Query psy9618
Match_columns 542
No_of_seqs 421 out of 2852
Neff 6.8
Searched_HMMs 29240
Date Sat Aug 17 00:22:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uj2_A Uridine-cytidine kinase 99.9 1.2E-26 4E-31 230.7 19.9 207 41-247 20-233 (252)
2 3tqc_A Pantothenate kinase; bi 99.9 8.8E-25 3E-29 225.2 15.5 190 40-232 89-313 (321)
3 1bd3_D Uprtase, uracil phospho 99.9 1.5E-24 5.2E-29 214.1 10.2 99 414-512 30-243 (243)
4 3dmp_A Uracil phosphoribosyltr 99.9 2.5E-24 8.7E-29 209.3 9.3 96 416-512 8-216 (217)
5 2jeo_A Uridine-cytidine kinase 99.9 1.6E-22 5.4E-27 200.0 20.8 206 41-247 23-235 (245)
6 2ehj_A Uracil phosphoribosyltr 99.9 7.7E-24 2.6E-28 204.8 9.3 94 418-512 2-208 (208)
7 1v9s_A Uracil phosphoribosyltr 99.9 9.9E-24 3.4E-28 204.1 9.6 94 418-512 2-208 (208)
8 1o5o_A Uracil phosphoribosyltr 99.9 8.5E-24 2.9E-28 206.1 9.0 95 418-512 14-221 (221)
9 3asz_A Uridine kinase; cytidin 99.9 1.5E-22 5E-27 194.7 16.5 203 42-247 5-207 (211)
10 1a7j_A Phosphoribulokinase; tr 99.9 4.1E-23 1.4E-27 210.1 8.8 186 42-228 4-216 (290)
11 1xtt_A Probable uracil phospho 99.9 3.5E-22 1.2E-26 194.2 8.8 92 418-510 2-216 (216)
12 1sq5_A Pantothenate kinase; P- 99.8 8.6E-21 3E-25 194.3 16.0 187 41-230 78-299 (308)
13 1i5e_A Uracil phosphoribosyltr 99.8 2.6E-21 9E-26 187.7 9.7 94 418-512 3-209 (209)
14 2e55_A Uracil phosphoribosyltr 99.8 3.2E-21 1.1E-25 186.5 9.3 92 421-512 3-206 (208)
15 2ga8_A Hypothetical 39.9 kDa p 99.8 9.3E-21 3.2E-25 196.6 10.3 153 71-227 155-351 (359)
16 1odf_A YGR205W, hypothetical 3 99.8 4.3E-20 1.5E-24 187.9 11.8 186 40-229 28-278 (290)
17 3c8u_A Fructokinase; YP_612366 99.8 2.8E-19 9.7E-24 172.2 14.7 179 42-226 21-207 (208)
18 3aez_A Pantothenate kinase; tr 99.8 2.2E-18 7.4E-23 177.1 18.4 188 40-231 87-303 (312)
19 2grj_A Dephospho-COA kinase; T 99.8 3.7E-18 1.3E-22 163.4 15.5 170 41-243 10-185 (192)
20 1rz3_A Hypothetical protein rb 99.8 2.3E-19 8E-24 172.0 5.4 173 41-228 20-201 (201)
21 4i1u_A Dephospho-COA kinase; s 99.7 7.3E-18 2.5E-22 163.4 13.2 188 40-246 6-203 (210)
22 1jjv_A Dephospho-COA kinase; P 99.7 2.6E-16 9E-21 150.4 13.8 186 43-247 2-196 (206)
23 2f6r_A COA synthase, bifunctio 99.7 3.7E-16 1.3E-20 157.9 14.8 186 40-246 72-267 (281)
24 2qt1_A Nicotinamide riboside k 99.6 3.7E-16 1.3E-20 149.7 8.4 182 42-246 20-204 (207)
25 2if2_A Dephospho-COA kinase; a 99.6 1.1E-15 3.7E-20 145.8 10.4 182 43-247 1-191 (204)
26 1vht_A Dephospho-COA kinase; s 99.6 5.8E-15 2E-19 142.4 14.6 169 41-228 2-179 (218)
27 3r20_A Cytidylate kinase; stru 99.6 1.4E-14 4.9E-19 142.5 13.5 188 41-248 7-228 (233)
28 1cke_A CK, MSSA, protein (cyti 99.6 4.9E-14 1.7E-18 136.2 15.4 184 43-247 5-222 (227)
29 1uf9_A TT1252 protein; P-loop, 99.6 1.3E-14 4.5E-19 137.5 11.0 181 41-247 6-193 (203)
30 3ake_A Cytidylate kinase; CMP 99.5 2.1E-13 7.2E-18 129.6 15.8 171 45-245 4-206 (208)
31 1q3t_A Cytidylate kinase; nucl 99.5 6.6E-13 2.2E-17 130.0 18.7 185 42-247 15-234 (236)
32 4e22_A Cytidylate kinase; P-lo 99.5 5.8E-13 2E-17 132.1 17.7 186 43-248 27-245 (252)
33 2h92_A Cytidylate kinase; ross 99.5 6.7E-13 2.3E-17 127.8 15.7 187 43-246 3-216 (219)
34 3lw7_A Adenylate kinase relate 99.4 3.8E-13 1.3E-17 123.3 10.8 170 44-246 2-175 (179)
35 1tev_A UMP-CMP kinase; ploop, 99.4 2E-12 6.7E-17 121.2 11.6 177 42-246 2-193 (196)
36 2bwj_A Adenylate kinase 5; pho 99.4 7.2E-13 2.5E-17 125.0 8.2 122 42-187 11-138 (199)
37 3t61_A Gluconokinase; PSI-biol 99.4 6.9E-12 2.4E-16 119.3 15.1 157 43-247 18-179 (202)
38 1ukz_A Uridylate kinase; trans 99.4 7.9E-12 2.7E-16 118.8 14.6 168 41-247 13-201 (203)
39 1qf9_A UMP/CMP kinase, protein 99.3 2.4E-12 8.1E-17 120.4 9.9 165 42-247 5-191 (194)
40 2cdn_A Adenylate kinase; phosp 99.3 9.3E-12 3.2E-16 118.4 13.6 163 41-245 18-199 (201)
41 3vaa_A Shikimate kinase, SK; s 99.3 2.8E-12 9.7E-17 122.1 9.7 163 41-247 23-195 (199)
42 1zuh_A Shikimate kinase; alpha 99.3 9E-12 3.1E-16 114.9 11.0 156 42-243 6-165 (168)
43 2c95_A Adenylate kinase 1; tra 99.3 5.6E-12 1.9E-16 118.6 9.5 40 41-83 7-46 (196)
44 2iyv_A Shikimate kinase, SK; t 99.3 4.3E-12 1.5E-16 118.7 7.8 160 44-246 3-167 (184)
45 3d3q_A TRNA delta(2)-isopenten 99.3 6.7E-13 2.3E-17 137.2 2.3 151 43-215 7-163 (340)
46 3fb4_A Adenylate kinase; psych 99.3 2.1E-11 7.3E-16 116.9 12.7 36 45-83 2-37 (216)
47 3kb2_A SPBC2 prophage-derived 99.3 1.7E-11 5.8E-16 112.6 11.3 165 43-247 1-166 (173)
48 2pt5_A Shikimate kinase, SK; a 99.3 4.5E-12 1.5E-16 116.6 7.4 156 44-246 1-162 (168)
49 2rhm_A Putative kinase; P-loop 99.3 8.9E-12 3E-16 116.9 9.4 173 41-246 3-187 (193)
50 3dl0_A Adenylate kinase; phosp 99.3 1.2E-11 4.2E-16 118.7 10.3 36 45-83 2-37 (216)
51 3fdi_A Uncharacterized protein 99.2 3.4E-11 1.2E-15 115.6 12.4 182 43-247 6-198 (201)
52 1y63_A LMAJ004144AAA protein; 99.2 4.2E-11 1.4E-15 112.6 12.6 38 42-82 9-47 (184)
53 3trf_A Shikimate kinase, SK; a 99.2 3.4E-11 1.1E-15 112.6 11.5 161 43-247 5-174 (185)
54 3hdt_A Putative kinase; struct 99.2 6.5E-11 2.2E-15 115.7 13.8 76 166-248 138-219 (223)
55 3umf_A Adenylate kinase; rossm 99.2 7E-11 2.4E-15 115.0 14.0 170 39-247 25-213 (217)
56 3tlx_A Adenylate kinase 2; str 99.2 4.6E-11 1.6E-15 117.8 12.5 40 41-83 27-66 (243)
57 1knq_A Gluconate kinase; ALFA/ 99.2 2.2E-10 7.5E-15 106.1 16.0 160 42-246 7-172 (175)
58 3iij_A Coilin-interacting nucl 99.2 9.3E-11 3.2E-15 109.3 13.1 162 42-247 10-173 (180)
59 1via_A Shikimate kinase; struc 99.2 5.7E-11 1.9E-15 110.4 11.2 159 43-246 4-165 (175)
60 4eun_A Thermoresistant glucoki 99.2 1.9E-10 6.4E-15 109.5 14.6 158 42-246 28-192 (200)
61 3cm0_A Adenylate kinase; ATP-b 99.2 5E-11 1.7E-15 111.3 9.9 39 42-83 3-41 (186)
62 3nwj_A ATSK2; P loop, shikimat 99.2 3.9E-11 1.3E-15 119.3 8.7 111 43-185 48-162 (250)
63 1e6c_A Shikimate kinase; phosp 99.2 5.3E-11 1.8E-15 109.7 8.6 37 43-82 2-38 (173)
64 2jaq_A Deoxyguanosine kinase; 99.2 2.1E-11 7.3E-16 115.1 5.5 76 163-247 123-200 (205)
65 1zak_A Adenylate kinase; ATP:A 99.1 2.1E-10 7.2E-15 110.8 12.1 39 42-83 4-42 (222)
66 1ak2_A Adenylate kinase isoenz 99.1 3.7E-10 1.3E-14 110.1 13.4 51 29-83 3-53 (233)
67 2pbr_A DTMP kinase, thymidylat 99.1 2.3E-10 7.8E-15 107.1 10.4 33 44-79 1-36 (195)
68 1aky_A Adenylate kinase; ATP:A 99.1 7.9E-10 2.7E-14 106.5 13.3 39 42-83 3-41 (220)
69 1kag_A SKI, shikimate kinase I 99.1 1.7E-10 5.8E-15 106.4 7.7 159 43-246 4-171 (173)
70 1kht_A Adenylate kinase; phosp 99.1 6.6E-10 2.3E-14 103.6 11.4 38 43-83 3-45 (192)
71 1qhx_A CPT, protein (chloramph 99.1 4.1E-10 1.4E-14 104.4 9.9 39 43-82 3-41 (178)
72 3a4m_A L-seryl-tRNA(SEC) kinas 99.1 1.9E-09 6.5E-14 107.2 15.2 159 41-247 2-173 (260)
73 3sr0_A Adenylate kinase; phosp 99.1 2.7E-10 9.3E-15 109.9 8.4 36 44-82 1-36 (206)
74 2wwf_A Thymidilate kinase, put 99.0 8.1E-10 2.8E-14 105.1 11.6 33 40-72 7-39 (212)
75 3be4_A Adenylate kinase; malar 99.0 8.4E-10 2.9E-14 106.4 11.2 38 43-83 5-42 (217)
76 2xb4_A Adenylate kinase; ATP-b 99.0 1.7E-09 5.9E-14 104.8 13.3 37 44-83 1-37 (223)
77 1zd8_A GTP:AMP phosphotransfer 99.0 6.8E-10 2.3E-14 107.6 9.8 40 41-83 5-44 (227)
78 2qor_A Guanylate kinase; phosp 99.0 9.3E-10 3.2E-14 105.0 10.0 181 40-247 9-196 (204)
79 1e4v_A Adenylate kinase; trans 99.0 1.2E-09 4E-14 105.0 10.6 36 45-83 2-37 (214)
80 1nks_A Adenylate kinase; therm 99.0 1.5E-09 5E-14 101.3 10.4 40 43-82 1-42 (194)
81 2plr_A DTMP kinase, probable t 99.0 5.2E-09 1.8E-13 99.1 14.3 75 165-247 122-207 (213)
82 3gmt_A Adenylate kinase; ssgci 99.0 9.2E-10 3.1E-14 107.9 8.8 117 42-187 7-133 (230)
83 2z0h_A DTMP kinase, thymidylat 99.0 2.9E-09 9.9E-14 99.9 11.8 29 44-72 1-32 (197)
84 2vp4_A Deoxynucleoside kinase; 99.0 8.4E-11 2.9E-15 114.7 1.0 188 41-246 18-223 (230)
85 1nn5_A Similar to deoxythymidy 99.0 4.5E-09 1.5E-13 100.0 12.5 32 41-72 7-38 (215)
86 3tqc_A Pantothenate kinase; bi 98.9 1.2E-11 4E-16 127.3 -6.6 127 302-463 166-311 (321)
87 2vli_A Antibiotic resistance p 98.9 7E-09 2.4E-13 96.2 12.4 31 42-72 4-34 (183)
88 4eaq_A DTMP kinase, thymidylat 98.9 6.2E-08 2.1E-12 94.6 17.3 77 164-247 148-224 (229)
89 2pez_A Bifunctional 3'-phospho 98.8 2E-08 6.9E-13 93.3 12.5 38 42-80 4-44 (179)
90 3uie_A Adenylyl-sulfate kinase 98.8 2.4E-08 8.3E-13 94.8 12.9 41 42-82 24-66 (200)
91 2yvu_A Probable adenylyl-sulfa 98.8 5.3E-08 1.8E-12 91.0 14.0 40 42-81 12-53 (186)
92 1ly1_A Polynucleotide kinase; 98.8 2.4E-09 8.1E-14 98.9 4.6 37 43-82 2-39 (181)
93 1ltq_A Polynucleotide kinase; 98.8 5.8E-09 2E-13 105.0 6.0 153 43-228 2-168 (301)
94 2j41_A Guanylate kinase; GMP, 98.7 9.6E-09 3.3E-13 97.1 6.1 176 43-247 6-186 (207)
95 1m7g_A Adenylylsulfate kinase; 98.7 2.8E-08 9.5E-13 95.2 9.0 39 43-82 25-67 (211)
96 2gks_A Bifunctional SAT/APS ki 98.7 2.9E-08 1E-12 109.0 10.1 163 41-247 370-540 (546)
97 3tr0_A Guanylate kinase, GMP k 98.7 8E-08 2.7E-12 90.7 11.7 27 42-68 6-32 (205)
98 2v54_A DTMP kinase, thymidylat 98.7 7.3E-08 2.5E-12 90.9 11.2 31 42-72 3-34 (204)
99 1m8p_A Sulfate adenylyltransfe 98.7 1.2E-07 4.2E-12 104.6 14.3 41 41-82 394-438 (573)
100 1x6v_B Bifunctional 3'-phospho 98.7 1.6E-07 5.6E-12 104.2 15.0 161 42-248 51-223 (630)
101 2ze6_A Isopentenyl transferase 98.6 6.5E-08 2.2E-12 95.8 8.4 36 43-81 1-36 (253)
102 2ga8_A Hypothetical 39.9 kDa p 98.6 3.2E-09 1.1E-13 110.1 -1.8 101 307-456 235-347 (359)
103 3lv8_A DTMP kinase, thymidylat 98.6 5.2E-08 1.8E-12 95.8 6.6 75 164-247 154-228 (236)
104 2ocp_A DGK, deoxyguanosine kin 98.6 1.2E-07 4E-12 92.7 8.9 26 43-68 2-27 (241)
105 3a00_A Guanylate kinase, GMP k 98.5 7.1E-08 2.4E-12 90.6 6.2 25 44-68 2-26 (186)
106 3ch4_B Pmkase, phosphomevalona 98.5 1E-06 3.6E-11 84.4 13.0 170 43-247 11-192 (202)
107 3v9p_A DTMP kinase, thymidylat 98.5 8.5E-08 2.9E-12 93.8 5.4 75 164-246 151-225 (227)
108 3tau_A Guanylate kinase, GMP k 98.5 1.4E-07 4.6E-12 90.4 6.5 27 42-68 7-33 (208)
109 3ld9_A DTMP kinase, thymidylat 98.5 1.4E-07 4.6E-12 92.1 5.9 28 42-69 20-47 (223)
110 4edh_A DTMP kinase, thymidylat 98.4 8.2E-07 2.8E-11 85.8 10.7 76 164-247 131-206 (213)
111 3zvl_A Bifunctional polynucleo 98.4 3.9E-07 1.3E-11 96.7 9.0 38 40-80 255-292 (416)
112 2bbw_A Adenylate kinase 4, AK4 98.4 6.5E-07 2.2E-11 87.6 9.1 38 42-82 26-63 (246)
113 4tmk_A Protein (thymidylate ki 98.4 4.3E-07 1.5E-11 87.9 7.3 75 164-247 132-206 (213)
114 2p5t_B PEZT; postsegregational 98.4 7.4E-07 2.5E-11 87.9 8.7 41 41-82 30-70 (253)
115 1p5z_B DCK, deoxycytidine kina 98.4 7.6E-06 2.6E-10 80.8 15.7 28 41-68 22-49 (263)
116 1ex7_A Guanylate kinase; subst 98.3 6.5E-07 2.2E-11 84.8 7.5 24 45-68 3-26 (186)
117 1dek_A Deoxynucleoside monopho 98.3 1.9E-07 6.5E-12 92.1 3.9 29 43-71 1-29 (241)
118 1gtv_A TMK, thymidylate kinase 98.3 5.9E-09 2E-13 99.2 -6.8 27 44-70 1-27 (214)
119 3hjn_A DTMP kinase, thymidylat 98.3 2.2E-07 7.6E-12 88.7 3.9 71 165-248 122-192 (197)
120 1zp6_A Hypothetical protein AT 98.3 2.3E-06 7.9E-11 79.7 10.1 40 42-82 8-47 (191)
121 1gvn_B Zeta; postsegregational 98.3 1.1E-06 3.6E-11 88.8 8.2 42 41-83 31-72 (287)
122 4hlc_A DTMP kinase, thymidylat 98.3 1.7E-06 5.8E-11 83.1 9.0 76 165-247 125-200 (205)
123 2bdt_A BH3686; alpha-beta prot 98.3 2.8E-06 9.6E-11 79.3 9.5 37 44-82 3-39 (189)
124 3tmk_A Thymidylate kinase; pho 98.2 1.7E-06 5.7E-11 83.9 7.1 186 42-247 4-202 (216)
125 1kgd_A CASK, peripheral plasma 98.2 2.9E-06 9.9E-11 79.1 7.7 25 44-68 6-30 (180)
126 3lnc_A Guanylate kinase, GMP k 98.2 3.1E-06 1.1E-10 81.8 8.2 25 43-67 27-52 (231)
127 3cr8_A Sulfate adenylyltranfer 98.2 5.3E-06 1.8E-10 91.1 10.7 40 42-81 368-410 (552)
128 3a8t_A Adenylate isopentenyltr 98.1 1.5E-06 5E-11 89.7 5.2 40 42-84 39-80 (339)
129 1a7j_A Phosphoribulokinase; tr 98.1 2E-07 6.8E-12 94.3 -1.9 81 302-409 86-179 (290)
130 2axn_A 6-phosphofructo-2-kinas 98.1 6.6E-06 2.2E-10 89.8 8.7 42 41-82 33-76 (520)
131 1odf_A YGR205W, hypothetical 3 97.9 2.4E-06 8.3E-11 86.4 1.9 96 307-409 124-240 (290)
132 1bif_A 6-phosphofructo-2-kinas 97.8 7.4E-05 2.5E-09 80.3 10.3 32 41-72 37-68 (469)
133 1sq5_A Pantothenate kinase; P- 97.8 5.7E-06 2E-10 84.1 1.4 77 302-405 154-242 (308)
134 3dmp_A Uracil phosphoribosyltr 97.7 1E-06 3.5E-11 85.4 -5.0 54 250-304 108-163 (217)
135 3c8u_A Fructokinase; YP_612366 97.6 1.5E-06 5E-11 83.0 -5.0 83 302-409 94-178 (208)
136 1uj2_A Uridine-cytidine kinase 97.6 1.9E-05 6.4E-10 77.6 2.2 78 303-407 103-180 (252)
137 3ney_A 55 kDa erythrocyte memb 97.6 0.0005 1.7E-08 65.5 12.0 26 43-68 19-44 (197)
138 1p6x_A Thymidine kinase; P-loo 97.6 2.6E-05 9E-10 80.3 2.9 30 41-70 5-34 (334)
139 1lvg_A Guanylate kinase, GMP k 97.5 0.00073 2.5E-08 63.8 12.6 26 43-68 4-29 (198)
140 1bd3_D Uprtase, uracil phospho 97.5 2.2E-06 7.5E-11 84.4 -5.8 56 249-304 132-190 (243)
141 3exa_A TRNA delta(2)-isopenten 97.5 4.9E-05 1.7E-09 77.6 3.7 39 43-84 3-43 (322)
142 1s96_A Guanylate kinase, GMP k 97.5 0.001 3.5E-08 64.2 12.8 29 40-68 13-41 (219)
143 1z6g_A Guanylate kinase; struc 97.5 0.00074 2.5E-08 64.8 11.5 25 43-67 23-47 (218)
144 3crm_A TRNA delta(2)-isopenten 97.4 9.2E-05 3.1E-09 75.9 4.0 35 43-80 5-39 (323)
145 3foz_A TRNA delta(2)-isopenten 97.4 0.0001 3.5E-09 75.0 4.3 40 42-84 9-50 (316)
146 3eph_A TRNA isopentenyltransfe 97.3 0.00011 3.7E-09 77.5 3.6 40 43-85 2-43 (409)
147 3asz_A Uridine kinase; cytidin 97.2 2.1E-05 7.1E-10 74.5 -3.1 78 303-407 77-154 (211)
148 1v9s_A Uracil phosphoribosyltr 97.1 2.4E-05 8.1E-10 75.3 -3.7 32 267-298 120-151 (208)
149 2jeo_A Uridine-cytidine kinase 97.0 4.7E-05 1.6E-09 74.4 -2.1 78 304-409 107-184 (245)
150 1xtt_A Probable uracil phospho 97.0 1.1E-05 3.8E-10 78.1 -6.7 40 259-299 118-161 (216)
151 1g8f_A Sulfate adenylyltransfe 97.0 0.00047 1.6E-08 74.9 4.6 38 42-79 394-435 (511)
152 1osn_A Thymidine kinase, VZV-T 97.0 0.0011 3.8E-08 68.3 7.1 29 42-70 11-40 (341)
153 1rz3_A Hypothetical protein rb 96.9 0.00033 1.1E-08 66.1 2.7 70 302-399 96-165 (201)
154 3hws_A ATP-dependent CLP prote 96.9 0.0025 8.7E-08 65.6 9.6 32 43-74 51-82 (363)
155 2ehj_A Uracil phosphoribosyltr 96.9 2.7E-05 9.1E-10 75.0 -5.4 44 255-298 105-151 (208)
156 1o5o_A Uracil phosphoribosyltr 96.7 4.3E-05 1.5E-09 74.2 -5.6 32 267-298 133-164 (221)
157 1xjc_A MOBB protein homolog; s 96.7 0.0009 3.1E-08 62.2 3.5 26 42-67 3-28 (169)
158 3czq_A Putative polyphosphate 96.7 0.00045 1.5E-08 70.0 1.4 35 41-75 84-118 (304)
159 4b4t_J 26S protease regulatory 96.6 0.00094 3.2E-08 70.3 3.8 35 45-80 184-218 (405)
160 3aez_A Pantothenate kinase; tr 96.5 0.00045 1.5E-08 70.4 0.6 73 305-404 167-244 (312)
161 3dm5_A SRP54, signal recogniti 96.5 0.0077 2.6E-07 64.1 10.0 40 42-81 99-140 (443)
162 3t15_A Ribulose bisphosphate c 96.5 0.0019 6.5E-08 64.8 5.1 39 41-80 34-72 (293)
163 2e55_A Uracil phosphoribosyltr 96.5 6.3E-05 2.2E-09 72.3 -5.9 43 256-298 105-149 (208)
164 3eie_A Vacuolar protein sortin 96.5 0.011 3.9E-07 59.7 10.4 37 43-80 51-87 (322)
165 1d2n_A N-ethylmaleimide-sensit 96.4 0.0032 1.1E-07 61.9 5.7 39 42-80 63-101 (272)
166 1ye8_A Protein THEP1, hypothet 96.4 0.0016 5.5E-08 60.7 3.2 24 45-68 2-25 (178)
167 1znw_A Guanylate kinase, GMP k 96.3 0.0021 7.3E-08 60.7 3.7 26 43-68 20-45 (207)
168 1np6_A Molybdopterin-guanine d 96.3 0.0022 7.6E-08 59.7 3.7 25 43-67 6-30 (174)
169 4b4t_M 26S protease regulatory 96.2 0.0018 6E-08 69.0 3.0 37 43-80 215-251 (434)
170 1lv7_A FTSH; alpha/beta domain 96.2 0.0032 1.1E-07 61.3 4.6 36 44-80 46-81 (257)
171 2qmh_A HPR kinase/phosphorylas 96.2 0.0024 8.1E-08 61.0 3.3 34 43-80 34-67 (205)
172 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0048 1.6E-07 59.7 5.4 37 43-80 39-75 (262)
173 3pfi_A Holliday junction ATP-d 96.1 0.023 8E-07 57.3 10.6 30 44-73 56-85 (338)
174 4gp7_A Metallophosphoesterase; 96.1 0.0032 1.1E-07 57.8 3.7 22 43-64 9-30 (171)
175 2f1r_A Molybdopterin-guanine d 96.1 0.0018 6.3E-08 60.0 2.0 25 44-68 3-27 (171)
176 3n70_A Transport activator; si 96.0 0.0082 2.8E-07 53.4 5.9 68 46-115 27-98 (145)
177 3h4m_A Proteasome-activating n 96.0 0.0054 1.8E-07 60.4 5.0 37 43-80 51-87 (285)
178 3syl_A Protein CBBX; photosynt 96.0 0.024 8.2E-07 56.3 9.7 26 43-68 67-92 (309)
179 1htw_A HI0065; nucleotide-bind 96.0 0.0043 1.5E-07 56.7 3.8 26 43-68 33-58 (158)
180 1c9k_A COBU, adenosylcobinamid 96.0 0.003 1E-07 59.2 2.7 27 45-72 1-27 (180)
181 1ixz_A ATP-dependent metallopr 95.9 0.0058 2E-07 59.3 4.7 34 46-80 52-85 (254)
182 3ec2_A DNA replication protein 95.9 0.0037 1.3E-07 57.4 3.1 25 43-67 38-62 (180)
183 2yhs_A FTSY, cell division pro 95.9 0.021 7.1E-07 61.6 9.3 40 41-80 291-332 (503)
184 1vma_A Cell division protein F 95.9 0.0078 2.7E-07 61.0 5.6 40 41-80 102-143 (306)
185 2x8a_A Nuclear valosin-contain 95.8 0.0056 1.9E-07 60.8 4.2 33 46-79 47-79 (274)
186 3cf0_A Transitional endoplasmi 95.8 0.0064 2.2E-07 61.0 4.5 37 43-80 49-85 (301)
187 3vfd_A Spastin; ATPase, microt 95.8 0.023 7.8E-07 59.0 8.8 32 43-74 148-179 (389)
188 1rj9_A FTSY, signal recognitio 95.7 0.0061 2.1E-07 61.7 4.0 27 42-68 101-127 (304)
189 3co5_A Putative two-component 95.7 0.0035 1.2E-07 55.7 1.9 68 46-115 30-97 (143)
190 3b9p_A CG5977-PA, isoform A; A 95.7 0.0083 2.8E-07 59.5 4.8 31 43-73 54-84 (297)
191 1ofh_A ATP-dependent HSL prote 95.7 0.0086 2.9E-07 59.3 4.9 36 44-80 51-86 (310)
192 4a74_A DNA repair and recombin 95.7 0.0063 2.1E-07 57.5 3.7 26 43-68 25-50 (231)
193 1jbk_A CLPB protein; beta barr 95.7 0.012 4E-07 53.1 5.4 25 43-67 43-67 (195)
194 4b4t_H 26S protease regulatory 95.6 0.0033 1.1E-07 67.2 1.8 37 43-80 243-279 (467)
195 2eyu_A Twitching motility prot 95.6 0.0061 2.1E-07 60.3 3.6 26 43-68 25-50 (261)
196 3czp_A Putative polyphosphate 95.6 0.011 3.9E-07 63.8 6.1 36 41-76 41-76 (500)
197 3tif_A Uncharacterized ABC tra 95.6 0.0049 1.7E-07 59.9 2.9 24 44-67 32-55 (235)
198 1iy2_A ATP-dependent metallopr 95.6 0.0088 3E-07 59.0 4.7 28 46-73 76-103 (278)
199 2ehv_A Hypothetical protein PH 95.6 0.006 2.1E-07 58.4 3.4 23 43-65 30-52 (251)
200 3rhf_A Putative polyphosphate 95.6 0.075 2.6E-06 53.2 11.3 35 42-76 74-108 (289)
201 3e70_C DPA, signal recognition 95.6 0.0085 2.9E-07 61.3 4.4 27 41-67 127-153 (328)
202 4b4t_L 26S protease subunit RP 95.5 0.015 5E-07 61.9 6.3 36 44-80 216-251 (437)
203 2px0_A Flagellar biosynthesis 95.5 0.0061 2.1E-07 61.4 3.2 39 42-80 104-145 (296)
204 2pcj_A ABC transporter, lipopr 95.5 0.0061 2.1E-07 58.8 2.8 24 44-67 31-54 (224)
205 3p32_A Probable GTPase RV1496/ 95.4 0.014 4.7E-07 60.2 5.4 37 41-78 77-116 (355)
206 1in4_A RUVB, holliday junction 95.4 0.009 3.1E-07 60.9 4.0 28 44-71 52-79 (334)
207 1kjw_A Postsynaptic density pr 95.4 0.085 2.9E-06 53.1 11.1 126 43-185 105-235 (295)
208 2i3b_A HCR-ntpase, human cance 95.4 0.0076 2.6E-07 56.7 3.1 23 45-67 3-25 (189)
209 3b9q_A Chloroplast SRP recepto 95.4 0.01 3.5E-07 60.0 4.2 26 42-67 99-124 (302)
210 2onk_A Molybdate/tungstate ABC 95.3 0.0082 2.8E-07 58.6 3.4 24 44-67 25-48 (240)
211 1nij_A Hypothetical protein YJ 95.3 0.01 3.4E-07 60.3 4.1 26 42-67 3-28 (318)
212 1yrb_A ATP(GTP)binding protein 95.3 0.017 5.9E-07 55.9 5.6 38 41-79 12-51 (262)
213 1um8_A ATP-dependent CLP prote 95.3 0.012 4E-07 60.8 4.7 30 44-73 73-102 (376)
214 2kjq_A DNAA-related protein; s 95.3 0.0068 2.3E-07 54.6 2.5 24 44-67 37-60 (149)
215 4g1u_C Hemin import ATP-bindin 95.3 0.0074 2.5E-07 59.9 2.8 24 44-67 38-61 (266)
216 2p65_A Hypothetical protein PF 95.3 0.011 3.7E-07 53.4 3.8 25 43-67 43-67 (187)
217 3gfo_A Cobalt import ATP-bindi 95.3 0.0074 2.5E-07 60.2 2.8 24 44-67 35-58 (275)
218 3kl4_A SRP54, signal recogniti 95.3 0.012 4.2E-07 62.5 4.6 38 42-80 96-136 (433)
219 3czp_A Putative polyphosphate 95.3 0.065 2.2E-06 57.9 10.3 34 41-74 298-331 (500)
