTFIAPSM--VHADIIVPRGGENCVAIDLIVQHIHSQLQAV 248 (542)
Q Consensus 191 gr~~~~vl~q~~~~v~p~y~~~i~p~~--~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~k 248 (542)
.+ .+.++.+.... .++. ..||++|+++..+ +++++++|...|+++
T Consensus 517 ~~--~~~i~~l~~~R--------~~yy~p~~Adl~IDt~~~s---~~eiv~~Il~~L~~~ 563 (568)
T PRK05537 517 AR--EGKIKGFTGIS--------DPYEPPANPELVIDTTNVT---PDECAHKILLYLEEK 563 (568)
T ss_pred ch--hchhhcccccc--------ccccCCCCCcEEEECCCCC---HHHHHHHHHHHHHHc
Confidence 11 12222221111 1222 4689999977533 357788888877753
No 153
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.54 E-value=3.8e-07 Score=86.79 Aligned_cols=163 Identities=21% Similarity=0.203 Sum_probs=79.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCC--CCCccccHHhHHHHHHHhHcCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNF--DHPDAFDFELLLPTLQRLKEGK 121 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~f--d~p~a~D~~lL~~~L~~lk~g~ 121 (542)
.||.+.|+|.|||||+|++|.+.|..||+ .++.|.|...+.+.... ....+.| +.|+. -..+...+..+..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~-~l~~D~f~~~~~~~~~~--~~~g~~~~~~~~~~--~~~~~~~~~~~~~-- 74 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWL-HLSVDTFVDMMPPGRYR--PGDGLEPAGDRPDG--GPLFRRLYAAMHA-- 74 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EE-EEEHHHHHHHS-GGGGT--STTSEEEETTSEEE---HHHHHHHHHHHH--
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeE-EEecChHHhhcCccccc--CCccccccccCCch--hHHHHHHHHHHHH--
Confidence 48999999999999999999999999988 56999998643322111 0111111 11111 0111111111100
Q ss_pred eeccceechhhchhcccccccCCCcEEEEEccccccC---hhhhc---cCC-EEEEEECCHHHHHHHhhhcchhhhcCCH
Q psy9618 122 KVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN---PQVLE---LLD-MKVFVDTDADVRLARRLKRDILARGRDL 194 (542)
Q Consensus 122 ~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~---~~l~~---l~D-l~IfLdad~d~rl~Rrl~Rd~~~rgr~~ 194 (542)
... ...-.| .-||+|..+.-.. +.+++ -++ +.|-|.||.+++.+|-..|.-...|
T Consensus 75 -------------~ia-a~a~aG-~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G--- 136 (174)
T PF07931_consen 75 -------------AIA-AMARAG-NNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG--- 136 (174)
T ss_dssp -------------HHH-HHHHTT--EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT---
T ss_pred -------------HHH-HHHhCC-CCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH---
Confidence 000 000022 3367776543221 22323 234 5688999999888887777632222
Q ss_pred HHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHH
Q psy9618 195 EGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQL 245 (542)
Q Consensus 195 ~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L 245 (542)
....|+. .++ . -...|+.|+++..+.. +.++.|.+.|
T Consensus 137 -~a~~q~~-~Vh--------~-~~~YDleVDTs~~sp~---ecA~~I~~~~ 173 (174)
T PF07931_consen 137 -LAAWQAE-HVH--------E-GGRYDLEVDTSATSPE---ECAREILARL 173 (174)
T ss_dssp -HHHHHTT-GGG--------T-T---SEEEETTSS-HH---HHHHHHHTT-
T ss_pred -HHHHHHh-hcc--------c-CCCCCEEEECCCCCHH---HHHHHHHHHh
Confidence 2223332 122 1 1236999998875544 6666666544
No 154
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.53 E-value=1.1e-06 Score=84.36 Aligned_cols=28 Identities=32% Similarity=0.261 Sum_probs=25.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
.++|+|.|++||||||+++.|+++|+..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999643
No 155
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.52 E-value=1.3e-07 Score=91.93 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=31.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 81 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy 81 (542)
++.+|.|+|.|||||||+|+.|++++|+.. +++.|-+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~~r 39 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDYLR 39 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHHHH
Confidence 468999999999999999999999999754 34555443
No 156
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.52 E-value=1.4e-07 Score=87.28 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=61.1
Q ss_pred EEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCeeccce
Q psy9618 48 ICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVDVPI 127 (542)
Q Consensus 48 I~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v~~P~ 127 (542)
|.|++||||||+|+.|++++|+.++ ++++..+...... . ..-...-+.+.+|+.+.-..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~i---s~~~llr~~~~~~---------------s---~~g~~i~~~l~~g~~vp~~~ 59 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHI---SVGDLLREEIKSD---------------S---ELGKQIQEYLDNGELVPDEL 59 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEE---EHHHHHHHHHHTT---------------S---HHHHHHHHHHHTTSS--HHH
T ss_pred CcCCCCCChHHHHHHHHHhcCccee---chHHHHHHHHhhh---------------h---HHHHHHHHHHHhhccchHHH
Confidence 6899999999999999999997655 8887765211000 0 00011112233444332222
Q ss_pred echhhchhcccccccCCCcEEEEEccccccC-----hh----hhccCCEEEEEECCHHHHHHHhhh
Q psy9618 128 YNFVTHSRETRTKPMYGANVIIFEGILAFHN-----PQ----VLELLDMKVFVDTDADVRLARRLK 184 (542)
Q Consensus 128 yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~-----~~----l~~l~Dl~IfLdad~d~rl~Rrl~ 184 (542)
.......+.... ....-+|+||.-.-.. .. .....+.+|+|+++.+++.+|...
T Consensus 60 v~~ll~~~l~~~---~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 60 VIELLKERLEQP---PCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp HHHHHHHHHHSG---GTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred HHHHHHHHHhhh---cccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 222222222211 2235589999621110 11 122347899999999999999776
No 157
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.49 E-value=7.2e-06 Score=78.23 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
-+++|.|++||||||+++.|+..++.. .++.|+++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~---~i~gd~~~~ 39 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK---FIDGDDLHP 39 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE---EECCcccCC
Confidence 478999999999999999999999864 458888864
No 158
>PRK13973 thymidylate kinase; Provisional
Probab=98.45 E-value=1.1e-06 Score=86.12 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=26.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc---CCCeE
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL---NVPWV 72 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v 72 (542)
..+|+|.|..||||||+++.|++.| |.+.+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~ 35 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVL 35 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4789999999999999999999999 55433
No 159
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.45 E-value=1.9e-06 Score=81.63 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
.+|+|.|++||||||+++.|++.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 48999999999999999999997753
No 160
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.43 E-value=1.2e-06 Score=89.84 Aligned_cols=41 Identities=29% Similarity=0.453 Sum_probs=35.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
.+.|++|.|+|++||||||+|..|+++||.+. +|++|.+..
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~--vi~~D~~re 129 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRLGIRS--VIGTDSIRE 129 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCE--EEechHHHH
Confidence 34689999999999999999999999999874 468998864
No 161
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.43 E-value=1.4e-06 Score=89.37 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecchhhhc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL-NVPWVTLLSMDSFYR 82 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L-g~p~v~iIs~Ddfy~ 82 (542)
+.+|.++|++||||||+|+.|++++ +.. .++.|.+.+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~---~l~~D~~r~ 39 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAV---NVNRDDLRQ 39 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCE---EEeccHHHH
Confidence 4789999999999999999999999 544 458888754
No 162
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.42 E-value=1.1e-06 Score=83.99 Aligned_cols=173 Identities=17% Similarity=0.243 Sum_probs=84.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeE-EeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWV-TLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGK 121 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v-~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~ 121 (542)
+.+|.|+|||||||||+++.|.+.+.-.+. .+.++-.--+ +.+ ....+|.|-..+. ..+..+.++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r---~~E---~~g~~y~fvs~~~--------f~~~~~~~~ 67 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPR---PGE---VDGVDYHFVSKEE--------FERMIKAGE 67 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GG---TTS----TTTSEEE--HHH--------HHHHHHTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCc---ccc---cCCcceEEEeech--------hhhhhcccc
Confidence 468889999999999999999999864332 1222211110 000 0011333422222 123344555
Q ss_pred eeccceechhhchhcccc--cccCCCcEEEEEcc-ccccChhhh--ccCCEEEEEECCHHHHHHHhhhcchhhhcCCH-H
Q psy9618 122 KVDVPIYNFVTHSRETRT--KPMYGANVIIFEGI-LAFHNPQVL--ELLDMKVFVDTDADVRLARRLKRDILARGRDL-E 195 (542)
Q Consensus 122 ~v~~P~yd~~~~~~~~~~--~~~~~~~vVIvEGi-~~~~~~~l~--~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~-~ 195 (542)
-+++-.|+...+...... ..+.....++++.- -.. ..++ ...-+.|||.++....++|++++. |.+. +
T Consensus 68 fie~~~~~g~~YGt~~~~i~~~~~~gk~~il~~~~~g~--~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r----~~~~~~ 141 (183)
T PF00625_consen 68 FIEYGEYDGNYYGTSKSAIDKVLEEGKHCILDVDPEGV--KQLKKAGFNPIVIFIKPPSPEVLKRRLRRR----GDESEE 141 (183)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTTEEEEEETHHHH--HHHHHCTTTEEEEEEEESSHHHHHHHHHTT----THCHHH
T ss_pred EEEEeeecchhhhhccchhhHhhhcCCcEEEEccHHHH--HHHHhcccCceEEEEEccchHHHHHHHhcc----ccccHH
Confidence 566655543333221111 11122334555432 111 1222 233368999988777777776543 3222 2
Q ss_pred HHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 196 GVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 196 ~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
.+.++... ....+..+ . ..|.+|.|+ .++..+++|.+.++
T Consensus 142 ~i~~r~~~-~~~~~~~~----~-~fd~vi~n~-----~le~~~~~l~~ii~ 181 (183)
T PF00625_consen 142 EIEERLER-AEKEFEHY----N-EFDYVIVND-----DLEEAVKELKEIIE 181 (183)
T ss_dssp HHHHHHHH-HHHHHGGG----G-GSSEEEECS-----SHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHhHh----h-cCCEEEECc-----CHHHHHHHHHHHHH
Confidence 33333222 11122211 1 179999875 34666777766665
No 163
>PLN02842 nucleotide kinase
Probab=98.42 E-value=2.2e-06 Score=93.59 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=28.5
Q ss_pred EEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 48 ICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 48 I~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
|.|++||||||+|+.|++.||+.++ ++++..+
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hI---s~gdLLR 33 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHI---STGDLLR 33 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEE---EccHHHH
Confidence 7899999999999999999998766 7777765
No 164
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=98.42 E-value=1.9e-06 Score=81.93 Aligned_cols=183 Identities=24% Similarity=0.290 Sum_probs=119.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeE--EeecchhhhchhcHHH---HHHHh--ccccCCCCCccccHHhHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWV--TLLSMDSFYRVLNEEQ---HKKAA--QNEYNFDHPDAFDFELLLPTLQ 115 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v--~iIs~Ddfy~~l~~e~---~~~~~--~~~~~fd~p~a~D~~lL~~~L~ 115 (542)
-.||+|+|.||+|.||.+.++-+-++.-.+ .-|..|+|++--.++. +.++. ...+.+=.|++.|+..|.+...
T Consensus 5 hPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f~ 84 (289)
T COG3954 5 HPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFI 84 (289)
T ss_pred CceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHHH
Confidence 469999999999999998877666643222 2348899987433332 11222 2233333689999999999998
Q ss_pred HhHcCCeeccceechhhchh---------ccccccc-CCCcEEEEEccccc---cChhhhccCCEEEEEECCHHHHHHHh
Q psy9618 116 RLKEGKKVDVPIYNFVTHSR---------ETRTKPM-YGANVIIFEGILAF---HNPQVLELLDMKVFVDTDADVRLARR 182 (542)
Q Consensus 116 ~lk~g~~v~~P~yd~~~~~~---------~~~~~~~-~~~~vVIvEGi~~~---~~~~l~~l~Dl~IfLdad~d~rl~Rr 182 (542)
+..+...-....|-+...+. ...|... .+.++++.||.... ..-.+...+|++|-+-.-....+-..
T Consensus 85 eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~lpe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWIQK 164 (289)
T COG3954 85 EYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWIQK 164 (289)
T ss_pred HhcccCCcchhhhhhchhhcCccCCCCCCCCCcccCCCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHHHH
Confidence 76543221222221111111 1234444 34799999997532 23356678899887766555555566
Q ss_pred hhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEEC
Q psy9618 183 LKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPR 226 (542)
Q Consensus 183 l~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~ 226 (542)
+.||..+||.+.+.+++...+. .++|-.|+.|+....++-+.+
T Consensus 165 ~~RDt~~RGhSrEAVmDsivRs-MdDYinyItPQFSrThINFQR 207 (289)
T COG3954 165 LIRDTSERGHSREAVMDSVVRS-MDDYINYITPQFSRTHINFQR 207 (289)
T ss_pred HHhcccccCccHHHHHHHHHHh-hhhHHhhcCccccccccceee
Confidence 7789889999999998877663 478999999988777765543
No 165
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.35 E-value=7.5e-06 Score=84.10 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=24.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
+.+|+|+|++||||||+++.|. .+|+.++
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~ 34 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE-DLGYYCV 34 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH-HcCCeEE
Confidence 4699999999999999999985 5676443
No 166
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.31 E-value=2.2e-06 Score=82.12 Aligned_cols=173 Identities=13% Similarity=0.080 Sum_probs=82.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg--~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
+.+|.|+|||||||+|+++.|.+.+. +.++ +.++-..-+ +.+. ...+|.|-.. .+....++.|
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~-~~~TtR~~r---~~e~---~g~dy~fvs~--------~ef~~~i~~g 66 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERV-VSHTTRPPR---PGEV---NGVDYHFVSR--------EEFEDDIKSG 66 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEee-eeecCCCCC---CCCc---CCceEEECCH--------HHHHHHHHcC
Confidence 46899999999999999999999862 3222 112111111 0000 0112333221 1223344556
Q ss_pred Ceeccceechhhchhccc--ccccCCCcEEEEEccccccChhhhc-cCC-EEEEEECCH-HHHHHHhhhcchhhhcCCHH
Q psy9618 121 KKVDVPIYNFVTHSRETR--TKPMYGANVIIFEGILAFHNPQVLE-LLD-MKVFVDTDA-DVRLARRLKRDILARGRDLE 195 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~--~~~~~~~~vVIvEGi~~~~~~~l~~-l~D-l~IfLdad~-d~rl~Rrl~Rd~~~rgr~~~ 195 (542)
+-+++..|....+..... ...+.....+|+++-.... ..+.. ..+ ++|||.++. +...+|+..|+.. +.+
T Consensus 67 ~fve~~~~~g~~YGt~~~~i~~~~~~~~~~ild~~~~~~-~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~----~~~ 141 (184)
T smart00072 67 LFLEWGEYSGNYYGTSKETIRQVAEQGKHCLLDIDPQGV-KQLRKAQLYPIVIFIAPPSSEELERRLRGRGTE----TAE 141 (184)
T ss_pred CeEEEEEEcCcCcccCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCC----CHH
Confidence 656655554332222111 0111234567777753221 12222 223 789998554 5566666655321 223
Q ss_pred HHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 196 GVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 196 ~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
.+.++..... ... . .....|.+|.|+. ++...+++.+.+.
T Consensus 142 ~i~~rl~~a~-~~~----~-~~~~fd~~I~n~~-----l~~~~~~l~~~i~ 181 (184)
T smart00072 142 RIQKRLAAAQ-KEA----Q-EYHLFDYVIVNDD-----LEDAYEELKEILE 181 (184)
T ss_pred HHHHHHHHHH-HHH----h-hhccCCEEEECcC-----HHHHHHHHHHHHH
Confidence 3333222211 111 1 1244799998762 3445566665554
No 167
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.31 E-value=1.2e-05 Score=84.33 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCC---eEEeecchhhhc
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVP---WVTLLSMDSFYR 82 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p---~v~iIs~Ddfy~ 82 (542)
+++++|.+||||||+++.|++.|... .+.+++.|+|+.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 36799999999999999999887521 366789999985
No 168
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.30 E-value=3.3e-06 Score=81.38 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=28.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD 78 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~D 78 (542)
|++|.++|.+||||||+|+.|++.|......+++..
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~ 36 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLE 36 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccc
Confidence 467889999999999999999999964433334443
No 169
>PRK07933 thymidylate kinase; Validated
Probab=98.27 E-value=8.3e-06 Score=80.18 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=44.8
Q ss_pred cCCEEEEEECCHHHHHHHhhhcchhhh--cCC-HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHH
Q psy9618 164 LLDMKVFVDTDADVRLARRLKRDILAR--GRD-LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQH 240 (542)
Q Consensus 164 l~Dl~IfLdad~d~rl~Rrl~Rd~~~r--gr~-~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~ 240 (542)
.-|++|||++|+++.++|+.+|+.... +.+ .+. ...|.+.+...|..+........-++|+.+ . .++++.+.