220 2cbz_A Multidrug resistance-as 95.3 0.0078 2.7E-07 58.6 2.9 23 44-66 32-54 (237)
221 3bos_A Putative DNA replicatio 95.2 0.011 3.7E-07 55.9 3.8 39 43-81 52-92 (242)
222 2r62_A Cell division protease 95.2 0.005 1.7E-07 60.1 1.3 27 46-72 47-73 (268)
223 3sop_A Neuronal-specific septi 95.2 0.011 3.9E-07 58.6 3.9 24 44-67 3-26 (270)
224 2v9p_A Replication protein E1; 95.2 0.01 3.6E-07 60.1 3.6 25 43-67 126-150 (305)
225 1zu4_A FTSY; GTPase, signal re 95.2 0.016 5.6E-07 59.0 5.1 40 41-80 103-144 (320)
226 2w0m_A SSO2452; RECA, SSPF, un 95.2 0.011 3.8E-07 55.6 3.7 24 44-67 24-47 (235)
227 1l8q_A Chromosomal replication 95.2 0.014 4.8E-07 58.8 4.6 37 44-81 38-77 (324)
228 2d2e_A SUFC protein; ABC-ATPas 95.2 0.01 3.4E-07 58.2 3.4 23 44-66 30-52 (250)
229 3b85_A Phosphate starvation-in 95.2 0.0079 2.7E-07 57.5 2.5 23 44-66 23-45 (208)
230 2ff7_A Alpha-hemolysin translo 95.2 0.0087 3E-07 58.6 2.9 24 44-67 36-59 (247)
231 1b0u_A Histidine permease; ABC 95.1 0.0087 3E-07 59.2 2.8 25 43-67 32-56 (262)
232 1mv5_A LMRA, multidrug resista 95.1 0.0088 3E-07 58.3 2.8 25 43-67 28-52 (243)
233 1svm_A Large T antigen; AAA+ f 95.1 0.012 4.1E-07 61.4 4.0 28 43-70 169-196 (377)
234 2wsm_A Hydrogenase expression/ 95.1 0.02 7E-07 53.8 5.2 37 42-78 29-66 (221)
235 1g6h_A High-affinity branched- 95.1 0.0094 3.2E-07 58.7 2.9 24 44-67 34-57 (257)
236 1ji0_A ABC transporter; ATP bi 95.1 0.0096 3.3E-07 58.0 2.9 24 44-67 33-56 (240)
237 1g41_A Heat shock protein HSLU 95.1 0.016 5.3E-07 61.8 4.7 30 44-73 51-80 (444)
238 2pze_A Cystic fibrosis transme 95.1 0.0097 3.3E-07 57.5 2.8 24 44-67 35-58 (229)
239 2og2_A Putative signal recogni 95.0 0.014 5E-07 60.4 4.2 27 41-67 155-181 (359)
240 2zu0_C Probable ATP-dependent 95.0 0.012 4E-07 58.4 3.4 23 44-66 47-69 (267)
241 4b4t_K 26S protease regulatory 95.0 0.025 8.5E-07 60.0 6.0 37 43-80 206-242 (428)
242 2olj_A Amino acid ABC transpor 95.0 0.01 3.5E-07 58.8 2.8 25 43-67 50-74 (263)
243 1lw7_A Transcriptional regulat 95.0 0.013 4.3E-07 60.6 3.6 27 43-69 170-196 (365)
244 2ghi_A Transport protein; mult 95.0 0.011 3.6E-07 58.5 2.9 24 44-67 47-70 (260)
245 3d8b_A Fidgetin-like protein 1 94.9 0.019 6.6E-07 59.0 4.9 37 43-80 117-153 (357)
246 2ixe_A Antigen peptide transpo 94.9 0.011 3.7E-07 58.8 2.9 25 43-67 45-69 (271)
247 1sgw_A Putative ABC transporte 94.9 0.0091 3.1E-07 57.3 2.3 24 44-67 36-59 (214)
248 2qp9_X Vacuolar protein sortin 94.9 0.015 5.2E-07 59.8 4.1 36 44-80 85-120 (355)
249 1vpl_A ABC transporter, ATP-bi 94.9 0.011 3.7E-07 58.3 2.8 24 44-67 42-65 (256)
250 2w58_A DNAI, primosome compone 94.9 0.015 5E-07 54.2 3.6 24 44-67 55-78 (202)
251 2xxa_A Signal recognition part 94.9 0.014 4.9E-07 61.9 3.9 41 41-81 98-141 (433)
252 1i5e_A Uracil phosphoribosyltr 94.9 0.0052 1.8E-07 58.9 0.4 32 268-299 122-153 (209)
253 3jvv_A Twitching mobility prot 94.9 0.014 4.8E-07 60.4 3.7 26 43-68 123-148 (356)
254 2j37_W Signal recognition part 94.9 0.02 6.7E-07 62.1 4.9 39 41-80 99-140 (504)
255 1of1_A Thymidine kinase; trans 94.9 0.012 4.1E-07 61.3 3.1 31 41-71 47-77 (376)
256 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.021 7.3E-07 57.9 4.9 29 44-72 46-75 (322)
257 2yz2_A Putative ABC transporte 94.9 0.012 4E-07 58.3 2.9 24 44-67 34-57 (266)
258 2p5s_A RAS and EF-hand domain 94.8 0.018 6.1E-07 53.3 3.9 40 27-66 12-51 (199)
259 2qi9_C Vitamin B12 import ATP- 94.8 0.012 4.2E-07 57.7 2.8 24 44-67 27-50 (249)
260 2cvh_A DNA repair and recombin 94.8 0.015 5.2E-07 54.5 3.4 35 43-78 20-54 (220)
261 2ihy_A ABC transporter, ATP-bi 94.8 0.012 4.2E-07 58.7 2.8 24 44-67 48-71 (279)
262 3tqf_A HPR(Ser) kinase; transf 94.7 0.014 4.8E-07 54.4 2.8 26 44-70 17-42 (181)
263 2hf9_A Probable hydrogenase ni 94.7 0.03 1E-06 52.7 5.4 37 42-78 37-74 (226)
264 2nq2_C Hypothetical ABC transp 94.7 0.013 4.4E-07 57.6 2.8 24 44-67 32-55 (253)
265 1njg_A DNA polymerase III subu 94.7 0.017 5.9E-07 53.9 3.4 26 44-69 46-71 (250)
266 4b4t_I 26S protease regulatory 94.7 0.032 1.1E-06 59.1 5.8 49 30-80 204-252 (437)
267 1r6b_X CLPA protein; AAA+, N-t 94.7 0.061 2.1E-06 60.8 8.5 36 44-80 489-524 (758)
268 2ce7_A Cell division protein F 94.6 0.026 8.8E-07 60.7 5.1 36 45-81 51-86 (476)
269 3fvq_A Fe(3+) IONS import ATP- 94.6 0.016 5.5E-07 60.0 3.4 25 44-68 31-55 (359)
270 2c9o_A RUVB-like 1; hexameric 94.6 0.031 1.1E-06 59.4 5.6 31 44-74 64-96 (456)
271 1e2k_A Thymidine kinase; trans 94.6 0.013 4.5E-07 60.0 2.6 29 43-71 4-32 (331)
272 2wjg_A FEOB, ferrous iron tran 94.6 0.024 8.1E-07 51.5 4.1 24 42-65 6-29 (188)
273 2gza_A Type IV secretion syste 94.6 0.012 4.1E-07 60.9 2.2 25 44-68 176-200 (361)
274 3pxi_A Negative regulator of g 94.6 0.083 2.8E-06 59.8 9.3 75 45-120 523-606 (758)
275 1hqc_A RUVB; extended AAA-ATPa 94.5 0.018 6.3E-07 57.4 3.5 29 44-72 39-67 (324)
276 2pjz_A Hypothetical protein ST 94.5 0.016 5.3E-07 57.5 2.8 24 44-67 31-54 (263)
277 1n0w_A DNA repair protein RAD5 94.5 0.019 6.5E-07 54.7 3.4 24 43-66 24-47 (243)
278 2ewv_A Twitching motility prot 94.5 0.023 7.8E-07 59.1 4.2 27 42-68 135-161 (372)
279 3kta_A Chromosome segregation 94.5 0.024 8.2E-07 51.8 3.8 24 45-68 28-51 (182)
280 3tui_C Methionine import ATP-b 94.5 0.018 6.3E-07 59.8 3.4 24 44-67 55-78 (366)
281 3nh6_A ATP-binding cassette SU 94.5 0.012 4.1E-07 59.6 1.9 24 44-67 81-104 (306)
282 1cr0_A DNA primase/helicase; R 94.5 0.021 7.1E-07 56.8 3.6 25 43-67 35-59 (296)
283 1oix_A RAS-related protein RAB 94.4 0.024 8.1E-07 52.4 3.6 25 42-66 28-52 (191)
284 2qby_A CDC6 homolog 1, cell di 94.4 0.024 8.1E-07 57.5 3.8 26 42-67 44-69 (386)
285 2h17_A ADP-ribosylation factor 94.3 0.023 7.9E-07 51.6 3.4 26 40-65 18-43 (181)
286 2qby_B CDC6 homolog 3, cell di 94.3 0.031 1.1E-06 57.0 4.8 25 43-67 45-69 (384)
287 2chg_A Replication factor C sm 94.3 0.023 7.9E-07 52.5 3.4 23 46-68 41-63 (226)
288 3rlf_A Maltose/maltodextrin im 94.3 0.021 7E-07 59.7 3.4 25 44-68 30-54 (381)
289 2v3c_C SRP54, signal recogniti 94.3 0.014 4.7E-07 62.1 2.0 40 42-81 98-139 (432)
290 1p9r_A General secretion pathw 94.3 0.023 8E-07 60.0 3.8 27 43-69 167-193 (418)
291 3cf2_A TER ATPase, transitiona 94.3 0.018 6.3E-07 65.6 3.2 36 43-79 511-546 (806)
292 2dhr_A FTSH; AAA+ protein, hex 94.3 0.035 1.2E-06 60.1 5.2 35 46-81 67-101 (499)
293 1z47_A CYSA, putative ABC-tran 94.3 0.021 7.3E-07 59.0 3.4 24 44-67 42-65 (355)
294 2yyz_A Sugar ABC transporter, 94.3 0.022 7.5E-07 59.0 3.4 24 44-67 30-53 (359)
295 2it1_A 362AA long hypothetical 94.2 0.023 7.7E-07 59.0 3.4 25 44-68 30-54 (362)
296 2v1u_A Cell division control p 94.2 0.024 8.2E-07 57.6 3.5 26 42-67 43-68 (387)
297 3m6a_A ATP-dependent protease 94.2 0.03 1E-06 61.1 4.5 31 43-73 108-138 (543)
298 1sxj_A Activator 1 95 kDa subu 94.2 0.031 1.1E-06 60.5 4.5 30 43-72 77-106 (516)
299 2bbs_A Cystic fibrosis transme 94.2 0.02 7E-07 57.4 2.8 24 44-67 65-88 (290)
300 1v43_A Sugar-binding transport 94.2 0.024 8.1E-07 59.1 3.4 24 44-67 38-61 (372)
301 1ls1_A Signal recognition part 94.1 0.044 1.5E-06 55.0 5.2 39 42-80 97-137 (295)
302 1g29_1 MALK, maltose transport 94.1 0.024 8.2E-07 59.0 3.4 24 44-67 30-53 (372)
303 1fnn_A CDC6P, cell division co 94.1 0.039 1.3E-06 56.2 4.8 25 44-68 45-69 (389)
304 2qm8_A GTPase/ATPase; G protei 94.1 0.034 1.1E-06 57.0 4.3 26 42-67 54-79 (337)
305 2hxs_A RAB-26, RAS-related pro 94.0 0.037 1.3E-06 49.5 4.1 26 40-65 3-28 (178)
306 2dr3_A UPF0273 protein PH0284; 94.0 0.03 1E-06 53.3 3.6 25 43-67 23-47 (247)
307 2r44_A Uncharacterized protein 94.0 0.03 1E-06 56.4 3.8 30 45-74 48-77 (331)
308 3d31_A Sulfate/molybdate ABC t 94.0 0.02 7E-07 59.0 2.5 24 44-67 27-50 (348)
309 4fcw_A Chaperone protein CLPB; 94.0 0.039 1.3E-06 54.7 4.5 25 44-68 48-72 (311)
310 2r2a_A Uncharacterized protein 94.0 0.033 1.1E-06 52.8 3.6 26 42-67 4-29 (199)
311 3gd7_A Fusion complex of cysti 94.0 0.027 9.3E-07 59.0 3.4 24 44-67 48-71 (390)
312 4gzl_A RAS-related C3 botulinu 93.9 0.036 1.2E-06 51.7 3.9 25 41-65 28-52 (204)
313 3uk6_A RUVB-like 2; hexameric 93.9 0.059 2E-06 54.8 5.8 29 44-72 71-101 (368)
314 2ffh_A Protein (FFH); SRP54, s 93.9 0.045 1.6E-06 57.9 5.0 39 42-80 97-137 (425)
315 1z08_A RAS-related protein RAB 93.9 0.032 1.1E-06 49.5 3.3 26 41-66 4-29 (170)
316 2pt7_A CAG-ALFA; ATPase, prote 93.9 0.017 5.8E-07 59.1 1.6 25 44-68 172-196 (330)
317 2fv8_A H6, RHO-related GTP-bin 93.9 0.027 9.4E-07 52.4 3.0 38 28-65 9-47 (207)
318 2www_A Methylmalonic aciduria 93.9 0.037 1.3E-06 56.9 4.2 26 42-67 73-98 (349)
319 3con_A GTPase NRAS; structural 93.9 0.032 1.1E-06 50.8 3.3 25 42-66 20-44 (190)
320 3d3q_A TRNA delta(2)-isopenten 93.8 0.0028 9.6E-08 65.2 -4.3 99 303-456 69-173 (340)
321 2gf9_A RAS-related protein RAB 93.8 0.041 1.4E-06 50.2 4.0 35 31-66 11-45 (189)
322 1z2a_A RAS-related protein RAB 93.8 0.039 1.3E-06 48.7 3.7 25 42-66 4-28 (168)
323 1ky3_A GTP-binding protein YPT 93.8 0.038 1.3E-06 49.4 3.7 26 41-66 6-31 (182)
324 1gwn_A RHO-related GTP-binding 93.8 0.037 1.3E-06 51.9 3.7 35 30-66 17-51 (205)
325 1nlf_A Regulatory protein REPA 93.8 0.035 1.2E-06 54.7 3.6 25 43-67 30-54 (279)
326 1oxx_K GLCV, glucose, ABC tran 93.8 0.02 6.9E-07 59.1 1.9 24 44-67 32-55 (353)
327 3pvs_A Replication-associated 93.8 0.039 1.3E-06 58.8 4.2 30 44-73 51-80 (447)
328 3u61_B DNA polymerase accessor 93.7 0.036 1.2E-06 55.6 3.7 30 43-72 48-77 (324)
329 1j8m_F SRP54, signal recogniti 93.7 0.041 1.4E-06 55.4 4.0 38 43-80 98-137 (297)
330 2f9l_A RAB11B, member RAS onco 93.7 0.041 1.4E-06 50.9 3.8 24 43-66 5-28 (199)
331 1tue_A Replication protein E1; 93.7 0.03 1E-06 53.6 2.8 25 44-68 59-83 (212)
332 3c5c_A RAS-like protein 12; GD 93.7 0.04 1.4E-06 50.5 3.7 26 41-66 19-44 (187)
333 2z4s_A Chromosomal replication 93.7 0.046 1.6E-06 58.0 4.5 37 43-80 130-171 (440)
334 1upt_A ARL1, ADP-ribosylation 93.6 0.055 1.9E-06 47.9 4.4 26 40-65 4-29 (171)
335 2fn4_A P23, RAS-related protei 93.6 0.049 1.7E-06 48.7 4.1 25 42-66 8-32 (181)
336 3shw_A Tight junction protein 93.6 0.16 5.4E-06 54.4 8.6 25 41-68 222-246 (468)
337 2wji_A Ferrous iron transport 93.6 0.041 1.4E-06 49.3 3.5 23 43-65 3-25 (165)
338 1r2q_A RAS-related protein RAB 93.6 0.032 1.1E-06 49.3 2.7 24 42-65 5-28 (170)
339 2dyk_A GTP-binding protein; GT 93.6 0.048 1.6E-06 47.8 3.9 23 44-66 2-24 (161)
340 2ged_A SR-beta, signal recogni 93.6 0.044 1.5E-06 50.0 3.7 26 41-66 46-71 (193)
341 3end_A Light-independent proto 93.6 0.065 2.2E-06 53.4 5.3 39 40-79 38-79 (307)
342 3tvt_A Disks large 1 tumor sup 93.6 0.22 7.4E-06 50.1 9.0 67 164-246 209-275 (292)
343 2npi_A Protein CLP1; CLP1-PCF1 93.6 0.029 9.9E-07 60.0 2.8 24 44-67 139-162 (460)
344 1z0j_A RAB-22, RAS-related pro 93.5 0.038 1.3E-06 48.8 3.1 25 42-66 5-29 (170)
345 2ce2_X GTPase HRAS; signaling 93.5 0.046 1.6E-06 47.8 3.7 24 43-66 3-26 (166)
346 3hu3_A Transitional endoplasmi 93.5 0.05 1.7E-06 58.6 4.6 37 43-80 238-274 (489)
347 2bjv_A PSP operon transcriptio 93.5 0.048 1.7E-06 53.0 4.1 35 45-80 31-68 (265)
348 2zan_A Vacuolar protein sortin 93.5 0.055 1.9E-06 57.4 4.9 37 43-80 167-204 (444)
349 1cp2_A CP2, nitrogenase iron p 93.5 0.065 2.2E-06 52.1 5.0 38 43-80 1-40 (269)
350 3cf2_A TER ATPase, transitiona 93.5 0.041 1.4E-06 62.8 4.0 37 43-80 238-274 (806)
351 2afh_E Nitrogenase iron protei 93.4 0.068 2.3E-06 52.8 5.1 37 43-80 2-41 (289)
352 1u8z_A RAS-related protein RAL 93.4 0.057 2E-06 47.4 4.0 24 43-66 4-27 (168)
353 3clv_A RAB5 protein, putative; 93.4 0.065 2.2E-06 48.6 4.4 26 41-66 5-30 (208)
354 1kao_A RAP2A; GTP-binding prot 93.3 0.054 1.9E-06 47.5 3.7 24 43-66 3-26 (167)
355 1pui_A ENGB, probable GTP-bind 93.3 0.032 1.1E-06 51.8 2.2 23 42-64 25-47 (210)
356 1sxj_E Activator 1 40 kDa subu 93.3 0.043 1.5E-06 55.5 3.4 23 46-68 39-61 (354)
357 3fwy_A Light-independent proto 93.2 0.077 2.6E-06 53.8 5.2 37 42-79 47-86 (314)
358 3kjh_A CO dehydrogenase/acetyl 93.2 0.049 1.7E-06 51.8 3.5 35 45-79 2-38 (254)
359 2oap_1 GSPE-2, type II secreti 93.1 0.031 1.1E-06 60.6 2.1 25 43-67 260-284 (511)
360 1pzn_A RAD51, DNA repair and r 93.1 0.053 1.8E-06 55.7 3.7 26 42-67 130-155 (349)
361 2p67_A LAO/AO transport system 93.0 0.064 2.2E-06 54.8 4.2 37 42-79 55-94 (341)
362 2y8e_A RAB-protein 6, GH09086P 93.0 0.054 1.9E-06 48.3 3.3 23 43-65 14-36 (179)
363 3bc1_A RAS-related protein RAB 93.0 0.061 2.1E-06 48.5 3.7 24 42-65 10-33 (195)
364 2bme_A RAB4A, RAS-related prot 93.0 0.064 2.2E-06 48.4 3.8 26 41-66 8-33 (186)
365 1tq4_A IIGP1, interferon-induc 93.0 0.057 2E-06 57.0 3.8 25 43-67 69-93 (413)
366 1ypw_A Transitional endoplasmi 92.9 0.049 1.7E-06 62.3 3.5 36 43-79 238-273 (806)
367 1sxj_C Activator 1 40 kDa subu 92.9 0.053 1.8E-06 55.0 3.4 23 46-68 49-71 (340)
368 1zd9_A ADP-ribosylation factor 92.9 0.06 2E-06 49.2 3.5 24 42-65 21-44 (188)
369 3tw8_B RAS-related protein RAB 92.9 0.054 1.8E-06 48.4 3.1 24 41-64 7-30 (181)
370 1vg8_A RAS-related protein RAB 92.9 0.063 2.2E-06 49.4 3.7 26 41-66 6-31 (207)
371 2lkc_A Translation initiation 92.9 0.066 2.3E-06 47.8 3.7 25 41-65 6-30 (178)
372 2h57_A ADP-ribosylation factor 92.9 0.052 1.8E-06 49.5 3.0 24 42-65 20-43 (190)
373 3qxc_A Dethiobiotin synthetase 92.9 0.32 1.1E-05 47.4 8.8 25 43-67 21-46 (242)
374 2gj8_A MNME, tRNA modification 92.8 0.067 2.3E-06 48.4 3.7 24 43-66 4-27 (172)
375 2a5j_A RAS-related protein RAB 92.8 0.084 2.9E-06 48.2 4.4 25 42-66 20-44 (191)
376 1c1y_A RAS-related protein RAP 92.8 0.07 2.4E-06 46.9 3.7 23 43-65 3-25 (167)
377 3dz8_A RAS-related protein RAB 92.8 0.075 2.6E-06 48.6 4.0 25 43-67 23-47 (191)
378 2xkx_A Disks large homolog 4; 92.8 0.27 9.3E-06 55.4 9.4 171 43-246 531-706 (721)
379 3lda_A DNA repair protein RAD5 92.8 0.081 2.8E-06 55.6 4.7 25 43-67 178-202 (400)
380 2yv5_A YJEQ protein; hydrolase 92.8 0.056 1.9E-06 54.4 3.4 23 44-67 166-188 (302)
381 2nzj_A GTP-binding protein REM 92.8 0.068 2.3E-06 47.5 3.6 24 42-65 3-26 (175)
382 1svi_A GTP-binding protein YSX 92.8 0.07 2.4E-06 48.6 3.8 24 42-65 22-45 (195)
383 1g16_A RAS-related protein SEC 92.8 0.071 2.4E-06 47.1 3.7 23 43-65 3-25 (170)
384 3reg_A RHO-like small GTPase; 92.7 0.062 2.1E-06 49.2 3.3 27 40-66 20-46 (194)
385 2hup_A RAS-related protein RAB 92.7 0.063 2.2E-06 49.8 3.4 26 41-66 27-52 (201)
386 1nrj_B SR-beta, signal recogni 92.7 0.072 2.5E-06 49.7 3.8 27 41-67 10-36 (218)
387 2erx_A GTP-binding protein DI- 92.6 0.071 2.4E-06 47.1 3.5 23 43-65 3-25 (172)
388 2orw_A Thymidine kinase; TMTK, 92.6 0.073 2.5E-06 49.5 3.7 24 44-67 4-27 (184)
389 2zej_A Dardarin, leucine-rich 92.6 0.052 1.8E-06 49.5 2.6 22 44-65 3-24 (184)
390 2efe_B Small GTP-binding prote 92.6 0.067 2.3E-06 47.9 3.3 25 41-65 10-34 (181)
391 4dsu_A GTPase KRAS, isoform 2B 92.5 0.068 2.3E-06 48.2 3.3 25 42-66 3-27 (189)
392 2ew1_A RAS-related protein RAB 92.5 0.072 2.4E-06 49.8 3.5 25 42-66 25-49 (201)
393 2r8r_A Sensor protein; KDPD, P 92.5 0.14 4.7E-06 49.7 5.6 38 41-79 4-44 (228)
394 1sxj_D Activator 1 41 kDa subu 92.5 0.064 2.2E-06 54.0 3.4 23 46-68 61-83 (353)
395 3euj_A Chromosome partition pr 92.5 0.066 2.3E-06 57.6 3.6 25 44-68 30-54 (483)
396 2fna_A Conserved hypothetical 92.5 0.1 3.5E-06 52.2 4.8 34 44-78 31-64 (357)
397 2oil_A CATX-8, RAS-related pro 92.5 0.078 2.7E-06 48.4 3.7 25 42-66 24-48 (193)
398 1z0f_A RAB14, member RAS oncog 92.5 0.078 2.7E-06 47.2 3.6 25 42-66 14-38 (179)
399 2atv_A RERG, RAS-like estrogen 92.5 0.089 3E-06 48.3 4.0 26 41-66 26-51 (196)
400 1wms_A RAB-9, RAB9, RAS-relate 92.5 0.066 2.3E-06 47.8 3.1 25 42-66 6-30 (177)
401 3pqc_A Probable GTP-binding pr 92.4 0.084 2.9E-06 47.8 3.8 24 43-66 23-46 (195)
402 3tsz_A Tight junction protein 92.4 0.3 1E-05 51.0 8.4 24 42-68 231-254 (391)
403 1yqt_A RNAse L inhibitor; ATP- 92.4 0.063 2.2E-06 58.5 3.4 26 42-67 46-71 (538)
404 3lxx_A GTPase IMAP family memb 92.4 0.075 2.6E-06 50.9 3.5 25 42-66 28-52 (239)
405 2f7s_A C25KG, RAS-related prot 92.3 0.081 2.8E-06 49.3 3.6 23 43-65 25-47 (217)
406 3ea0_A ATPase, para family; al 92.3 0.13 4.6E-06 48.8 5.2 39 42-80 3-45 (245)
407 2qag_B Septin-6, protein NEDD5 92.3 0.065 2.2E-06 56.8 3.1 22 45-66 44-65 (427)
408 2a9k_A RAS-related protein RAL 92.3 0.088 3E-06 47.2 3.7 24 43-66 18-41 (187)
409 2rcn_A Probable GTPase ENGC; Y 92.3 0.07 2.4E-06 55.2 3.4 24 44-67 216-239 (358)
410 1g8p_A Magnesium-chelatase 38 92.3 0.048 1.7E-06 54.9 2.1 23 46-68 48-70 (350)
411 3ozx_A RNAse L inhibitor; ATP 92.2 0.058 2E-06 58.8 2.8 24 44-67 295-318 (538)
412 1ek0_A Protein (GTP-binding pr 92.2 0.087 3E-06 46.4 3.5 24 43-66 3-26 (170)
413 1moz_A ARL1, ADP-ribosylation 92.2 0.073 2.5E-06 47.9 3.0 24 41-64 16-39 (183)
414 3q85_A GTP-binding protein REM 92.2 0.087 3E-06 46.6 3.5 22 43-64 2-23 (169)
415 2qgz_A Helicase loader, putati 92.2 0.076 2.6E-06 53.5 3.4 25 44-68 153-177 (308)
416 3kkq_A RAS-related protein M-R 92.2 0.11 3.7E-06 46.8 4.1 24 43-66 18-41 (183)
417 3b5x_A Lipid A export ATP-bind 92.1 0.067 2.3E-06 58.7 3.2 26 43-68 369-394 (582)
418 3te6_A Regulatory protein SIR3 92.1 0.071 2.4E-06 54.2 3.1 27 42-68 44-70 (318)
419 3b60_A Lipid A export ATP-bind 92.1 0.061 2.1E-06 59.0 2.8 26 43-68 369-394 (582)
420 1jr3_A DNA polymerase III subu 92.1 0.086 3E-06 53.4 3.7 26 44-69 39-64 (373)
421 2gf0_A GTP-binding protein DI- 92.1 0.12 4E-06 47.2 4.3 25 41-65 6-30 (199)
422 1fzq_A ADP-ribosylation factor 92.0 0.1 3.5E-06 47.4 3.9 25 41-65 14-38 (181)
423 1z06_A RAS-related protein RAB 92.0 0.096 3.3E-06 47.6 3.7 24 42-65 19-42 (189)
424 2fg5_A RAB-22B, RAS-related pr 92.0 0.084 2.9E-06 48.3 3.3 25 42-66 22-46 (192)
425 1u0l_A Probable GTPase ENGC; p 92.0 0.066 2.3E-06 53.7 2.7 24 44-67 170-193 (301)
426 2obl_A ESCN; ATPase, hydrolase 92.0 0.093 3.2E-06 54.0 3.8 26 44-69 72-97 (347)
427 1ko7_A HPR kinase/phosphatase; 92.0 0.075 2.6E-06 54.0 3.1 26 44-70 145-170 (314)
428 3tkl_A RAS-related protein RAB 91.9 0.1 3.4E-06 47.5 3.7 25 42-66 15-39 (196)
429 1m7b_A RND3/RHOE small GTP-bin 91.9 0.1 3.4E-06 47.4 3.7 26 41-66 5-30 (184)
430 2bov_A RAla, RAS-related prote 91.9 0.11 3.8E-06 47.6 4.0 25 42-66 13-37 (206)
431 1xp8_A RECA protein, recombina 91.9 0.31 1.1E-05 50.4 7.8 37 43-80 74-113 (366)
432 2dpy_A FLII, flagellum-specifi 91.9 0.093 3.2E-06 55.7 3.8 26 44-69 158-183 (438)
433 3q72_A GTP-binding protein RAD 91.9 0.092 3.1E-06 46.3 3.2 21 44-64 3-23 (166)
434 2g6b_A RAS-related protein RAB 91.8 0.11 3.6E-06 46.5 3.7 25 42-66 9-33 (180)
435 1yqt_A RNAse L inhibitor; ATP- 91.8 0.081 2.8E-06 57.7 3.4 24 44-67 313-336 (538)
436 3j16_B RLI1P; ribosome recycli 91.8 0.08 2.7E-06 58.6 3.3 24 44-67 379-402 (608)
437 3bwd_D RAC-like GTP-binding pr 91.8 0.11 3.6E-06 46.7 3.6 25 42-66 7-31 (182)
438 1q57_A DNA primase/helicase; d 91.8 0.41 1.4E-05 51.3 8.9 27 43-69 242-268 (503)
439 2z43_A DNA repair and recombin 91.8 0.14 4.7E-06 51.8 4.8 25 43-67 107-131 (324)
440 2xtp_A GTPase IMAP family memb 91.7 0.11 3.7E-06 50.4 3.8 24 42-65 21-44 (260)
441 3t5g_A GTP-binding protein RHE 91.7 0.091 3.1E-06 47.2 3.1 24 42-65 5-28 (181)
442 4dzz_A Plasmid partitioning pr 91.7 0.14 5E-06 47.1 4.5 38 43-80 1-41 (206)
443 2qen_A Walker-type ATPase; unk 91.7 0.13 4.6E-06 51.2 4.6 25 44-68 32-56 (350)
444 1zj6_A ADP-ribosylation factor 91.7 0.12 4.2E-06 46.9 3.9 24 42-65 15-38 (187)
445 2qu8_A Putative nucleolar GTP- 91.7 0.14 4.7E-06 48.5 4.4 24 42-65 28-51 (228)
446 3j16_B RLI1P; ribosome recycli 91.6 0.086 2.9E-06 58.3 3.4 25 43-67 103-127 (608)
447 3k53_A Ferrous iron transport 91.6 0.11 3.9E-06 50.8 3.8 24 43-66 3-26 (271)
448 3ihw_A Centg3; RAS, centaurin, 91.6 0.13 4.6E-06 46.9 4.1 24 43-66 20-43 (184)
449 1iqp_A RFCS; clamp loader, ext 91.5 0.098 3.3E-06 51.8 3.4 24 45-68 48-71 (327)
450 1m2o_B GTP-binding protein SAR 91.5 0.1 3.6E-06 47.8 3.3 24 42-65 22-45 (190)
451 2cxx_A Probable GTP-binding pr 91.5 0.098 3.4E-06 47.2 3.1 22 44-65 2-23 (190)
452 1ojl_A Transcriptional regulat 91.5 0.13 4.3E-06 51.7 4.1 23 45-67 27-49 (304)
453 2bcg_Y Protein YP2, GTP-bindin 91.5 0.12 4E-06 47.8 3.7 24 42-65 7-30 (206)
454 2fh5_B SR-beta, signal recogni 91.5 0.11 3.6E-06 48.4 3.4 25 42-66 6-30 (214)
455 1ksh_A ARF-like protein 2; sma 91.5 0.12 4.2E-06 46.7 3.7 25 41-65 16-40 (186)
456 1xx6_A Thymidine kinase; NESG, 91.5 0.17 5.9E-06 47.5 4.8 25 43-67 8-32 (191)
457 3hr8_A Protein RECA; alpha and 91.4 0.11 3.7E-06 53.8 3.6 25 43-67 61-85 (356)
458 3oes_A GTPase rhebl1; small GT 91.4 0.12 4.1E-06 47.7 3.7 24 43-66 24-47 (201)
459 2qnr_A Septin-2, protein NEDD5 91.4 0.1 3.4E-06 52.4 3.3 23 43-65 18-40 (301)
460 2b8t_A Thymidine kinase; deoxy 91.4 0.14 4.8E-06 49.4 4.2 25 43-67 12-36 (223)
461 1mh1_A RAC1; GTP-binding, GTPa 91.3 0.13 4.3E-06 46.2 3.6 23 43-65 5-27 (186)
462 2chq_A Replication factor C sm 91.3 0.11 3.7E-06 51.3 3.4 22 46-67 41-62 (319)
463 3bk7_A ABC transporter ATP-bin 91.3 0.098 3.3E-06 57.9 3.4 24 44-67 383-406 (607)
464 4bas_A ADP-ribosylation factor 91.3 0.12 3.9E-06 47.2 3.3 23 42-64 16-38 (199)
465 3cbq_A GTP-binding protein REM 91.3 0.097 3.3E-06 48.4 2.8 25 40-64 20-44 (195)
466 1r8s_A ADP-ribosylation factor 91.2 0.13 4.4E-06 45.2 3.5 22 45-66 2-23 (164)
467 2zts_A Putative uncharacterize 91.2 0.13 4.4E-06 48.9 3.7 24 43-66 30-53 (251)
468 2yl4_A ATP-binding cassette SU 91.2 0.066 2.2E-06 59.0 1.9 25 44-68 371-395 (595)
469 2fu5_C RAS-related protein RAB 91.2 0.073 2.5E-06 47.9 1.9 24 42-65 7-30 (183)
470 3qf4_B Uncharacterized ABC tra 91.2 0.07 2.4E-06 58.9 2.0 26 43-68 381-406 (598)
471 4a82_A Cystic fibrosis transme 91.2 0.057 2E-06 59.3 1.3 26 43-68 367-392 (578)
472 1f6b_A SAR1; gtpases, N-termin 91.1 0.13 4.5E-06 47.5 3.6 23 42-64 24-46 (198)
473 3ozx_A RNAse L inhibitor; ATP 91.1 0.11 3.9E-06 56.5 3.6 25 43-67 25-49 (538)
474 3bk7_A ABC transporter ATP-bin 91.1 0.09 3.1E-06 58.2 2.8 26 42-67 116-141 (607)
475 1x3s_A RAS-related protein RAB 91.1 0.1 3.5E-06 47.3 2.8 24 43-66 15-38 (195)
476 1tf7_A KAIC; homohexamer, hexa 91.1 0.11 3.7E-06 56.3 3.4 20 45-64 41-60 (525)
477 2b6h_A ADP-ribosylation factor 90.9 0.16 5.4E-06 46.7 3.9 24 41-64 27-50 (192)
478 3qf4_A ABC transporter, ATP-bi 90.9 0.073 2.5E-06 58.6 1.8 26 43-68 369-394 (587)
479 1t9h_A YLOQ, probable GTPase E 90.9 0.059 2E-06 54.6 1.0 23 44-66 174-196 (307)
480 1sxj_B Activator 1 37 kDa subu 90.9 0.13 4.3E-06 50.9 3.4 23 46-68 45-67 (323)
481 1f2t_A RAD50 ABC-ATPase; DNA d 90.8 0.17 5.7E-06 45.3 3.9 25 43-67 23-47 (149)
482 2zr9_A Protein RECA, recombina 90.8 0.13 4.6E-06 52.8 3.6 36 43-79 61-99 (349)
483 2o52_A RAS-related protein RAB 90.8 0.13 4.5E-06 47.5 3.3 24 42-65 24-47 (200)
484 3cio_A ETK, tyrosine-protein k 90.8 0.22 7.6E-06 49.8 5.1 39 42-80 103-144 (299)
485 1qhl_A Protein (cell division 90.8 0.023 7.9E-07 55.0 -2.1 24 45-68 29-52 (227)
486 1zbd_A Rabphilin-3A; G protein 90.8 0.15 5.1E-06 46.8 3.6 24 42-65 7-30 (203)
487 2iwr_A Centaurin gamma 1; ANK 90.7 0.14 5E-06 45.7 3.4 25 42-66 6-30 (178)
488 2il1_A RAB12; G-protein, GDP, 90.7 0.14 4.6E-06 47.0 3.2 23 42-64 25-47 (192)
489 2qag_C Septin-7; cell cycle, c 90.7 0.21 7.1E-06 52.7 5.0 24 43-66 31-54 (418)
490 3l0i_B RAS-related protein RAB 90.6 0.034 1.2E-06 51.4 -1.0 35 28-63 19-53 (199)
491 3bfv_A CAPA1, CAPB2, membrane 90.6 0.25 8.6E-06 48.7 5.3 39 42-80 81-122 (271)
492 3k9g_A PF-32 protein; ssgcid, 90.6 0.2 6.9E-06 48.6 4.5 39 42-80 26-66 (267)
493 3cph_A RAS-related protein SEC 90.6 0.18 6E-06 46.6 3.9 24 42-65 19-42 (213)
494 3pxg_A Negative regulator of g 90.5 0.15 5.3E-06 54.3 3.9 24 44-67 202-225 (468)
495 3k1j_A LON protease, ATP-depen 90.5 0.12 4.1E-06 57.0 3.1 26 44-69 61-86 (604)
496 1zcb_A G alpha I/13; GTP-bindi 90.5 0.16 5.5E-06 52.5 3.9 24 40-63 30-53 (362)
497 3lxw_A GTPase IMAP family memb 90.5 0.15 5.2E-06 49.4 3.5 24 42-65 20-43 (247)
498 2j1l_A RHO-related GTP-binding 90.4 0.17 5.7E-06 47.4 3.6 25 41-65 32-56 (214)
499 4dhe_A Probable GTP-binding pr 90.3 0.11 3.8E-06 48.5 2.3 25 42-66 28-52 (223)
500 3t1o_A Gliding protein MGLA; G 90.3 0.17 5.8E-06 45.8 3.4 25 43-67 14-38 (198)
No 1
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.95 E-value=1.2e-26 Score=230.68 Aligned_cols=207 Identities=56% Similarity=0.932 Sum_probs=177.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCe-------EEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPW-------VTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPT 113 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~-------v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~ 113 (542)
.+|++|+|+|++||||||+|+.|++.||+++ +.++++|+||+.+......+...+.+.|++|+++|++.+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~ 99 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKT 99 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHH
Confidence 3578999999999999999999999999873 447899999997777666677778899999999999999999
Q ss_pred HHHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 114 LQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 114 L~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
|..+..+..+..|.|++..|.+...+....+.++||+||++++..+.+.+.+|++|||+++.+++++|+..|+...+|.+
T Consensus 100 L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg~~ 179 (252)
T 1uj2_A 100 LKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRD 179 (252)
T ss_dssp HHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhCCC
Confidence 99999998899999999998776554444566899999999886677888899999999999999999999976677888
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
.+.+.++|..++.+.|.+++.|.+..||++|++.-+|...++.+.++|.+.+.+
T Consensus 180 ~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~ 233 (252)
T 1uj2_A 180 LEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNG 233 (252)
T ss_dssp HHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHcc
Confidence 899989998888888888888888999999965444566788999999888764
No 2
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.92 E-value=8.8e-25 Score=225.16 Aligned_cols=190 Identities=22% Similarity=0.340 Sum_probs=156.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHH
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNV----PWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQ 115 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~----p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~ 115 (542)
.+.|++|||+|++||||||+++.|+..++. ..+.++++|+||... ..... ......|+.|+++|.+++.+.|.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~--~~l~~-~~~~~~~g~P~~~D~~~l~~~L~ 165 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSN--AKLEK-QGLMKRKGFPESYDMPSLLRVLN 165 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH--HHHHH-TTCGGGTTSGGGBCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccch--hhhhh-HHHHhhccCcccccHHHHHHHHH
Confidence 456899999999999999999999999862 457789999999742 22221 11123477899999999999999
Q ss_pred HhHcCC-eeccceechhhchhcc-cccccCCCcEEEEEccccccChh----------hhccCCEEEEEECCHHHHHHHhh
Q psy9618 116 RLKEGK-KVDVPIYNFVTHSRET-RTKPMYGANVIIFEGILAFHNPQ----------VLELLDMKVFVDTDADVRLARRL 183 (542)
Q Consensus 116 ~lk~g~-~v~~P~yd~~~~~~~~-~~~~~~~~~vVIvEGi~~~~~~~----------l~~l~Dl~IfLdad~d~rl~Rrl 183 (542)
.+++|+ .+.+|.|++.++.+.. ....+.+.+++|+||++++..+. +.+++|++|||+++.+++++|++
T Consensus 166 ~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i 245 (321)
T 3tqc_A 166 AIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYI 245 (321)
T ss_dssp HHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHH
T ss_pred hhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHH
Confidence 999998 8999999999998763 34556788999999999998763 78899999999999999999999
Q ss_pred hcchhhhc---------------CCHH----HHHHHHHhhccchhhccccCCCCcccEEEECCCCCHH
Q psy9618 184 KRDILARG---------------RDLE----GVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCV 232 (542)
Q Consensus 184 ~Rd~~~rg---------------r~~~----~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ 232 (542)
+|+...|| .+.+ ....+|....+|.++++|.|++..||+|++.+.+|.+
T Consensus 246 ~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~~~v 313 (321)
T 3tqc_A 246 DRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADHSI 313 (321)
T ss_dssp HHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTTSCE
T ss_pred HhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecCCCCcE
Confidence 99977765 2222 3345777777899999999999999999999987654
No 3
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=99.91 E-value=1.5e-24 Score=214.10 Aligned_cols=99 Identities=46% Similarity=0.875 Sum_probs=95.4
Q ss_pred CCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhcCCchH-------------------------
Q psy9618 414 PLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKV------------------------- 468 (542)
Q Consensus 414 ~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~Lp~~~------------------------- 468 (542)
++++||+++++|||+++++|+|||++|++.+|+++++|++++|++||+++||+++
T Consensus 30 ~~~~~v~~~~~hp~i~~~lt~lRd~~t~~~~Fr~~~~rl~~ll~yEa~~~lp~~~~~v~TP~g~~~~g~~~~~~l~~V~I 109 (243)
T 1bd3_D 30 TRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSI 109 (243)
T ss_dssp HHCTTEEECCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTSCEEEEEEECTTSCEEEEEEECCCEEEEEE
T ss_pred cCCCcEEEecCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceeEEEECCCcceEeeeeccCcEEEEEE
Confidence 4678999999999999999999999999999999999999999999999999865
Q ss_pred --------------------------------------------------------------------------------
Q psy9618 469 -------------------------------------------------------------------------------- 468 (542)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (542)
T Consensus 110 LRaG~~m~~~l~~~ip~a~vg~I~~~Rd~~t~~~~~~~~~lp~di~~r~VilvDdmlaTG~T~~~ai~~L~~~G~~p~~I 189 (243)
T 1bd3_D 110 VRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERI 189 (243)
T ss_dssp ETTTHHHHHHHHHHSTTCCEEEEEEEECSSSCCEEEEEEECCTTGGGSEEEEECSEESSCHHHHHHHHHHHHHTCCGGGE
T ss_pred EcchHHHHHHHHHhCCcCeeeeEEEEEcCCCCCeEEEeccCCcccCCCEEEEECCccccHHHHHHHHHHHHHcCCCcceE
Confidence
Q ss_pred ----------HHHHHHHhCCCCEEEEeecCCCCCCCCceecCCCcccccccCCC
Q psy9618 469 ----------SIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512 (542)
Q Consensus 469 ----------G~~~~~~~~p~v~i~t~~iD~~l~~~~~i~PGlGd~gdr~~gt~ 512 (542)
|++++.++||+++|||++||++||+++||+|||||||||||||.
T Consensus 190 ~~~~lvaap~g~~~l~~~~p~v~I~ta~ID~~Lne~~yIvPGlGDaGDR~fGt~ 243 (243)
T 1bd3_D 190 IFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGTM 243 (243)
T ss_dssp EEEEEEECHHHHHHHHHHCTTSEEEEEEECSEECTTCCEESCCSCHHHHHHTCC
T ss_pred EEEEEEeCHHHHHHHHHHCCCCEEEEEEecCCcCCCceecCCCCcHHHhhcCCC
Confidence 99999999999999999999999999999999999999999984
No 4
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=99.90 E-value=2.5e-24 Score=209.25 Aligned_cols=96 Identities=30% Similarity=0.517 Sum_probs=90.5
Q ss_pred CCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhcCCchH---------------------------
Q psy9618 416 PEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKV--------------------------- 468 (542)
Q Consensus 416 ~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~Lp~~~--------------------------- 468 (542)
.+||||+ +||++++++|+|||++|++.+|+++++|++++|++||++.||+++
T Consensus 8 ~~~v~v~-~hp~i~~~lt~lRd~~t~~~~Fr~~~~rl~~lL~yEa~~~lp~~~~~V~TP~g~~~g~~~~~~~i~~V~IlR 86 (217)
T 3dmp_A 8 FPNLFIL-DHPLIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLR 86 (217)
T ss_dssp CTTEEEE-CCHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEECSSCEEEEEEECGGGEEEEEEET
T ss_pred CCCeEec-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceeEEEECCCeEEEEEEecCCcEEEEEecc
Confidence 4589998 589999999999999999999999999999999999999999865
Q ss_pred --------------------------------------------------------------------------------
Q psy9618 469 -------------------------------------------------------------------------------- 468 (542)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (542)
T Consensus 87 aG~~m~~~l~~~ip~a~vg~i~~~Rd~~t~p~~~~~~lP~i~~~~VilvD~~laTG~T~~~ai~~L~~~G~pe~~I~~~~ 166 (217)
T 3dmp_A 87 AGVGMSDGLLELIPSARVGHIGVYRADDHRPVEYLVRLPDLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLA 166 (217)
T ss_dssp TTHHHHHHHHHHCTTSEECEEECSCCCSSSCCCSEEECCCCTTCEEEEECSEESSSHHHHHHHHHHHTTTCCGGGEEEEC
T ss_pred cchHHHHHHHHhCcCCceeEEEEEECCCCCcEEEeecCCCCCCCEEEEEcCcccccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence
Q ss_pred ------HHHHHHHhCCCCEEEEeecCCCCCCCCceecCCCcccccccCCC
Q psy9618 469 ------SIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512 (542)
Q Consensus 469 ------G~~~~~~~~p~v~i~t~~iD~~l~~~~~i~PGlGd~gdr~~gt~ 512 (542)
|++++.++||+|+||||+||++||+++||+|||||||||||||+
T Consensus 167 ~vaa~egl~~l~~~~P~v~i~ta~iD~~Lne~~yIvPGlGDaGDR~fgt~ 216 (217)
T 3dmp_A 167 LVAAPEGVQVFQDAHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFGTK 216 (217)
T ss_dssp SEECHHHHHHHHHHCTTCEEEESEECCEECTTSCEESSCSCHHHHHHC--
T ss_pred EEeCHHHHHHHHHHCCCCEEEEEEecCCcCCCCCccCCCCCHHHhhcCCC
Confidence 99999999999999999999999999999999999999999985
No 5
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.90 E-value=1.6e-22 Score=200.04 Aligned_cols=206 Identities=53% Similarity=0.902 Sum_probs=172.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCC-------eEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVP-------WVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPT 113 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p-------~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~ 113 (542)
..+.+|||+|++||||||+++.|+..+|.. .+..+++|.||+.++..+..+.....+.|+++..++.+.+.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRT 102 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHHH
Confidence 346899999999999999999999998854 2446799999987777766666666678888888999989999
Q ss_pred HHHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 114 LQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 114 L~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
|..+..+.....+.|+...+.+........+.+++|+||+..+....+.+++|.+||+.++.+.++.|++.|+. .+|++
T Consensus 103 L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~~~~~r~~~r~~-~~G~~ 181 (245)
T 2jeo_A 103 LKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV-RRGRD 181 (245)
T ss_dssp HHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHHHHHHHHHHHHT-C---C
T ss_pred HHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHHHHHHHHHHHHH-HcCCC
Confidence 98887777777888888887766443334567899999998887777888899999999999999999999987 77899
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
.+++..+|..++.+.++++++|.++.||+||++..+|...++.++++|.+.+++
T Consensus 182 ~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~~ 235 (245)
T 2jeo_A 182 LEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNG 235 (245)
T ss_dssp HHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998777888899999999888875
No 6
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=99.89 E-value=7.7e-24 Score=204.83 Aligned_cols=94 Identities=29% Similarity=0.464 Sum_probs=89.9
Q ss_pred ceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhcCCchH-----------------------------
Q psy9618 418 ALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKV----------------------------- 468 (542)
Q Consensus 418 nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~Lp~~~----------------------------- 468 (542)
|++| ++|||+++++|+|||++|++.+|+++++|++++|++||+++||+++
T Consensus 2 ~v~v-~~hp~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~v~TP~~~~~g~~~~g~~l~~V~ILraG 80 (208)
T 2ehj_A 2 KIVE-VKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAG 80 (208)
T ss_dssp EEEE-CCCHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEEETTEEEEEEEECSSCCEEEEBTTGG
T ss_pred CeEE-cCCHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHhcCCceEEEEECCCccEEEEEecCCceEEEEeecCH
Confidence 5666 7899999999999999999999999999999999999999999865
Q ss_pred --------------------------------------------------------------------------------
Q psy9618 469 -------------------------------------------------------------------------------- 468 (542)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (542)
T Consensus 81 ~~~~~~l~~~ip~~~vg~i~~~rd~~t~~~~~~~~~lp~di~~r~VilvDd~laTG~T~~~ai~~L~~~G~~~I~~~~lv 160 (208)
T 2ehj_A 81 LGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLV 160 (208)
T ss_dssp GGGHHHHHHHCTTCEECEEEEEECTTTCCEEEEEEECCSCGGGCEEEEEEEEESSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHHHhCCcCceeEEEEEEcCCCCceEEEecCCCCccCCCEEEEECCccccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence
Q ss_pred ----HHHHHHHhCCCCEEEEeecCCCCCCCCceecCCCcccccccCCC
Q psy9618 469 ----SIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512 (542)
Q Consensus 469 ----G~~~~~~~~p~v~i~t~~iD~~l~~~~~i~PGlGd~gdr~~gt~ 512 (542)
|++++.++||+++|||++||++||+++||+|||||||||||||+
T Consensus 161 ~~p~g~~~l~~~~p~v~I~t~~iD~~lne~~yIvPGlGDaGDR~fgt~ 208 (208)
T 2ehj_A 161 AAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK 208 (208)
T ss_dssp ECHHHHHHHHHHCTTSEEEESCBCSEECTTSCEESCCSCHHHHHHTCC
T ss_pred eCHHHHHHHHHHCCCcEEEEEecCCCCCCCceecCCCCcHHHhhcCCC
Confidence 99999999999999999999999999999999999999999984
No 7
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1
Probab=99.89 E-value=9.9e-24 Score=204.08 Aligned_cols=94 Identities=27% Similarity=0.522 Sum_probs=89.8
Q ss_pred ceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhcCCchH-----------------------------
Q psy9618 418 ALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKV----------------------------- 468 (542)
Q Consensus 418 nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~Lp~~~----------------------------- 468 (542)
|++| ++|||+++++|+|||++|++.+|+++++|++++|++||+++||+++
T Consensus 2 ~v~v-~~~p~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~v~TP~g~~~g~~~~g~~l~~V~ILraG 80 (208)
T 1v9s_A 2 RITL-VDHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKKLALVAILRAG 80 (208)
T ss_dssp CEEE-CCCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEECSSSEEEEEEECSSCCEEEEETTTH
T ss_pred ceEE-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHccCCCeEEEEECCCceEEEEEecCCceEEEEeccch
Confidence 4555 7899999999999999999999999999999999999999999865
Q ss_pred --------------------------------------------------------------------------------
Q psy9618 469 -------------------------------------------------------------------------------- 468 (542)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (542)
T Consensus 81 ~~~~~~l~~~ip~~~vg~I~~~rd~~t~~~~~~~~~lp~di~~r~vilvDd~laTG~T~~~ai~~L~~~G~~~I~~~~lv 160 (208)
T 1v9s_A 81 LVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLMAIL 160 (208)
T ss_dssp HHHHHHHHTTCTTCEEEEEEEC---------CEEEECCSCGGGSCEEEECSEESSSHHHHHHHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHHHHhCCCCeeeEEEEEEcCCCCCceEEeccCCCccCCCEEEEECCccccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence
Q ss_pred ----HHHHHHHhCCCCEEEEeecCCCCCCCCceecCCCcccccccCCC
Q psy9618 469 ----SIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512 (542)
Q Consensus 469 ----G~~~~~~~~p~v~i~t~~iD~~l~~~~~i~PGlGd~gdr~~gt~ 512 (542)
|++++.++||++.|||++||++||+++||+|||||||||||||.