T Consensus 132 ~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~-~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~--~--~~e~v~~~ 206 (213)
T PRK07933 132 VPDLQVLLDVPVELAAERARRRAAQDADRARDAYER-DDGLQQRTGAVYAELAAQGWGGPWLVVDPD--V--DPAALAAR 206 (213)
T ss_pred CCCEEEEecCCHHHHHHHHHhhccccCCcccccccc-cHHHHHHHHHHHHHHHHhcCCCCeEEeCCC--C--CHHHHHHH
Confidence 359999999999999999888854211 111 111 235566666667666543212223444432 2 34677777
Q ss_pred HHHHH
Q psy9618 241 IHSQL 245 (542)
Q Consensus 241 I~~~L 245 (542)
|+..|
T Consensus 207 i~~~~ 211 (213)
T PRK07933 207 LAAAL 211 (213)
T ss_pred HHHHh
Confidence 76544
No 170
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.27 E-value=3e-06 Score=81.03 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
||.|++..|||++|+|++||++||++++
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~ 28 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYY 28 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccC
Confidence 7999999999999999999999999876
No 171
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.27 E-value=1.8e-06 Score=82.83 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=37.2
Q ss_pred cCCEEEEEECCHHHHHHHhhhcchhhhcCCHHH-HHHHHHhhccchhhccccC-CCCcccEEEE
Q psy9618 164 LLDMKVFVDTDADVRLARRLKRDILARGRDLEG-VIKQYVNMVKPAFSTFIAP-SMVHADIIVP 225 (542)
Q Consensus 164 l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~-vl~q~~~~v~p~y~~~i~p-~~~~ADiVI~ 225 (542)
..|+.||++++++++++|..+|+.. .+. ....|.+.+...|..+... .+....+++.
T Consensus 124 ~pd~~i~l~~~~~~~~~Ri~~R~r~-----~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vi 182 (193)
T cd01673 124 PPDLVIYLDASPETCLKRIKKRGRP-----EEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLII 182 (193)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCcH-----hhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 4689999999999999998777532 221 1234566667777777765 2233455444
No 172
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.27 E-value=1.4e-05 Score=77.35 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=24.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
...+|+|.|+|||||||+++.|++.++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456999999999999999999999875
No 173
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.26 E-value=2.6e-05 Score=73.41 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=25.5
Q ss_pred EcCCCCcHHHHHHHHHHHcCCCeEEeecchhhh
Q psy9618 49 CGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 81 (542)
Q Consensus 49 ~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy 81 (542)
.|+|||||||+++.|++.+|..++ +.|.++
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~---~~d~~~ 30 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFL---DGDFLH 30 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEE---eCccCC
Confidence 499999999999999999986554 777664
No 174
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.26 E-value=5.7e-06 Score=93.97 Aligned_cols=43 Identities=30% Similarity=0.338 Sum_probs=35.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhhhchh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVL 84 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddfy~~l 84 (542)
++.+|.++|.+||||||+|++|+++|+. ..+..|+.|.+.+.+
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l 503 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGL 503 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhcc
Confidence 4899999999999999999999999842 335577999987643
No 175
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=98.23 E-value=3.3e-08 Score=96.78 Aligned_cols=56 Identities=30% Similarity=0.427 Sum_probs=46.5
Q ss_pred hHhhhhhhhhhhHHHHHHHHh---hhhhhhhhhhHhhhhhHHHHHHHHHhhCCCcchhh
Q psy9618 248 VLLMDATVATGAAAMMAIRIL---LDHDVLLMDATVATGAAAMMAIRILLDHDVPEGYI 303 (542)
Q Consensus 248 k~~~~~~~~t~~~~~~~~~~~---~~~~~~l~d~~~a~g~~~~~~~~~~~~~~~~~~~~ 303 (542)
++++++++.|..+..+|.+++ ..+.|+|+|||+|||+|+++||+.|++||++++++
T Consensus 96 ~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I 154 (207)
T PF14681_consen 96 HIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIAAIEILKEHGVPEENI 154 (207)
T ss_dssp EEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEE
T ss_pred EEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHHHHHHHHHcCCCcceE
Confidence 667788888888888887744 45779999999999999999999999999988775
No 176
>PRK13976 thymidylate kinase; Provisional
Probab=98.23 E-value=3.4e-06 Score=82.76 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=42.7
Q ss_pred CCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCC--CCHHHHHHHHHHHH
Q psy9618 165 LDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGG--ENCVAIDLIVQHIH 242 (542)
Q Consensus 165 ~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~--~n~~ai~~iv~~I~ 242 (542)
-|++|||++|+++.++|+.+|.. +..-..|.+.+...|..+....... -++|+... .+...++.+.+.|+
T Consensus 125 PDl~i~Ldv~~e~a~~Ri~~~~~-------e~~~~~~l~~v~~~Y~~l~~~~~~~-~~~id~~~~~~~~~~~e~v~~~i~ 196 (209)
T PRK13976 125 PDITFVLDIDIELSLSRADKNGY-------EFMDLEFYDKVRKGFREIVIKNPHR-CHVITCIDAKDNIEDINSVHLEIV 196 (209)
T ss_pred CCEEEEEeCCHHHHHHHhcccch-------hcccHHHHHHHHHHHHHHHHhCCCC-eEEEECCCCccCcCCHHHHHHHHH
Confidence 59999999999999999854322 2222345555666666655432222 33344322 12112566666666
Q ss_pred HHHHH
Q psy9618 243 SQLQA 247 (542)
Q Consensus 243 ~~L~~ 247 (542)
+.+.+
T Consensus 197 ~~i~~ 201 (209)
T PRK13976 197 KLLHA 201 (209)
T ss_pred HHHHH
Confidence 66554
No 177
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=5.6e-06 Score=81.98 Aligned_cols=43 Identities=33% Similarity=0.458 Sum_probs=37.6
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhh
Q psy9618 37 AGEQVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 81 (542)
Q Consensus 37 ~~~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy 81 (542)
..+++.|.||.|.|.||.||||+|..||.+||++.+ |++|..-
T Consensus 83 ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~v--isTD~IR 125 (299)
T COG2074 83 IRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSV--ISTDSIR 125 (299)
T ss_pred HhccCCCeEEEecCCCCCChhHHHHHHHHHcCCcee--ecchHHH
Confidence 447788999999999999999999999999998855 6888653
No 178
>PLN02924 thymidylate kinase
Probab=98.21 E-value=1.7e-05 Score=78.51 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=28.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCe
Q psy9618 39 EQVEPFVIGICGGSASGKTTVATKIIESLNVPW 71 (542)
Q Consensus 39 ~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~ 71 (542)
+.+..++|+|.|..||||||+++.|++.|+..+
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g 44 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLG 44 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 445568999999999999999999999996543
No 179
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.20 E-value=3.5e-05 Score=75.31 Aligned_cols=35 Identities=29% Similarity=0.578 Sum_probs=27.8
Q ss_pred CCCCCccCCCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 30 RPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 30 ~ppw~~~~~~~~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
+-||.-+ .+..+.+|.|+|||||||||+++.|.+.
T Consensus 2 ~~~~~~~--~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 2 MNPWLFN--KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCccccC--CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4577532 3456789999999999999999999764
No 180
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.20 E-value=1.2e-06 Score=84.46 Aligned_cols=73 Identities=12% Similarity=0.066 Sum_probs=59.3
Q ss_pred hhhhcccccccccccccccc--------------ccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCc
Q psy9618 302 YIRRMWSVDVPIYNFVTHSR--------------ETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPL 367 (542)
Q Consensus 302 ~~~~g~~v~~P~y~f~~~~r--------------~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (542)
.|++|+.+..|.|++..... ......+.+.+||||||+++|+++.++++.
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~---------------- 131 (187)
T cd02024 68 YWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLF---------------- 131 (187)
T ss_pred HHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhc----------------
Confidence 45566667777777766543 133456789999999999999999998874
Q ss_pred hhhhccCCCCCCceeecccCCcchhhhhhhcccc
Q psy9618 368 PEALALLPETPQIKGLHTAGNRTRVSRVLLRGFK 401 (542)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~rl~rr~~Rd~~ 401 (542)
|++||++++.++++.||+.||..
T Consensus 132 -----------D~~Ifvd~~~d~~~~Rr~~R~~~ 154 (187)
T cd02024 132 -----------DIRYFLRVPYETCKRRREARTGY 154 (187)
T ss_pred -----------CceeEecCCHHHHHHHHHHcCCc
Confidence 99999999999999999999954
No 181
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.19 E-value=1.9e-05 Score=80.47 Aligned_cols=157 Identities=18% Similarity=0.188 Sum_probs=69.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
|.+|.|+|.+||||||+|+.|++.|.-. .+.+++-|++.. ..+. |.+ +-........++....
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~----------~~~~--y~~--~~~Ek~~R~~l~s~v~- 65 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGI----------DRND--YAD--SKKEKEARGSLKSAVE- 65 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-----------TTSS--S----GGGHHHHHHHHHHHHH-
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccccc----------chhh--hhc--hhhhHHHHHHHHHHHH-
Confidence 3589999999999999999999987422 244556444431 1111 211 1122222222222100
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEccccccC--------hhhhccCCEEEEEECCHHHHHHHhhhcchhhhcC
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN--------PQVLELLDMKVFVDTDADVRLARRLKRDILARGR 192 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~--------~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr 192 (542)
..+....+||+|+.+-+.. ......--++||++|+.+.+++|=.+|...+ +
T Consensus 66 -------------------r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~--~ 124 (270)
T PF08433_consen 66 -------------------RALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPE--R 124 (270)
T ss_dssp -------------------HHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S----
T ss_pred -------------------HhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCC--C
Confidence 0112347899999753211 1112222478999999999999987775321 1
Q ss_pred CHHHHHHH-HHhhccchhh-ccccCCCCcccEEEECCCCCHHHHHHHHHHH
Q psy9618 193 DLEGVIKQ-YVNMVKPAFS-TFIAPSMVHADIIVPRGGENCVAIDLIVQHI 241 (542)
Q Consensus 193 ~~~~vl~q-~~~~v~p~y~-~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I 241 (542)
-.+++++. +.++..|.-. +|- ..-+++.... ....++.+.+.|
T Consensus 125 ~~~e~i~~m~~RfE~P~~~nrWD-----~plf~i~~~~-~~~~~~~I~~~l 169 (270)
T PF08433_consen 125 YPEETIDDMIQRFEEPDPKNRWD-----SPLFTIDSSD-EELPLEEIWNAL 169 (270)
T ss_dssp S-HHHHHHHHHH---TTSS-GGG-----S-SEEEE-TT-S---HHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCCCCCcc-----CCeEEEecCC-CCCCHHHHHHHH
Confidence 23344433 3333334321 222 2467777432 344456666555
No 182
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.19 E-value=3.5e-05 Score=75.45 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=47.2
Q ss_pred cCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHH
Q psy9618 164 LLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 164 l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~ 243 (542)
.-|+++||++|+++.++|..+|+.. ..+ .+.....+.+.+...|......... .=++|+.+. + ++.+.+.|.+
T Consensus 127 ~PD~ti~Ldv~~e~al~R~~~r~~~-~~r-~E~~~~~f~~kvr~~Y~~la~~~~~-r~~vIda~~-~---~e~v~~~i~~ 199 (208)
T COG0125 127 KPDLTLYLDVPPEVALERIRKRGEL-RDR-FEKEDDEFLEKVREGYLELAAKFPE-RIIVIDASR-P---LEEVHEEILK 199 (208)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCc-cch-hhhHHHHHHHHHHHHHHHHHhhCCC-eEEEEECCC-C---HHHHHHHHHH
Confidence 3499999999999999999998643 112 1222224555565666555443322 235565554 2 4677777777
Q ss_pred HHHH
Q psy9618 244 QLQA 247 (542)
Q Consensus 244 ~L~~ 247 (542)
.+.+
T Consensus 200 ~l~~ 203 (208)
T COG0125 200 ILKE 203 (208)
T ss_pred HHHH
Confidence 7664
No 183
>PLN02541 uracil phosphoribosyltransferase
Probab=98.18 E-value=1.9e-07 Score=93.30 Aligned_cols=56 Identities=23% Similarity=0.209 Sum_probs=46.7
Q ss_pred hHhhhhhhhhhhHHHHHHHHhh---h-hhhhhhhhHhhhhhHHHHHHHHHhhCCCcchhh
Q psy9618 248 VLLMDATVATGAAAMMAIRILL---D-HDVLLMDATVATGAAAMMAIRILLDHDVPEGYI 303 (542)
Q Consensus 248 k~~~~~~~~t~~~~~~~~~~~~---~-~~~~l~d~~~a~g~~~~~~~~~~~~~~~~~~~~ 303 (542)
++++++++.|..+..+|.|.+. + ..|||+|||+|||||+++|++.|.+||++++++
T Consensus 131 ~i~~~rd~~t~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I 190 (244)
T PLN02541 131 HLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQI 190 (244)
T ss_pred EEEEEEcccccceEEeeccCchhcCCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccE
Confidence 5666777777788888888543 3 359999999999999999999999999988764
No 184
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.17 E-value=2.7e-05 Score=79.10 Aligned_cols=68 Identities=18% Similarity=0.294 Sum_probs=41.0
Q ss_pred EEEEEECCHHHHHHHhh-hcchhh---hcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHH
Q psy9618 167 MKVFVDTDADVRLARRL-KRDILA---RGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIH 242 (542)
Q Consensus 167 l~IfLdad~d~rl~Rrl-~Rd~~~---rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~ 242 (542)
-+|||+|+.++.++|-. .|..+. .+...+++ ++ ..+.++|.++.||+||+++..+.. ++.+.|.
T Consensus 84 ~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I-~~--------Er~~L~~lr~~Ad~vIDTs~l~~~---~Lr~~i~ 151 (284)
T PF03668_consen 84 RILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAI-EK--------ERELLEPLRERADLVIDTSNLSVH---QLRERIR 151 (284)
T ss_pred EEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHH-HH--------HHHHHHHHHHhCCEEEECCCCCHH---HHHHHHH
Confidence 46999999999999962 232222 12223332 21 123456778899999999986655 3344444
Q ss_pred HHHH
Q psy9618 243 SQLQ 246 (542)
Q Consensus 243 ~~L~ 246 (542)
+.+.
T Consensus 152 ~~~~ 155 (284)
T PF03668_consen 152 ERFG 155 (284)
T ss_pred HHhc
Confidence 4443
No 185
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.16 E-value=7.8e-06 Score=75.74 Aligned_cols=37 Identities=41% Similarity=0.488 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhhhc
Q psy9618 45 VIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSFYR 82 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Ddfy~ 82 (542)
+|.|+|.+||||||+|+.|++.+ |.. +..++.|.+.+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~-~~~i~~d~~r~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRP-VYVLDGDNVRH 40 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCC-EEEEcCHHHHH
Confidence 57899999999999999999999 443 33567777654
No 186
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.15 E-value=8.8e-06 Score=87.85 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=34.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
+.|.+|.++|++||||||+|..|++.+|+.+ +|++|.+.+
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~--ii~tD~iR~ 292 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITR--IVSTDAVRE 292 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcE--EeehhHHHH
Confidence 4689999999999999999999999999764 457887643
No 187
>PRK13974 thymidylate kinase; Provisional
Probab=98.12 E-value=2.3e-05 Score=76.84 Aligned_cols=71 Identities=17% Similarity=0.290 Sum_probs=45.3
Q ss_pred CCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHH
Q psy9618 165 LDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQ 244 (542)
Q Consensus 165 ~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~ 244 (542)
.|++||+++|.+++++|+..|.. ...+.....|.+.+.+.|..|... ..-.+|+.++ .++.+.+.|.+.
T Consensus 135 pd~~i~ld~~~~~~~~R~~~R~d----D~~e~~~~~y~~~v~~~y~~y~~~---~~~~~Ida~~----~~eeV~~~I~~~ 203 (212)
T PRK13974 135 PDLTFFLEISVEESIRRRKNRKP----DRIEAEGIEFLERVAEGFALIAEE---RNWKVISADQ----SIETISNEIKET 203 (212)
T ss_pred CCEEEEEeCCHHHHHHHHHhccc----CchhhhhHHHHHHHHHHHHHHHhc---CCEEEEeCCC----CHHHHHHHHHHH
Confidence 58999999999999999877631 123444456777788888766432 1223344332 235666666666
Q ss_pred HH
Q psy9618 245 LQ 246 (542)
Q Consensus 245 L~ 246 (542)
+.