T Consensus 161 ~~~~g~~~l~~~~p~v~I~t~~iD~~lne~~yIvPGlGDaGDR~fgt~ 208 (208)
T 1v9s_A 161 AAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208 (208)
T ss_dssp ECHHHHHHHHHHCTTCEEEEEEECSEECTTSCEESSCSCHHHHHHTCC
T ss_pred eCHHHHHHHHHHCCCcEEEEEeecCCCCCCceecCCCCcHHHhccCCC
Confidence 99999999999999999999999999999999999999999984
No 8
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=99.89 E-value=8.5e-24 Score=206.13 Aligned_cols=95 Identities=29% Similarity=0.471 Sum_probs=91.0
Q ss_pred ceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhcCCchH-----------------------------
Q psy9618 418 ALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKV----------------------------- 468 (542)
Q Consensus 418 nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~Lp~~~----------------------------- 468 (542)
+++++++|||+++++|+|||++|++.+|+++++|++++|++||++.||+++
T Consensus 14 ~~~~~~~~p~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~yEa~~~lp~~~~~v~TP~g~~~g~~~~g~~lviV~IlrgG 93 (221)
T 1o5o_A 14 KNLVVVDHPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVETPITKTIGYRINDKDIVVVPILRAG 93 (221)
T ss_dssp TTEEECCCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEECSSCEEEEEECCSTTEEEEEEETTH
T ss_pred ceEEecCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEEECCCceEEEEEecCCeEEEEEEecch
Confidence 456779999999999999999999999999999999999999999999865
Q ss_pred --------------------------------------------------------------------------------
Q psy9618 469 -------------------------------------------------------------------------------- 468 (542)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (542)
T Consensus 94 ~~~~~~l~~~lp~a~vg~I~~~Rd~~t~~~~~~~~~lp~di~gr~VilvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~lv 173 (221)
T 1o5o_A 94 LVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLPPLNDDKEVFLLDPMLATGVSSIKAIEILKENGAKKITLVALI 173 (221)
T ss_dssp HHHHHHHHHHSTTCEECEEEEEECTTTCCEEEEEEECCCCCTTCEEEEECSEESSSHHHHHHHHHHHHTTCCEEEEECSE
T ss_pred HHHHHHHHHhCCCCcEEEEEEEEcCCCCceeEEEecCCCccCCCEEEEECCccccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence
Q ss_pred ----HHHHHHHhCCCCEEEEeecCCCCCCCCceecCCCcccccccCCC
Q psy9618 469 ----SIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512 (542)
Q Consensus 469 ----G~~~~~~~~p~v~i~t~~iD~~l~~~~~i~PGlGd~gdr~~gt~ 512 (542)
|++++.++||++.|||++||++||+++||+|||||||||||||.
T Consensus 174 ~~~~g~~~l~~~~p~v~I~t~~ID~~Lne~~yIvPGlGDaGDR~fGt~ 221 (221)
T 1o5o_A 174 AAPEGVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRTK 221 (221)
T ss_dssp ECHHHHHHHHHHCTTCEEEESEECSEECTTSCEESSCSCHHHHHHTCC
T ss_pred eCHHHHHHHHHHCCCcEEEEEeccCCCCCCceecCCCCcHHHhccCCC
Confidence 99999999999999999999999999999999999999999984
No 9
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.89 E-value=1.5e-22 Score=194.67 Aligned_cols=203 Identities=46% Similarity=0.787 Sum_probs=168.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGK 121 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~ 121 (542)
.+.+|||+|++||||||+++.|+..++. .+.++++|.||+...... ......+.|+.+..++.+.+.+.++.+..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDHYYKDLGHLP--LEERLRVNYDHPDAFDLALYLEHAQALLRGL 81 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEEGGGCBCCCTTSC--HHHHHHSCTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecCccccCccccc--HHHhcCCCCCChhhhhHHHHHHHHHHHHcCC
Confidence 4689999999999999999999999872 344569999987432111 1112334577788899999999999998888
Q ss_pred eeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHH
Q psy9618 122 KVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQY 201 (542)
Q Consensus 122 ~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~ 201 (542)
.+..|.+++....+..+...+..+.++++||.+++.++....++|.+|||+++.+.++.|+++|+..++|++...+..++
T Consensus 82 ~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 82 PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88899998887766544334456789999999999888888899999999999999999999998777899988888889
Q ss_pred HhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 202 VNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 202 ~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
...+.+.|.+|++++++.||+||++++.+..+++.+.++|.+.+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~aD~ii~~~~~~~~~~~~~~~~i~~~~~~ 207 (211)
T 3asz_A 162 LEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEMLAAKALARLAR 207 (211)
T ss_dssp HHTHHHHHHHTTGGGGGGCSEEEESTTSCHHHHHHHHHHHTHHHHC
T ss_pred HHhhhhhHHHhcccchhcCeEEEeCCCcchHHHHHHHHHHHHHHHh
Confidence 9889999999999999999999999998889999999999887764
No 10
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.88 E-value=4.1e-23 Score=210.12 Aligned_cols=186 Identities=17% Similarity=0.259 Sum_probs=141.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhhhch-hcHHHH---HHHhcc--ccCCCCCccccHHhHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRV-LNEEQH---KKAAQN--EYNFDHPDAFDFELLLPT 113 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddfy~~-l~~e~~---~~~~~~--~~~fd~p~a~D~~lL~~~ 113 (542)
++++|||+|+|||||||+|+.|++.||. ..+.+|++|+||+. ...-.. .....+ .+.+-.|+++|++.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~ 83 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV 83 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHH
Confidence 4679999999999999999999998861 12457899999973 332211 111222 333334999999999999
Q ss_pred HHHhHcCCeeccceech-----hhchhcccc----ccc-CCCcEEEEEccccc---cChhhhccCCEEEEEECCHHHHHH
Q psy9618 114 LQRLKEGKKVDVPIYNF-----VTHSRETRT----KPM-YGANVIIFEGILAF---HNPQVLELLDMKVFVDTDADVRLA 180 (542)
Q Consensus 114 L~~lk~g~~v~~P~yd~-----~~~~~~~~~----~~~-~~~~vVIvEGi~~~---~~~~l~~l~Dl~IfLdad~d~rl~ 180 (542)
+..++.++.+..|.|++ ..|.+.... ... .+.+++|+||++++ ....+.+.+|++|||++|.+++++
T Consensus 84 l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~ 163 (290)
T 1a7j_A 84 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWI 163 (290)
T ss_dssp HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHH
T ss_pred HHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHH
Confidence 99999888899999954 334332221 223 35789999999887 345678899999999999999999
Q ss_pred HhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccE------EEECCC
Q psy9618 181 RRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADI------IVPRGG 228 (542)
Q Consensus 181 Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADi------VI~~~~ 228 (542)
|+++|+..+||.+.+++.+++..+ .+.|.+|++|+++.||+ +|+|++
T Consensus 164 Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 164 QKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp HHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred HHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCCC
Confidence 999999989999999999988888 89999999999999999 677654
No 11
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=99.86 E-value=3.5e-22 Score=194.20 Aligned_cols=92 Identities=30% Similarity=0.499 Sum_probs=87.2
Q ss_pred ceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhcCCchH-----------------------------
Q psy9618 418 ALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKV----------------------------- 468 (542)
Q Consensus 418 nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~Lp~~~----------------------------- 468 (542)
||||++ |||+++++|+|||++|++.+|+++++|++++|++||+++||+++
T Consensus 2 ~v~v~~-hp~~~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~yEa~~~l~~~~~~v~TP~g~~~~~~~~~~~~~i~iV~IlR 80 (216)
T 1xtt_A 2 PLYVID-KPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILR 80 (216)
T ss_dssp CEEECC-CHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEEECGGGGSEEEEEEET
T ss_pred ceEEcC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhCCceeEEEECCCccEecceEecCCCcEEEEeecC
Confidence 688877 99999999999999999999999999999999999988877644
Q ss_pred --------------------------------------------------------------------------------
Q psy9618 469 -------------------------------------------------------------------------------- 468 (542)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (542)
T Consensus 81 aG~~m~~gl~~~lp~a~vg~I~~~Rd~~t~~~~~~~~~p~~~y~klP~i~~~~~~VilvDp~laTG~T~~~ai~~L~~G~ 160 (216)
T 1xtt_A 81 AAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKAN 160 (216)
T ss_dssp TTHHHHHHHHHHCTTCEEEEEEEEECCCCCSSCCSCCCEEEEEEECCCCCTTTCEEEEECSEESSSHHHHHHHHHHGGGC
T ss_pred CcHHHHHHHHHHcccCccceEEEEECCCcccccccccCceEeeccCCCccCCcceEEEEcCCccchHHHHHHHHHHHhCC
Confidence
Q ss_pred --------------HHHHHHHhCCCCEEEEeecCCCCCCCCceecCCCcccccccC
Q psy9618 469 --------------SIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFG 510 (542)
Q Consensus 469 --------------G~~~~~~~~p~v~i~t~~iD~~l~~~~~i~PGlGd~gdr~~g 510 (542)
|++++.++||+|+||||+||++||+++||+||||||||||||
T Consensus 161 p~~I~~~~~vaa~~gl~~l~~~~P~v~I~ta~iD~~Lne~~yIvPGlGDaGDR~fg 216 (216)
T 1xtt_A 161 PKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216 (216)
T ss_dssp CSEEEEECSEEEHHHHHHHHHHCTTSEEEESEEESEECTTSCEESSCSCHHHHHHC
T ss_pred CCeEEEEEEecCHHHHHHHHHHCCCcEEEEEEecCCcCCCCCccCCCCChHhhccC
Confidence 788999999999999999999999999999999999999998
No 12
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.85 E-value=8.6e-21 Score=194.34 Aligned_cols=187 Identities=21% Similarity=0.345 Sum_probs=146.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV----PWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQR 116 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~----p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~ 116 (542)
..+.+|||+|++||||||+++.|+..++. -.+.++++|+++.. .........- ..|+.+..++...+...+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~--~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~ 154 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP--NQVLKERGLM-KKKGFPESYDMHRLVKFVSD 154 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC--HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCc--HHHHHhCCEe-ecCCCCCCccHHHHHHHHHH
Confidence 45689999999999999999999998862 23677899999862 2222111111 34666788899999999999
Q ss_pred hHcCCe-eccceechhhchhccc-ccccCCCcEEEEEccccccC----------hhhhccCCEEEEEECCHHHHHHHhhh
Q psy9618 117 LKEGKK-VDVPIYNFVTHSRETR-TKPMYGANVIIFEGILAFHN----------PQVLELLDMKVFVDTDADVRLARRLK 184 (542)
Q Consensus 117 lk~g~~-v~~P~yd~~~~~~~~~-~~~~~~~~vVIvEGi~~~~~----------~~l~~l~Dl~IfLdad~d~rl~Rrl~ 184 (542)
+..++. +.+|.|++..+.+... +....+.+++|+||++++.. ..+.+++|++|||++|.+++++|+++
T Consensus 155 l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~ 234 (308)
T 1sq5_A 155 LKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYIN 234 (308)
T ss_dssp HTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHH
T ss_pred HhCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHH
Confidence 988887 9999999999877643 23345678999999999876 26788999999999999999999999
Q ss_pred cchhh---------------hcCCHHH----HHHHHHhhccchhhccccCCCCcccEEEECCCCC
Q psy9618 185 RDILA---------------RGRDLEG----VIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGEN 230 (542)
Q Consensus 185 Rd~~~---------------rgr~~~~----vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n 230 (542)
|+... +|.+.++ +..||...+.|.+.+|++|+++.||+||++++++
T Consensus 235 R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~~ 299 (308)
T 1sq5_A 235 RFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANH 299 (308)
T ss_dssp HHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGGG
T ss_pred HHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCCCC
Confidence 97432 3555554 5567887888999999999999999999988754
No 13
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=99.84 E-value=2.6e-21 Score=187.74 Aligned_cols=94 Identities=31% Similarity=0.540 Sum_probs=90.0
Q ss_pred ceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhcCCchH-----------------------------
Q psy9618 418 ALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKV----------------------------- 468 (542)
Q Consensus 418 nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~Lp~~~----------------------------- 468 (542)
|++| ++|||+++++|+|||++|++.+|+++++|++++|++||++.||+++
T Consensus 3 ~v~~-~~~p~~~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~V~tPl~~~~~~~~~~~~~~vV~Ilr~G 81 (209)
T 1i5e_A 3 KVYV-FDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVSKARAKVIAGKKLGVIPILRAG 81 (209)
T ss_dssp CEEE-CCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHGGGCCEEEEEEECSSCEEEEEEECCCCEEEEEBTTGG
T ss_pred CeEE-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCceeeeeEecCCceEEEEEecCC
Confidence 6666 7899999999999999999999999999999999999999999865
Q ss_pred --------------------------------------------------------------------------------
Q psy9618 469 -------------------------------------------------------------------------------- 468 (542)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (542)
T Consensus 82 ~~~~~~L~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~l~TG~T~~~a~~~L~~~G~~~I~~~~lv 161 (209)
T 1i5e_A 82 IGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPSDVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLI 161 (209)
T ss_dssp GGGHHHHHHHCTTSEECEEEEECCTTCSSCEEEEEECCTTTTTSEEEEECSEESSSHHHHHHHHHHHHTTCCCEEEECSE
T ss_pred hHHHHHHHHhCCCCeEEEEEEEEcCCCCceEEEEEcCCCccCCCEEEEEcCCCcCHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence
Q ss_pred ----HHHHHHHhCCCCEEEEeecCCCCCCCCceecCCCcccccccCCC
Q psy9618 469 ----SIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512 (542)
Q Consensus 469 ----G~~~~~~~~p~v~i~t~~iD~~l~~~~~i~PGlGd~gdr~~gt~ 512 (542)
|++++.+.||++.|||++||++||+++||+|||||||||||||.
T Consensus 162 ~~~~g~~~l~~~~p~~~I~t~~id~~l~~~~~i~Pglgdagdr~fgt~ 209 (209)
T 1i5e_A 162 AAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK 209 (209)
T ss_dssp ECHHHHHHHHHHCTTCEEEESEECCEECTTCCEESSCSCHHHHHHSCC
T ss_pred ECHHHHHHHHHhCcCcEEEEEEeCCCCCCCceEccCCchHHHHhcCCC
Confidence 99999999999999999999999999999999999999999984
No 14
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}
Probab=99.84 E-value=3.2e-21 Score=186.49 Aligned_cols=92 Identities=28% Similarity=0.409 Sum_probs=88.6
Q ss_pred ecCCChhhhhHHhHhhccCCChhHHHHHHHHHHHHHHHHHhhcCCchH--------------------------------
Q psy9618 421 LLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKV-------------------------------- 468 (542)
Q Consensus 421 vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~llie~al~~Lp~~~-------------------------------- 468 (542)
.+++|||+++++|+|||++|++.+|+++++|++++|++||+++||+++
T Consensus 3 ~~~~hp~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~v~TP~~~~~~~~~~g~~~~~V~ILraG~~~ 82 (208)
T 2e55_A 3 VELSHPLIKHKVNTARIQDTSAEKLRKTLKELGFMLVYEALKDILLEEKEVRTWIGNKRFNYLNEEEIVFVPILRAGLSF 82 (208)
T ss_dssp EECCCHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEETTEEEEEEECCGGGEEEEEEETTTHHH
T ss_pred EecCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCceeEEeCCCCceEeeeecCCcEEEEEEecchHHH
Confidence 357899999999999999999999999999999999999999999865
Q ss_pred --------------------------------------------------------------------------------
Q psy9618 469 -------------------------------------------------------------------------------- 468 (542)
Q Consensus 469 -------------------------------------------------------------------------------- 468 (542)
T Consensus 83 ~~~l~~~lp~~~vg~i~~~rd~~t~~~~~~~~~lpdi~~r~vilvDd~laTG~T~~~ai~~L~~~G~~~I~~~~lv~~~~ 162 (208)
T 2e55_A 83 LEGALQVVPNAKVGFLGIKRNEETLESHIYYSRLPELKGKIVVILDPMLATGGTLEVALREILKHSPLKVKSVHAIAAPE 162 (208)
T ss_dssp HHHHHHHSTTCEECEEEEEECTTTCCEEEEEEECCCCBTSEEEEECSEESSSHHHHHHHHHHHTTCBSEEEEEEEEECHH
T ss_pred HHHHHHhCCCCcEEEEEEEEecCCCceEEEecCCCCCCCCEEEEECCccccHHHHHHHHHHHHHcCCCEEEEEEEEECHH
Confidence
Q ss_pred HHHHHHHhCCCCEEEEeecCCCCCCCCceecCCCcccccccCCC
Q psy9618 469 SIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512 (542)
Q Consensus 469 G~~~~~~~~p~v~i~t~~iD~~l~~~~~i~PGlGd~gdr~~gt~ 512 (542)
|++++.+.||++.|||++||++||+++||+|||||||||+|||.
T Consensus 163 g~~~l~~~~p~v~I~t~~iD~~l~e~~~I~PglgdagdR~fgt~ 206 (208)
T 2e55_A 163 GLKRIEEKFKEVEIFVGNVDERLNDKGYIIPGLGDIGDRLYAVS 206 (208)
T ss_dssp HHHHHHHHCTTSEEEEEEECSEECTTSCEESSCSSHHHHHHSCC
T ss_pred HHHHHHHHCCCcEEEEEeecCCCCCCceeccCccHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999995
No 15
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.83 E-value=9.3e-21 Score=196.61 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=124.3
Q ss_pred eEEeecchhhhchhcHHHHHHHh---ccccCCCCCccccHHhHHHHHHHhHcC---------------------------
Q psy9618 71 WVTLLSMDSFYRVLNEEQHKKAA---QNEYNFDHPDAFDFELLLPTLQRLKEG--------------------------- 120 (542)
Q Consensus 71 ~v~iIs~Ddfy~~l~~e~~~~~~---~~~~~fd~p~a~D~~lL~~~L~~lk~g--------------------------- 120 (542)
.+.+|+||+||.. ..++.... ....++++|++||.+++.+.++.|+++
T Consensus 155 ~v~vi~mDgFh~~--~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 232 (359)
T 2ga8_A 155 IAQIVPMDGFHLS--RRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQ 232 (359)
T ss_dssp SEEEEEGGGGBCC--HHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEET
T ss_pred eEEEEecCcCCCC--HHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccc
Confidence 3567899999973 33332211 124678899999999999999999887
Q ss_pred --CeeccceechhhchhcccccccCC-CcEEEEEccccccCh----hhhccCC-----EEEEEECCHHHHHHHhhhcchh
Q psy9618 121 --KKVDVPIYNFVTHSRETRTKPMYG-ANVIIFEGILAFHNP----QVLELLD-----MKVFVDTDADVRLARRLKRDIL 188 (542)
Q Consensus 121 --~~v~~P~yd~~~~~~~~~~~~~~~-~~vVIvEGi~~~~~~----~l~~l~D-----l~IfLdad~d~rl~Rrl~Rd~~ 188 (542)
..+.+|.||+.++.+......+.+ .++||+||++++... .+.+++| ++|||+||.+++++|+++|+.
T Consensus 233 ~~~~v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~- 311 (359)
T 2ga8_A 233 TIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHL- 311 (359)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHH-
T ss_pred cCceEeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhh-
Confidence 578899999999998776666555 689999998777552 3567888 999999999999999999986
Q ss_pred hhcC--CHHHHHHHHHhhccchhhccccCCCCcccEEEECC
Q psy9618 189 ARGR--DLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRG 227 (542)
Q Consensus 189 ~rgr--~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~ 227 (542)
.+|+ +.++...++...+.|.. ++|+|++..||+|+..-
T Consensus 312 ~~Gl~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~~~ 351 (359)
T 2ga8_A 312 QSGLVTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVHIR 351 (359)
T ss_dssp HTTSCSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEEEE
T ss_pred ccCCCCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEEec
Confidence 4788 89999999999999976 79999999999988643
No 16
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.81 E-value=4.3e-20 Score=187.85 Aligned_cols=186 Identities=22% Similarity=0.291 Sum_probs=138.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCC-----eEEeecchhhhchhcHHHHHHHhcc------ccCCCCCccccHH
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVP-----WVTLLSMDSFYRVLNEEQHKKAAQN------EYNFDHPDAFDFE 108 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p-----~v~iIs~Ddfy~~l~~e~~~~~~~~------~~~fd~p~a~D~~ 108 (542)
.+.+.+|+|+|+|||||||+++.|++.|+.. .+.++++|+||... ......... -..++.|+++|++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~--~~~~~l~~~~~~~~l~~~~g~p~a~d~~ 105 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTH--EDQLKLNEQFKNNKLLQGRGLPGTHDMK 105 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCH--HHHHHHHHHTTTCGGGSSSCSTTSBCHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCCh--HHHHHHhccccccchhhhccCcchhHHH
Confidence 3467999999999999999999999999642 34444999999743 222221111 1235679999999
Q ss_pred hHHHHHHHhHcC------Ceeccceechhh----chhcc--cccccCCCcEEEEEccccccChh----------------
Q psy9618 109 LLLPTLQRLKEG------KKVDVPIYNFVT----HSRET--RTKPMYGANVIIFEGILAFHNPQ---------------- 160 (542)
Q Consensus 109 lL~~~L~~lk~g------~~v~~P~yd~~~----~~~~~--~~~~~~~~~vVIvEGi~~~~~~~---------------- 160 (542)
.+.+.|+.++.| +.+.+|.|++.. +.+.. .+..+ +.+++|+||++++.++.
T Consensus 106 ~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~ 184 (290)
T 1odf_A 106 LLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVD 184 (290)
T ss_dssp HHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHH
T ss_pred HHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHH
Confidence 999999999998 678899999998 66543 34555 78999999998755543
Q ss_pred -----------hhccCCEE---EEEECCHHHHHHH-hhhc--c-hhhh--cCCHHHHHHHHHhhccchhhccccCC----
Q psy9618 161 -----------VLELLDMK---VFVDTDADVRLAR-RLKR--D-ILAR--GRDLEGVIKQYVNMVKPAFSTFIAPS---- 216 (542)
Q Consensus 161 -----------l~~l~Dl~---IfLdad~d~rl~R-rl~R--d-~~~r--gr~~~~vl~q~~~~v~p~y~~~i~p~---- 216 (542)
+++++|++ |||+++.++++.| |+.| + ..++ |++.+++ .+|.++++|.|+.|+.|.
T Consensus 185 ~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v-~~~~~~~~p~y~~~~~~~~~~~ 263 (290)
T 1odf_A 185 VNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQV-HAFVDRYMPSYKLYLNDFVRSE 263 (290)
T ss_dssp HHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHH-HHHHHTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHH-HHHHHHhcchHHHHhHHHHHhc
Confidence 34456766 9999977777776 7777 4 3345 8888885 788889999888777653
Q ss_pred --CCcccEEEECCCC
Q psy9618 217 --MVHADIIVPRGGE 229 (542)
Q Consensus 217 --~~~ADiVI~~~~~ 229 (542)
.+.||+|+..+.+
T Consensus 264 ~~~~~adlvl~~~~~ 278 (290)
T 1odf_A 264 SLGSIATLTLGIDSN 278 (290)
T ss_dssp CSSSSEEEEEEECTT
T ss_pred cCCCCCCEEEEECCC
Confidence 2379999986653
No 17
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.80 E-value=2.8e-19 Score=172.19 Aligned_cols=179 Identities=18% Similarity=0.238 Sum_probs=143.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhhhchhcHHHHHHHhcccc-CCCCCccccHHhHHHHHHHhH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVLNEEQHKKAAQNEY-NFDHPDAFDFELLLPTLQRLK 118 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddfy~~l~~e~~~~~~~~~~-~fd~p~a~D~~lL~~~L~~lk 118 (542)
...+|+|.|++||||||+++.|+..+.. +.+..|++|+|+... ... .....+ ..+.+..++...+.+.+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 96 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN--RLL--EPRGLLPRKGAPETFDFEGFQRLCHALK 96 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH--HHH--GGGTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH--HHH--HHhcccccCCCCchhhHHHHHHHHHHHh
Confidence 4689999999999999999999999852 235567899997632 211 111111 235678899999999999999
Q ss_pred cCCeeccceechhhchhcccccccCCC-cEEEEEccccccCh----hhhccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 119 EGKKVDVPIYNFVTHSRETRTKPMYGA-NVIIFEGILAFHNP----QVLELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 119 ~g~~v~~P~yd~~~~~~~~~~~~~~~~-~vVIvEGi~~~~~~----~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
.++.+..|.|++..+....+...+..+ .++|+||.+++.++ .+.+.+|.+|||+++.+++++|+++|. .++|++
T Consensus 97 ~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~-~~~g~t 175 (208)
T 3c8u_A 97 HQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGLN 175 (208)
T ss_dssp HCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH-HHTTCC
T ss_pred cCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH-HhcCCC
Confidence 999999999999988776665555555 89999999875432 457889999999999999999999995 467899
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEEC
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPR 226 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~ 226 (542)
.+.+..+|.....+.+ ++++|++..||+||+.