T Consensus 204 l~ 205 (212)
T PRK13974 204 LL 205 (212)
T ss_pred HH
Confidence 55
No 188
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.12 E-value=6.3e-06 Score=79.90 Aligned_cols=45 Identities=29% Similarity=0.456 Sum_probs=33.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchh
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVL 84 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l 84 (542)
..+|.+|.++|++||||||++..+.+.++...++.|+.|.|-..+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 357899999999999999999999999854556678999986543
No 189
>KOG0635|consensus
Probab=98.10 E-value=6.1e-05 Score=69.26 Aligned_cols=43 Identities=33% Similarity=0.276 Sum_probs=34.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCe--EEeecchhhhchh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPW--VTLLSMDSFYRVL 84 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~--v~iIs~Ddfy~~l 84 (542)
+..+|+|+|.|||||||+|-+|.+.|.... ..+++.|+..+-|
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGL 74 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGL 74 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccc
Confidence 347999999999999999999999995432 3567888876644
No 190
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.07 E-value=4e-06 Score=80.10 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=39.0
Q ss_pred cCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHH
Q psy9618 164 LLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHI 241 (542)
Q Consensus 164 l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I 241 (542)
.-|+++||+++++++++|...|+.. .+ .......+...+...|.+... ....=++|+.+. .++.+.+.|
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r~~~--~~-~~~~~~~~~~~~~~~y~~l~~--~~~~~~iid~~~----~~e~v~~~I 186 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKRGEK--DD-EEEEDLEYLRRVREAYLELAK--DPNNWVIIDASR----SIEEVHEQI 186 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHTSST--TT-TTTHHHHHHHHHHHHHHHHHH--TTTTEEEEETTS-----HHHHHHHH
T ss_pred CCCEEEEEecCHHHHHHHHHcCCcc--ch-HHHHHHHHHHHHHHHHHHHHc--CCCCEEEEECCC----CHHHHHhhC
Confidence 4599999999999999999998751 11 111222333344445555443 122334555443 246666654
No 191
>KOG3877|consensus
Probab=98.06 E-value=1.2e-05 Score=80.28 Aligned_cols=42 Identities=31% Similarity=0.392 Sum_probs=35.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
....+|+|.|++|||||++|+.||++||+.+.--+.||+.|-
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyv 110 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYV 110 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceee
Confidence 345799999999999999999999999987665557776664
No 192
>PRK06547 hypothetical protein; Provisional
Probab=98.01 E-value=4.4e-06 Score=79.44 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=57.3
Q ss_pred hccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCC-----
Q psy9618 305 RMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQ----- 379 (542)
Q Consensus 305 ~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 379 (542)
.|++...| |||.++.+. ....++|+++||+||+++++ +.+++++ |
T Consensus 70 ~g~~~~~~-yd~~~~~~~-~~~~l~~~~vVIvEG~~al~-~~~r~~~---------------------------d~~g~v 119 (172)
T PRK06547 70 EGRPGRWR-WDWANNRPG-DWVSVEPGRRLIIEGVGSLT-AANVALA---------------------------SLLGEV 119 (172)
T ss_pred CCCCceec-CCCCCCCCC-CcEEeCCCCeEEEEehhhcc-HHHHHHh---------------------------ccCCCE
Confidence 67888889 999988764 34567889999999999997 4567653 5
Q ss_pred ceeecccCCcchhhhhhhcccccC
Q psy9618 380 IKGLHTAGNRTRVSRVLLRGFKLR 403 (542)
Q Consensus 380 ~~~~~~~~~~~rl~rr~~Rd~~~r 403 (542)
++||++++.++|+.|++.||..++
T Consensus 120 ~~I~ld~~~~vr~~R~~~Rd~~~~ 143 (172)
T PRK06547 120 LTVWLDGPEALRKERALARDPDYA 143 (172)
T ss_pred EEEEEECCHHHHHHHHHhcCchhh
Confidence 899999999999999999996633
No 193
>PRK07667 uridine kinase; Provisional
Probab=98.00 E-value=3.7e-06 Score=81.24 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=58.3
Q ss_pred hhhhccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCce
Q psy9618 302 YIRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQIK 381 (542)
Q Consensus 302 ~~~~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (542)
.|++|+++..|.||+.++.+......+++..|+||||+++ ....++++ .|++
T Consensus 91 ~L~~~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l-~~~~~~~~---------------------------~d~~ 142 (193)
T PRK07667 91 KLQNETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFL-QRKEWRDF---------------------------FHYM 142 (193)
T ss_pred hhcCCCeEEEeeeccccccccccceecCCCCEEEEEehhh-hhhhHHhh---------------------------ceEE
Confidence 3567899999999999988766556678899999999995 44556665 4999
Q ss_pred eecccCCcchhhhhhhcc
Q psy9618 382 GLHTAGNRTRVSRVLLRG 399 (542)
Q Consensus 382 ~~~~~~~~~rl~rr~~Rd 399 (542)
+||+++.++|+.|.+.||
T Consensus 143 v~V~~~~~~~~~R~~~r~ 160 (193)
T PRK07667 143 VYLDCPRETRFLRESEET 160 (193)
T ss_pred EEEECCHHHHHHHHhccc
Confidence 999999999999998765
No 194
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.91 E-value=0.00014 Score=68.16 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=25.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc-CCC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL-NVP 70 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L-g~p 70 (542)
.+++|+|+|-+|+||||+++...+.+ +.+
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~~l~~~~ 32 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALKELVKHK 32 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHHHHhhce
Confidence 47899999999999999999999988 443
No 195
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.88 E-value=5.6e-05 Score=83.59 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=62.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
..+.+|.++|.+||||||+|+.+++..|+.+ ++.|.+-. + -..+..+.+.|..|
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~---vn~D~lg~----------------------~-~~~~~~a~~~L~~G 420 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKH---VNADTLGS----------------------T-QNCLTACERALDQG 420 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeE---ECcHHHHH----------------------H-HHHHHHHHHHHhCC
Confidence 4578999999999999999999999987654 48876521 0 00122223334444
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEccccccC--hhhhcc-----CC-EEEEEECCHHHHHHHhhhcch
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN--PQVLEL-----LD-MKVFVDTDADVRLARRLKRDI 187 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~--~~l~~l-----~D-l~IfLdad~d~rl~Rrl~Rd~ 187 (542)
+. ||+|..+.-.. ..+.++ +. ..+|+++|.+++++|...|..
T Consensus 421 ~s-------------------------VVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 421 KR-------------------------CAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred Cc-------------------------EEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 33 56677654321 112111 12 468899999999999988864
No 196
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.81 E-value=4.5e-05 Score=79.08 Aligned_cols=41 Identities=44% Similarity=0.632 Sum_probs=35.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh--hhchhc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVLN 85 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Dd--fy~~l~ 85 (542)
.+.+|+|+||+||||||+|..|+++++.+ +|++|+ +|+.++
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~---iis~Ds~Qvy~~l~ 45 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGE---IISADSMQVYRGMD 45 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCc---EEeccccceeeccc
Confidence 35799999999999999999999999865 569998 687543
No 197
>PHA03132 thymidine kinase; Provisional
Probab=97.79 E-value=0.00011 Score=81.81 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=26.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
..++|.|.|..||||||+++.|++.+|..
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~ 284 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDN 284 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 36899999999999999999999999544
No 198
>PRK06696 uridine kinase; Validated
Probab=97.75 E-value=8.8e-06 Score=80.37 Aligned_cols=72 Identities=11% Similarity=0.014 Sum_probs=60.3
Q ss_pred ccccccccccccccccc-ccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCceeecc
Q psy9618 307 WSVDVPIYNFVTHSRET-RTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHT 385 (542)
Q Consensus 307 ~~v~~P~y~f~~~~r~~-~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (542)
..++.|.|||.++.+.. ....++++.++|+||++++. +.++.+ .|+++|++
T Consensus 103 ~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~-~~~~~~---------------------------~d~~i~v~ 154 (223)
T PRK06696 103 RQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLR-PELRDL---------------------------WDYKIFLD 154 (223)
T ss_pred eeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhh-hhHHhh---------------------------CCEEEEEE
Confidence 36888999999998753 56667889999999999864 455554 38999999
Q ss_pred cCCcchhhhhhhcccccCcch
Q psy9618 386 AGNRTRVSRVLLRGFKLRPTL 406 (542)
Q Consensus 386 ~~~~~rl~rr~~Rd~~~r~~~ 406 (542)
++.++++.|++.||..+||+.
T Consensus 155 ~~~e~~~~R~~~Rd~~~~g~~ 175 (223)
T PRK06696 155 TDFEVSRRRGAKRDTEAFGSY 175 (223)
T ss_pred CCHHHHHHHHHHhhhhhhCCc
Confidence 999999999999999999963
No 199
>PHA00729 NTP-binding motif containing protein
Probab=97.74 E-value=0.00017 Score=71.38 Aligned_cols=109 Identities=19% Similarity=0.140 Sum_probs=66.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
...|+|+|++|+||||+|.+|+++++.... .++.|.-.+ ..... .--++.+.+.+.|+...++.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~-~l~~~~~~~--------d~~~~------~~fid~~~Ll~~L~~a~~~~- 80 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFWKLN-NLSTKDDAW--------QYVQN------SYFFELPDALEKIQDAIDND- 80 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhhcc-cccchhhHH--------hcCCc------EEEEEHHHHHHHHHHHHhcC-
Confidence 457999999999999999999999863211 112221100 00011 12345555666665432211
Q ss_pred eccceechhhchhcccccccCCCcEEEEEccccc----------------cChhhhccCCEEEEEECCHHHHHHHhhhcc
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAF----------------HNPQVLELLDMKVFVDTDADVRLARRLKRD 186 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~----------------~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd 186 (542)
...+++|+|++.+. -.+.++..+++.++..++.+.+.+++..|+
T Consensus 81 --------------------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 81 --------------------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred --------------------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCC
Confidence 12356778873111 112345578999999999999999998886
Q ss_pred h
Q psy9618 187 I 187 (542)
Q Consensus 187 ~ 187 (542)
.
T Consensus 141 ~ 141 (226)
T PHA00729 141 W 141 (226)
T ss_pred C
Confidence 5
No 200
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.71 E-value=9.2e-06 Score=80.55 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=77.5
Q ss_pred hhhhcc-cccccccccccccccccccccc-CceEEEEeccccccCh----HHHhhhcccccccccccCCCCchhhhccCC
Q psy9618 302 YIRRMW-SVDVPIYNFVTHSRETRTKPMY-GANVIIFEGILAFHNP----QVLERGFKLRPTLAQSYAGQPLPEALALLP 375 (542)
Q Consensus 302 ~~~~g~-~v~~P~y~f~~~~r~~~~~~~~-~~~vii~EGi~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (542)
.|+.|+ .+.+|.||+..+.+..+...+. +..|||+||++++.+. .++.+
T Consensus 106 ~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~------------------------- 160 (229)
T PRK09270 106 RLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGL------------------------- 160 (229)
T ss_pred HHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhh-------------------------
Confidence 455565 8999999999988766655664 6789999999998864 33333
Q ss_pred CCCCceeecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHH
Q psy9618 376 ETPQIKGLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRL 455 (542)
Q Consensus 376 ~~~~~~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~l 455 (542)
.|+.+|++++.++++.|.+.|+. ++|.+.+. ...++....-+..+|+.+..+.|++
T Consensus 161 --~D~vi~v~~~~~~~~~R~~~R~~-~~g~s~~~---------------------~~~~~~~~~~~~~~~i~~~~~~ad~ 216 (229)
T PRK09270 161 --FDFTIFLDAPAEVLRERLVARKL-AGGLSPEA---------------------AEAFVLRNDGPNARLVLETSRPADL 216 (229)
T ss_pred --CCEEEEEECCHHHHHHHHHHHHH-hcCCCHHH---------------------HHHHHHhcChHHHHHHHhcCCCCCE
Confidence 38999999999999988888874 57776554 2334433333344677776666666
Q ss_pred HHHH
Q psy9618 456 VIEF 459 (542)
Q Consensus 456 lie~ 459 (542)
+|+.
T Consensus 217 vI~n 220 (229)
T PRK09270 217 VLEM 220 (229)
T ss_pred EEEe
Confidence 6554
No 201
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.65 E-value=0.00017 Score=71.37 Aligned_cols=154 Identities=19% Similarity=0.257 Sum_probs=75.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeE--EeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWV--TLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLK 118 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v--~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk 118 (542)
..+.+|+..|.||.|||++|+.|++.|++-.+ .+.+.++|-+..... .....|-+|..-+-..+.+.+....
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~------~~~~~ff~p~n~~~~~~R~~~a~~~ 83 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGA------PQDAEFFDPDNEEAKKLREQIAKEA 83 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-------S-GGGGSTT-HHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccccc------ccccccCCCCChHHHHHHHHHHHHH
Confidence 45789999999999999999999999975443 456777665532111 1122333343333333333222110
Q ss_pred cCCeeccceechhhchhcccccccCCCcEEEEEccccccC--h----hhhccCCEEEEEE--CCHHHHHHHhhhcc----
Q psy9618 119 EGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN--P----QVLELLDMKVFVD--TDADVRLARRLKRD---- 186 (542)
Q Consensus 119 ~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~--~----~l~~l~Dl~IfLd--ad~d~rl~Rrl~Rd---- 186 (542)
.. ....|....+..|.|+||...-.. . .+.+.---++||+ |+.+..+++=+++.
T Consensus 84 -------------l~-dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~s 149 (222)
T PF01591_consen 84 -------------LE-DLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNS 149 (222)
T ss_dssp -------------HH-HHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTS
T ss_pred -------------HH-HHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCC
Confidence 00 011222334668999999754321 1 1222222457775 45555565544332
Q ss_pred hhhhcCCHHHHHHHHHhhccchhhccccC
Q psy9618 187 ILARGRDLEGVIKQYVNMVKPAFSTFIAP 215 (542)
Q Consensus 187 ~~~rgr~~~~vl~q~~~~v~p~y~~~i~p 215 (542)
-...|.+.+..++.|.+++. .|+...+|
T Consensus 150 pDY~~~~~e~A~~Df~~RI~-~Ye~~YEp 177 (222)
T PF01591_consen 150 PDYKGMDPEEAIEDFKKRIE-HYEKVYEP 177 (222)
T ss_dssp GGGTTS-HHHHHHHHHHHHH-HHHTT---
T ss_pred cccccCCHHHHHHHHHHHHH-hhcccccc
Confidence 23367888888888888763 44444444
No 202
>PLN02165 adenylate isopentenyltransferase
Probab=97.65 E-value=0.00012 Score=76.35 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=30.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
..+|+|.|++||||||+|..|++.++.. +|++|++
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~e---IIsaDs~ 77 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSE---IINSDKM 77 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCc---eecCChh
Confidence 3599999999999999999999999865 4588876
No 203
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=97.61 E-value=0.00069 Score=67.71 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=44.1
Q ss_pred EEEEEECCHHHHHHHhh-hcchh---hhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHH
Q psy9618 167 MKVFVDTDADVRLARRL-KRDIL---ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIH 242 (542)
Q Consensus 167 l~IfLdad~d~rl~Rrl-~Rd~~---~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~ 242 (542)
-++|++|+.++.+.|-. .|..+ ..|+ .++.+. ...++..|.+..||+||+++..+.. ++-++|.
T Consensus 85 ~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~----l~~~I~-----~ERelL~pLk~~A~~vIDTs~ls~~---~Lr~~i~ 152 (286)
T COG1660 85 RVLFLEADDETLVRRYSETRRSHPLSEDGL----LLEAIA-----KERELLAPLREIADLVIDTSELSVH---ELRERIR 152 (286)
T ss_pred eEEEEECchhHHHHHHhhhhhcCCCCccCc----HHHHHH-----HHHHHHHHHHHHhhhEeecccCCHH---HHHHHHH
Confidence 35899999999999952 22221 1232 222221 1234668889999999999876655 5566777
Q ss_pred HHHHH
Q psy9618 243 SQLQA 247 (542)
Q Consensus 243 ~~L~~ 247 (542)
+.+..
T Consensus 153 ~~f~~ 157 (286)
T COG1660 153 TRFLG 157 (286)
T ss_pred HHHcc
Confidence 76663
No 204
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.57 E-value=3.8e-05 Score=77.30 Aligned_cols=79 Identities=14% Similarity=0.113 Sum_probs=59.6
Q ss_pred hhhccc-cccccccccccccccc-cccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCc
Q psy9618 303 IRRMWS-VDVPIYNFVTHSRETR-TKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQI 380 (542)
Q Consensus 303 ~~~g~~-v~~P~y~f~~~~r~~~-~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (542)
++.|++ |.+|+||+.++-..+. ...+...+|+|+||+..|.+.. ..+ .++.+.||
T Consensus 157 vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~-p~~----------------------~~sdffDf 213 (283)
T COG1072 157 VKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGE-PWL----------------------FLSDFFDF 213 (283)
T ss_pred HhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCC-ccc----------------------cccccceE
Confidence 454666 9999999999988644 5556888999999999999865 221 15777899
Q ss_pred eeecccCCcchhhhhhhcccccCc
Q psy9618 381 KGLHTAGNRTRVSRVLLRGFKLRP 404 (542)
Q Consensus 381 ~~~~~~~~~~rl~rr~~Rd~~~r~ 404 (542)
+||||++.++--.|-+.|=+.+|-
T Consensus 214 SIyvDa~~~~le~wyi~Rfl~~g~ 237 (283)
T COG1072 214 SIYVDADEELLEERYIERFLKFGL 237 (283)
T ss_pred EEEecCCHHHHHHHHHHHHHhccc
Confidence 999999998855555555555443
No 205
>PLN02772 guanylate kinase
Probab=97.54 E-value=0.0007 Score=72.05 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..+|.|+|||||||||+.+.|.+.+
T Consensus 135 ~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 135 EKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CcEEEEECCCCCCHHHHHHHHhhhc
Confidence 4699999999999999999998876
No 206
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.0018 Score=60.53 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=51.5
Q ss_pred CCCcEEEEEccccccChhhhccC-C-EEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcc
Q psy9618 143 YGANVIIFEGILAFHNPQVLELL-D-MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHA 220 (542)
Q Consensus 143 ~~~~vVIvEGi~~~~~~~l~~l~-D-l~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~A 220 (542)
....++|+.|--+.- +..+..+ + ++|.+++++++...|+..|+.. +.+++........ .+ .....
T Consensus 92 ~~G~vvl~NgSRa~L-p~arrry~~Llvv~ita~p~VLaqRL~~RGRE----s~eeI~aRL~R~a-----~~---~~~~~ 158 (192)
T COG3709 92 AAGDVVLVNGSRAVL-PQARRRYPQLLVVCITASPEVLAQRLAERGRE----SREEILARLARAA-----RY---TAGPG 158 (192)
T ss_pred hCCCEEEEeccHhhh-HHHHHhhhcceeEEEecCHHHHHHHHHHhccC----CHHHHHHHHHhhc-----cc---ccCCC
Confidence 456788999964432 3344333 4 4688999999999999887642 3445544443311 01 11234
Q ss_pred c-EEEECCCCCHHHHHHHHHHHH
Q psy9618 221 D-IIVPRGGENCVAIDLIVQHIH 242 (542)
Q Consensus 221 D-iVI~~~~~n~~ai~~iv~~I~ 242 (542)
| ..|+|+|+-..+.+.++.++.
T Consensus 159 dv~~idNsG~l~~ag~~ll~~l~ 181 (192)
T COG3709 159 DVTTIDNSGELEDAGERLLALLH 181 (192)
T ss_pred CeEEEcCCCcHHHHHHHHHHHHH
Confidence 4 457778866666666555554
No 207
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.50 E-value=0.00026 Score=76.11 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=31.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
+..|+|+|++||||||++++|++.+|..++.-..-+.+
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~ 256 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYV 256 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHH
Confidence 47999999999999999999999999887654444433
No 208
>COG4639 Predicted kinase [General function prediction only]
Probab=97.46 E-value=0.00062 Score=63.18 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=28.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVL 84 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l 84 (542)
+.+|++.|.|||||||+|+.. + +-..+|++|+|-..+
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n---~--~~~~~lsld~~r~~l 38 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN---F--LQNYVLSLDDLRLLL 38 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh---C--CCcceecHHHHHHHh
Confidence 368999999999999999853 2 223467999997543
No 209
>PRK06761 hypothetical protein; Provisional
Probab=97.44 E-value=0.0018 Score=66.40 Aligned_cols=29 Identities=28% Similarity=0.194 Sum_probs=26.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
.+|.|+|++||||||+++.|++.|+..++
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~ 32 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGI 32 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCce
Confidence 58999999999999999999999975544
No 210
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.42 E-value=0.00057 Score=70.13 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=33.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL----NVPWVTLLSMDSFY 81 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L----g~p~v~iIs~Ddfy 81 (542)
++.+|+++|++||||||++..|+..+ |-..|.+|++|.|.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 46899999999999999999999877 32457788999865
No 211
>COG0645 Predicted kinase [General function prediction only]
Probab=97.38 E-value=0.00061 Score=64.11 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=32.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLN 85 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~ 85 (542)
.++.+.|.+||||||+|+.|++.+|..++ .+|..-+.|.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~l---rsD~irk~L~ 40 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRL---RSDVIRKRLF 40 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEE---ehHHHHHHhc
Confidence 57889999999999999999999997655 7888776543
No 212
>KOG4235|consensus
Probab=97.34 E-value=0.0011 Score=63.60 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=32.3
Q ss_pred cCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhc
Q psy9618 142 MYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARG 191 (542)
Q Consensus 142 ~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rg 191 (542)
+......|++-++-+-.....--.|..|||.+++++|++|+..|...+++
T Consensus 131 m~e~e~~iy~eW~d~i~~~~~v~~dgiIYLrasPetc~~Ri~~R~R~EE~ 180 (244)
T KOG4235|consen 131 MNEVEYVIYQEWFDWILRSMDVSLDGIIYLRASPETCYKRIYLRAREEEK 180 (244)
T ss_pred cccchhhhHHHHHHHHHhccccccceEEEeecChHHHHHHHHHHhhhhhc
Confidence 34445556555543321112223589999999999999999998765543
No 213
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=97.33 E-value=0.0017 Score=60.72 Aligned_cols=88 Identities=25% Similarity=0.375 Sum_probs=60.5
Q ss_pred cEEEEEcc----ccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhc--CCHHHHHHHHHhhccchhhccccCCCCc
Q psy9618 146 NVIIFEGI----LAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARG--RDLEGVIKQYVNMVKPAFSTFIAPSMVH 219 (542)
Q Consensus 146 ~vVIvEGi----~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rg--r~~~~vl~q~~~~v~p~y~~~i~p~~~~ 219 (542)
.-+|+||- .+|++ .++||||+|+.++|.+||.+... ..| .+.++++++..++.+.+..+-+.|.+..
T Consensus 63 ~~vV~eGRDigTvVfPd------A~~KifLtAs~e~RA~RR~~e~~-~~g~~~~~e~v~~~i~~RD~~D~~R~~aPL~~a 135 (157)
T PF02224_consen 63 GGVVMEGRDIGTVVFPD------ADLKIFLTASPEVRARRRYKELQ-EKGKKVSYEEVLEDIKERDERDSNREVAPLKKA 135 (157)
T ss_dssp SCEEEEESSCCCCCCTT-------SEEEEEE--HHHHHHHHHHHHH-HTT----HHHHHHHHHHHHHHHHCTSSS-SS--
T ss_pred CCeEEecCCCceEEcCC------CCEEEEEECCHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHhhChhhccCccCCCccC
Confidence 34789995 34443 49999999999999999987543 333 3688999999999999999999999988
Q ss_pred ccEEEECCCCCHHHHHHHHHHHH
Q psy9618 220 ADIIVPRGGENCVAIDLIVQHIH 242 (542)
Q Consensus 220 ADiVI~~~~~n~~ai~~iv~~I~ 242 (542)
.|.++..+. ...+++++++|.
T Consensus 136 ~DAi~IDts--~lti~evv~~il 156 (157)
T PF02224_consen 136 EDAIVIDTS--NLTIEEVVEKIL 156 (157)
T ss_dssp TTSEEEETT--TS-HHHHHHHHH
T ss_pred CCeEEEECC--CCCHHHHHHHHh
Confidence 886655443 235578888774
No 214
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.31 E-value=0.0063 Score=62.23 Aligned_cols=160 Identities=22% Similarity=0.269 Sum_probs=83.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhhhc-----hhcHHHHHHHhccccCCCCCccccHHhHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYR-----VLNEEQHKKAAQNEYNFDHPDAFDFELLLPT 113 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddfy~-----~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~ 113 (542)
.++.+|||+|++|+||||+..+|..+|-- ..|.+|.-|.--. .|.+.-+-..... +|+.|
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~-----~~~vF-------- 115 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAV-----DPGVF-------- 115 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhcc-----CCCeE--------
Confidence 34689999999999999999999999932 1355555552211 0111111111111 11111
Q ss_pred HHHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccC-hhhhccCCEEEEEECCHHHHHHHhhhcchhhhcC
Q psy9618 114 LQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN-PQVLELLDMKVFVDTDADVRLARRLKRDILARGR 192 (542)
Q Consensus 114 L~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~-~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr 192 (542)
++.+-.... .--.+..+.+. -......|.++||+|-..+-.. .++.+..|..++|..| .-|.
T Consensus 116 iRs~~srG~--lGGlS~at~~~-i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~p--------------g~GD 178 (323)
T COG1703 116 IRSSPSRGT--LGGLSRATREA-IKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIP--------------GAGD 178 (323)
T ss_pred EeecCCCcc--chhhhHHHHHH-HHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecC--------------CCCc
Confidence 000000000 00000000000 0112347889999998766533 4577899999999876 2355
Q ss_pred CHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 193 DLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 193 ~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
+.+.+..-. +..||+++.|-.+.. .-+....++...|.
T Consensus 179 ~~Q~iK~Gi---------------mEiaDi~vINKaD~~-~A~~a~r~l~~al~ 216 (323)
T COG1703 179 DLQGIKAGI---------------MEIADIIVINKADRK-GAEKAARELRSALD 216 (323)
T ss_pred HHHHHHhhh---------------hhhhheeeEeccChh-hHHHHHHHHHHHHH
Confidence 555544444 335788887765422 22344444544444
No 215
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.28 E-value=4.7e-05 Score=81.23 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=60.3
Q ss_pred hhhccccccccccccccc----cccc---cccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCC
Q psy9618 303 IRRMWSVDVPIYNFVTHS----RETR---TKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLP 375 (542)
Q Consensus 303 ~~~g~~v~~P~y~f~~~~----r~~~---~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (542)
+++|++|++|+|||.+|+ |.++ +..+.|.+||||||++.+..+.-.+..... -.+..+-.+-+.+|..+|.
T Consensus 296 lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~--D~~l~~VN~~L~~Y~~~w~ 373 (460)
T PLN03046 296 TKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAV--DPQLEVVNKNLEAYYDAWD 373 (460)
T ss_pred hhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhcc--ChhHHHHHHHHHHHHHHHH
Confidence 468999999999999988 5433 334589999999999988865443221000 0000111122345555565
Q ss_pred CCCCceeecccC-CcchhhhhhhcccccC
Q psy9618 376 ETPQIKGLHTAG-NRTRVSRVLLRGFKLR 403 (542)
Q Consensus 376 ~~~~~~~~~~~~-~~~rl~rr~~Rd~~~r 403 (542)
...|.=+++.++ -+.-..||+....+.|
T Consensus 374 ~~~D~li~L~a~d~~~Vy~WRlqQE~kLr 402 (460)
T PLN03046 374 KFIDAWVVIKIQDPSCVYQWRLQAEIAMR 402 (460)
T ss_pred HhhceeEEeeCCChhHHHHHHHHHHHHHH
Confidence 555544444433 3667788888776655
No 216
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=97.24 E-value=2.8e-05 Score=76.20 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=30.1
Q ss_pred HhhhhhhhhhhhHhhhhhHHHHHHHHHhhCCCc
Q psy9618 267 ILLDHDVLLMDATVATGAAAMMAIRILLDHDVP 299 (542)
Q Consensus 267 ~~~~~~~~l~d~~~a~g~~~~~~~~~~~~~~~~ 299 (542)
.+.+++|||+|||+|||+|+++|++.|+++|++
T Consensus 119 ~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~ 151 (207)
T TIGR01091 119 DIDERTVIVLDPMLATGGTMIAALDLLKKRGAK 151 (207)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHHHHcCCC
Confidence 456778999999999999999999999999975
No 217
>PLN02840 tRNA dimethylallyltransferase
Probab=97.14 E-value=0.00052 Score=73.79 Aligned_cols=43 Identities=35% Similarity=0.487 Sum_probs=34.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh--hhchh
Q psy9618 39 EQVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVL 84 (542)
Q Consensus 39 ~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Dd--fy~~l 84 (542)
+.....+|+|+||+||||||+|..|+++++.+ +|++|+ +|+.+
T Consensus 17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~---iis~Ds~qvYr~~ 61 (421)
T PLN02840 17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGE---IISADSVQVYRGL 61 (421)
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHCCCC---eEeccccceecce
Confidence 34456799999999999999999999999876 347886 46643
No 218
>KOG3062|consensus
Probab=97.10 E-value=0.0044 Score=60.82 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=68.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchhhhchhcHHHHHHHhccccCCCCCccccH----HhHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNV---PWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDF----ELLLPTLQ 115 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~---p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~----~lL~~~L~ 115 (542)
|.+|.|||-++|||||.|+.|.+.|.. +..+.|+-|.- ..++++..+-. +.+...|.
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----------------lg~~~ns~y~~s~~EK~lRg~L~ 64 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----------------LGIEKNSNYGDSQAEKALRGKLR 64 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh----------------cCCCCcccccccHHHHHHHHHHH
Confidence 457899999999999999999999842 22333332222 12222222211 12222222
Q ss_pred HhHcCCeeccceechhhchhcccccccCCCcEEEEEcccc--------ccChhhhccCCEEEEEECCHHHHHHHhhhcch
Q psy9618 116 RLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILA--------FHNPQVLELLDMKVFVDTDADVRLARRLKRDI 187 (542)
Q Consensus 116 ~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~--------~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~ 187 (542)
.- -...++..++||+|...- ++.........++||..+|.+.+.+.=..|..
T Consensus 65 S~--------------------v~R~Lsk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~ 124 (281)
T KOG3062|consen 65 SA--------------------VDRSLSKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSERED 124 (281)
T ss_pred HH--------------------HHhhcccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCC
Confidence 11 112345668899998521 12222223345889999999999988655532
Q ss_pred h-hhcCCHHHHHHHHHh
Q psy9618 188 L-ARGRDLEGVIKQYVN 203 (542)
Q Consensus 188 ~-~rgr~~~~vl~q~~~ 203 (542)
- +.|.+ ++++++...
T Consensus 125 p~e~gy~-~e~le~L~~ 140 (281)
T KOG3062|consen 125 PGEDGYD-DELLEALVQ 140 (281)
T ss_pred CCCCCCC-HHHHHHHHH
Confidence 1 12333 445554433
No 219
>KOG0744|consensus
Probab=97.03 E-value=0.0046 Score=63.77 Aligned_cols=34 Identities=24% Similarity=0.522 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
++|.+.||+|.||||+|++||++|.+. ..|.||+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR-----~~~~y~~ 211 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIR-----TNDRYYK 211 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheee-----ecCcccc
Confidence 799999999999999999999999765 2366665
No 220
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.00 E-value=0.00076 Score=58.88 Aligned_cols=38 Identities=34% Similarity=0.398 Sum_probs=31.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhh
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFY 81 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy 81 (542)
..+.|.|++||||||+++.|+..++.. .+..++++...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 578999999999999999999999876 36666666554
No 221
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.97 E-value=0.00079 Score=59.53 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhh
Q psy9618 46 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 81 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy 81 (542)
|.|.|++|+||||+++.+++.++.+.+ .+++..+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~-~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFI-EIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEE-EEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccc-cccccccc
Confidence 679999999999999999999997754 34554443
No 222
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.94 E-value=0.00058 Score=70.11 Aligned_cols=38 Identities=37% Similarity=0.613 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh--hhchhc
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVLN 85 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Dd--fy~~l~ 85 (542)
+|+|+|++|||||++|..|++.++.. +|++|+ +|+.++
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~---iis~Ds~qvY~~l~ 40 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAE---IISVDSMQIYKGMD 40 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCc---EEEechhheeeecc
Confidence 58999999999999999999999865 468887 687543
No 223
>PLN02748 tRNA dimethylallyltransferase
Probab=96.89 E-value=0.00085 Score=73.23 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=34.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh--hhchh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVL 84 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Dd--fy~~l 84 (542)
.++.+|+|+|++||||||+|..|+++++.+ +|++|+ +|+.+
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~e---ii~~DsmQVYrgL 62 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVE---IINADSMQVYSGL 62 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCee---EEcCchheeeCCc
Confidence 345699999999999999999999999854 669996 68854
No 224
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.88 E-value=0.001 Score=68.77 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=33.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh--hchh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--YRVL 84 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf--y~~l 84 (542)
+.+.+|.|+||+|||||.+|-.||++.| .+||+|++ |+.+
T Consensus 2 ~~~~ii~I~GpTasGKS~LAl~LA~~~~----eIIsaDS~QvYr~l 43 (300)
T PRK14729 2 KENKIVFIFGPTAVGKSNILFHFPKGKA----EIINVDSIQVYKEF 43 (300)
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCC----cEEeccHHHHHCCC
Confidence 3456999999999999999999999943 46799966 7754
No 225
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.87 E-value=0.00074 Score=63.03 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
.|+|+|++|+||||+++.|+++ |.+++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 3899999999999999999999 87654
No 226
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=96.86 E-value=0.0035 Score=71.88 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=27.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
..+|.+.|.+|+||||+|+.|++.|++.++
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~ 244 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGL 244 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCC
Confidence 579999999999999999999999987655
No 227
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.81 E-value=0.0015 Score=63.51 Aligned_cols=39 Identities=36% Similarity=0.512 Sum_probs=31.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFY 81 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg--~p~v~iIs~Ddfy 81 (542)
|.+|++.||+|+||||.+.+||.++. -..+.++++|.|.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 68999999999999999999998884 2346678888775
No 228
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.78 E-value=0.0022 Score=60.96 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
++|.|+|++||||||+|..+++.++.+.+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~ 30 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVL 30 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence 47999999999999999999999886654
No 229
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.77 E-value=0.0013 Score=62.56 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
.+.+|+|+|++||||||+++.|...|..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999998853
No 230
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.76 E-value=0.0011 Score=60.44 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
+|+|+|+|||||||+++.|++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 47899999999999999999987543
No 231
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.75 E-value=0.0018 Score=59.58 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=25.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL---NVPWVTLLSM 77 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~ 77 (542)
.+|+|+|+++|||||+++.|...| |+...++.++
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 379999999999999999999988 4443334444
No 232
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.0064 Score=65.15 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=33.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC------CeEEeecchhhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV------PWVTLLSMDSFY 81 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~------p~v~iIs~Ddfy 81 (542)
++.+|++.|++|+||||.+..||..+.. ..|.++++|.|.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 4689999999999999999999987742 357778998773
No 233
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.0017 Score=60.69 Aligned_cols=29 Identities=38% Similarity=0.384 Sum_probs=25.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
.++-|+|+|++|+||||++..+++.|.-.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 46899999999999999999999998543
No 234
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=96.65 E-value=0.00017 Score=70.78 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=28.9
Q ss_pred HhhhhhhhhhhhHhhhhhHHHHHHHHHhhCCC
Q psy9618 267 ILLDHDVLLMDATVATGAAAMMAIRILLDHDV 298 (542)
Q Consensus 267 ~~~~~~~~l~d~~~a~g~~~~~~~~~~~~~~~ 298 (542)
.+.++.|||+|||++||+|+++|++.|.+||.