T Consensus 176 ~~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 176 HDAAVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp HHHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred HHHHHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 9999999988788877 7999999999999974
No 18
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.79 E-value=2.2e-18 Score=177.06 Aligned_cols=188 Identities=20% Similarity=0.356 Sum_probs=147.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchhhhchhcHHHHHHHhcccc-CCCCCccccHHhHHHHH
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNV----PWVTLLSMDSFYRVLNEEQHKKAAQNEY-NFDHPDAFDFELLLPTL 114 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~----p~v~iIs~Ddfy~~l~~e~~~~~~~~~~-~fd~p~a~D~~lL~~~L 114 (542)
...+.+|||.|++||||||+++.|+..+.. ..+.++++|.||...+. ... ..-. .++.|.++|.+.+.+.|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~--~e~--~~~~~~~g~~~~~d~~~~~~~L 162 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAE--LQR--RNLMHRKGFPESYNRRALMRFV 162 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHH--HHH--TTCTTCTTSGGGBCHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccH--HHH--HHHHHhcCCChHHHHHHHHHHH
Confidence 345789999999999999999999998742 45778899999864321 111 1111 24678899999999999
Q ss_pred HHhHcCCe-eccceechhhchhccc-ccccCCCcEEEEEccccccC---hhhhccCCEEEEEECCHHHHHHHhhhcchhh
Q psy9618 115 QRLKEGKK-VDVPIYNFVTHSRETR-TKPMYGANVIIFEGILAFHN---PQVLELLDMKVFVDTDADVRLARRLKRDILA 189 (542)
Q Consensus 115 ~~lk~g~~-v~~P~yd~~~~~~~~~-~~~~~~~~vVIvEGi~~~~~---~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~ 189 (542)
+.++.+.. ...|.|++..+.+... ...+...+++|+||++++.+ ..+.+++|++|||+++.+++++|+++|....
T Consensus 163 ~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~ 242 (312)
T 3aez_A 163 TSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAM 242 (312)
T ss_dssp HHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHH
Confidence 99986654 7789999998888643 33456779999999998853 5688999999999999999999998885432
Q ss_pred ---------------hcCCHHHHH----HHHHhhccchhhccccCCCCcccEEEECCCCCH
Q psy9618 190 ---------------RGRDLEGVI----KQYVNMVKPAFSTFIAPSMVHADIIVPRGGENC 231 (542)
Q Consensus 190 ---------------rgr~~~~vl----~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~ 231 (542)
.|.+.+++. .||...+.|.+.+|+.|++..||+||++++++.
T Consensus 243 rd~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~~~ 303 (312)
T 3aez_A 243 RTTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADHS 303 (312)
T ss_dssp TTTGGGSTTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTTSC
T ss_pred HhccccCcchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCCCCc
Confidence 255555544 578888899999999999999999999987654
No 19
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.77 E-value=3.7e-18 Score=163.41 Aligned_cols=170 Identities=17% Similarity=0.172 Sum_probs=119.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHH--HHHHhccccCCCCCccccHHhHHHHH----
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ--HKKAAQNEYNFDHPDAFDFELLLPTL---- 114 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~--~~~~~~~~~~fd~p~a~D~~lL~~~L---- 114 (542)
-+.++|||+|++||||||+|+.|++.+|++.+ ++|++++.+.... ......++..|+ ++.+|.+.|.+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vi---d~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~ 85 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVV---NVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESR 85 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEE---EHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEE---ECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCH
Confidence 35689999999999999999999999997654 9999998665431 112234555566 7888888777643
Q ss_pred HHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCH
Q psy9618 115 QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDL 194 (542)
Q Consensus 115 ~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~ 194 (542)
+.++..+.+.+|.+......+.... ..++|+|++++++. .+...+|.+|||+||.+++++|++.
T Consensus 86 ~~~~~l~~i~hP~i~~~~~~~~~~~-----~~~vv~d~pll~e~-~~~~~~d~vi~v~a~~e~r~~Rli~---------- 149 (192)
T 2grj_A 86 ENLKKLELLVHPLMKKRVQEIINKT-----SGLIVIEAALLKRM-GLDQLCDHVITVVASRETILKRNRE---------- 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC-----CEEEEEECTTTTTT-TGGGGCSEEEEEECCHHHHHHHCSS----------
T ss_pred HHHHHHHhhhCHHHHHHHHHHHHHc-----CCEEEEEEeceeec-ChHHhCCEEEEEECCHHHHHHHHHH----------
Confidence 2233334577888776665543221 46899999988876 4778999999999999999999821
Q ss_pred HHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHH
Q psy9618 195 EGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 195 ~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~ 243 (542)
.|+.. ++++.++.||+||+|++ +...+...+..+..
T Consensus 150 ----~q~~~--------~~~~~~~~AD~vI~n~~-~~~~l~~~v~~~~~ 185 (192)
T 2grj_A 150 ----ADRRL--------KFQEDIVPQGIVVANNS-TLEDLEKKVEEVMK 185 (192)
T ss_dssp ----HHHHH--------TTCTTCCCCSEEEECSS-CHHHHHHHHHHHHH
T ss_pred ----hcCCc--------hhhhHHhcCCEEEECCC-CHHHHHHHHHHHHH
Confidence 23322 23455788999999886 44434333444433
No 20
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.76 E-value=2.3e-19 Score=172.03 Aligned_cols=173 Identities=23% Similarity=0.386 Sum_probs=110.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhhhchhcHHHHHHHhcccc---CCCCCccccHHhHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSFYRVLNEEQHKKAAQNEY---NFDHPDAFDFELLLPTL 114 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~---~fd~p~a~D~~lL~~~L 114 (542)
..+.+|+|+|++||||||+++.|+..+ +.+ +.++++|.+++.... .. ..+.. .+ .++++|.+.+.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~-v~~~~~d~~~~~~~~--~~--~~~~~~~~~~-~~~~~d~~~l~~~v 93 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGIS-VCVFHMDDHIVERAK--RY--HTGNEEWFEY-YYLQWDVEWLTHQL 93 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCC-EEEEEGGGGCCCHHH--HS--SSSSCHHHHH-HHTSSCHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCe-EEEeccCcccCCHHH--HH--hcCCCCccCC-CccccCHHHHHHHH
Confidence 346899999999999999999999987 333 456788999874211 00 00000 00 13578888887765
Q ss_pred -HHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 115 -QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 115 -~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
..++.++.+.+|.|++..+..........+..+||+||++++. ..+.+++|++|||+||.+++++|+.+|+
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~-~~~~~~~d~~i~v~~~~~~~~~R~~~R~------- 165 (201)
T 1rz3_A 94 FRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQR-KEWRPFFDFVVYLDCPREIRFARENDQV------- 165 (201)
T ss_dssp GGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTS-TTTGGGCSEEEEECCC-------------------
T ss_pred HHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhcc-HHHHhhcCEEEEEeCCHHHHHHHHhcCC-------
Confidence 6777788899999998754332222334567899999999885 4577889999999999999999999986
Q ss_pred HHHHHHHHHhhccchhhccccCC--CCcccEEEECCC
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPS--MVHADIIVPRGG 228 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~--~~~ADiVI~~~~ 228 (542)
++....|.....|.++.|+.+. ++.||+||+|++
T Consensus 166 -~~~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~~ 201 (201)
T 1rz3_A 166 -KQNIQKFINRYWKAEDYYLETEEPIKRADVVFDMTS 201 (201)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC---
T ss_pred -HHHHHHHHhheeHHHHHHhCCCCcHhhCcEEecCCC
Confidence 3344555455566777776554 578999999864
No 21
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.74 E-value=7.3e-18 Score=163.40 Aligned_cols=188 Identities=18% Similarity=0.188 Sum_probs=134.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHH-----HHHHHhccccCCCCCccccHHhHHHHH
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEE-----QHKKAAQNEYNFDHPDAFDFELLLPTL 114 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e-----~~~~~~~~~~~fd~p~a~D~~lL~~~L 114 (542)
.-+++-||++|++||||||+++.|++ +|++++ ++|...+.+... ..-....++..|+..+.+|...|.+.+
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~-~g~~vi---daD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~v 81 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA-RGASLV---DTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALI 81 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH-TTCEEE---EHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHH
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH-CCCcEE---ECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHH
Confidence 34678999999999999999999987 997755 999987654311 112334455567777889998888877
Q ss_pred H----HhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhh
Q psy9618 115 Q----RLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILAR 190 (542)
Q Consensus 115 ~----~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~r 190 (542)
- .++.-+.+.+|.+.......... .+..++++|.+++|+...+..+||.+|||+||.+++++|+.+|+
T Consensus 82 F~d~~~~~~L~~i~HP~I~~~~~~~~~~----~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd---- 153 (210)
T 4i1u_A 82 FSDEDARRRLEAITHPLIRAETEREARD----AQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN---- 153 (210)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHT----CCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH----
T ss_pred hCCHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcC----
Confidence 2 33334567788775554444322 34568999999999756678899999999999999999999997
Q ss_pred cCCHHHHHHHHHhhccchhhccccCCCCcccEEEECC-CCCHHHHHHHHHHHHHHHH
Q psy9618 191 GRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRG-GENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 191 gr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~-~~n~~ai~~iv~~I~~~L~ 246 (542)
|.+.++....+.... +. ++.++.||+||+|+ + +..++...++.++..+.
T Consensus 154 g~s~eea~~ri~~Q~-~~-----eek~~~AD~VIdN~~g-sle~l~~qV~~l~~~~~ 203 (210)
T 4i1u_A 154 GFTREQVEAIIARQA-TR-----EARLAAADDVIVNDAA-TPDALAVQVDALHQRYL 203 (210)
T ss_dssp CCCHHHHHHHHHHSC-CH-----HHHHHTCSEEEECSSC-CHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcC-Ch-----HHHHHhCCEEEECCCC-CHHHHHHHHHHHHHHHH
Confidence 566777666555433 32 22356799999998 6 55555555555555443
No 22
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.68 E-value=2.6e-16 Score=150.44 Aligned_cols=186 Identities=19% Similarity=0.210 Sum_probs=107.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHH---H--HHHHhccccCCCCCccccHHhHHHHHH--
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEE---Q--HKKAAQNEYNFDHPDAFDFELLLPTLQ-- 115 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e---~--~~~~~~~~~~fd~p~a~D~~lL~~~L~-- 115 (542)
+++|+|+|++||||||+++.|++ +|.+++ ++|++++.+... . ......+...|...+.++...+...+-
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~i---d~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~ 77 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLV---DADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNH 77 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEE---EHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCccc---chHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCC
Confidence 47999999999999999999988 887755 999998753210 0 011122333332223333333322110
Q ss_pred --HhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 116 --RLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 116 --~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
.+.....+.+|.+.......... .....+|+||.+.++.. +...+|.+|||++|.+++++|+..|+ |.+
T Consensus 78 ~~~~~~l~~~~~p~v~~~~~~~~~~----~~~~~vv~~~~~l~e~~-~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~ 148 (206)
T 1jjv_A 78 DEDKLWLNNLLHPAIRERMKQKLAE----QTAPYTLFVVPLLIENK-LTALCDRILVVDVSPQTQLARSAQRD----NNN 148 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----CCSSEEEEECTTTTTTT-CGGGCSEEEEEECCHHHHHHHHC---------C
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh----cCCCEEEEEechhhhcC-cHhhCCEEEEEECCHHHHHHHHHHcC----CCC
Confidence 00000123345544333322211 12347899998877654 67889999999999999999999886 455
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
.+.+...+... .+. .+..+.||++|+|++...++++.+.++|.+.+..
T Consensus 149 ~e~~~~r~~~q-~~~-----~~~~~~ad~vIdn~~~~~~~~~~~~~~i~~~~~~ 196 (206)
T 1jjv_A 149 FEQIQRIMNSQ-VSQ-----QERLKWADDVINNDAELAQNLPHLQQKVLELHQF 196 (206)
T ss_dssp HHHHHHHHHHS-CCH-----HHHHHHCSEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCh-----HHHHHhCCEEEECCCCccccHHHHHHHHHHHHHH
Confidence 66555555442 121 2223468999999874443444777777666653
No 23
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.67 E-value=3.7e-16 Score=157.94 Aligned_cols=186 Identities=11% Similarity=0.140 Sum_probs=115.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHH------HHHHHhccccCCCCCccccHHhHHHH
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEE------QHKKAAQNEYNFDHPDAFDFELLLPT 113 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e------~~~~~~~~~~~fd~p~a~D~~lL~~~ 113 (542)
+..|++|+|+|++||||||+|+.|+ .+|+++ |++|++++.+... ... ...+...++..+.+|...+...
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~---id~D~~~~~~~~~~~~~~~~i~-~~~g~~i~~~~g~idr~~l~~~ 146 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYI---IDSDHLGHRAYAPGGPAYQPVV-EAFGTDILHKDGTINRKVLGSR 146 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEE---EEHHHHHHHHTSTTSTTHHHHH-HHHCGGGBCTTSSBCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcE---EehhHHHHHHhcCChHHHHHHH-HHcCccccCCCCCcCHHHHHHH
Confidence 3468999999999999999999999 688654 5999997643211 111 1222222333345666554322
Q ss_pred H----HHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhh
Q psy9618 114 L----QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILA 189 (542)
Q Consensus 114 L----~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~ 189 (542)
+ ..++..+.+.+|.+........... ...+.++||+||.+++.. .+...+|++|||+||.+++++|+.+|+
T Consensus 147 vf~~~~~~~~l~~i~~P~i~~~~~~~~~~~-~~~~~~~vIveg~~l~~~-~~~~~~d~vI~l~a~~ev~~~Rl~~R~--- 221 (281)
T 2f6r_A 147 VFGNKKQMKILTDIVWPVIAKLAREEMDVA-VAKGKTLCVIDAAMLLEA-GWQSMVHEVWTVVIPETEAVRRIVERD--- 221 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCEEEEECTTTTTT-TGGGGCSEEEEEECCHHHHHHHHHHHH---
T ss_pred HhCCHHHHHHhhcccChHHHHHHHHHHHHH-hccCCCEEEEEechhhcc-chHHhCCEEEEEcCCHHHHHHHHHHcC---
Confidence 1 1122223455666544443333211 123457899999987753 466789999999999999999999885
Q ss_pred hcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 190 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 190 rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
|++.+.....+... .+... + ...||++|++++ +. +.+.++|.+.+.
T Consensus 222 -g~s~e~~~~ri~~q-~~~~~-~----~~~AD~vIdn~~-s~---eel~~~I~~~l~ 267 (281)
T 2f6r_A 222 -GLSEAAAQSRLQSQ-MSGQQ-L----VEQSNVVLSTLW-ES---HVTQSQVEKAWN 267 (281)
T ss_dssp -CCCHHHHHHHHHTS-CCHHH-H----HHTCSEEEECSS-CH---HHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHc-CChHh-h----HhhCCEEEECCC-CH---HHHHHHHHHHHH
Confidence 56677766666654 22221 1 135899999876 33 344455544443
No 24
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.63 E-value=3.7e-16 Score=149.67 Aligned_cols=182 Identities=18% Similarity=0.253 Sum_probs=111.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL-NVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L-g~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
.+.+|+|+|++||||||+++.|++.+ + +.++++|+|++.- +...........++.++++|...+.+.+..+.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~---~~~i~~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~ 94 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPN---CSVISQDDFFKPE--SEIETDKNGFLQYDVLEALNMEKMMSAISCWMES 94 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTT---EEEEEGGGGBCCG--GGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCC---cEEEeCCccccCH--hHhhccccCCChhHHHHHhHHHHHHHHHHHHHhC
Confidence 36899999999999999999999987 5 4456999998732 1111001111123455677777777766554321
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHH
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQ 200 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q 200 (542)
...|.+.... ....+.+++|+||++.+....+.+.+|.+||++++.+++++|+..|.... +.....
T Consensus 95 --~~~~~~~~~~-------~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~-----e~~~~~ 160 (207)
T 2qt1_A 95 --ARHSVVSTDQ-------ESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVYQP-----PDSPGY 160 (207)
T ss_dssp --HTTSSCCC------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCCSS-----CCCTTH
T ss_pred --CCCCCcCCCe-------eecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCCCc-----cchHHH
Confidence 1122211110 11234678999999888666677889999999999999999988775321 111122
Q ss_pred HHhhccchhhccccCCCCcccEE--EECCCCCHHHHHHHHHHHHHHHH
Q psy9618 201 YVNMVKPAFSTFIAPSMVHADII--VPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 201 ~~~~v~p~y~~~i~p~~~~ADiV--I~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
+.+.+++.|..+.+...+.+|.+ |++++ .++.+.++|.+.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~Id~~~----~~eev~~~I~~~l~ 204 (207)
T 2qt1_A 161 FDGHVWPMYLKYRQEMQDITWEVVYLDGTK----SEEDLFLQVYEDLI 204 (207)
T ss_dssp HHHTHHHHHHHHHHHGGGCSSCCEEEETTS----CHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHhcCCeEEEecCCC----CHHHHHHHHHHHHH
Confidence 33333444443333334445655 77664 44677777776664
No 25
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.62 E-value=1.1e-15 Score=145.77 Aligned_cols=182 Identities=18% Similarity=0.209 Sum_probs=107.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcH---HH--HHHHhccccCCCCCccccHHhHHHHHH--
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNE---EQ--HKKAAQNEYNFDHPDAFDFELLLPTLQ-- 115 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~---e~--~~~~~~~~~~fd~p~a~D~~lL~~~L~-- 115 (542)
|++|+|+|++||||||+++.|++ +|+++ +++|++++.+.. .. ......+...|+.++.++...|.+.+-
T Consensus 1 m~~i~i~G~~GsGKSTl~~~L~~-~g~~~---i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~ 76 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFRE-LGAYV---LDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKD 76 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH-TTCEE---EEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSC
T ss_pred CeEEEEECCCCcCHHHHHHHHHH-CCCEE---EEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCC
Confidence 36899999999999999999999 88654 499999875321 10 111122333343334555555443220
Q ss_pred --HhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 116 --RLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 116 --~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
.++.-..+..|.+.......... ..+..++|+||.+.+.. .+..++|.+|||++|.+++++|+..| |.+
T Consensus 77 ~~~~~~l~~l~~~~v~~~~~~~~~~---~~~~~~vive~~~l~~~-~~~~~~~~~i~l~~~~e~~~~Rl~~R-----~~~ 147 (204)
T 2if2_A 77 EEKLRKLEEITHRALYKEIEKITKN---LSEDTLFILEASLLVEK-GTYKNYDKLIVVYAPYEVCKERAIKR-----GMS 147 (204)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHH---SCTTCCEEEECSCSTTT-TCGGGSSEEEEECCCHHHHHHHHHHT-----CCC
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHh---ccCCCEEEEEccccccC-CchhhCCEEEEEECCHHHHHHHHHHc-----CCC
Confidence 00000112233332222211111 11226799999877653 45677899999999999999999887 345
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
.+...+.+.... +. .++...||++|++++ .++.+.++|.+.++.
T Consensus 148 ~~~~~~~~~~~~-~~-----~~~~~~ad~vId~~~----~~~~~~~~i~~~l~~ 191 (204)
T 2if2_A 148 EEDFERRWKKQM-PI-----EEKVKYADYVIDNSG----SIEETYKQVKKVYEE 191 (204)
T ss_dssp HHHHHHHHTTSC-CH-----HHHGGGCSEECCCSS----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC-Ch-----hHHHhcCCEEEECCC----CHHHHHHHHHHHHHH
Confidence 555444444422 21 123456899998764 346777777777653
No 26
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.61 E-value=5.8e-15 Score=142.44 Aligned_cols=169 Identities=17% Similarity=0.194 Sum_probs=102.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHH-----HHHHHhccccCCCCCccccHHhHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEE-----QHKKAAQNEYNFDHPDAFDFELLLPTLQ 115 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e-----~~~~~~~~~~~fd~p~a~D~~lL~~~L~ 115 (542)
.++++|+|+|++||||||+++.|++ +|++++ ++|.+++.+... .......++..|+..+.++...+.+.+-
T Consensus 2 ~~~~~I~i~G~~GSGKST~~~~L~~-lg~~~i---d~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f 77 (218)
T 1vht_A 2 SLRYIVALTGGIGSGKSTVANAFAD-LGINVI---DADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIF 77 (218)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH-TTCEEE---EHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH-cCCEEE---EccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHh
Confidence 3578999999999999999999988 887644 999998754211 1112223333444344556555443321
Q ss_pred H----hHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhc
Q psy9618 116 R----LKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARG 191 (542)
Q Consensus 116 ~----lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rg 191 (542)
. +...+.+..|.+.......... ++...+++|+.+.+... +...+|++|||++|.+++++|+..|+ +
T Consensus 78 ~~~~~~~~l~~~~~p~v~~~~~~~~~~----~~~~~vi~~~~~l~~~~-~~~~~d~vi~l~~~~e~~~~Rl~~R~----~ 148 (218)
T 1vht_A 78 ANPEEKNWLNALLHPLIQQETQHQIQQ----ATSPYVLWVVPLLVENS-LYKKANRVLVVDVSPETQLKRTMQRD----D 148 (218)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHH----CCSSEEEEECTTTTTTT-GGGGCSEEEEEECCHHHHHHHHHHHH----T
T ss_pred CCHHHHHHHHHhHCHHHHHHHHHHHHh----cCCCEEEEEeeeeeccC-ccccCCEEEEEECCHHHHHHHHHHcC----C
Confidence 0 1111123344443322222111 12356788998776554 67789999999999999999998875 3
Q ss_pred CCHHHHHHHHHhhccchhhccccCCCCcccEEEECCC
Q psy9618 192 RDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGG 228 (542)
Q Consensus 192 r~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~ 228 (542)
.+.+.+...+..+ .+.+. +...||++|++++
T Consensus 149 ~~~~~~~~~~~~~-~~~~~-----~~~~ad~vId~~~ 179 (218)
T 1vht_A 149 VTREHVEQILAAQ-ATREA-----RLAVADDVIDNNG 179 (218)
T ss_dssp CCHHHHHHHHHHS-CCHHH-----HHHHCSEEEECSS
T ss_pred CCHHHHHHHHHhc-CChHH-----HHHhCCEEEECCC
Confidence 4444444444432 22221 2345799999887
No 27
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.57 E-value=1.4e-14 Score=142.54 Aligned_cols=188 Identities=16% Similarity=0.230 Sum_probs=116.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhH--
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLK-- 118 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk-- 118 (542)
..+++|+|+|++||||||+++.|++.||++++ ++|.+|+.++..... ..... -|.+.+.+.+..+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~---d~g~~~r~~~~~~~~----~gi~~-----~d~~~~~~~~~~~~~~ 74 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYL---DTGAMYRIATLAVLR----AGADL-----TDPAAIEKAAADAEIG 74 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEE---EHHHHHHHHHHHHHH----HTCCT-----TCHHHHHHHHHTCCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcc---cCCcHHHHHHHHHHH----cCCCc-----hhhHHHHHHHHhCCEE
Confidence 34689999999999999999999999997755 999999865422111 11111 01111222221110
Q ss_pred ------------cCCe-----------------eccceechhhchhcccccccCCC-cEEEEEccccccChhhhccCCEE
Q psy9618 119 ------------EGKK-----------------VDVPIYNFVTHSRETRTKPMYGA-NVIIFEGILAFHNPQVLELLDMK 168 (542)
Q Consensus 119 ------------~g~~-----------------v~~P~yd~~~~~~~~~~~~~~~~-~vVIvEGi~~~~~~~l~~l~Dl~ 168 (542)
.++. ..+|.+.......+.. +... ..+|+||...... +.+..+++
T Consensus 75 ~~~~~~~~~v~l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~---~a~~~~~~V~~GRd~gt~--V~pda~lk 149 (233)
T 3r20_A 75 VGSDPDVDAAFLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRK---LATEGGRVVVEGRDIGTV--VLPDADVK 149 (233)
T ss_dssp ECCCTTSCCEEETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHH---HHTSSSCEEEEESSCCCC--CCTTCSEE
T ss_pred EeecCCCcEEEECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHH---HHHhcCcEEEecccceeE--EcCCCCEE
Confidence 0000 0123333333333221 2222 4588899632211 12225899
Q ss_pred EEEECCHHHHHHHhhhcchhh-hcCCHHHHHHHHHhhccchhhccccCCCCccc-EEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 169 VFVDTDADVRLARRLKRDILA-RGRDLEGVIKQYVNMVKPAFSTFIAPSMVHAD-IIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 169 IfLdad~d~rl~Rrl~Rd~~~-rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~AD-iVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
|||+||.++|.+|+.++.... .+.+.+++..+..++.+.+..+++.|.+..+| ++|+++.. .++++++.|...++
T Consensus 150 ifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l---~iee~v~~I~~~i~ 226 (233)
T 3r20_A 150 IFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDM---DQAQVIAHLLDLVT 226 (233)
T ss_dssp EEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTS---CHHHHHHHHHHHC-
T ss_pred EEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCC---CHHHHHHHHHHHHH
Confidence 999999999999998753322 34578899999999998888889999888877 88888764 34688888887777
Q ss_pred Hh
Q psy9618 247 AV 248 (542)
Q Consensus 247 ~k 248 (542)
++
T Consensus 227 ~~ 228 (233)
T 3r20_A 227 AQ 228 (233)
T ss_dssp --
T ss_pred Hh
Confidence 54
No 28
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.55 E-value=4.9e-14 Score=136.19 Aligned_cols=184 Identities=17% Similarity=0.225 Sum_probs=99.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCc-------------------
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPD------------------- 103 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~------------------- 103 (542)
+.+|+|+|++||||||+++.|++.+|++++ ++|++++....... .....++++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~---d~g~i~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL---DSGAIYRVLALAAL----HHHVDVASEDALVPLASHLDVRFVSTNGN 77 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE---EHHHHHHHHHHHHH----HHTCCTTCHHHHHHHHHTCCEEEEEETTE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc---cCcceeehhhHHHH----HcCCCccCHHHHHHHHHhCceeeeccCCC
Confidence 468999999999999999999999997765 99999974321000 0011111000
Q ss_pred ------------cccHHhHHHHHHHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEE
Q psy9618 104 ------------AFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFV 171 (542)
Q Consensus 104 ------------a~D~~lL~~~L~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfL 171 (542)
.+..+.+...+..+. .+|.+..... .........+.+++||..... .+.+.+|++|||
T Consensus 78 ~~~~l~~~~v~~~~~~~~~~~~~~~~~-----~~~~v~~~~~---~~~~~~~~~~~~vldg~~~~~--~~~~~~d~~i~l 147 (227)
T 1cke_A 78 LEVILEGEDVSGEIRTQEVANAASQVA-----AFPRVREALL---RRQRAFRELPGLIADGRDMGT--VVFPDAPVKIFL 147 (227)
T ss_dssp EEEEETTEECHHHHTSHHHHHHHHHHT-----TCHHHHHHHH---HHHHTTCCTTCEEEEESSCCC--CCCTTCSEEEEE
T ss_pred ceEEECCeeCchhhCCHHHHHHHHHhc-----CCHHHHHHHH---HHHHHHHhCCCEEEECCCccc--eEecCCCEEEEE
Confidence 000001111111110 0111111000 011111234578999985432 244568999999
Q ss_pred ECCHHHHHHHhhhcchhhhcC--CHHHHHHHHHhhccchhhccccCCCCc-ccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 172 DTDADVRLARRLKRDILARGR--DLEGVIKQYVNMVKPAFSTFIAPSMVH-ADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 172 dad~d~rl~Rrl~Rd~~~rgr--~~~~vl~q~~~~v~p~y~~~i~p~~~~-ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
+++.+++++|+.++ ...+|+ +.+...+++.+++.+.|.+..+|.... ++++|++++.+ +++++++|.+.+..