T Consensus 121 ~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~ 152 (209)
T PRK00129 121 DIDERTVIVVDPMLATGGSAIAAIDLLKKRGA 152 (209)
T ss_pred cCCCCEEEEECCcccchHHHHHHHHHHHHcCC
Confidence 35678899999999999999999999999983
No 235
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.65 E-value=0.002 Score=58.74 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
..+|++.|..||||||+++.+++.||..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3589999999999999999999999864
No 236
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.0055 Score=66.00 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=31.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchhhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV---PWVTLLSMDSFY 81 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~---p~v~iIs~Ddfy 81 (542)
++.+|+++|++||||||++..|+..+.. ..+.++++|.|.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 3679999999999999999999976521 246677887753
No 237
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=96.59 E-value=0.0091 Score=55.66 Aligned_cols=175 Identities=23% Similarity=0.250 Sum_probs=94.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
.+..||.+-|.+-||||++|.+|..-+.-||. -|-+|.|...+.+++...+.. |.|+.-..-|. +.-
T Consensus 21 ~~griVlLNG~~saGKSSiA~A~Q~~~a~pwm-higiD~f~e~lpp~~~d~a~g--~~~~~~v~~dg----------~~~ 87 (205)
T COG3896 21 PEGRIVLLNGGSSAGKSSIALAFQDLAAEPWM-HIGIDLFWEALPPEQLDLARG--YTWDSAVEADG----------LEW 87 (205)
T ss_pred CCceEEEecCCCccchhHHHHHHHHHhhcchh-hhhHHHHHHhCCHHhhccccc--cccccccccCC----------cee
Confidence 34579999999999999999999999888887 457899987776666543322 33322111000 000
Q ss_pred Cee-ccceechhhchhcc-cccccCCCcEEEEEccccc----c-ChhhhccCCE-EEEEECCHHHHHHHhhhcchhhhcC
Q psy9618 121 KKV-DVPIYNFVTHSRET-RTKPMYGANVIIFEGILAF----H-NPQVLELLDM-KVFVDTDADVRLARRLKRDILARGR 192 (542)
Q Consensus 121 ~~v-~~P~yd~~~~~~~~-~~~~~~~~~vVIvEGi~~~----~-~~~l~~l~Dl-~IfLdad~d~rl~Rrl~Rd~~~rgr 192 (542)
-.+ .-|+|+...|.+-. -........-+|.|...-- . -.++...|++ .|-|.||.|+..+|..+|.-..-|
T Consensus 88 v~v~~gpi~e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~dR~pG- 166 (205)
T COG3896 88 VTVHPGPILELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRGDRHPG- 166 (205)
T ss_pred eEeechhHHHHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcCCcCcc-
Confidence 000 12445544444321 1111222233455543211 0 1233444554 577999999999998887533322
Q ss_pred CHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHH
Q psy9618 193 DLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQL 245 (542)
Q Consensus 193 ~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L 245 (542)
....+.+.++. -...|+-++++.... .+....|++.+
T Consensus 167 ----~~rg~~r~vHa---------~~~YDlevDTS~~tp---~EcAr~i~~r~ 203 (205)
T COG3896 167 ----WNRGSARAVHA---------DAEYDLEVDTSATTP---HECAREIHERY 203 (205)
T ss_pred ----hhhhhHHHhcC---------CcceeeeecccCCCH---HHHHHHHHHHh
Confidence 22222332321 123477777776444 35566665543
No 238
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.58 E-value=0.0023 Score=67.17 Aligned_cols=41 Identities=27% Similarity=0.273 Sum_probs=32.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhh
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSF 80 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddf 80 (542)
.+++++|||+|++||||||++..|+..+.. ..+.+|+.|.-
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 95 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 356899999999999999999999888842 23667777753
No 239
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.56 E-value=0.0091 Score=56.67 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
++.|+|++|||||++|..++...+.+.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~ 28 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVT 28 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 4789999999999999999988765544
No 240
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.55 E-value=0.0036 Score=67.73 Aligned_cols=49 Identities=31% Similarity=0.302 Sum_probs=38.0
Q ss_pred CCCCCCccCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhhh
Q psy9618 29 GRPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSFY 81 (542)
Q Consensus 29 ~~ppw~~~~~~~~~~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Ddfy 81 (542)
..+||... ...|.+|+++|++||||||.+..||..| |. .+.++++|.|.
T Consensus 89 ~~~~~~~~---~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~D~~R 140 (429)
T TIGR01425 89 GVEAFTPK---KGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCADTFR 140 (429)
T ss_pred CCcccccc---CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcCcccc
Confidence 45677532 2347899999999999999999999887 43 46678888774
No 241
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=96.49 E-value=0.041 Score=52.41 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
||+|+|-.+|||-|+|..|.+.|+..
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~ 26 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGAD 26 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccc
Confidence 68999999999999999999999753
No 242
>KOG4238|consensus
Probab=96.48 E-value=0.0073 Score=62.71 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=31.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhhhch
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSFYRV 83 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Ddfy~~ 83 (542)
...|.++|.||+||||++-+|.+.| |+|+. .++.|+..+.
T Consensus 50 gctvw~tglsgagkttis~ale~~l~~~gipcy-~ldgdnirhg 92 (627)
T KOG4238|consen 50 GCTVWLTGLSGAGKTTISFALEEYLVSHGIPCY-SLDGDNIRHG 92 (627)
T ss_pred ceeEEeeccCCCCcceeehHHHHHHHhcCCccc-ccCcchhhhh
Confidence 3689999999999999999998877 56643 4677777653
No 243
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.0074 Score=66.70 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=31.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchhhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNV----PWVTLLSMDSFY 81 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~----p~v~iIs~Ddfy 81 (542)
..+|+|+|++|+||||++..|+..+-. ..+.++++|.|.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 579999999999999999999986522 346678998764
No 244
>PRK09087 hypothetical protein; Validated
Probab=96.46 E-value=0.016 Score=57.60 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=27.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
..+.|.|++|||||++++.+++..+..++ +.++|
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i---~~~~~ 78 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI---HPNEI 78 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe---cHHHc
Confidence 35799999999999999999998876544 55544
No 245
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.44 E-value=0.0037 Score=62.90 Aligned_cols=38 Identities=34% Similarity=0.568 Sum_probs=27.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDS 79 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Dd 79 (542)
+.++|||+|++|+||||+..+|.+.|-. ..|-+|..|.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDP 67 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDP 67 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-G
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECC
Confidence 4689999999999999999999998832 2455666663
No 246
>KOG3078|consensus
Probab=96.44 E-value=0.005 Score=61.11 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=33.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
++.-..+.|++||||+|+|..|++.+++.+ |++.++.+
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~h---l~tGdllr 51 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIH---ISTGDLLR 51 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCcc---chhHHHHH
Confidence 357888999999999999999999999776 48888876
No 247
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.40 E-value=0.0029 Score=66.77 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=26.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
....+++++||+||||||+|++|++.|+.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34689999999999999999999999974
No 248
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.37 E-value=0.015 Score=56.12 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=29.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCe-EEeecchhhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPW-VTLLSMDSFY 81 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~-v~iIs~Ddfy 81 (542)
++.|+|.|++|||||++..++.+.|.-.+ +.+|--|-++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t 52 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT 52 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec
Confidence 38999999999999999999999985332 3344555444
No 249
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.011 Score=62.92 Aligned_cols=40 Identities=30% Similarity=0.388 Sum_probs=31.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL----NVPWVTLLSMDSFY 81 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L----g~p~v~iIs~Ddfy 81 (542)
+..+|++.||+|+||||++.+|+..+ |...+.++.+|.|.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 35699999999999999999999864 33456677877773
No 250
>KOG1384|consensus
Probab=96.34 E-value=0.016 Score=59.89 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=32.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh--hch
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--YRV 83 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf--y~~ 83 (542)
-.+|+|.|++|||||-||--||.+|+.. +|+.|.. |+.
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~rf~~E---IINsDkmQvYkG 46 (348)
T KOG1384|consen 7 DKVVVIMGATGAGKSRLAVDLATRFPGE---IINSDKMQVYKG 46 (348)
T ss_pred ceEEEEecCCCCChhhhHHHHHHhCCce---eecccceeeecC
Confidence 4799999999999999999999999855 4588854 663
No 251
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.31 E-value=0.0049 Score=59.99 Aligned_cols=39 Identities=26% Similarity=0.495 Sum_probs=29.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEeecchhhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVP-WVTLLSMDSFY 81 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p-~v~iIs~Ddfy 81 (542)
|+.|+|+|+.||||||+.+.+.+.+... .+.++..|-++
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~ 40 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT 40 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC
Confidence 5789999999999999999999987532 34445544443
No 252
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.31 E-value=0.0043 Score=58.40 Aligned_cols=38 Identities=34% Similarity=0.357 Sum_probs=30.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhhh
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFY 81 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddfy 81 (542)
++++++|++||||||++..++..+.. ..+.++++|.+.
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 47899999999999999999988732 235577888653
No 253
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.28 E-value=0.0047 Score=63.12 Aligned_cols=41 Identities=34% Similarity=0.368 Sum_probs=33.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhhh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFY 81 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddfy 81 (542)
.++.+|+++|++|+||||++..||..+.. ..+.++++|.|.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 45789999999999999999999988832 246678988764
No 254
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.26 E-value=0.0051 Score=55.32 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=24.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
..-+|.+.|.-||||||+++.|++.||..
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34799999999999999999999999864
No 255
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.24 E-value=0.014 Score=62.46 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=32.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFY 81 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddfy 81 (542)
++.+|++.|+.||||||++..|+..|-. ..+.++++|.|-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4689999999999999999999988732 236678888764
No 256
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.21 E-value=0.004 Score=65.25 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=27.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
..|+|.|++||||||+++.|++.+|.+++
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 58999999999999999999999998865
No 257
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.21 E-value=0.0041 Score=58.51 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=25.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
+.|++|+|.++|||||+..+|.++|...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 6799999999999999999999999544
No 258
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.20 E-value=0.0051 Score=55.60 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 46 IGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
|.+.|++|+|||++++.+++.++.++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 679999999999999999999987765
No 259
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.20 E-value=0.0045 Score=58.19 Aligned_cols=26 Identities=50% Similarity=0.611 Sum_probs=24.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
|.+|+|+|.+||||||+++.|+..|.
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999984
No 260
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.0054 Score=63.43 Aligned_cols=40 Identities=43% Similarity=0.630 Sum_probs=34.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh--hchh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--YRVL 84 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf--y~~l 84 (542)
.+.+|.|+||+|||||-+|-.||+++|.+ +||+|+. |+.+
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~e---IIs~DSmQvYr~m 43 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGE---IISLDSMQVYRGL 43 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCc---EEecchhhhcCCC
Confidence 46899999999999999999999999976 5588876 7744
No 261
>KOG0739|consensus
Probab=96.18 E-value=0.0095 Score=60.85 Aligned_cols=53 Identities=25% Similarity=0.446 Sum_probs=42.0
Q ss_pred cccccCCCCCCccCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcH
Q psy9618 24 TIYTAGRPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNE 86 (542)
Q Consensus 24 ~~~~~~~ppw~~~~~~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~ 86 (542)
..||.+|-||- =|.+-||+|.|||.+|+++|.+-+-.+..+-|.|-.-+.+.+
T Consensus 157 qlFtGkR~Pwr----------giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGE 209 (439)
T KOG0739|consen 157 QLFTGKRKPWR----------GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 209 (439)
T ss_pred hhhcCCCCcce----------eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhcc
Confidence 45777888885 377999999999999999999999777766677766655443
No 262
>PRK09169 hypothetical protein; Validated
Probab=96.16 E-value=0.033 Score=69.49 Aligned_cols=106 Identities=8% Similarity=-0.117 Sum_probs=66.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
..-|.+.|..|+||||+++.|++.|+.+++ ++|.....-....+.+ .|...+ +-.+.-.+.++.+.
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~Fi---DtD~kIeks~GrkI~r------IFa~eG-~FRe~Eaa~V~Dll---- 2175 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKP---HSVRKIAKKIGKKIAR------IQALRG-LSPEQAAARVRDAL---- 2175 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCcc---ccHHHHHHHhCCCHHH------HHHhcC-chHHHHHHHHHHHh----
Confidence 357889999999999999999999999877 6665542110000100 111111 22333344444331
Q ss_pred eccceechhhchhcccccccCCCcEEEEEccccccChhhhc---cCCEEEEEECCHHHHHHHhh
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLE---LLDMKVFVDTDADVRLARRL 183 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~---l~Dl~IfLdad~d~rl~Rrl 183 (542)
. ..+||-.|.++...+..+. .-.++||+..+.++...|..
T Consensus 2176 --------------------r-~~vVLSTGGGav~~~enr~~L~~~GlvV~L~an~~tl~~Rty 2218 (2316)
T PRK09169 2176 --------------------R-WEVVLPAEGFGAAVEQARQALGAKGLRVMRINNGFAAPDTTY 2218 (2316)
T ss_pred --------------------c-CCeEEeCCCCcccCHHHHHHHHHCCEEEEEECCHHHHHHHhc
Confidence 1 2557777777666665544 33689999999999887764
No 263
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.15 E-value=0.0046 Score=61.96 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=23.7
Q ss_pred EEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhh
Q psy9618 48 ICGGSASGKTTVATKIIESLNVP--WVTLLSMDSF 80 (542)
Q Consensus 48 I~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddf 80 (542)
|.||+||||||+++.+.+.+... .+.+|.+|--
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 68999999999999999998542 4556677633
No 264
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.14 E-value=0.0044 Score=65.98 Aligned_cols=29 Identities=45% Similarity=0.732 Sum_probs=26.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
++++|+|+|.+||||||++..|.++|.-.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~ 32 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER 32 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence 58999999999999999999999999643
No 265
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.14 E-value=0.0039 Score=61.13 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=19.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKI 63 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~L 63 (542)
.-+++|+|||||||||+.+.|
T Consensus 28 Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 359999999999999999977
No 266
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.11 E-value=0.0053 Score=62.77 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=29.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEeecchh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVP-WVTLLSMDS 79 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p-~v~iIs~Dd 79 (542)
|.+|+|+|.+|||||||+..|+..|... .+.+|..|.