T Consensus 148 ~~~~e~~~~R~~~~-l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~---~~ev~~~I~~~l~~ 222 (227)
T 1cke_A 148 DASSEERAHRRMLQ-LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLS---IEQVIEKALQYARQ 222 (227)
T ss_dssp ECCHHHHHHHHHHH-HHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETTTSC---HHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHH-HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCC---HHHHHHHHHHHHHH
Confidence 99999999997654 224565 677777788777666676666776554 45888877433 45777777777764
No 29
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.55 E-value=1.3e-14 Score=137.46 Aligned_cols=181 Identities=20% Similarity=0.193 Sum_probs=107.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhc-H--HHHHHHhccccCCCCCccccHHhHHHHHHH-
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLN-E--EQHKKAAQNEYNFDHPDAFDFELLLPTLQR- 116 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~-~--e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~- 116 (542)
.++++|+|+|++||||||+++.|++. |++++ ++|++++... . .+.... . +..|. .+.++...+.+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~i---d~d~~~~~~~~~~~~~i~~~-~-~~~~~-~g~i~~~~l~~~~~~~ 78 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVL---DLDALAARARENKEEELKRL-F-PEAVV-GGRLDRRALARLVFSD 78 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEE---EHHHHHHHHHHHTHHHHHHH-C-GGGEE-TTEECHHHHHHHHTTS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEE---cccHHHHHhcCChHHHHHHH-H-HHHHh-CCCcCHHHHHHHHhCC
Confidence 46789999999999999999999998 87655 9999987543 1 111111 1 22232 335555554432200
Q ss_pred ---hHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCC
Q psy9618 117 ---LKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRD 193 (542)
Q Consensus 117 ---lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~ 193 (542)
++..+.+.+|.+. ...... ....+..++|+||.+++.. .+.+.+|.+|||++|.+++++|+..|+. .+
T Consensus 79 ~~~~~~l~~~~~~~i~---~~~i~~-~~~~g~~~vi~d~~~l~~~-~~~~~~d~~i~l~~~~e~~~~R~~~R~~----~~ 149 (203)
T 1uf9_A 79 PERLKALEAVVHPEVR---RLLMEE-LSRLEAPLVFLEIPLLFEK-GWEGRLHGTLLVAAPLEERVRRVMARSG----LS 149 (203)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHH-HHTCCCSEEEEECTTTTTT-TCGGGSSEEEEECCCHHHHHHHHHTTTC----CT
T ss_pred HHHHHHHHHHhChHHH---HHHHHH-hhhcCCCEEEEEecceecc-CchhhCCEEEEEECCHHHHHHHHHHcCC----CC
Confidence 0000112233332 111111 0123467899999876653 4556789999999999999999988852 33
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
.+.....+... .+.+ +....||++|++++ .++.++++|.+.+..
T Consensus 150 ~~~~~~~i~~~-~~~~-----~~~~~ad~vId~~~----~~~~~~~~i~~~~~~ 193 (203)
T 1uf9_A 150 REEVLARERAQ-MPEE-----EKRKRATWVLENTG----SLEDLERALKAVLAE 193 (203)
T ss_dssp THHHHHHHTTS-CCHH-----HHHHHCSEEECCSS----HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHC-CChh-----HHHHhCCEEEECCC----CHHHHHHHHHHHHHH
Confidence 33333333332 2221 11345899998775 446777788777653
No 30
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.51 E-value=2.1e-13 Score=129.59 Aligned_cols=171 Identities=22% Similarity=0.310 Sum_probs=98.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhH------
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLK------ 118 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk------ 118 (542)
+|+|+|++||||||+++.|++.||++++ ++|++++....... .....++++.. +.+.+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~---d~d~~~~~~~~~~~----~~g~~~~~~~~-----~~~~~~~~~~~~~~~ 71 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYL---SSGLLYRAAAFLAL----RAGVDPGDEEG-----LLALLEGLGVRLLAQ 71 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEE---EHHHHHHHHHHHHH----HHTCCTTCHHH-----HHHHHHHTTCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcee---ccchHHHhhhhhhH----hcCCCCCCHHH-----HHHHHHhCceeeeec
Confidence 8999999999999999999999998766 99999975432111 11122222211 111121111
Q ss_pred --------cCCee-----------------ccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEEC
Q psy9618 119 --------EGKKV-----------------DVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDT 173 (542)
Q Consensus 119 --------~g~~v-----------------~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLda 173 (542)
.|+.+ .+|.+........ .... ..+|+||..++. .+.+.+|++|||+|
T Consensus 72 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~--~~~vi~g~~~~~--~~~~~~d~~i~l~a 144 (208)
T 3ake_A 72 AEGNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRL---KEVP--PPFVAEGRDMGT--AVFPEAAHKFYLTA 144 (208)
T ss_dssp TTCCEEEETTEECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHH---HHSC--SCEEEEESSCCC--CCCTTCSEEEEEEC
T ss_pred CCCceEEECCeeCchhhChHHHHHHHHHhcccHHHHHHHHHHH---HHhc--CCEEEEccceeE--EEecCCcEEEEEEC
Confidence 01000 1111111111000 0112 568999987662 35566899999999
Q ss_pred CHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCccc-EEEECCCCCHHHHHHHHHHHHHHH
Q psy9618 174 DADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHAD-IIVPRGGENCVAIDLIVQHIHSQL 245 (542)
Q Consensus 174 d~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~AD-iVI~~~~~n~~ai~~iv~~I~~~L 245 (542)
|.+++++|+..|.. .+.+...+.+.++.......+ ...+| ++|++++.+. +.+++.|.+.+
T Consensus 145 ~~e~~~~R~~~r~~----~~~~~~~~~~~~R~~~~~~~~----~~~ad~~~Id~~~~~~---ee~~~~I~~~~ 206 (208)
T 3ake_A 145 SPEVRAWRRARERP----QAYEEVLRDLLRRDERDKAQS----APAPDALVLDTGGMTL---DEVVAWVLAHI 206 (208)
T ss_dssp CHHHHHHHHHHTSS----SCHHHHHHHHHHHHHTC--CC----CCCTTCEEEETTTSCH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcc----cCHHHHHHHHHHHHHHHhhcc----cCCCCEEEEECCCCCH---HHHHHHHHHHH
Confidence 99999999988853 345555555554322111111 45677 9999876333 46666665544
No 31
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.50 E-value=6.6e-13 Score=130.02 Aligned_cols=185 Identities=23% Similarity=0.309 Sum_probs=110.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhH---
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLK--- 118 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk--- 118 (542)
.+.+|+|+|++||||||+++.|++.||++++ ++|.+++....... .....+++++. +.+.+..+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~---d~d~~~~~~~~~~~----~~g~~~~~~~~-----~~~~~~~~~~~f 82 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYL---DTGAMYRAATYMAL----KNQLGVEEVEA-----LLALLDQHPISF 82 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEE---EHHHHHHHHHHHHH----HTTCCTTCHHH-----HHHHHHHSCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcee---cCCCeeEcceeeee----ccCCCcccHHH-----HHHHHHhccccc
Confidence 4679999999999999999999999997755 99999974322110 11112221111 111111100
Q ss_pred ------------cCCe-----------------eccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEE
Q psy9618 119 ------------EGKK-----------------VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKV 169 (542)
Q Consensus 119 ------------~g~~-----------------v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~I 169 (542)
.|+. +.+|.+........ ........+|+||.... ..+...+|++|
T Consensus 83 ~~~~~~~~~i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~---~~~~~~~~~v~~g~~~~--~~~l~~~d~vi 157 (236)
T 1q3t_A 83 GRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQ---QEIAQQGGIVMDGRDIG--TVVLPQAELKI 157 (236)
T ss_dssp EEETTTEEEEEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHH---HHHHTTSCEEEECSSCS--SSSGGGCSEEE
T ss_pred cccCCccceEeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHH---HHhcccCCEEEECCcch--hhhccCCCEEE
Confidence 0110 11111111111000 11122345788997543 12445679999
Q ss_pred EEECCHHHHHHHhhhcchhhhcC--CHHHHHHHHHhhccchhhccccCCCCccc-EEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 170 FVDTDADVRLARRLKRDILARGR--DLEGVIKQYVNMVKPAFSTFIAPSMVHAD-IIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 170 fLdad~d~rl~Rrl~Rd~~~rgr--~~~~vl~q~~~~v~p~y~~~i~p~~~~AD-iVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
||+||.+++++|++.|. ..||+ +.+.+.+.+.++..+.+.+++.|....+| ++|++++.+ ++.++++|.+.++
T Consensus 158 ~L~a~~e~~~~R~~~~~-~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s---~eev~~~I~~~l~ 233 (236)
T 1q3t_A 158 FLVASVDERAERRYKEN-IAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLN---IQEVVEKIKAEAE 233 (236)
T ss_dssp EEECCHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCC---HHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCCCCC---HHHHHHHHHHHHH
Confidence 99999999999986553 23443 66777777777666777777777776666 899877533 3566777776665
Q ss_pred H
Q psy9618 247 A 247 (542)
Q Consensus 247 ~ 247 (542)
.
T Consensus 234 ~ 234 (236)
T 1q3t_A 234 K 234 (236)
T ss_dssp H
T ss_pred h
Confidence 3
No 32
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.49 E-value=5.8e-13 Score=132.13 Aligned_cols=186 Identities=20% Similarity=0.224 Sum_probs=102.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCcc------------------
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA------------------ 104 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a------------------ 104 (542)
..+|+|+|++||||||+++.|+++||++++ ++|.+|+.++.... ...........
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL---DSGAIYRVLALAAL----HHQVDISTEEALVPLAAHLDVRFVSQNGQ 99 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHH----HTTCCSSSSTTHHHHHHTCCEEEEEETTE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHH----HcCCCcccHHHHHHHHHcCCEEEecCCCC
Confidence 469999999999999999999999998766 88999864332111 11111100000
Q ss_pred -------------ccHHhHHHHHHHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEE
Q psy9618 105 -------------FDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFV 171 (542)
Q Consensus 105 -------------~D~~lL~~~L~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfL 171 (542)
+....+......+. .+|.+...... ....+....-+|+||...... +.+..+++|||
T Consensus 100 ~~~~l~~~~v~~~i~~~~v~~~~s~~~-----~~~~vr~~l~~---~~~~~a~~~~~V~~gr~~~~~--v~~~~~~~ifl 169 (252)
T 4e22_A 100 LQVILEGEDVSNEIRTETVGNTASQAA-----AFPRVREALLR---RQRAFREAPGLIADGRDMGTI--VFPDAPVKIFL 169 (252)
T ss_dssp EEEEETTEECTTGGGSHHHHHHHHHHT-----TSHHHHHHHHH---HHHTTCCSSCEEEEESSCCCC--CSTTCSEEEEE
T ss_pred ceEEECCeehhHHHHHHHHHHHHHHhc-----ccHHHHHHHHH---HHHHHhhCCCEEEEeceecee--ecCCCCEEEEE
Confidence 00000000000000 01111111111 111223334588899643321 22335899999
Q ss_pred ECCHHHHHHHhhhcchhh-hcCCHHHHHHHHHhhccchhhccccCCCCccc-EEEECCCCCHHHHHHHHHHHHHHHHHh
Q psy9618 172 DTDADVRLARRLKRDILA-RGRDLEGVIKQYVNMVKPAFSTFIAPSMVHAD-IIVPRGGENCVAIDLIVQHIHSQLQAV 248 (542)
Q Consensus 172 dad~d~rl~Rrl~Rd~~~-rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~AD-iVI~~~~~n~~ai~~iv~~I~~~L~~k 248 (542)
+||.++|++|+.++.... .+.+.+.+.+.+.++...+..+.+.|.++.+| ++|++++.+ ++++++.|...++.+
T Consensus 170 ~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~---~eev~~~I~~~i~~~ 245 (252)
T 4e22_A 170 DASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMS---IEQVIEQALAYAQRI 245 (252)
T ss_dssp ECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSSSC---HHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCC---HHHHHHHHHHHHHHH
Confidence 999999999987642211 13467888888888887777788889888888 888887643 467788887777653
No 33
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.47 E-value=6.7e-13 Score=127.76 Aligned_cols=187 Identities=20% Similarity=0.279 Sum_probs=107.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHH--------HH-hccccCCC-----------CC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHK--------KA-AQNEYNFD-----------HP 102 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~--------~~-~~~~~~fd-----------~p 102 (542)
+++|+|+|++||||||+++.|++.+|++++ ++|.+++.++..... .. ......|. ..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~---~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g 79 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYV---DTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDN 79 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCcee---cCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCC
Confidence 578999999999999999999999997755 999999754211100 00 00000010 00
Q ss_pred ----ccccHHhHHHHHHHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHH
Q psy9618 103 ----DAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVR 178 (542)
Q Consensus 103 ----~a~D~~lL~~~L~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~r 178 (542)
..+....+.+.+..+ +.+|.+........ ..+.....+|++|.... ..+.+.+|++|||+||.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-----~~~p~v~~~~~~~~---~~~~~~~~~vi~g~~~~--~~~~~~~~~vi~l~a~~e~~ 149 (219)
T 2h92_A 80 EDVTDFLRNNDVTQHVSYV-----ASKEPVRSFAVKKQ---KELAAEKGIVMDGRDIG--TVVLPDADLKVYMIASVEER 149 (219)
T ss_dssp EECGGGSSSSHHHHHHHHH-----HTSHHHHHHHHHHH---HHHHTTCCEEEEESSCC--CCCCTTCSEEEEEECCHHHH
T ss_pred ccchhhcCcHHHHHHHHHh-----ccCHHHHHHHHHHH---HHhccCCcEEEEcCCcc--ceecCCCCEEEEEECCHHHH
Confidence 111111122222211 11232221111111 01111234788886431 12445679999999999999
Q ss_pred HHHhhhcchhhhcC--CHHHHHHHHHhhccchhhccccCCCCccc-EEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 179 LARRLKRDILARGR--DLEGVIKQYVNMVKPAFSTFIAPSMVHAD-IIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 179 l~Rrl~Rd~~~rgr--~~~~vl~q~~~~v~p~y~~~i~p~~~~AD-iVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
++|+.+|. ..||. +.+.+.+.+..+..++..+.+.+....+| ++|++++.+ ++.+++.|.+.++
T Consensus 150 ~~R~~~~~-~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~---~ee~~~~I~~~l~ 216 (219)
T 2h92_A 150 AERRYKDN-QLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKS---IEEVTDEILAMVS 216 (219)
T ss_dssp HHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCC---HHHHHHHHHHHHh
Confidence 99987542 23454 66777777766555555556666666677 999987533 3577777776665
No 34
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.43 E-value=3.8e-13 Score=123.26 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=94.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCee
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKV 123 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v 123 (542)
++|+|+|++||||||+|+.| +.+|++++ ++|++++...... + . ...+...+.+.+... .+..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i---~~~~~~~~~~~~~------~-~-----~~~~~~~~~~~~~~~-~~~~~ 64 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVI---VMSDVVRKRYSIE------A-K-----PGERLMDFAKRLREI-YGDGV 64 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEE---EHHHHHHHHHHHH------C---------CCHHHHHHHHHHH-HCTTH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEE---EHhHHHHHHHHhc------C-C-----ChhHHHHHHHHHHhh-CCHHH
Confidence 58999999999999999999 99998755 7888876321110 0 0 001111111111110 01110
Q ss_pred ccceechhhchhcccccccCCCcEEEEEccccccC-hhhhccC---CEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHH
Q psy9618 124 DVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN-PQVLELL---DMKVFVDTDADVRLARRLKRDILARGRDLEGVIK 199 (542)
Q Consensus 124 ~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~-~~l~~l~---Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~ 199 (542)
+. ..............+|+||...... ..+...+ +++|||++|.+++++|+..|+....+.+.+....
T Consensus 65 ----~~----~~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 136 (179)
T 3lw7_A 65 ----VA----RLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIR 136 (179)
T ss_dssp ----HH----HHHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHH
T ss_pred ----HH----HHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHH
Confidence 00 0000000013346689999722111 2233333 4899999999999999999976544556666665
Q ss_pred HHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 200 QYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 200 q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
.+..... ....++...||++|++++ .++.+.++|.+.+.
T Consensus 137 r~~~~~~----~~~~~~~~~ad~vId~~~----~~~~~~~~i~~~l~ 175 (179)
T 3lw7_A 137 RDREELK----LGIGEVIAMADYIITNDS----NYEEFKRRCEEVTD 175 (179)
T ss_dssp HHHHHHH----HTHHHHHHTCSEEEECCS----CHHHHHHHHHHHHH
T ss_pred HHHhhhc----cChHhHHHhCCEEEECCC----CHHHHHHHHHHHHH
Confidence 5532111 012234467899999876 33566777766665
No 35
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.38 E-value=2e-12 Score=121.19 Aligned_cols=177 Identities=20% Similarity=0.296 Sum_probs=92.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGK 121 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~ 121 (542)
.+.+|+|+|++||||||+|+.|++.+|++++ ++|++++..... .. ....+.+.+.+ ..|.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i---~~d~~~~~~~~~-------~~-------~~~~~~~~~~~---~~g~ 61 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHL---SAGELLRDERKN-------PD-------SQYGELIEKYI---KEGK 61 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEE---EHHHHHHHHHHC-------TT-------STTHHHHHHHH---HTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEE---eHHHHHHHHHhc-------cC-------ChHHHHHHHHH---HCCC
Confidence 3689999999999999999999999997654 899887632110 00 00000011111 1111
Q ss_pred eeccceechhhchhcccc-cccCCCcEEEEEccccccC--hhhhc------cCCEEEEEECCHHHHHHHhhhcchh-hhc
Q psy9618 122 KVDVPIYNFVTHSRETRT-KPMYGANVIIFEGILAFHN--PQVLE------LLDMKVFVDTDADVRLARRLKRDIL-ARG 191 (542)
Q Consensus 122 ~v~~P~yd~~~~~~~~~~-~~~~~~~vVIvEGi~~~~~--~~l~~------l~Dl~IfLdad~d~rl~Rrl~Rd~~-~rg 191 (542)
.+................ ........+|+||...... ..+.. .+|++|||++|.+++++|+.+|+.. .|.
T Consensus 62 ~~~~~~~~~~l~~~~~~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~ 141 (196)
T 1tev_A 62 IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRS 141 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCC
T ss_pred cCCHHHHHHHHHHHHHhhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCC
Confidence 100000000000000000 0112245788999754321 11211 3578999999999999999988642 121
Q ss_pred C-CHH---HHHHHHHhhccchhhccccCCCCcccE-EEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 192 R-DLE---GVIKQYVNMVKPAFSTFIAPSMVHADI-IVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 192 r-~~~---~vl~q~~~~v~p~y~~~i~p~~~~ADi-VI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
. +.+ ..+..|.....|....| .+.+++ +|+++. .++.+.+.|.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~y----~~~~~~~~id~~~----~~~~v~~~i~~~l~ 193 (196)
T 1tev_A 142 DDNRESLEKRIQTYLQSTKPIIDLY----EEMGKVKKIDASK----SVDEVFDEVVQIFD 193 (196)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHH----HHTTCEEEEETTS----CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHHH----HhcCCEEEEECCC----CHHHHHHHHHHHHH
Confidence 1 222 23445555444432222 123565 777653 34677777777665
No 36
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.37 E-value=7.2e-13 Score=125.00 Aligned_cols=122 Identities=17% Similarity=0.184 Sum_probs=69.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHH-HHhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHK-KAAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~-~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
.+.+|+|+|++||||||+|+.|++.||++++ ++|++++........ .....++ |........+.+...+...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i---~~d~~~~~~~~~~~~~~~~i~~~-~~~g~~~~~~~~~~~~~~~--- 83 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHL---STGELLREELASESERSKLIRDI-MERGDLVPSGIVLELLKEA--- 83 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEE---EHHHHHHHHHHHTCHHHHHHHHH-HHTTCCCCHHHHHHHHHHH---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEE---cHHHHHHHHHHhCCHHHHHHHHH-HHcCCcCCHHHHHHHHHHH---
Confidence 3579999999999999999999999996654 999998642210000 0000000 0000001111111111110
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEccccccC--hhhhc---cCCEEEEEECCHHHHHHHhhhcch
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN--PQVLE---LLDMKVFVDTDADVRLARRLKRDI 187 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~--~~l~~---l~Dl~IfLdad~d~rl~Rrl~Rd~ 187 (542)
... .......+|+||...... ..+.. ..|++|||++|.+++++|+..|+.
T Consensus 84 ---------------i~~--~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 84 ---------------MVA--SLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp ---------------HHH--HTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred ---------------Hhc--ccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 000 011235689999643211 11222 578999999999999999988864
No 37
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.37 E-value=6.9e-12 Score=119.34 Aligned_cols=157 Identities=17% Similarity=0.116 Sum_probs=92.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
+.+|+|+|++||||||+|+.|++.+|.+++ ++|.++... ....... ...|... +.......+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i---~~d~~~~~~---~~~~~~~-g~~~~~~---~~~~~~~~l~~~~---- 83 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFI---EGDALHPPE---NIRKMSE-GIPLTDD---DRWPWLAAIGERL---- 83 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEE---EGGGGCCHH---HHHHHHH-TCCCCHH---HHHHHHHHHHHHH----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEE---eCCcCcchh---hHHHHhc-CCCCCch---hhHHHHHHHHHHH----
Confidence 579999999999999999999999997655 899987531 1111111 1222111 1111111111110
Q ss_pred eccceechhhchhcccccccCCCcEEEEEccccccC--hhhhccC---CEEEEEECCHHHHHHHhhhcchhhhcCCHHHH
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN--PQVLELL---DMKVFVDTDADVRLARRLKRDILARGRDLEGV 197 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~--~~l~~l~---Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~v 197 (542)
.....+|+|+.+.... ..+.... +.+|||++|.+++++|+.+|+... .+.+.+
T Consensus 84 --------------------~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~--~~~~~~ 141 (202)
T 3t61_A 84 --------------------ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHF--MPSSLL 141 (202)
T ss_dssp --------------------TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSC--CCHHHH
T ss_pred --------------------hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccC--CCHHHH
Confidence 1123467776644321 1223333 589999999999999999886421 232333
Q ss_pred HHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 198 IKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 198 l~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
..++.. .. .+....++++|++++ .++++++.|.+.|..
T Consensus 142 ~~~~~~-~~-------~~~~~~~~~~Id~~~----~~~e~~~~I~~~l~~ 179 (202)
T 3t61_A 142 QTQLET-LE-------DPRGEVRTVAVDVAQ----PLAEIVREALAGLAR 179 (202)
T ss_dssp HHHHHH-CC-------CCTTSTTEEEEESSS----CHHHHHHHHHHHHHH
T ss_pred HHHHHh-cC-------CCCCCCCeEEEeCCC----CHHHHHHHHHHHHHH
Confidence 333332 22 233456899999874 346777778777765
No 38
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.36 E-value=7.9e-12 Score=118.77 Aligned_cols=168 Identities=17% Similarity=0.281 Sum_probs=92.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcH-------HHHHHH-hccccCCCCCccccHHhHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNE-------EQHKKA-AQNEYNFDHPDAFDFELLLP 112 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~-------e~~~~~-~~~~~~fd~p~a~D~~lL~~ 112 (542)
.++.+|+|+|++||||||+|+.|++.+|++++ ++|++++.... +..... ..+.. .+..+....+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i---~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~---~~~~~~~~~l~~ 86 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHL---SAGDLLRAEQGRAGSQYGELIKNCIKEGQI---VPQEITLALLRN 86 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEE---EHHHHHHHHHHSTTCSCHHHHHHHHHTTCC---CCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEE---eHHHHHHHHHhccCCHHHHHHHHHHHcCCc---CCHHHHHHHHHH
Confidence 45789999999999999999999999997544 89988763210 000000 01111 111211222222
Q ss_pred HHHHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccC-h----hhhccCCEEEEEECCHHHHHHHhhhcch
Q psy9618 113 TLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN-P----QVLELLDMKVFVDTDADVRLARRLKRDI 187 (542)
Q Consensus 113 ~L~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~-~----~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~ 187 (542)
.+.... ..+.+.+++||...... . .....+|++|||++|.+++++|+.+|+.