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G~V~~IKhd~ 38 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRGRVGTVKHMD 38 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4589999999999999999999999432 355555543
No 267
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.11 E-value=0.021 Score=61.99 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhhh
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFY 81 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg----~p~v~iIs~Ddfy 81 (542)
.+|++.|++|+||||++..|+..+- -..|.++++|.|-
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 5999999999999999999987663 2357788998863
No 268
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.10 E-value=0.0064 Score=63.49 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=32.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhhh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFY 81 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddfy 81 (542)
.++.+|+++|++||||||++..|+..+.. ..|.++++|-|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 35789999999999999999999998842 246667877653
No 269
>PHA03136 thymidine kinase; Provisional
Probab=96.05 E-value=0.013 Score=62.07 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=30.2
Q ss_pred CCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccc
Q psy9618 165 LDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFI 213 (542)
Q Consensus 165 ~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i 213 (542)
-|.+||++++.+++++|+.+|+...+ .+-..|.+.+...|+.++
T Consensus 192 pD~IIyL~l~~e~~~~RI~kRgR~~E-----~I~~~YL~~L~~~Y~~~~ 235 (378)
T PHA03136 192 GGNIVIMDLDECEHAERIIARGRPGE-----AIDVRFLCALHNIYICFM 235 (378)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCcc-----CCCHHHHHHHHHHHHHHH
Confidence 46899999999999999988865432 222355555555555443
No 270
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=96.01 E-value=0.0091 Score=59.00 Aligned_cols=27 Identities=44% Similarity=0.454 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCe
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPW 71 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~ 71 (542)
++|||+|.+||||||+|+.+.+ .|.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~-~g~~~ 27 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE-NYNAV 27 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh-cCCcE
Confidence 4899999999999999997744 45543
No 271
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.00 E-value=0.012 Score=55.90 Aligned_cols=39 Identities=26% Similarity=0.254 Sum_probs=30.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchhhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNV---PWVTLLSMDSFY 81 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~---p~v~iIs~Ddfy 81 (542)
...+.++||+|+|||.+|++|++.|.. .....++|-.|-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS 44 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence 357889999999999999999999985 234456776664
No 272
>PRK14974 cell division protein FtsY; Provisional
Probab=96.00 E-value=0.0067 Score=63.77 Aligned_cols=41 Identities=32% Similarity=0.394 Sum_probs=31.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhh
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSF 80 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddf 80 (542)
..+|.+|+++|++|+||||++..|+..|... .+.++++|.|
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 3458999999999999999999898877322 3445677755
No 273
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.00 E-value=0.016 Score=51.40 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=20.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
+...+.|.|++|+|||++++.+++.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 356899999999999999999999883
No 274
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.94 E-value=0.0061 Score=59.10 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 45 VIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
+|.|+|++||||||+.+.|+..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999999988875
No 275
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.93 E-value=0.022 Score=46.91 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 45 VIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
+|+++|..|+||||++..|+..|.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~ 24 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALA 24 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999873
No 276
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.91 E-value=0.01 Score=64.36 Aligned_cols=40 Identities=35% Similarity=0.350 Sum_probs=32.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLN---VPWVTLLSMDSF 80 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg---~p~v~iIs~Ddf 80 (542)
.+|.+|.++|++||||||++..||..|- -..+.++++|.|
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 4589999999999999999999998862 134667899875
No 277
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.90 E-value=0.0057 Score=57.15 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 45 VIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
||+|+|++||||||++.+|++.|.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999874
No 278
>PRK10867 signal recognition particle protein; Provisional
Probab=95.90 E-value=0.0072 Score=65.61 Aligned_cols=41 Identities=34% Similarity=0.395 Sum_probs=32.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchhhh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV---PWVTLLSMDSFY 81 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~---p~v~iIs~Ddfy 81 (542)
..|.+|.++|++||||||++..||..|.. ..+.++++|.|-
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 34799999999999999999999887732 246678988763
No 279
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.89 E-value=0.031 Score=59.57 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=32.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFY 81 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg--~p~v~iIs~Ddfy 81 (542)
.+.+|+++|++|+||||++..|+..+. -..+.++++|.|.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 468999999999999999999998772 1346678999874
No 280
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.84 E-value=0.0085 Score=64.47 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=31.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 81 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy 81 (542)
|.-|.+.||+|+||||+|+.|++.++.+++ .+++..|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi-~vD~t~f~ 87 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFI-KVEATKFT 87 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChhe-eecchhhc
Confidence 467899999999999999999999999877 23444443
No 281
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.84 E-value=0.0063 Score=60.53 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-++||.|.|||||||+++.|+--.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 489999999999999999986544
No 282
>PRK13768 GTPase; Provisional
Probab=95.83 E-value=0.0089 Score=60.34 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=29.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDS 79 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Dd 79 (542)
+++|+|.|++||||||++..++..+.. ..+.+++.|.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 579999999999999999999988732 2355667763
No 283
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.80 E-value=0.0073 Score=52.99 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q psy9618 44 FVIGICGGSASGKTTVATKII 64 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La 64 (542)
-+++|.|+|||||||+++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 689999999999999999986
No 284
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.77 E-value=0.0072 Score=59.89 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 44 FVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
-.++|.|||||||||+-+.|+--
T Consensus 32 e~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999977543
No 285
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.74 E-value=0.013 Score=51.60 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..+.|.|++|+||||+++.+++.+
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998
No 286
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.74 E-value=0.01 Score=61.33 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=32.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFY 81 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy 81 (542)
..+.+|+|+|++||||||++..|+..+... .+.+++.|..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 357899999999999999999999887321 35567888654
No 287
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.047 Score=62.96 Aligned_cols=38 Identities=32% Similarity=0.444 Sum_probs=31.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL----NVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L----g~p~v~iIs~Ddf 80 (542)
..+|++.|++|+||||.+.+|+..+ |...|.++++|.|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~ 226 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSF 226 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCccc
Confidence 5799999999999999999999766 2345677888865
No 288
>KOG1969|consensus
Probab=95.72 E-value=0.069 Score=60.46 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=30.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD 78 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~D 78 (542)
...|..+||++|.||||+|+.+|++-|+..+.+=..|
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASD 361 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASD 361 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccc
Confidence 3469999999999999999999999998766443334
No 289
>KOG1532|consensus
Probab=95.72 E-value=0.0095 Score=60.17 Aligned_cols=45 Identities=27% Similarity=0.395 Sum_probs=34.3
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCe--EEeecchhhhc
Q psy9618 38 GEQVEPFVIGICGGSASGKTTVATKIIESLNVPW--VTLLSMDSFYR 82 (542)
Q Consensus 38 ~~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~--v~iIs~Ddfy~ 82 (542)
|..++|.+|.+.|..||||||++++|..++.... ..+|.+|.-.+
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~ 60 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVR 60 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHh
Confidence 3456789999999999999999999999985321 23467775543
No 290
>PRK10646 ADP-binding protein; Provisional
Probab=95.68 E-value=0.011 Score=55.12 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=25.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
.-+|.+.|.-||||||+++.|++.||.+
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3589999999999999999999999974
No 291
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.67 E-value=0.036 Score=59.15 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=33.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFY 81 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg----~p~v~iIs~Ddfy 81 (542)
..+|.+.||+|+||||-..+||.++. .+.|.+|++|.|.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR 245 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR 245 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch
Confidence 68999999999999998888888774 4678889999885
No 292
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=95.62 E-value=0.005 Score=56.88 Aligned_cols=60 Identities=13% Similarity=0.278 Sum_probs=41.9
Q ss_pred CCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhcc-chhhccccCCCCcccEEEECCC
Q psy9618 165 LDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVK-PAFSTFIAPSMVHADIIVPRGG 228 (542)
Q Consensus 165 ~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~-p~y~~~i~p~~~~ADiVI~~~~ 228 (542)
.|+.|||++|++++++|+.+|+...+. .+-..|.+.+. ..|+.|+.......-++|+.+.
T Consensus 68 pdl~IYL~~~~e~~~~RI~kRgR~~E~----~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~~~ 128 (146)
T PF01712_consen 68 PDLIIYLDASPETCLERIKKRGREEEK----NIPLEYLERLHEEAYEDWLKKYDSTPVLVIDADN 128 (146)
T ss_dssp -SEEEEEE--HHHHHHHHHHCTTGGGT----TS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEECE
T ss_pred CCeEEEEeCCHHHHHHHHHHhCCchhc----CCCHHHHHHHhHHHHHHHHHhCCCCceEEEECCc
Confidence 489999999999999999998765431 23345777777 6888888776666667777654
No 293
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.62 E-value=0.012 Score=61.45 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTL 74 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~i 74 (542)
.-|.|.|++|+||||+++.||+.||.+++.+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV 95 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRV 95 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEE
Confidence 3589999999999999999999999997743
No 294
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.60 E-value=0.013 Score=62.16 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=33.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCe--EEeecch
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPW--VTLLSMD 78 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~--v~iIs~D 78 (542)
...+.+|.|+||..|||||++..|+.++...+ +.+||+|
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaD 110 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDAD 110 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCC
Confidence 45578999999999999999999999997543 7788887
No 295
>PLN02796 D-glycerate 3-kinase
Probab=95.59 E-value=0.0069 Score=63.64 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=32.9
Q ss_pred hccccccccccccccc----cccc--cccc-cCceEEEEeccccccChH
Q psy9618 305 RMWSVDVPIYNFVTHS----RETR--TKPM-YGANVIIFEGILAFHNPQ 346 (542)
Q Consensus 305 ~g~~v~~P~y~f~~~~----r~~~--~~~~-~~~~vii~EGi~~l~~~~ 346 (542)
+|++|.+|+|||+.|+ |.++ ...+ .|.+||||||++.-..+.
T Consensus 186 ~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~ 234 (347)
T PLN02796 186 EGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPL 234 (347)
T ss_pred CCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCC
Confidence 5789999999999988 4332 2344 799999999999877544
No 296
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.58 E-value=0.021 Score=55.68 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=29.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEeecch
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV-PWVTLLSMD 78 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~-p~v~iIs~D 78 (542)
++.+|+++|+.||||||+.+.++++++. ..+.++..|
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~ 58 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGD 58 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 5899999999999999999999998753 234444433
No 297
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.57 E-value=0.016 Score=61.30 Aligned_cols=40 Identities=20% Similarity=0.471 Sum_probs=34.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 81 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy 81 (542)
+-|.+++|-||+|+|||.+|+++++++|.+.+ .++..+.+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i-~vsa~eL~ 185 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPI-VMSAGELE 185 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeE-EEEHHHhh
Confidence 56889999999999999999999999999876 45666554
No 298
>PF05729 NACHT: NACHT domain
Probab=95.56 E-value=0.01 Score=54.40 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 45 VIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
++.|.|.+|+||||+++.++..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 689999999999999999999884
No 299
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.55 E-value=0.014 Score=59.20 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEE
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVT 73 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~ 73 (542)
-|.+.|++|+|||++|+.|++.+|.+++.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~ 51 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVML 51 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 45589999999999999999999988763
No 300
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.53 E-value=0.034 Score=56.81 Aligned_cols=91 Identities=19% Similarity=0.135 Sum_probs=54.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKE 119 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg--~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~ 119 (542)
+...|++.|++|+||||++..|+..+. -..+.++++|.+.-. ..++.. .......|......+.+.+.+.++.+++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~-~~~ql~-~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG-TVQQLQ-DYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHH-HHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 346999999999999999999998873 235667889877421 112221 1111222322223455555666655532
Q ss_pred CCeeccceechhhchhcccccccCCCcEEEEEccccc
Q psy9618 120 GKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAF 156 (542)
Q Consensus 120 g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~ 156 (542)
. .+.+++++|.....
T Consensus 152 ~----------------------~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 E----------------------ARVDYILIDTAGKN 166 (270)
T ss_pred c----------------------CCCCEEEEECCCCC
Confidence 1 23577899987554
No 301
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.50 E-value=0.014 Score=62.75 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=28.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
.|.-|.+.||+|+||||+|++|++.++.+++
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi 76 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFI 76 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 3567899999999999999999999999887
No 302
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.49 E-value=0.013 Score=63.66 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=32.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSF 80 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddf 80 (542)
..|.+|.++|++||||||++..||..|.. ..+.++++|.|
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 35899999999999999999999998842 24667788876
No 303
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.49 E-value=0.08 Score=53.54 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=24.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.+..+|+|.|++|+||||+|..+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 45789999999999999999999988
No 304
>PF13173 AAA_14: AAA domain
Probab=95.47 E-value=0.017 Score=51.71 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=28.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC-CCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN-VPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg-~p~v~iIs~Ddf 80 (542)
..++.|.|+.|+||||+++.+++.+. -..+..+++|+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 36899999999999999999998875 122223455544
No 305
>KOG3327|consensus
Probab=95.46 E-value=0.14 Score=49.07 Aligned_cols=132 Identities=21% Similarity=0.185 Sum_probs=68.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcH-HH-HHHHhccccCCCCC--------ccccHHhHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNE-EQ-HKKAAQNEYNFDHP--------DAFDFELLL 111 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~-e~-~~~~~~~~~~fd~p--------~a~D~~lL~ 111 (542)
.-..|.+.|--+|||||.+..|.+.+.-. ..--..+.|-...+. .. ...-.... ++-| .+-.|+...
T Consensus 4 rg~liV~eGlDrsgKstQ~~~l~~~l~~~-~~~~~l~~FP~Rst~iGk~i~~YL~k~--~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 4 RGALIVLEGLDRSGKSTQCGKLVESLIPG-LDPAELLRFPERSTSIGKLIDGYLRKK--SDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CccEEeeeccccCCceeehhHHHHHHHhc-cChHHhhhcchhcccccHHHHHHHHhc--cCCcHHHHHHHhccchhhHHH
Confidence 34689999999999999999999988421 100012222111000 00 00000000 1111 133455555
Q ss_pred HHHHHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcc
Q psy9618 112 PTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRD 186 (542)
Q Consensus 112 ~~L~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd 186 (542)
...+++.+|..+....|.|+.-.-.... + .=+|.++.- +.-..--|+++||+++++. ++||-.++
T Consensus 81 ~i~e~l~kg~~~ivDRY~~SGvAyS~AK----g---l~~dWc~~p--d~gL~KPDlvlfL~v~p~~-~a~rggfG 145 (208)
T KOG3327|consen 81 LIKEKLAKGTTLIVDRYSFSGVAYSAAK----G---LDLDWCKQP--DVGLPKPDLVLFLDVSPED-AARRGGFG 145 (208)
T ss_pred HHHHHHhcCCeEEEecceecchhhhhhc----C---CCcchhhCC--ccCCCCCCeEEEEeCCHHH-HHHhcCcc
Confidence 6667788888777777766443221100 0 111111111 1112234999999999999 77765554
No 306
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.44 E-value=0.014 Score=57.22 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=27.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh--hch
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--YRV 83 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf--y~~ 83 (542)
|.++.|.||+|+|||.+|-.||+++|.|.+ +.|.. |..
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI---~~Driq~y~~ 40 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVI---SLDRIQCYPE 40 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEE---EE-SGGG-GG
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEE---Eecceecccc
Confidence 468999999999999999999999998754 66654 553
No 307
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.44 E-value=0.01 Score=56.17 Aligned_cols=44 Identities=25% Similarity=0.248 Sum_probs=29.3
Q ss_pred cccccCCCCCCccCCC-CCCCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 24 TIYTAGRPPWYNKAGE-QVEPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 24 ~~~~~~~ppw~~~~~~-~~~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..|.++-.+..+-.+- -...-.|+|+|||||||||+-+.++...
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred HHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 3455555555543331 1223489999999999999999887643
No 308
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.43 E-value=0.06 Score=58.29 Aligned_cols=40 Identities=30% Similarity=0.376 Sum_probs=30.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL----NVPWVTLLSMDSFY 81 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L----g~p~v~iIs~Ddfy 81 (542)
+..+|++.|++|+||||+...|+..+ +...+.++..|.|.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r 233 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR 233 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 35699999999999999999998764 33445556666653
No 309
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.38 E-value=0.018 Score=57.00 Aligned_cols=29 Identities=31% Similarity=0.297 Sum_probs=24.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
.-+.+.||+|.||||+|+.||+++|.++.
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 36789999999999999999999998754
No 310
>KOG0707|consensus
Probab=95.37 E-value=0.2 Score=49.53 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=24.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
.-|.|+||+|+||+|+.+.|-++++-
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~ 63 (231)
T KOG0707|consen 38 KPIVLSGPSGVGKSTLLKRLREELGG 63 (231)
T ss_pred ceEEEeCCCCcchhHHHHHHHHHcCC
Confidence 68899999999999999999999984
No 311
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.35 E-value=0.016 Score=62.58 Aligned_cols=29 Identities=38% Similarity=0.505 Sum_probs=27.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
..|.+.||+|+|||++|+.|++.++.|++
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~ 145 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFA 145 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeE
Confidence 57999999999999999999999999876
No 312
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.35 E-value=0.012 Score=52.81 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 489999999999999999887655
No 313
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=95.34 E-value=0.015 Score=57.97 Aligned_cols=26 Identities=42% Similarity=0.553 Sum_probs=24.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
|.+|+|+|.+||||||++..|+++|.
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~ 26 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLK 26 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHH
Confidence 46899999999999999999999994
No 314
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.32 E-value=0.019 Score=45.30 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 45 VIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~L 67 (542)
+..|+|++||||||+-.++.-.|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999886655
No 315
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.29 E-value=0.013 Score=55.95 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999987644
No 316
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.017 Score=59.67 Aligned_cols=29 Identities=38% Similarity=0.515 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
--|.+.||+|||||-+|+.||+.|++|+.
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFa 126 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFA 126 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence 47889999999999999999999999987
No 317
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.27 E-value=0.012 Score=58.82 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+..++
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45999999999999999999987643
No 318
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=95.27 E-value=0.4 Score=48.83 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=48.3
Q ss_pred EEEEEECCHHHHHHHhhhcchhhhc---CCH--HHHHHHHHhhccchhhccccCC-CCcccEEEECCCCCHHHHHHHHHH
Q psy9618 167 MKVFVDTDADVRLARRLKRDILARG---RDL--EGVIKQYVNMVKPAFSTFIAPS-MVHADIIVPRGGENCVAIDLIVQH 240 (542)
Q Consensus 167 l~IfLdad~d~rl~Rrl~Rd~~~rg---r~~--~~vl~q~~~~v~p~y~~~i~p~-~~~ADiVI~~~~~n~~ai~~iv~~ 240 (542)
+|+|++.+.++..+|+..|...... -+. -...++|.+ ....|+..+..+ ...|.-.|..+.+-..+.-.+.+.
T Consensus 163 iKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~D~~~~~~yd~-y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ 241 (264)
T TIGR03709 163 LKFFLHISKEEQKKRFLARLDDPTKNWKFSPADLKERAYWDD-YMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEI 241 (264)
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHH-HHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHH
Confidence 6899999999999999887422211 111 122234433 334555555543 456776666565555555567777
Q ss_pred HHHHHHH
Q psy9618 241 IHSQLQA 247 (542)
Q Consensus 241 I~~~L~~ 247 (542)
|.+.|+.