T Consensus 87 ~i~~~l-----------------------~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~ 143 (203)
T 1ukz_A 87 AISDNV-----------------------KANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGK 143 (203)
T ss_dssp HHHHHH-----------------------HTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHhhh-----------------------ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccc
Confidence 221110 01224577888532111 0 1222368999999999999999998864
Q ss_pred hhhcC---CHHHH---HHHHHhhccchhhccccCCCCcccE--EEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 188 LARGR---DLEGV---IKQYVNMVKPAFSTFIAPSMVHADI--IVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 188 ~~rgr---~~~~v---l~q~~~~v~p~y~~~i~p~~~~ADi--VI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
. +++ +.+.+ +..|.+...|.++.| +.+|. +|++++ .++.+.++|.+.+++
T Consensus 144 ~-~~~~~~~~e~~~~r~~~~~~~~~~~~~~~-----~~~~~vi~id~~~----~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 144 T-SGRSDDNIESIKKRFNTFKETSMPVIEYF-----ETKSKVVRVRCDR----SVEDVYKDVQDAIRD 201 (203)
T ss_dssp H-HCCTTCSHHHHHHHHHHHHHTTHHHHHHH-----HTTTCEEEEECSS----CHHHHHHHHHHHHHH
T ss_pred c-CCCCCCCHHHHHHHHHHHHHhhHHHHHHH-----HhcCcEEEEECCC----CHHHHHHHHHHHHhc
Confidence 2 222 23333 333444344444333 12443 356553 346777777776653
No 39
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.34 E-value=2.4e-12 Score=120.43 Aligned_cols=165 Identities=18% Similarity=0.272 Sum_probs=89.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcH------HHHHHHh-ccccCCCCCccccHHhHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNE------EQHKKAA-QNEYNFDHPDAFDFELLLPTL 114 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~------e~~~~~~-~~~~~fd~p~a~D~~lL~~~L 114 (542)
.+.+|+|+|++||||||+|+.|++.+|++++ ++|++.+.... ....... .+.. .+. +.....+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i---~~d~~~~~~~~~~~~~~~~i~~~~~~g~~---~~~----~~~~~~l 74 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHL---SAGDLLRQEQQSGSKDGEMIATMIKNGEI---VPS----IVTVKLL 74 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEE---EHHHHHHHHHHTTCTTHHHHHHHHHTTCC---CCH----HHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---eHHHHHHHHHhcCCHHHHHHHHHHHCCCC---CCH----HHHHHHH
Confidence 3579999999999999999999999997654 89888763210 0000000 0110 011 1111112
Q ss_pred HHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccC--hhh----hc--cCCEEEEEECCHHHHHHHhhhcc
Q psy9618 115 QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN--PQV----LE--LLDMKVFVDTDADVRLARRLKRD 186 (542)
Q Consensus 115 ~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~--~~l----~~--l~Dl~IfLdad~d~rl~Rrl~Rd 186 (542)
.... .. .....+|+||...... ..+ .. .+|++|||++|.+++++|+..|+
T Consensus 75 ~~~i------------------~~----~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 132 (194)
T 1qf9_A 75 KNAI------------------DA----NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRG 132 (194)
T ss_dssp HHHH------------------HT----STTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHHH------------------Hh----cCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhcc
Confidence 1110 00 1335688998532211 112 11 46889999999999999998886
Q ss_pred hhh-hcC-CHHHH---HHHHHhhccchhhccccCCCCccc--EEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 187 ILA-RGR-DLEGV---IKQYVNMVKPAFSTFIAPSMVHAD--IIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 187 ~~~-rgr-~~~~v---l~q~~~~v~p~y~~~i~p~~~~AD--iVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
... +.. +.+.. +..|.+...+.++.| +.+| ++|++++ .++.+.+.|.+.+++
T Consensus 133 ~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~-----~~~~~~~~id~~~----~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 133 ESSGRSDDNIESIKKRFNTFNVQTKLVIDHY-----NKFDKVKIIPANR----DVNEVYNDVENLFKS 191 (194)
T ss_dssp TTSCCTTCSHHHHHHHHHHHHHTHHHHHHHH-----HHTTCEEEEECSS----CHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhHHHHHHHH-----HhCCCEEEEECCC----CHHHHHHHHHHHHHH
Confidence 321 111 12332 222332223333222 2256 6787664 345677777766653
No 40
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.33 E-value=9.3e-12 Score=118.35 Aligned_cols=163 Identities=19% Similarity=0.173 Sum_probs=89.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHH------HHHH-HhccccCCCCCccccHHhHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEE------QHKK-AAQNEYNFDHPDAFDFELLLPT 113 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e------~~~~-~~~~~~~fd~p~a~D~~lL~~~ 113 (542)
..+++|+|+|++||||||+|+.|++.||++++ ++|++.+..... .... ...++..| .+.....
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i---~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~-------~~~~~~~ 87 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQI---STGELFRRNIEEGTKLGVEAKRYLDAGDLVP-------SDLTNEL 87 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEE---EHHHHHHHHHHTTCHHHHHHHHHHHHTCCCC-------HHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEE---ehhHHHHHHHHcCChHHHHHHHHHHcCCccc-------HHHHHHH
Confidence 34679999999999999999999999998755 888887631110 0000 00111111 1111122
Q ss_pred HHHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccC------hhhh---ccCCEEEEEECCHHHHHHHhhh
Q psy9618 114 LQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN------PQVL---ELLDMKVFVDTDADVRLARRLK 184 (542)
Q Consensus 114 L~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~------~~l~---~l~Dl~IfLdad~d~rl~Rrl~ 184 (542)
+.... .. ......+|+||...... ..+. ..+|++|||++|.+++++|+..
T Consensus 88 ~~~~~------------------~~---~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~ 146 (201)
T 2cdn_A 88 VDDRL------------------NN---PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKG 146 (201)
T ss_dssp HHHHT------------------TS---GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHH
T ss_pred HHHHH------------------hc---ccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHc
Confidence 22110 00 00113378898532110 0111 1368999999999999999988
Q ss_pred cchhhhcCCHHH---HHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHH
Q psy9618 185 RDILARGRDLEG---VIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQL 245 (542)
Q Consensus 185 Rd~~~rgr~~~~---vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L 245 (542)
|+... .+.+. .+..|.....|.++.| ..++++|++++ .++.+.++|.+.+
T Consensus 147 R~r~~--~~~e~~~~r~~~~~~~~~~~~~~~-----~~~~~~Id~~~----~~eev~~~I~~~l 199 (201)
T 2cdn_A 147 RGRAD--DTDDVILNRMKVYRDETAPLLEYY-----RDQLKTVDAVG----TMDEVFARALRAL 199 (201)
T ss_dssp HCCTT--CSHHHHHHHHHHHHHHTTTHHHHT-----TTTEEEEECCS----CHHHHHHHHHHHT
T ss_pred CCCCC--CCHHHHHHHHHHHHHhhHHHHHHh-----cCcEEEEeCCC----CHHHHHHHHHHHH
Confidence 75211 12222 2233333333333332 45788888754 3356666666544
No 41
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.33 E-value=2.8e-12 Score=122.11 Aligned_cols=163 Identities=21% Similarity=0.171 Sum_probs=87.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCc-cccHHhHHHHHHHhHc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPD-AFDFELLLPTLQRLKE 119 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~-a~D~~lL~~~L~~lk~ 119 (542)
..+.+|+|+|++||||||+++.|++.+|.+++ ++|++........... .|...+ .+......+.++.+.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i---~~d~~~~~~~g~~i~~------~~~~~~~~~~~~~e~~~l~~l~- 92 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFI---DLDWYIEERFHKTVGE------LFTERGEAGFRELERNMLHEVA- 92 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE---EHHHHHHHHHTSCHHH------HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEE---cchHHHHHHhCCcHHH------HHHhcChHHHHHHHHHHHHHHh-
Confidence 34569999999999999999999999998866 8888764211000000 000000 000111122222221
Q ss_pred CCeeccceechhhchhcccccccCCCcEEEEEccccccChhh---hccCCEEEEEECCHHHHHHHhh-hcchhh--hcCC
Q psy9618 120 GKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQV---LELLDMKVFVDTDADVRLARRL-KRDILA--RGRD 193 (542)
Q Consensus 120 g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l---~~l~Dl~IfLdad~d~rl~Rrl-~Rd~~~--rgr~ 193 (542)
...++||..|......... ....+.+|||++|.+++++|+. .|.... .+.+
T Consensus 93 -----------------------~~~~~vi~~ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~ 149 (199)
T 3vaa_A 93 -----------------------EFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKE 149 (199)
T ss_dssp -----------------------TCSSEEEECCTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCC
T ss_pred -----------------------hcCCcEEECCCcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCC
Confidence 2234555555433222222 2235899999999999999987 332111 1233
Q ss_pred HHH---HHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 194 LEG---VIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 194 ~~~---vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
.+. .+..+.+...|.| .. ||++|++++.+. +++++.|.+.++.
T Consensus 150 ~~~~~~~i~~~~~~r~~~y-------~~-ad~~Idt~~~s~---ee~~~~I~~~l~~ 195 (199)
T 3vaa_A 150 DDELMDFIIQALEKRAPFY-------TQ-AQYIFNADELED---RWQIESSVQRLQE 195 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------TT-SSEEEECCCCSS---HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH-------hh-CCEEEECCCCCH---HHHHHHHHHHHHH
Confidence 322 2222222222333 22 899999886332 4666666666553
No 42
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.30 E-value=9e-12 Score=114.93 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=81.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGK 121 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~ 121 (542)
.+.+|+|+|++||||||+|+.|+++||++++ ++|.+++......... ... .|+ ..+-.+...+.|..+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~i---d~D~~~~~~~g~~~~~-~~~--~~g--~~~~~~~~~~~l~~~~~-- 75 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVL---DTDMIISERVGLSVRE-IFE--ELG--EDNFRMFEKNLIDELKT-- 75 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEE---EHHHHHHHHHTSCHHH-HHH--HTC--HHHHHHHHHHHHHHHHT--
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEE---EChHHHHHHhCCCHHH-HHH--HhC--HHHHHHHHHHHHHHHHh--
Confidence 4679999999999999999999999998866 8998875321000000 000 010 00000111222332211
Q ss_pred eeccceechhhchhcccccccCCCcE-EEEEcc-ccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcC--CHHHH
Q psy9618 122 KVDVPIYNFVTHSRETRTKPMYGANV-IIFEGI-LAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGR--DLEGV 197 (542)
Q Consensus 122 ~v~~P~yd~~~~~~~~~~~~~~~~~v-VIvEGi-~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr--~~~~v 197 (542)
..+. |+..|. +.+. .. ...+|++|||++|.+++++|+.+|....|+. +.+.+
T Consensus 76 ----------------------~~~~~Vi~~g~g~~~~-~~-l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~ 131 (168)
T 1zuh_A 76 ----------------------LKTPHVISTGGGIVMH-EN-LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQA 131 (168)
T ss_dssp ----------------------CSSCCEEECCGGGGGC-GG-GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHH
T ss_pred ----------------------cCCCEEEECCCCEech-hH-HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHH
Confidence 1122 333231 2221 21 2346899999999999999998872111211 12333
Q ss_pred HHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHH
Q psy9618 198 IKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 198 l~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~ 243 (542)
...+..+ .+.| ...+|++|++++ + ++.+++.|.+
T Consensus 132 ~~~~~~r-~~~~-------~~~a~~~Id~~~-~---~e~~~~~I~~ 165 (168)
T 1zuh_A 132 KELFEKR-QALY-------EKNASFIIDARG-G---LNNSLKQVLQ 165 (168)
T ss_dssp HHHHHHH-HHHH-------HHTCSEEEEGGG-C---HHHHHHHHHH
T ss_pred HHHHHHH-HHHH-------HHHCCEEEECCC-C---HHHHHHHHHH
Confidence 3333332 2222 234899999776 3 3566666654
No 43
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.30 E-value=5.6e-12 Score=118.57 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=34.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
.++.+|+|+|++||||||+|+.|++.||++++ ++|++++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i---~~d~~~~~ 46 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHL---STGDLLRS 46 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEE---EHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEE---cHHHHHHH
Confidence 35679999999999999999999999997655 89988764
No 44
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.28 E-value=4.3e-12 Score=118.71 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=88.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccH-HhHHHHHHHhHcCCe
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDF-ELLLPTLQRLKEGKK 122 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~-~lL~~~L~~lk~g~~ 122 (542)
.+|+|+|++||||||+|+.|++.||++++ ++|++++......... .|+..+...+ +...+.++.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~i---d~D~~~~~~~g~~~~~------~~~~~g~~~~~~~~~~~~~~~~---- 69 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLL---DTDVAIEQRTGRSIAD------IFATDGEQEFRRIEEDVVRAAL---- 69 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEE---EHHHHHHHHHSSCHHH------HHHHHCHHHHHHHHHHHHHHHH----
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEE---eCchHHHHHcCCCHHH------HHHHhChHHHHHHHHHHHHHHH----
Confidence 46999999999999999999999998866 9999876321000000 0000000001 11111122111
Q ss_pred eccceechhhchhcccccccCCCcEEEEEccccccChhhhcc--CCEEEEEECCHHHHHHHhhhcchhh--hcCCHHHHH
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLEL--LDMKVFVDTDADVRLARRLKRDILA--RGRDLEGVI 198 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l--~Dl~IfLdad~d~rl~Rrl~Rd~~~--rgr~~~~vl 198 (542)
.....|+.+|.....++..++. ++.+|||+||.+++++|...|+... ...+....+
T Consensus 70 --------------------~~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i 129 (184)
T 2iyv_A 70 --------------------ADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKY 129 (184)
T ss_dssp --------------------HHCCSEEECCTTGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHH
T ss_pred --------------------hcCCeEEecCCcEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHH
Confidence 0112345555433222222222 6899999999999999998875311 122334444
Q ss_pred HHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 199 KQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 199 ~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
..+.....+.| .+.+|++|++++.+ ++.+++.|.+.++
T Consensus 130 ~~~~~~r~~~~-------~~~~~~~Idt~~~s---~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 130 RALMAKRAPLY-------RRVATMRVDTNRRN---PGAVVRHILSRLQ 167 (184)
T ss_dssp HHHHHHHHHHH-------HHHCSEEEECSSSC---HHHHHHHHHTTSC
T ss_pred HHHHHHHHHHH-------hccCCEEEECCCCC---HHHHHHHHHHHHh
Confidence 43322222322 24579999987433 3567777766654
No 45
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.28 E-value=6.7e-13 Score=137.23 Aligned_cols=151 Identities=19% Similarity=0.248 Sum_probs=97.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh--hchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--YRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf--y~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
+.+|+|+|++||||||+|+.|++.|+ +.+|++|+| |+.++.... .|..-+.+.+...|..+..+
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~---~~iis~Ds~qvYr~~~i~Ta-----------kp~~eE~~~v~hhl~di~~~ 72 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN---GEIISGDSMQVYQGMDIGTA-----------KVTTEEMEGIPHYMIDILPP 72 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT---EEEEECCSSTTBTTCCTTTT-----------CCCTTTTTTCCEESSSCBCT
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC---Cceecccccccccccccccc-----------CCCHHHHHHHHHHHHHHhCC
Confidence 36999999999999999999999998 457799999 875431100 00000000000001112222
Q ss_pred Ceeccceechhhchhccccccc-CCCcEEEEEccccccChhhhccCCEEEEEE-CCHH--HHHHHhhhcchhhhcCCHHH
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPM-YGANVIIFEGILAFHNPQVLELLDMKVFVD-TDAD--VRLARRLKRDILARGRDLEG 196 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~-~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLd-ad~d--~rl~Rrl~Rd~~~rgr~~~~ 196 (542)
.. .++.++|..+.+....... .+..+|+++|...+ .+.+...+| +|++ ++.+ +|+.|++.| ..++|+ .
T Consensus 73 ~~-~~~~~dF~~~a~~~i~~i~~~g~~~IlvGGt~ly-~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~---~ 144 (340)
T 3d3q_A 73 DA-SFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLY-IQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNN---N 144 (340)
T ss_dssp TS-CCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-HHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCH---H
T ss_pred cc-ccCHHHHHHHHHHHHHHHHhCCCcEEEECChhhh-HHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCH---H
Confidence 33 5677777777664332222 45667777777644 456766666 7888 8998 788888888 777775 3
Q ss_pred HHHHHHhhccchhhccccC
Q psy9618 197 VIKQYVNMVKPAFSTFIAP 215 (542)
Q Consensus 197 vl~q~~~~v~p~y~~~i~p 215 (542)
.+.++...+.|.+..++.|
T Consensus 145 ~l~~~L~~vdP~~a~~I~p 163 (340)
T 3d3q_A 145 KLHEYLASFDKESAKDIHP 163 (340)
T ss_dssp HHHHHHHHHCHHHHHHSCT
T ss_pred HHHHHHHhhCcHHHhhcCc
Confidence 6788888899999888876
No 46
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.28 E-value=2.1e-11 Score=116.88 Aligned_cols=36 Identities=33% Similarity=0.532 Sum_probs=32.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
.|+|+|++||||||+|+.|++++|++++ ++|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i---~~d~~~r~ 37 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHI---STGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE---EHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEe---eHHHHHHH
Confidence 6899999999999999999999998765 89988874
No 47
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.27 E-value=1.7e-11 Score=112.57 Aligned_cols=165 Identities=17% Similarity=0.107 Sum_probs=84.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
|.+|+|+|++||||||+++.|++.+|++++ +.|.|..... ....+.+....+..+..
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~~l~~~~i---~~d~~~~~~~--------------------~~~~~~~~~~~l~~~~~ 57 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSKELKYPII---KGSSFELAKS--------------------GNEKLFEHFNKLADEDN 57 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHHHHCCCEE---ECCCHHHHTT--------------------CHHHHHHHHHHHTTCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeee---cCcccccchh--------------------HHHHHHHHHHHHHhCCC
Confidence 358999999999999999999999998766 8888865322 01111122233333333
Q ss_pred eccceechhhchhcccccccCCCcEEEEEcc-ccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHH
Q psy9618 123 VDVPIYNFVTHSRETRTKPMYGANVIIFEGI-LAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQY 201 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi-~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~ 201 (542)
+....+ ..+...-.....+... +.... ..+ .......|++|||++|.+++++|+..|+. ........
T Consensus 58 vi~dr~---~~~~~v~~~~~~~~~~-~~~~~~~~l--~~~~~~~~~~i~l~~~~e~~~~R~~~r~r---~~~~~~~~--- 125 (173)
T 3kb2_A 58 VIIDRF---VYSNLVYAKKFKDYSI-LTERQLRFI--EDKIKAKAKVVYLHADPSVIKKRLRVRGD---EYIEGKDI--- 125 (173)
T ss_dssp EEEESC---HHHHHHHTTTBTTCCC-CCHHHHHHH--HHHHTTTEEEEEEECCHHHHHHHHHHHSC---SCCCHHHH---
T ss_pred eEEeee---ecchHHHHHHHHHhhH-hhHHHHHHH--hccCCCCCEEEEEeCCHHHHHHHHHhcCC---cchhhhHH---
Confidence 211111 1100000000000000 00000 000 00112357899999999999999988732 11111111
Q ss_pred HhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 202 VNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 202 ~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
+.+...|+..... ...++++|++++.+ ++++++.|...++.
T Consensus 126 -~~~~~~~~~~~~~-~~~~~~~id~~~~~---~~ev~~~I~~~~~~ 166 (173)
T 3kb2_A 126 -DSILELYREVMSN-AGLHTYSWDTGQWS---SDEIAKDIIFLVEL 166 (173)
T ss_dssp -HHHHHHHHHHHHT-CSSCEEEEETTTSC---HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhh-cCCCEEEEECCCCC---HHHHHHHHHHHHhC
Confidence 1122233332222 23589999977533 35777777777663
No 48
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.27 E-value=4.5e-12 Score=116.56 Aligned_cols=156 Identities=24% Similarity=0.254 Sum_probs=84.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCee
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKV 123 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~v 123 (542)
++|+|+|++||||||+|+.|++.||++++ ++|.+.+......... .... ++ ...++ ....+.+..+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i---~~d~~~~~~~g~~~~~-~~~~--~~-~~~~~-~~~~~~l~~l~----- 67 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFY---DVDEEVQKREGLSIPQ-IFEK--KG-EAYFR-KLEFEVLKDLS----- 67 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEE---EHHHHHHHHHTSCHHH-HHHH--SC-HHHHH-HHHHHHHHHHT-----
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE---ECcHHHHHHcCCCHHH-HHHH--hC-hHHHH-HHHHHHHHHHh-----
Confidence 37999999999999999999999998765 8998875321000000 0000 00 00000 11111122110
Q ss_pred ccceechhhchhcccccccCCCcEEEEEccccccChh---hhccCCEEEEEECCHHHHHHHhhhcchhhhcC---CHHHH
Q psy9618 124 DVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQ---VLELLDMKVFVDTDADVRLARRLKRDILARGR---DLEGV 197 (542)
Q Consensus 124 ~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~---l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr---~~~~v 197 (542)
....+||.+|......+. ....+|++|||++|.+++++|+.+|. .|.. ..+.+
T Consensus 68 -------------------~~~~~Vi~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~--~r~~~~~~~~~i 126 (168)
T 2pt5_A 68 -------------------EKENVVISTGGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSK--ERPLLKRPLDEI 126 (168)
T ss_dssp -------------------TSSSEEEECCHHHHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTT--CCBGGGSCGGGT
T ss_pred -------------------ccCCeEEECCCCEeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCC--CCCCCcchHHHH
Confidence 123456665532111121 12226899999999999999998763 1111 12223
Q ss_pred HHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 198 IKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 198 l~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
..+|.++ .+. +.. +|++| ++.. .++.+.++|.+.+.
T Consensus 127 ~~~~~~~-~~~-------~~~-~~~~i-~~~~---~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 127 KNLFEER-RKI-------YSK-ADIKV-KGEK---PPEEVVKEILLSLE 162 (168)
T ss_dssp HHHHHHH-HHH-------HTT-SSEEE-ECSS---CHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHH-------HHh-CCEEE-CCCC---CHHHHHHHHHHHHH
Confidence 3334322 111 233 89999 6643 33577777777665
No 49
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.27 E-value=8.9e-12 Score=116.88 Aligned_cols=173 Identities=18% Similarity=0.220 Sum_probs=89.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHH-HHHHhHc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLP-TLQRLKE 119 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~-~L~~lk~ 119 (542)
..+.+|.|+|++||||||+++.|++.||++++ +.|.+...+... ..+.. ..+. ..+.. ....+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i---~~D~~~~~~~~~---------~~~~~-~~~~-~~~~~~~~~~~~- 67 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLL---SKDAFKEVMFDG---------LGWSD-REWS-RRVGATAIMMLY- 67 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEE---EHHHHHHHHHHH---------HCCCS-HHHH-HHHHHHHHHHHH-
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEe---cHHHHHHHHHHh---------cCccc-hHHH-HHhhHHHHHHHH-
Confidence 45789999999999999999999999998765 788875422111 11111 1110 01110 001000
Q ss_pred CCeeccceechhhchhcccccccCCCcEEEEEccccccC--hhh---hc---cCCEEEEEECCHHHHHHHhhhcchhhhc
Q psy9618 120 GKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN--PQV---LE---LLDMKVFVDTDADVRLARRLKRDILARG 191 (542)
Q Consensus 120 g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~--~~l---~~---l~Dl~IfLdad~d~rl~Rrl~Rd~~~rg 191 (542)
..... .+.....+|+|+.+.... ..+ .. ..+++|||++|.+++++|..+|.... .
T Consensus 68 --------------~~~~~--~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~-~ 130 (193)
T 2rhm_A 68 --------------HTAAT--ILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQG-A 130 (193)
T ss_dssp --------------HHHHH--HHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTT-C
T ss_pred --------------HHHHH--HHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCcc-c
Confidence 00000 001123478888762110 011 21 12478999999999999998875311 1
Q ss_pred CCHHHHHHHHHh--hccchhhccccCCC-CcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 192 RDLEGVIKQYVN--MVKPAFSTFIAPSM-VHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 192 r~~~~vl~q~~~--~v~p~y~~~i~p~~-~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
+........|.. .+...+.. ..+.. ..++++|++++......+.+++.|.+.+.
T Consensus 131 r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Idt~~~~~~~~~~i~~~i~~~l~ 187 (193)
T 2rhm_A 131 RHPGHCDDRSPADLELVRSRGD-IPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHLQ 187 (193)
T ss_dssp C--------CHHHHHHHHHSCC-CCCCCCCSCEEEEECSSGGGCCHHHHHHHHHHHHH
T ss_pred cCcccccCccCcchhhHHHHhc-CCCccCCCCEEEEeCCCCcccCHHHHHHHHHHHHH
Confidence 111110011111 01112222 23333 36899999887444445677777766554
No 50
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.27 E-value=1.2e-11 Score=118.69 Aligned_cols=36 Identities=25% Similarity=0.502 Sum_probs=32.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
.|+|+|++||||||+|+.|++++|++++ ++|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i---~~d~~~r~ 37 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHI---STGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEE---EHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE---eHHHHHHH
Confidence 6899999999999999999999998765 89988874
No 51
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.25 E-value=3.4e-11 Score=115.62 Aligned_cols=182 Identities=15% Similarity=0.152 Sum_probs=88.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
.++|+|+|++||||||+++.||++||++++ + ++.++....+. . .....|..-+......+...+.. .....
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~---D-~~~~~~~a~~~-g---~~~~~~~~~~e~~~~~~~~~~~~-~~~~~ 76 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLY---S-KELLDEVAKDG-R---YSKEVLERFDEKPMNFAFIPVPA-GGTTI 76 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEE---C-HHHHHHTTCC-----------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEE---C-HHHHHHHHHhc-C---CCHHHHHHHhhhchhHHHHHhcc-ccccc
Confidence 469999999999999999999999999977 7 55654211000 0 00000100000000000000000 00000
Q ss_pred eccceechhhchhcccccccC--CCcEEEEEccc---cccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHH
Q psy9618 123 VDVPIYNFVTHSRETRTKPMY--GANVIIFEGIL---AFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGV 197 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~~~~~~--~~~vVIvEGi~---~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~v 197 (542)
...+.+.......+.+ +. ..+-+|++|.. ++.+. --.++|||+||.+++++|+.+|. +.+.++.
T Consensus 77 ~~~~~~~~~~~~~i~~---la~~~~~~~Vi~Gr~g~~vl~~~----~~~~~V~L~A~~e~r~~R~~~~~----~~~~~~~ 145 (201)
T 3fdi_A 77 SLEQDIAIRQFNFIRK---KANEEKESFVIVGRCAEEILSDN----PNMISAFILGDKDTKTKRVMERE----GVDEKTA 145 (201)
T ss_dssp ---CHHHHHHHHHHHH---HHHTSCCCEEEESTTHHHHTTTC----TTEEEEEEEECHHHHHHHHHHHH----TCCHHHH
T ss_pred cccHHHHHHHHHHHHH---HHhhcCCCEEEEECCcchhcCCC----CCeEEEEEECCHHHHHHHHHHHh----CCCHHHH
Confidence 0000000000011111 11 12236676642 23210 12489999999999999998763 3444433
Q ss_pred HHHHH---hhccchhhcc--ccC-CCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 198 IKQYV---NMVKPAFSTF--IAP-SMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 198 l~q~~---~~v~p~y~~~--i~p-~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
.+... +...+.|..+ ..| ....+|++|+++..+ ++++++.|...++.
T Consensus 146 ~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~---~eevv~~I~~~i~~ 198 (201)
T 3fdi_A 146 LNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVD---VDTATDMIIKYIDS 198 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSC---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCC---HHHHHHHHHHHHHH
Confidence 33222 2223334332 122 345689999988643 46888888877764
No 52
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.25 E-value=4.2e-11 Score=112.64 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=33.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH-cCCCeEEeecchhhhc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES-LNVPWVTLLSMDSFYR 82 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~-Lg~p~v~iIs~Ddfy~ 82 (542)
++.+|+|+|++||||||+++.|++. +|++++ ++|++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i---d~d~~~~ 47 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHL---EVGKLVK 47 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE---EHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe---eHHHHHH
Confidence 4578999999999999999999999 786655 8998875
No 53
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.24 E-value=3.4e-11 Score=112.57 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=87.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHH--HhccccCCCCCccccHHhHHHHHHHhHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKK--AAQNEYNFDHPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~--~~~~~~~fd~p~a~D~~lL~~~L~~lk~g 120 (542)
+.+|+|+|++||||||+|+.|++.||++++ ++|.+.+......... ...++..| .....+.+..+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i---~~d~~~~~~~g~~~~~~~~~~g~~~~-------~~~~~~~~~~~~~- 73 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILY---DSDKEIEKRTGADIAWIFEMEGEAGF-------RRREREMIEALCK- 73 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEE---EHHHHHHHHHTSCHHHHHHHHHHHHH-------HHHHHHHHHHHHH-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEE---EChHHHHHHcCCChhhHHHHhCHHHH-------HHHHHHHHHHHHh-
Confidence 468999999999999999999999998876 8998865311000000 00000000 0111122222211
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEccccccChhhhcc---CCEEEEEECCHHHHHHHhhhcchhhhcC--C--
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLEL---LDMKVFVDTDADVRLARRLKRDILARGR--D-- 193 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l---~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr--~-- 193 (542)
..+.++..|.....++..++. .+++|||++|.+++++|+..+....|+. .