T Consensus 242 ll~~l~~ 248 (264)
T TIGR03709 242 LLDALES 248 (264)
T ss_pred HHHHHHH
Confidence 7777764
No 319
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.26 E-value=0.013 Score=53.21 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 45 VIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
++.|.|++|+||||++..++..+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988874
No 320
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.25 E-value=0.016 Score=62.58 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
.-|.+.|++|+|||++|+.|++.++.|++
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~ 137 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFA 137 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCce
Confidence 45889999999999999999999999887
No 321
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.24 E-value=0.014 Score=56.70 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997654
No 322
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.23 E-value=0.014 Score=56.95 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 323
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.23 E-value=0.021 Score=52.86 Aligned_cols=34 Identities=38% Similarity=0.641 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecch
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNV--PWVTLLSMD 78 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~D 78 (542)
+|++.|+.||||||++..++..+.. ..+.++++|
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 4789999999999999999998721 234466776
No 324
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=95.23 E-value=0.053 Score=57.30 Aligned_cols=105 Identities=23% Similarity=0.370 Sum_probs=60.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHH-hHHHHHHHhHcCCe
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFE-LLLPTLQRLKEGKK 122 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~-lL~~~L~~lk~g~~ 122 (542)
..+.++|++|||||++.+.|.+. |. .+|++.+.-. ......+...-..|...+|+ .|...|..+..
T Consensus 142 ~~ivl~G~TGsGKT~iL~~L~~~-~~---~vlDlE~~ae------hrGS~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~--- 208 (345)
T PRK11784 142 PLVVLGGNTGSGKTELLQALANA-GA---QVLDLEGLAN------HRGSSFGRLGGPQPSQKDFENLLAEALLKLDP--- 208 (345)
T ss_pred ceEecCCCCcccHHHHHHHHHhc-CC---eEEECCchhh------hccccccCCCCCCcchHHHHHHHHHHHHcCCC---
Confidence 35679999999999999999764 32 2455544321 11112222222457777774 35555554421
Q ss_pred eccceechhhchhcccccccCCCcEEEEEc------cccccChhhhccC--CEEEEEECCHHHHHHHhhh
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEG------ILAFHNPQVLELL--DMKVFVDTDADVRLARRLK 184 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEG------i~~~~~~~l~~l~--Dl~IfLdad~d~rl~Rrl~ 184 (542)
...|++|+ -..++. .+.+.+ --+|+|++|.+.|++|++.
T Consensus 209 ----------------------~~~i~vE~Es~~IG~~~lP~-~l~~~m~~~~~v~i~~~~e~Rv~~l~~ 255 (345)
T PRK11784 209 ----------------------ARPIVVEDESRRIGRVHLPE-ALYEAMQQAPIVVVEAPLEERVERLLE 255 (345)
T ss_pred ----------------------CCeEEEEeccccccCccCCH-HHHHHHhhCCEEEEECCHHHHHHHHHH
Confidence 23356665 122221 222222 3578999999999999764
No 325
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.22 E-value=0.014 Score=56.57 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4599999999999999999997654
No 326
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.20 E-value=0.015 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999987654
No 327
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.19 E-value=0.015 Score=56.79 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999998665
No 328
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.19 E-value=0.016 Score=54.92 Aligned_cols=22 Identities=50% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q psy9618 46 IGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~L 67 (542)
|.|+|.+|+||||+.+.+++.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999999
No 329
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.18 E-value=0.023 Score=62.50 Aligned_cols=38 Identities=32% Similarity=0.420 Sum_probs=31.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL----NVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L----g~p~v~iIs~Ddf 80 (542)
..+|++.|++|+||||.+.+|+..+ |...|.++++|.|
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~ 297 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY 297 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence 5799999999999999999999876 2234667788764
No 330
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.17 E-value=0.015 Score=53.56 Aligned_cols=24 Identities=38% Similarity=0.313 Sum_probs=20.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
|..|.+.|++|||||||+++|...
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCC
Confidence 357889999999999999988553
No 331
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.17 E-value=0.016 Score=54.24 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=19.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
...+.++.|.|++|+||||+.+++.+.+.
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999988874
No 332
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.15 E-value=0.018 Score=57.84 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=24.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
+-+++|.|++||||||+++.+++.+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 457889999999999999999999863
No 333
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.14 E-value=0.027 Score=50.84 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=27.9
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 38 GEQVEPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 38 ~~~~~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.++.+|.++-.-|++|+|||.+++.||+.|
T Consensus 48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 367889999999999999999999999996
No 334
>PRK13695 putative NTPase; Provisional
Probab=95.12 E-value=0.017 Score=54.48 Aligned_cols=24 Identities=50% Similarity=0.642 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
+.|+|+|++||||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999988776
No 335
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.11 E-value=0.019 Score=55.07 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=23.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
...|+|+|++||||||+.+.|...+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 35899999999999999999988764
No 336
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.016 Score=56.32 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987644
No 337
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.10 E-value=0.023 Score=56.91 Aligned_cols=29 Identities=38% Similarity=0.523 Sum_probs=25.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
..++.++|.|++||||||+...|...+..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 35789999999999999999999888753
No 338
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.016 Score=57.38 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 599999999999999999997654
No 339
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.09 E-value=0.031 Score=57.53 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=29.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcC-CCeEEeecch
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLN-VPWVTLLSMD 78 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg-~p~v~iIs~D 78 (542)
.+.++|+|.|++||||||+.+.+.+.|. ...+.+|..|
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD 140 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGD 140 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCC
Confidence 3458999999999999999999999874 2234455444
No 340
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.09 E-value=0.024 Score=52.52 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=23.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
..+.+..++|++|+||||+.++|+++ |+
T Consensus 7 nR~~~fIltGgpGaGKTtLL~aLa~~-Gf 34 (183)
T COG3911 7 NRHKRFILTGGPGAGKTTLLAALARA-GF 34 (183)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHc-Cc
Confidence 34568889999999999999999775 43
No 341
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.017 Score=56.09 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 342
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=95.07 E-value=0.19 Score=50.18 Aligned_cols=182 Identities=17% Similarity=0.092 Sum_probs=89.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhcccc-----CCCCCccccHHhHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEY-----NFDHPDAFDFELLLPTLQ 115 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~-----~fd~p~a~D~~lL~~~L~ 115 (542)
+.|.+|.+.|..||||+.+.+.|.+.++-.++.+.+.. ..++++......-.+ .-+.-.-||.....+.|.
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~----~pt~eE~~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv 104 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALP----KPSDRERTQWYFQRYVQHLPAAGEIVLFDRSWYNRAGV 104 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCC----CCCHHHHcChHHHHHHHhCCCCCeEEEEeCchhhhHHH
Confidence 35899999999999999999999999998777554421 223333322111000 001112233333333332
Q ss_pred HhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccC-CEEEEEECCHHHHHHHhhhcchhhhc---
Q psy9618 116 RLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELL-DMKVFVDTDADVRLARRLKRDILARG--- 191 (542)
Q Consensus 116 ~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~-Dl~IfLdad~d~rl~Rrl~Rd~~~rg--- 191 (542)
.-..|. +.-..+.... +-+..|+..-..+.+ =+|+||+.+.++..+|+..|......
T Consensus 105 ~rv~~~-~~~~~~~~~~------------------~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk 165 (230)
T TIGR03707 105 ERVMGF-CTDEEYEEFL------------------RQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWK 165 (230)
T ss_pred HHhcCC-CCHHHHHHHH------------------HHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccccc
Confidence 211111 0000111000 001111111011111 16899999999999999887533222
Q ss_pred CCHH--HHHHHHHhhccchhhccccCC-CCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 192 RDLE--GVIKQYVNMVKPAFSTFIAPS-MVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 192 r~~~--~vl~q~~~~v~p~y~~~i~p~-~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
-+.. ...++|.+ ....|+..+..+ ...|.-.|..+.+-..+.-.+.+.|.+.|+
T Consensus 166 ~~~~D~~~~~~yd~-y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~i~~~l~ 222 (230)
T TIGR03707 166 LSPMDLASLDRWDD-YSRAKDEMFARTDTPEAPWTVVRSDDKKRARLNAIRHILSRLD 222 (230)
T ss_pred CCHHHHHHHHhHHH-HHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHhCC
Confidence 1111 11223333 334555555544 456776666555444444456666665554
No 343
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.07 E-value=0.017 Score=56.59 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987543
No 344
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.06 E-value=0.029 Score=49.81 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=27.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q psy9618 46 IGICGGSASGKTTVATKIIESL---NVPWVTLLSMDS 79 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Dd 79 (542)
|+++|.+|+||||++..|++.+ |. .+.++++|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~-~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGK-PVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEECCc
Confidence 7899999999999999999887 33 355778876
No 345
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.06 E-value=0.017 Score=56.44 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999997654
No 346
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.06 E-value=0.016 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 46 IGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg 68 (542)
|.|.|++|.|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998874
No 347
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.05 E-value=0.017 Score=56.53 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999887554
No 348
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.04 E-value=0.057 Score=59.78 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=30.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
+.=|.+.||+|+|||+++++|+..++.+++. ++..+|
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~-i~~~~~ 124 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS-ISGSDF 124 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeee-ccHHHH
Confidence 3458899999999999999999999998763 354444
No 349
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.04 E-value=0.016 Score=56.40 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3589999999999999999987654
No 350
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.03 E-value=0.017 Score=55.15 Aligned_cols=25 Identities=40% Similarity=0.518 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3599999999999999999987755
No 351
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.018 Score=57.08 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999997654
No 352
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.02 E-value=0.021 Score=51.56 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 57899999999999999998854
No 353
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.01 E-value=0.13 Score=55.29 Aligned_cols=42 Identities=36% Similarity=0.419 Sum_probs=32.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhhh
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFY 81 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddfy 81 (542)
.+.|.+|..+|-.||||||.|-.||..|.- ..+-++++|-|.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 345789999999999999999999998832 224456776553
No 354
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.00 E-value=0.026 Score=59.90 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=28.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLL 75 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iI 75 (542)
|.-|.+.|++|+|||++|+++++.++.+++.+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 456889999999999999999999998876543
No 355
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.97 E-value=0.019 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999997654
No 356
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.96 E-value=0.023 Score=57.42 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..-+.+.|++|+||||+|+.+++.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999976
No 357
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.96 E-value=0.026 Score=60.60 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=28.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTL 74 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~i 74 (542)
|.-|.+.|++|+|||++|++++++++.+++.+
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEEe
Confidence 45688999999999999999999999887744
No 358
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.95 E-value=0.019 Score=56.40 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3599999999999999999998776
No 359
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.94 E-value=0.019 Score=55.55 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3599999999999999999997654
No 360
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.93 E-value=0.02 Score=56.05 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999997655
No 361
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.92 E-value=0.019 Score=56.97 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3599999999999999999997654
No 362
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.02 Score=56.10 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999997654
No 363
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.018 Score=55.97 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 45 VIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~L 67 (542)
+++|.|++||||||+.+.|+..+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999997654
No 364
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.92 E-value=0.02 Score=56.69 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3599999999999999999998654
No 365
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.91 E-value=0.025 Score=57.51 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
-+|.|+|++||||||+.+.+...+.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 4899999999999999999988775
No 366
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.02 Score=56.55 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999998765
No 367
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.90 E-value=0.02 Score=54.84 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 44 FVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
-+++|.|+|||||||+-+.+|--
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhc
Confidence 59999999999999999977653
No 368
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.90 E-value=0.018 Score=56.84 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3589999999999999999997654
No 369
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.89 E-value=0.021 Score=55.21 Aligned_cols=24 Identities=33% Similarity=0.228 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999997654
No 370
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.88 E-value=0.02 Score=56.85 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997654
No 371
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.86 E-value=0.021 Score=55.44 Aligned_cols=25 Identities=36% Similarity=0.207 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999997654
No 372
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.85 E-value=0.021 Score=56.61 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3599999999999999999997544
No 373
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.022 Score=53.75 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987654
No 374
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.82 E-value=0.029 Score=62.32 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPW 71 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~ 71 (542)
..|..++||+||||||..+.|+++||+..
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v 73 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEV 73 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 45999999999999999999999999753
No 375
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.81 E-value=0.029 Score=52.00 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=25.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
..-+|.+.|.-||||||+++.|++.||.
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 4569999999999999999999999985
No 376
>PRK06893 DNA replication initiation factor; Validated
Probab=94.80 E-value=0.18 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..+.+.|++|+|||+++++++.++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999886
No 377
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=94.80 E-value=0.023 Score=61.36 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=24.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
|.+|+|+|.+||||||++..|+.+|..
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~ 27 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAA 27 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 469999999999999999999999843
No 378
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.79 E-value=0.023 Score=55.28 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 379
>PHA02244 ATPase-like protein
Probab=94.78 E-value=0.031 Score=59.31 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=26.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVT 73 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~ 73 (542)
.-|.|.|++|+|||++|+.|+..++.|++.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~ 149 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYF 149 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 346779999999999999999999999774
No 380
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.78 E-value=0.21 Score=55.53 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
+--+.++|+.|+||||+|+.|++.|+..
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3456799999999999999999999753
No 381
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.77 E-value=0.023 Score=54.30 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKII 64 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La 64 (542)
.-+++|.|++||||||+.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999999874
No 382
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.77 E-value=0.022 Score=55.84 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999997654
No 383
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.73 E-value=0.024 Score=56.73 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
=+|+|.|+||+||||+-+.||--.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999886544
No 384
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.73 E-value=0.024 Score=55.79 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4599999999999999999997754
No 385
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.72 E-value=0.024 Score=56.42 Aligned_cols=25 Identities=16% Similarity=0.107 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997654
No 386
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.71 E-value=0.025 Score=53.16 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3599999999999999999997655
No 387
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.71 E-value=0.023 Score=56.33 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 599999999999999999997653
No 388
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.71 E-value=0.024 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999987654
No 389
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.71 E-value=0.024 Score=55.55 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999887543
No 390
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.70 E-value=0.024 Score=56.69 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4599999999999999999998765
No 391
>PF13479 AAA_24: AAA domain
Probab=94.67 E-value=0.029 Score=55.04 Aligned_cols=33 Identities=33% Similarity=0.465 Sum_probs=26.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
++..|.|.|++|+||||+|..+ +...+|++|.=
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~------~k~l~id~E~g 34 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL------PKPLFIDTENG 34 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC------CCeEEEEeCCC
Confidence 5789999999999999999876 44556676543
No 392
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.67 E-value=0.024 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4599999999999999999998655
No 393
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.025 Score=55.17 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 799999999999999999987654
No 394
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.66 E-value=0.025 Score=56.36 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 395
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.65 E-value=0.025 Score=55.68 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3599999999999999999997644
No 396
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.65 E-value=0.026 Score=54.29 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.-+++|.|++||||||+.+.|+-.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999998753
No 397
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.64 E-value=0.025 Score=57.00 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999997654
No 398
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.64 E-value=0.026 Score=54.28 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3599999999999999999997765
No 399
>PF13245 AAA_19: Part of AAA domain
Probab=94.64 E-value=0.033 Score=45.69 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCcHH-HHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKT-TVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKT-TvAk~La~~L 67 (542)
.+..|.||+||||| |+++.+++.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46778999999999 5555555554
No 400
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.64 E-value=0.025 Score=55.14 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999997654
No 401
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=94.63 E-value=0.026 Score=52.47 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
.=|.|+|+|||||||+|..|.++ |..
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~~-g~~ 40 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIKR-GHR 40 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCe
Confidence 56889999999999999988876 443
No 402
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.63 E-value=0.026 Score=55.17 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4599999999999999999997654
No 403
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.62 E-value=0.026 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3599999999999999999987654
No 404
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=94.62 E-value=0.065 Score=57.09 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=41.9
Q ss_pred CCCCCccccccCccccccccccccccCCCCCCccCC-----------CCCCCEEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 3 KTGKSSTKKLSAESILQSKTRTIYTAGRPPWYNKAG-----------EQVEPFVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 3 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~ppw~~~~~-----------~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
|++.-+..+...++++....-++.-..++.|+.-.- ..+.--.+||.|-|||||||++.+|.+.+.-
T Consensus 262 P~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s 339 (534)
T COG4172 262 PSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS 339 (534)
T ss_pred CCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc
Confidence 445555555556666665553332234456653211 1223348999999999999999999887753
No 405
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.62 E-value=0.031 Score=48.60 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy9618 45 VIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.|.|.|.+||||||+.+.|+..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 3789999999999999988765
No 406
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.61 E-value=0.04 Score=54.67 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=28.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchh
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNV---PWVTLLSMDS 79 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~---p~v~iIs~Dd 79 (542)
++|+|+|--||||||+|..|+.+|-. ..|-++++|.
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 47999999999999999997777621 2355678885
No 407
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.61 E-value=0.024 Score=60.80 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
-=|.|+|++|+||||+|++||+-+.
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHHH
Confidence 3588999999999999999999874
No 408
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.60 E-value=0.026 Score=55.60 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997654
No 409
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.60 E-value=0.026 Score=56.31 Aligned_cols=25 Identities=40% Similarity=0.271 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997654
No 410
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.60 E-value=0.027 Score=53.32 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3589999999999999999997754
No 411
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.037 Score=62.57 Aligned_cols=57 Identities=19% Similarity=0.336 Sum_probs=40.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCcc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA 104 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a 104 (542)
..|+++.||+|.|||++++.||+.+|-+++. +|++... ++.-.+.+..-|.=.-|+.
T Consensus 350 GpILcLVGPPGVGKTSLgkSIA~al~RkfvR-~sLGGvr----DEAEIRGHRRTYIGamPGr 406 (782)
T COG0466 350 GPILCLVGPPGVGKTSLGKSIAKALGRKFVR-ISLGGVR----DEAEIRGHRRTYIGAMPGK 406 (782)
T ss_pred CcEEEEECCCCCCchhHHHHHHHHhCCCEEE-EecCccc----cHHHhccccccccccCChH
Confidence 4799999999999999999999999988874 4665553 2322334444444444554
No 412
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.58 E-value=0.028 Score=53.00 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3589999999999999999998765
No 413
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.58 E-value=0.028 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999987654
No 414
>PRK10908 cell division protein FtsE; Provisional
Probab=94.58 E-value=0.027 Score=55.23 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4599999999999999999997554
No 415
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=94.56 E-value=0.027 Score=56.79 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 39 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 39 NQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3599999999999999999998654
No 416
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.55 E-value=0.028 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4599999999999999999997654
No 417
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.54 E-value=0.028 Score=51.65 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3599999999999999999997765
No 418
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.54 E-value=0.027 Score=55.70 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3599999999999999999998665
No 419
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.54 E-value=0.032 Score=53.85 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=22.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
+.-.+.++|+|||||||+.+.|.....
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 345789999999999999999877653
No 420
>KOG4622|consensus
Probab=94.53 E-value=0.22 Score=48.05 Aligned_cols=183 Identities=16% Similarity=0.232 Sum_probs=92.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH---HcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIE---SLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~---~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
.++++.|-++|||||+++.|.. .|.+.+++.++-|+|...-++..-..+......| +..+..++..+.
T Consensus 2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRgr~-------~~~iEk~ISaiq-- 72 (291)
T KOG4622|consen 2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRGRF-------ECHIEKCISAIQ-- 72 (291)
T ss_pred ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhchH-------HHHHHHHHHHHh--
Confidence 3678999999999999998864 3445566677889997432321111111111111 112233333332
Q ss_pred Ceeccce-echhhchhcccccccCCCcEEEEEccccccCh--hhhc-----cCCE-EEEEECCHHHHHHHhhhcchhhhc
Q psy9618 121 KKVDVPI-YNFVTHSRETRTKPMYGANVIIFEGILAFHNP--QVLE-----LLDM-KVFVDTDADVRLARRLKRDILARG 191 (542)
Q Consensus 121 ~~v~~P~-yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~--~l~~-----l~Dl-~IfLdad~d~rl~Rrl~Rd~~~rg 191 (542)
+...||- +.....+. ....|..++++|.++-+..- .+.. .|-+ .||+....+.++.+-..|...++.
T Consensus 73 edtdwppqvrrisssg----dynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~Rsda~k~ 148 (291)
T KOG4622|consen 73 EDTDWPPQVRRISSSG----DYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHRSDAEKQ 148 (291)
T ss_pred cccCCCchheeccccC----CcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhccccccchhC
Confidence 2333442 22211111 12356788999998654321 1111 2222 599999999999997777544432
Q ss_pred CCHHHHHHHHHhhc-cchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 192 RDLEGVIKQYVNMV-KPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 192 r~~~~vl~q~~~~v-~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
..+++++..+.+ .|+.-...+ .-.+++. +.+-..+-+.+...|...+.
T Consensus 149 --~~dtiRki~EklE~PD~~ea~e----~NSitLe-g~dmd~~geallafia~~~d 197 (291)
T KOG4622|consen 149 --KNDTIRKIFEKLEDPDEIEALE----ENSITLE-GDDMDIDGEALLAFIAFDFD 197 (291)
T ss_pred --ccHHHHHHHHhccCccHHHHHH----hcceeec-cccccchHHHHHHHHHHhcc
Confidence 334444444432 233221111 1234443 33333344555555554443
No 421
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=94.52 E-value=0.028 Score=56.13 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
--+++|.|++||||||+.+.|+..+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3599999999999999999998654
No 422
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=94.52 E-value=0.031 Score=59.49 Aligned_cols=28 Identities=39% Similarity=0.610 Sum_probs=25.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
.+.+|+|+|.+||||||++.+|.+.|..
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~ 231 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIA 231 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999954
No 423
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.52 E-value=0.028 Score=56.10 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|+|++||||||+.+.|+-.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 589999999999999999998654
No 424
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.52 E-value=0.3 Score=56.86 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhh
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 81 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy 81 (542)
.+.+.||+|+|||++|+.|++.++.+.+ .++|..|-
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~-~~d~se~~ 521 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLE-RFDMSEYM 521 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeE-EEeCchhh
Confidence 5789999999999999999999987644 55776664
No 425
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.51 E-value=0.028 Score=56.28 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 30 NGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3589999999999999999997754
No 426
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.50 E-value=0.03 Score=53.98 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4599999999999999999987654
No 427
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.50 E-value=0.028 Score=56.49 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 30 RSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3599999999999999999998765
No 428
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.50 E-value=0.029 Score=55.27 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=22.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|+|++||||||+.+.|+..+.
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 33 GQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCccC
Confidence 46999999999999999999987653
No 429
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.48 E-value=0.029 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3599999999999999999997654
No 430
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.48 E-value=0.031 Score=52.36 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999987654
No 431
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.48 E-value=0.029 Score=55.34 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3589999999999999999997665
No 432
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.47 E-value=0.026 Score=57.04 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4599999999999999999987654
No 433
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.47 E-value=0.03 Score=54.43 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4599999999999999999987654
No 434
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.47 E-value=0.029 Score=54.98 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999997655
No 435
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.46 E-value=0.029 Score=56.41 Aligned_cols=25 Identities=44% Similarity=0.565 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 32 GEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4599999999999999999998755
No 436
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.03 Score=54.39 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999997654
No 437
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.45 E-value=0.03 Score=55.64 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999998654
No 438
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.44 E-value=0.049 Score=55.98 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=24.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCe
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPW 71 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~ 71 (542)
..+.+.|++|+|||++|+.+++.++.+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3567999999999999999999998653
No 439
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=94.44 E-value=0.12 Score=51.52 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=29.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLS 76 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs 76 (542)
.|.+|.+.|..||||+.+.+.|.+.|+-.++.+.+
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~ 64 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHA 64 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEe
Confidence 46899999999999999999999998876665544
No 440
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.44 E-value=0.03 Score=55.69 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997654
No 441
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.43 E-value=0.03 Score=55.96 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 30 KELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3589999999999999999998755
No 442
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.43 E-value=0.047 Score=58.81 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=32.9
Q ss_pred CCCCccCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q psy9618 31 PPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLL 75 (542)
Q Consensus 31 ppw~~~~~~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iI 75 (542)
|.+|...|- ..|.-|.+.|++|+|||++|++++..++.+++.+.
T Consensus 168 ~~~~~~~Gl-~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~ 211 (398)
T PTZ00454 168 PELYEQIGI-DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV 211 (398)
T ss_pred HHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 444444331 23567889999999999999999999998877543
No 443
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.43 E-value=0.03 Score=55.13 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998654
No 444
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.43 E-value=0.031 Score=54.66 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3589999999999999999997654
No 445
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.43 E-value=0.03 Score=55.36 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+..+.
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999986553
No 446
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.42 E-value=0.03 Score=56.60 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3599999999999999999997654
No 447
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.42 E-value=0.03 Score=56.10 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 26 GEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997654
No 448
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.42 E-value=0.048 Score=60.28 Aligned_cols=38 Identities=21% Similarity=0.396 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 81 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy 81 (542)
|.-|.+.||+|+|||.+|+++|..+|.+.+ .+++..++
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~-~l~~~~l~ 296 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLL-RLDVGKLF 296 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEE-EEEhHHhc
Confidence 566889999999999999999999999876 34555544
No 449
>PRK04195 replication factor C large subunit; Provisional
Probab=94.41 E-value=0.03 Score=61.81 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=27.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
+..+.|.|++|+||||+|++|++.+|++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~i 68 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVI 68 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 467889999999999999999999998765
No 450
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.41 E-value=0.03 Score=55.97 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 31 NEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3589999999999999999997653
No 451
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.41 E-value=0.031 Score=55.39 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4599999999999999999998765
No 452
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.41 E-value=0.031 Score=53.17 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+..+.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999987653
No 453
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.41 E-value=0.03 Score=56.74 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 35 Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3599999999999999999997654
No 454
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.40 E-value=0.026 Score=59.54 Aligned_cols=26 Identities=31% Similarity=0.646 Sum_probs=23.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
...|.|+|++||||||+.++|...+.
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 46899999999999999999988775
No 455
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.40 E-value=0.03 Score=55.18 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997643
No 456
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.39 E-value=0.033 Score=59.17 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=23.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+|+|+|++||||||+.+.|.+.+.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46999999999999999999998873
No 457
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.71 Score=53.49 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=30.5
Q ss_pred CCCE-EEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhhh
Q psy9618 41 VEPF-VIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFY 81 (542)
Q Consensus 41 ~~~~-IIgI~G~sGSGKTTvAk~La~~Lg--~p~v~iIs~Ddfy 81 (542)
.+|. .....||+|+|||.+|++||+.|. -....-++|-.|-
T Consensus 518 ~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~ 561 (786)
T COG0542 518 NRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYM 561 (786)
T ss_pred CCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHH
Confidence 3443 667899999999999999999994 1233456777764
No 458
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.38 E-value=0.031 Score=55.44 Aligned_cols=25 Identities=36% Similarity=0.260 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999997654
No 459
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.37 E-value=0.033 Score=56.73 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+..+.
T Consensus 46 Ge~~~IiG~nGsGKSTLl~~l~Gl~~ 71 (274)
T PRK14265 46 KKIIAFIGPSGCGKSTLLRCFNRMND 71 (274)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc
Confidence 35899999999999999999986543
No 460
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.37 E-value=0.032 Score=54.90 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 489999999999999999998665
No 461
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.37 E-value=0.14 Score=51.74 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEeecch
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL----NVPWVTLLSMD 78 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L----g~p~v~iIs~D 78 (542)
-++.|+|++|+||||++..++..+ |.+ +..++++
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~-vl~iS~E 68 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVR-VGTISLE 68 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCce-EEEEEcc
Confidence 488899999999999999887765 333 4445654
No 462
>KOG0741|consensus
Probab=94.37 E-value=0.044 Score=59.92 Aligned_cols=38 Identities=32% Similarity=0.471 Sum_probs=35.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhh
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 81 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy 81 (542)
.-+.+.||+|||||++|..+|..-++|+|.++|.++..
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~mi 576 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMI 576 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHcc
Confidence 47889999999999999999999999999999988774
No 463
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.37 E-value=0.032 Score=54.79 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=22.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..-+++|.|++||||||+.+.|+-.+
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34599999999999999999998765
No 464
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.094 Score=57.97 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD 78 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~D 78 (542)
.+..|.+.||+|+|||.+|++++..++.+++.+...+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence 3558999999999999999999999999888665553
No 465
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.35 E-value=0.032 Score=55.88 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 29 GEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4599999999999999999987754
No 466
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.35 E-value=0.053 Score=59.07 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=33.1
Q ss_pred CCCCCccCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q psy9618 30 RPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLS 76 (542)
Q Consensus 30 ~ppw~~~~~~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs 76 (542)
.|.||...|. ..+.-|.+.|++|+|||++|++++.+++.+++.+..
T Consensus 205 ~p~~~~~~gi-~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~ 250 (438)
T PTZ00361 205 HPELYDDIGI-KPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVG 250 (438)
T ss_pred CHHHHHhcCC-CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEec
Confidence 3444443332 124567789999999999999999999988775543
No 467
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.34 E-value=0.032 Score=56.47 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 47 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 47 HAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3589999999999999999998754
No 468
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.34 E-value=0.035 Score=52.29 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+-.+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999977653
No 469
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.33 E-value=0.034 Score=54.09 Aligned_cols=22 Identities=36% Similarity=0.249 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q psy9618 44 FVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.+++|+|++||||||+.+.|+-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6889999999999999998864
No 470
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.33 E-value=0.032 Score=55.13 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 25 GERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999987654
No 471
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.32 E-value=0.033 Score=55.72 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14245 29 KSVVAFIGPSGCGKSTFLRLFNRMN 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhh
Confidence 3589999999999999999997643
No 472
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.32 E-value=0.032 Score=56.70 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3599999999999999999997654
No 473
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.30 E-value=0.034 Score=53.88 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4599999999999999999997765
No 474
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.30 E-value=0.034 Score=54.36 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997654
No 475
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.30 E-value=0.037 Score=48.25 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy9618 46 IGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~ 65 (542)
|+|.|.+||||||+.+.|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999974
No 476
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.29 E-value=0.034 Score=55.60 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+..+.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 29 NQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc
Confidence 45899999999999999999986543
No 477
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.29 E-value=0.034 Score=55.97 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
-+++|.|++||||||+.+.|+..+.
T Consensus 39 e~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 39 EVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4899999999999999999987653
No 478
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.28 E-value=0.034 Score=55.66 Aligned_cols=24 Identities=38% Similarity=0.354 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 31 SVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 489999999999999999998765
No 479
>KOG0780|consensus
Probab=94.26 E-value=0.16 Score=53.84 Aligned_cols=51 Identities=33% Similarity=0.383 Sum_probs=38.3
Q ss_pred cCCCCCCccCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhh
Q psy9618 28 AGRPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFY 81 (542)
Q Consensus 28 ~~~ppw~~~~~~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy 81 (542)
+|.++|... ..+|-+|.+.|-.||||||.|..+|..+.-. .+.+++.|-|.
T Consensus 89 p~~~~~~~~---K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 89 PGKSALQPK---KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR 141 (483)
T ss_pred CCCcccccc---cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc
Confidence 466677542 3457899999999999999999999988432 24467777774
No 480
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.26 E-value=0.031 Score=55.82 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.-+++|+|++||||||+.+.|+..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 33 GEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 459999999999999999988653
No 481
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.25 E-value=0.042 Score=55.19 Aligned_cols=26 Identities=42% Similarity=0.491 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..-+++|.|++||||||+.+.|+..+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34599999999999999999987654
No 482
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.24 E-value=0.034 Score=57.04 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999997654
No 483
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=94.24 E-value=0.035 Score=56.43 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+..+.
T Consensus 50 Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 50 NEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45999999999999999999987653
No 484
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.24 E-value=0.035 Score=55.65 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 32 NRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccc
Confidence 3589999999999999999998654
No 485
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=94.24 E-value=0.26 Score=54.39 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=30.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLL 75 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iI 75 (542)
.+.+.+|.+-|.-||||++..+.|.+.|+-.++.+.
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~ 72 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETH 72 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEE
Confidence 346899999999999999999999999987766443
No 486
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.032 Score=54.08 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+..+.
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 35999999999999999999877653
No 487
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.22 E-value=0.033 Score=55.21 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 31 GEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCC
Confidence 4599999999999999999886543
No 488
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.22 E-value=0.034 Score=55.65 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 31 QEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCc
Confidence 4699999999999999999998754
No 489
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.21 E-value=0.035 Score=55.45 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.-+++|.|++||||||+.+.|+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 31 NEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999998764
No 490
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.21 E-value=0.035 Score=56.39 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 35 GEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3599999999999999999997654
No 491
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.21 E-value=0.036 Score=55.39 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 29 NQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3489999999999999999998654
No 492
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.20 E-value=0.036 Score=55.06 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3599999999999999999997654
No 493
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.19 E-value=0.035 Score=56.30 Aligned_cols=25 Identities=32% Similarity=0.293 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 33 GKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997654
No 494
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.18 E-value=0.034 Score=56.42 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3599999999999999999987654
No 495
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.17 E-value=0.084 Score=55.89 Aligned_cols=38 Identities=37% Similarity=0.548 Sum_probs=28.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFY 81 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg--~p~v~iIs~Ddfy 81 (542)
...|.++|++|+|||.+|-.++++|| .|++. ++.-..|
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~-isgSEiy 89 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVS-ISGSEIY 89 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE-EEGGGG-
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE-cccceee
Confidence 36888999999999999999999998 67773 4544454
No 496
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.17 E-value=0.036 Score=58.56 Aligned_cols=23 Identities=30% Similarity=0.301 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 44 FVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
=++++.|||||||||+-+.||--
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999988753
No 497
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.17 E-value=0.037 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3599999999999999999997654
No 498
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.16 E-value=0.037 Score=55.64 Aligned_cols=25 Identities=40% Similarity=0.250 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 31 GDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4599999999999999999998765
No 499
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=94.16 E-value=0.036 Score=56.03 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 599999999999999999987654
No 500
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=94.15 E-value=0.035 Score=58.12 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
-+++|.|+|||||||+++.|+..+.
T Consensus 34 e~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 34 EVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 5899999999999999999987654
Done!