T Consensus 74 -----------------------~~~~vi~~gg~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~ 130 (185)
T 3trf_A 74 -----------------------LDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNN 130 (185)
T ss_dssp -----------------------SSSCEEECCTTGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHH
T ss_pred -----------------------cCCcEEecCCceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCC
Confidence 123456666433334433322 2489999999999999983221112221 1
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
....+........+.|. +.||++|++++.+. +++++.|.+.+..
T Consensus 131 ~~~~l~~~~~~r~~~y~-------~~ad~~Idt~~~~~---~e~~~~I~~~l~~ 174 (185)
T 3trf_A 131 SKEKLQQLNEIRKPLYQ-------AMADLVYPTDDLNP---RQLATQILVDIKQ 174 (185)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHCSEEEECTTCCH---HHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHh-------hcCCEEEECCCCCH---HHHHHHHHHHHHH
Confidence 12233332222234443 34899999886433 5667777666653
No 54
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.24 E-value=6.5e-11 Score=115.69 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=49.0
Q ss_pred CEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHH---HHhhccchhhccc---cCCCCcccEEEECCCCCHHHHHHHHH
Q psy9618 166 DMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQ---YVNMVKPAFSTFI---APSMVHADIIVPRGGENCVAIDLIVQ 239 (542)
Q Consensus 166 Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q---~~~~v~p~y~~~i---~p~~~~ADiVI~~~~~n~~ai~~iv~ 239 (542)
.++|||+||.+++++|+.+|. +++.+...+. ..+...+.|..|. +.....+|++|+++..+ ++.+++
T Consensus 138 ~~~VfL~A~~e~r~~Ri~~~~----~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~---~eevv~ 210 (223)
T 3hdt_A 138 LIRIFVYTDKVKKVQRVMEVD----CIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLT---LEETAE 210 (223)
T ss_dssp EEEEEEECCHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCC---HHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCC---HHHHHH
Confidence 489999999999999998763 3444333332 2222334444331 22345799999988643 467788
Q ss_pred HHHHHHHHh
Q psy9618 240 HIHSQLQAV 248 (542)
Q Consensus 240 ~I~~~L~~k 248 (542)
.|...++.|
T Consensus 211 ~I~~~i~~~ 219 (223)
T 3hdt_A 211 LIKAYIRLK 219 (223)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888877753
No 55
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.24 E-value=7e-11 Score=114.98 Aligned_cols=170 Identities=20% Similarity=0.266 Sum_probs=94.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhc----H---HHHHHHhccccCCCCCccccHHhHH
Q psy9618 39 EQVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLN----E---EQHKKAAQNEYNFDHPDAFDFELLL 111 (542)
Q Consensus 39 ~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~----~---e~~~~~~~~~~~fd~p~a~D~~lL~ 111 (542)
+.+++.||.|.||+||||||+|+.|++++|++++ |+++.++.-- + ........+.. -|+.+-.+++.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI---stGdllR~~i~~~t~lg~~~~~~~~~G~l---Vpde~~~~lv~ 98 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL---SSGDLLRAEVQSGSPKGKELKAMMERGEL---VPLEVVLALLK 98 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE---CHHHHHHHHHTTCCHHHHHHHHHHHHTCC---CCHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE---cHHHHHHHHHHcCCchHHHHHHHHhcCCC---CCHHHHHHHHH
Confidence 4567899999999999999999999999998766 8988886310 0 00000011111 12222223333
Q ss_pred HHHHHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccc-cC----hhhhccCCEEEEEECCHHHHHHHhhhcc
Q psy9618 112 PTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAF-HN----PQVLELLDMKVFVDTDADVRLARRLKRD 186 (542)
Q Consensus 112 ~~L~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~-~~----~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd 186 (542)
+.|... .....-+|+||+--- .. .....-.+++|++++|.+++++|+..|.
T Consensus 99 ~~l~~~------------------------~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~ 154 (217)
T 3umf_A 99 EAMIKL------------------------VDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRA 154 (217)
T ss_dssp HHHHHH------------------------TTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC-
T ss_pred HHHhhc------------------------cccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccc
Confidence 222221 112234899995211 00 1112235799999999999999999985
Q ss_pred hhhhcCC--HHHH----HHHHHhhccchhhccccCCCCccc-EEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 187 ILARGRD--LEGV----IKQYVNMVKPAFSTFIAPSMVHAD-IIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 187 ~~~rgr~--~~~v----l~q~~~~v~p~y~~~i~p~~~~AD-iVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
.. .+|. .++. ++.|.+...|..+.|- +... +.|+.++ .++++.+.|.+.|++
T Consensus 155 ~~-~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~----~~~~l~~Idg~~----~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 155 ET-SNRVDDNEETIVKRFRTFNELTKPVIEHYK----QQNKVITIDASG----TVDAIFDKVNHELQK 213 (217)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTHHHHHHHH----TTTCEEEEETTS----CHHHHHHHHHHHHHT
T ss_pred cc-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----hcCCEEEEECCC----CHHHHHHHHHHHHHH
Confidence 42 2332 2222 3345555544433331 1122 3344332 457888888888763
No 56
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.23 E-value=4.6e-11 Score=117.78 Aligned_cols=40 Identities=20% Similarity=0.076 Sum_probs=35.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
..|++|+|+|++||||||+|+.|++++|++++ ++|+..+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i---s~~~~~r~ 66 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL---STGDLLRE 66 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEE---EHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEE---ecHHHHHH
Confidence 45789999999999999999999999997655 88888764
No 57
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.22 E-value=2.2e-10 Score=106.13 Aligned_cols=160 Identities=15% Similarity=0.134 Sum_probs=86.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccc-cHHhHHHHHHHhHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAF-DFELLLPTLQRLKEG 120 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~-D~~lL~~~L~~lk~g 120 (542)
.+.+|+|+|++||||||+++.|++.+|..++ +.|++.+. ........ ...+..+... .+..+.+.+..+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i---~~d~~~~~---~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-- 77 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFL---DGDFLHPR---RNIEKMAS-GEPLNDDDRKPWLQALNDAAFAMQ-- 77 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEE---EGGGGCCH---HHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEE---eCccccch---HHHHHhhc-CcCCCccccccHHHHHHHHHHHHH--
Confidence 4679999999999999999999999986544 88887642 11111111 1222110000 0111111111110
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEccccccC--hhhhccC-C-EEEEEECCHHHHHHHhhhcchhhhcCCHHH
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN--PQVLELL-D-MKVFVDTDADVRLARRLKRDILARGRDLEG 196 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~--~~l~~l~-D-l~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~ 196 (542)
..+ ..+|++..+.... ..+.+.+ + .+|||+||.+++++|...|+.... +.+.
T Consensus 78 ---------------------~~~-~~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~--~~~~ 133 (175)
T 1knq_A 78 ---------------------RTN-KVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF--KTQM 133 (175)
T ss_dssp ---------------------HHC-SEEEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCC--CHHH
T ss_pred ---------------------hcC-CcEEEEeCchHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCC--chHH
Confidence 011 2355664332211 1233333 6 689999999999999988863221 2222
Q ss_pred HHHHHHhhccchhhccccC-CCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 197 VIKQYVNMVKPAFSTFIAP-SMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 197 vl~q~~~~v~p~y~~~i~p-~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
...++.. .. .+ +...+|++|++++ .++.++++|.+.+.
T Consensus 134 ~~~~~~~-~~-------~~~~~~~~~~~Id~~~----~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 134 LVTQFET-LQ-------EPGADETDVLVVDIDQ----PLEGVVASTIEVIK 172 (175)
T ss_dssp HHHHHHH-CC-------CCCTTCTTEEEEECSS----CHHHHHHHHHHHHH
T ss_pred HHHHHHh-hh-------CcccCCCCeEEEeCCC----CHHHHHHHHHHHHh
Confidence 2233322 11 12 3456899999774 34577777776664
No 58
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.21 E-value=9.3e-11 Score=109.29 Aligned_cols=162 Identities=14% Similarity=0.163 Sum_probs=86.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCC-CccccHHhHHHHHHHh-Hc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH-PDAFDFELLLPTLQRL-KE 119 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~-p~a~D~~lL~~~L~~l-k~ 119 (542)
.+.+|+|+|++||||||+++.|++.+|.+++ ++|++++.. .....+.-.. ...++.+.+.+.+... ..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~---~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYI---NVGDLAREE-------QLYDGYDEEYDCPILDEDRVVDELDNQMRE 79 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEE---EHHHHHHHH-------TCEEEEETTTTEEEECHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEE---EHHHHHhhc-------chhhhhhhhhcCccCChHHHHHHHHHHHhc
Confidence 3467889999999999999999999997765 888876532 0000110000 0112222233333221 11
Q ss_pred CCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHH
Q psy9618 120 GKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIK 199 (542)
Q Consensus 120 g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~ 199 (542)
+ . +++++......+ ...+|.+|||+||.+++++|+..|+.. +.......
T Consensus 80 ------------------------g-~-~vv~~~~~~~~~--~~~~~~vi~L~~~~e~l~~R~~~r~~~-~~~~~~~~-- 128 (180)
T 3iij_A 80 ------------------------G-G-VIVDYHGCDFFP--ERWFHIVFVLRTDTNVLYERLETRGYN-EKKLTDNI-- 128 (180)
T ss_dssp ------------------------C-C-EEEECSCCTTSC--GGGCSEEEEEECCHHHHHHHHHHTTCC-HHHHHHHH--
T ss_pred ------------------------C-C-EEEEechhhhcc--hhcCCEEEEEECCHHHHHHHHHHcCCC-HHHHHHHH--
Confidence 1 1 223332111001 123689999999999999999887531 11111100
Q ss_pred HHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 200 QYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 200 q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
..+.+...|......+. +|++|++++.+..++...++.|...+++
T Consensus 129 -~~~~~~~~~~~~~~~y~--~~~~i~~~~~~~~ev~~~v~~i~~~l~~ 173 (180)
T 3iij_A 129 -QCEIFQVLYEEATASYK--EEIVHQLPSNKPEELENNVDQILKWIEQ 173 (180)
T ss_dssp -HHHHTTHHHHHHHHHSC--GGGEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHcC--CCeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 00111111111111111 5788877766766666667777777664
No 59
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.21 E-value=5.7e-11 Score=110.39 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=86.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccH-HhHHHHHHHhHcCC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDF-ELLLPTLQRLKEGK 121 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~-~lL~~~L~~lk~g~ 121 (542)
+.+|+|+|++||||||+|+.|++.||++++ ++|++++......... .|+..+...+ +...+.++.+.
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~---d~d~~~~~~~g~~~~~------~~~~~g~~~~~~~~~~~~~~l~--- 71 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLDLVFL---DSDFLIEQKFNQKVSE------IFEQKRENFFREQEQKMADFFS--- 71 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHTCEEE---EHHHHHHHHHTSCHHH------HHHHHCHHHHHHHHHHHHHHHT---
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEE---cccHHHHHHcCCCHHH------HHHHcCHHHHHHHHHHHHHHHH---
Confidence 347999999999999999999999998766 8998875310000000 0000000000 11111111111
Q ss_pred eeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcC--CHHHHHH
Q psy9618 122 KVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGR--DLEGVIK 199 (542)
Q Consensus 122 ~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr--~~~~vl~ 199 (542)
.....+|..|.....+..+ ...+.+|||++|.+++++|+.+|....+.. +.+.+..
T Consensus 72 ---------------------~~~~~vi~~g~~~~~~~~l-~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~ 129 (175)
T 1via_A 72 ---------------------SCEKACIATGGGFVNVSNL-EKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKK 129 (175)
T ss_dssp ---------------------TCCSEEEECCTTGGGSTTG-GGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHH
T ss_pred ---------------------ccCCEEEECCCCEehhhHH-hcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHH
Confidence 1123344435322111112 234799999999999999988773112221 1344444
Q ss_pred HHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 200 QYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 200 q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
.|.++ .|.|. ..++++|++++.+ ++++++.|.+.++
T Consensus 130 ~~~~r-~~~y~-------~~~~~~Idt~~~~---~eev~~~I~~~l~ 165 (175)
T 1via_A 130 LYNER-LSKYE-------QKANFILNIENKN---IDELLSEIKKVIK 165 (175)
T ss_dssp HHHHH-HHHHH-------HHCSEEEECTTCC---HHHHHHHHHHHHC
T ss_pred HHHHH-HHHHH-------hcCCEEEECCCCC---HHHHHHHHHHHHH
Confidence 44432 23332 3479999977533 4677888877665
No 60
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.20 E-value=1.9e-10 Score=109.50 Aligned_cols=158 Identities=17% Similarity=0.110 Sum_probs=88.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccH-HhHHHHHHHhHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDF-ELLLPTLQRLKEG 120 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~-~lL~~~L~~lk~g 120 (542)
.+.+|+|+|++||||||+++.|++.+|..+ ++.|++... .... .....+.|..+..+.+ ..+...+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~---i~~d~~~~~---~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~--- 97 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF---AEADAFHSP---ENIA-TMQRGIPLTDEDRWPWLRSLAEWMDAR--- 97 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE---EEGGGGSCH---HHHH-HHHTTCCCCHHHHHHHHHHHHHHHHHH---
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE---EcccccccH---HHHH-HHhcCCCCCCcccccHHHHHHHHHHHH---
Confidence 357999999999999999999999998644 488887642 1111 1122333432211111 1111111100
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEccccccChhhh----ccC--CEEEEEECCHHHHHHHhhhcchhhhcCCH
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVL----ELL--DMKVFVDTDADVRLARRLKRDILARGRDL 194 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~----~l~--Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~ 194 (542)
. ..+.. +|++..+.. +..+ ... ..+|||+||.+++++|+.+|+... ...
T Consensus 98 ---------------~-----~~g~~-viid~~~~~--~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~--~~~ 152 (200)
T 4eun_A 98 ---------------A-----DAGVS-TIITCSALK--RTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHF--MPA 152 (200)
T ss_dssp ---------------H-----HTTCC-EEEEECCCC--HHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCS--SCG
T ss_pred ---------------H-----hcCCC-EEEEchhhh--HHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCC--CCH
Confidence 0 01222 445543322 2222 211 267999999999999998886422 222
Q ss_pred HHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 195 EGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 195 ~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
+.+..++..+ ..++...++++|++++ .++++++.|.+.+.
T Consensus 153 ~~l~~~~~~~--------~~~~~~~~~~~Id~~~----~~~e~~~~I~~~l~ 192 (200)
T 4eun_A 153 SLLQSQLATL--------EALEPDESGIVLDLRQ----PPEQLIERALTWLD 192 (200)
T ss_dssp GGHHHHHHHC--------CCCCTTSCEEEEETTS----CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHh--------CCCCCCCCeEEEECCC----CHHHHHHHHHHHHH
Confidence 3333344332 2233455899999865 34677888877765
No 61
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.19 E-value=5e-11 Score=111.34 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=33.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
.+.+|+|+|++||||||+|+.|++.+|++++ ++|++.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i---~~d~~~~~ 41 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKL---STGDILRD 41 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEE---CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHH
Confidence 4579999999999999999999999997655 89888763
No 62
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.17 E-value=3.9e-11 Score=119.26 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=64.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhc-HHHHHHHhccccCCCCC-ccccHHhHHHHHHHhHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLN-EEQHKKAAQNEYNFDHP-DAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~-~e~~~~~~~~~~~fd~p-~a~D~~lL~~~L~~lk~g 120 (542)
..+|+|+|++||||||+++.|++.||++++ ++|.+++... ...... .|+.. ..+-.+.-.+.++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~---d~d~~~~~~~~g~~i~~------i~~~~ge~~fr~~e~~~l~~l~~- 117 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFF---DCDTLIEQAMKGTSVAE------IFEHFGESVFREKETEALKKLSL- 117 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEE---EHHHHHHHHSTTSCHHH------HHHHHCHHHHHHHHHHHHHHHHH-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEE---eCcHHHHHHhcCccHHH------HHHHhCcHHHHHHHHHHHHHHHh-
Confidence 458999999999999999999999998766 8898876432 100000 01000 00001112222332210
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEccccccChhhhcc--CCEEEEEECCHHHHHHHhhhc
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLEL--LDMKVFVDTDADVRLARRLKR 185 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l--~Dl~IfLdad~d~rl~Rrl~R 185 (542)
...+.||.+|-.....+..+.. .+++|||++|.+++++|+.+|
T Consensus 118 ----------------------~~~~~Via~GgG~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 118 ----------------------MYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp ----------------------HCSSEEEECCGGGGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC-
T ss_pred ----------------------hcCCcEEecCCCeecCHHHHHHHhCCcEEEEECCHHHHHHHHhhc
Confidence 0024466666433333322222 289999999999999998764
No 63
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.16 E-value=5.3e-11 Score=109.71 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=32.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
+.+|+|+|++||||||+|+.|++.||++++ ++|.+++
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~i---d~d~~~~ 38 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFV---DTDIFMQ 38 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEE---EHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEE---cccHHHH
Confidence 358999999999999999999999997755 8998875
No 64
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.15 E-value=2.1e-11 Score=115.06 Aligned_cols=76 Identities=16% Similarity=0.282 Sum_probs=47.6
Q ss_pred ccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHH-HHHHhhccchhhccccCCC-CcccEEEECCCCCHHHHHHHHHH
Q psy9618 163 ELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVI-KQYVNMVKPAFSTFIAPSM-VHADIIVPRGGENCVAIDLIVQH 240 (542)
Q Consensus 163 ~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl-~q~~~~v~p~y~~~i~p~~-~~ADiVI~~~~~n~~ai~~iv~~ 240 (542)
...|++|||++|.+++++|...|+ +..+... .++.+.+...|..+...+. ..++++|++++ .++.++++
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R~-----r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~----~~~~v~~~ 193 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKRG-----RSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL----DVKTQIEL 193 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHT-----CHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS----CHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcC-----ChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC----CHHHHHHH
Confidence 357899999999999999987763 2222110 1233333334443333333 56899999776 34677777
Q ss_pred HHHHHHH
Q psy9618 241 IHSQLQA 247 (542)
Q Consensus 241 I~~~L~~ 247 (542)
|.+.+.+
T Consensus 194 I~~~l~~ 200 (205)
T 2jaq_A 194 IMNKLNS 200 (205)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 65
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.14 E-value=2.1e-10 Score=110.77 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=34.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
.|++|.|.|++||||||+|+.|++.||.+++ ++|++++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i---~~d~~~~~ 42 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI---SAGDLLRA 42 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC---CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee---cHHHHHHH
Confidence 4678999999999999999999999997554 89988764
No 66
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.13 E-value=3.7e-10 Score=110.12 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=34.5
Q ss_pred CCCCCCccCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 29 GRPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 29 ~~ppw~~~~~~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
+.|+|-.. +....++.|.|.|++||||||+|+.|+++|+++++ ++|++++.
T Consensus 3 ~~~~~~p~-~~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i---~~d~li~~ 53 (233)
T 1ak2_A 3 NVPAAEPV-PESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHL---ATGDMLRA 53 (233)
T ss_dssp ------------CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEE---EHHHHHHH
T ss_pred CCCCCCCC-CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcee---cHHHHHHH
Confidence 45555432 22335678999999999999999999999997654 89988764
No 67
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.11 E-value=2.3e-10 Score=107.08 Aligned_cols=33 Identities=33% Similarity=0.279 Sum_probs=28.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDS 79 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Dd 79 (542)
++|+|+|++||||||+|+.|++.| |++++ ++|.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i---~~d~ 36 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS---LYRE 36 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE---EEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE---EEeC
Confidence 379999999999999999999998 77655 5553
No 68
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.08 E-value=7.9e-10 Score=106.53 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=34.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
.+++|+|.|++||||||+|+.|++.||++++ ++|++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i---~~d~~~~~ 41 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHL---ATGDMLRS 41 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEE---EHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEE---ehhHHHHH
Confidence 4678999999999999999999999997654 89998863
No 69
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.07 E-value=1.7e-10 Score=106.41 Aligned_cols=159 Identities=16% Similarity=0.214 Sum_probs=78.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCC--CccccHHhHHHHHHHhHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH--PDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~--p~a~D~~lL~~~L~~lk~g 120 (542)
+.+|+|+|++||||||+++.|++.++.+++ ++|.+.+........ ..|.. ...+. +.-...+..+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i---d~d~~~~~~~~~~i~------~i~~~~g~~~~~-~~~~~~l~~l~-- 71 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY---DSDQEIEKRTGADVG------WVFDLEGEEGFR-DREEKVINELT-- 71 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE---EHHHHHHHHHTSCHH------HHHHHHHHHHHH-HHHHHHHHHHH--
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE---eccHHHHHHhCcCHH------HHHHHHhHHHHH-HHHHHHHHHHH--
Confidence 468999999999999999999999997544 888876421100000 00000 00000 00001111111
Q ss_pred CeeccceechhhchhcccccccCCCcEEEEEc--ccccc-ChhhhccCCEEEEEECCHHHHHHHhhhcchhh--hcCC--
Q psy9618 121 KKVDVPIYNFVTHSRETRTKPMYGANVIIFEG--ILAFH-NPQVLELLDMKVFVDTDADVRLARRLKRDILA--RGRD-- 193 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEG--i~~~~-~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~--rgr~-- 193 (542)
...++++..| ..... ...+...++++||++++.+++.+|+.+|.... .+.+
T Consensus 72 ----------------------~~~~~v~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~ 129 (173)
T 1kag_A 72 ----------------------EKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPP 129 (173)
T ss_dssp ----------------------TSSSEEEECCTTGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSCCC
T ss_pred ----------------------hCCCeEEECCCeEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCch
Confidence 1123444432 22111 01223456899999999999999988874211 1122
Q ss_pred HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 194 LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 194 ~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
.+.+..++..+. |.| .+.||++|++++.+ +++++++|.+.++
T Consensus 130 ~~~~~~~~~~r~-~~~-------~~~a~~~id~~~~~---~~~~~~~i~~~l~ 171 (173)
T 1kag_A 130 REVLEALANERN-PLY-------EEIADVTIRTDDQS---AKVVANQIIHMLE 171 (173)
T ss_dssp HHHHHHHHHHHH-HHH-------HHHCSEEC-----C---HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-HHH-------HhhCCEEEECCCCC---HHHHHHHHHHHHH
Confidence 344444554322 333 24479999877433 3566666766553
No 70
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.06 E-value=6.6e-10 Score=103.62 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=32.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEeecchhhhch
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN-----VPWVTLLSMDSFYRV 83 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg-----~p~v~iIs~Ddfy~~ 83 (542)
+++|+|+|++||||||+++.|+++|+ +++ +++|++++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~---i~~~~~~r~ 45 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKM---VSFGSVMFE 45 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEE---EEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEE---EehHHHHHH
Confidence 46899999999999999999999998 544 488888764
No 71
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.06 E-value=4.1e-10 Score=104.36 Aligned_cols=39 Identities=28% Similarity=0.542 Sum_probs=33.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
+.+|.|+|+|||||||+++.|+++|+.+++ .++.|.+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~-~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWL-AFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEE-EEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeE-EeccchHhh
Confidence 468999999999999999999999998765 457888764
No 72
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.06 E-value=1.9e-09 Score=107.16 Aligned_cols=159 Identities=12% Similarity=0.148 Sum_probs=88.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccH-HhHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIES---LNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDF-ELLLPTLQR 116 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~---Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~-~lL~~~L~~ 116 (542)
..|.+|.|+|++||||||+|+.|++. +|++++ +++.|.+...+.. |+....-.+ ....+.++.
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i-~~~~D~~~~~l~~------------~~~~~e~~~~~~~~~~i~~ 68 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI-VLGSDLIRESFPV------------WKEKYEEFIKKSTYRLIDS 68 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE-EECTHHHHTTSSS------------CCGGGHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE-EECchHHHHHHhh------------hhHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999998 676543 3577877542210 221100000 001111111
Q ss_pred hHcCCeeccceechhhchhcccccccCCCcEEEEEccccccC--hhhhcc------CCEEEEEECCHHHHHHHhhhcchh
Q psy9618 117 LKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN--PQVLEL------LDMKVFVDTDADVRLARRLKRDIL 188 (542)
Q Consensus 117 lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~--~~l~~l------~Dl~IfLdad~d~rl~Rrl~Rd~~ 188 (542)
. +.. ..+|+||...... ..+..+ .+++|||++|.+++++|..+|..
T Consensus 69 ~------------------------l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~- 122 (260)
T 3a4m_A 69 A------------------------LKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE- 122 (260)
T ss_dssp H------------------------HTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC-
T ss_pred H------------------------hhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC-
Confidence 1 112 5688888544321 112221 26899999999999999888751
Q ss_pred hhcCCHHHHHHHHHhhccchhhccccCCC-CcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 189 ARGRDLEGVIKQYVNMVKPAFSTFIAPSM-VHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 189 ~rgr~~~~vl~q~~~~v~p~y~~~i~p~~-~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
..+.+.+...+..+..| ...+. ..++++|++++.. ..+.+++.|...+..
T Consensus 123 --~~~~~~l~~~~~~~e~~-----~~~~~~~~~~~~Id~~~~~--~~~ei~~~I~~~l~~ 173 (260)
T 3a4m_A 123 --KIPNEVIKKMYEKFDEP-----GKKYKWDEPFLIIDTTKDI--DFNEIAKKLIEKSKE 173 (260)
T ss_dssp --SSCHHHHHHHHHHCCCT-----TSSCGGGCCSEEEETTSCC--CHHHHHHHHHHHHTS
T ss_pred --CCCHHHHHHHHHHhcCc-----cccCCCCCCEEEEeCCCCC--CHHHHHHHHHhcccC
Confidence 12222222222221111 11111 3579999877621 346778888776654
No 73
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.05 E-value=2.7e-10 Score=109.88 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=32.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
++|.|.||+||||||+|+.|++++|++++ |+++.++
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~i---stGdllR 36 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHI---STGDILR 36 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEE---EHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEE---cHHHHHH
Confidence 47889999999999999999999998876 8999887
No 74
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.05 E-value=8.1e-10 Score=105.09 Aligned_cols=33 Identities=27% Similarity=0.201 Sum_probs=28.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
+..+++|+|+|++||||||+|+.|++.|+.+++
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 445689999999999999999999999986654
No 75
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.04 E-value=8.4e-10 Score=106.41 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=33.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
++.|+|.|++||||||+|+.|++.||++++ ++|++.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i---~~d~li~~ 42 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHL---STGDMLRE 42 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEE---EHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEE---ehhHHHHH
Confidence 468999999999999999999999997655 89988763
No 76
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.03 E-value=1.7e-09 Score=104.80 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=32.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
++|+|.|++||||||+|+.|++.||+++ +++|++.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~---i~~dd~~r~ 37 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAH---IESGGIFRE 37 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEE---EEHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeE---EchHHHHHH
Confidence 3689999999999999999999999654 489988764
No 77
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.02 E-value=6.8e-10 Score=107.63 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=34.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
.++++|+|+|++||||||+|+.|++.||++++ ++|++++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i---~~d~~~~~ 44 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHL---SSGDLLRD 44 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEE---EHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEE---echHHHHH
Confidence 34679999999999999999999999997655 89988764
No 78
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.01 E-value=9.3e-10 Score=105.00 Aligned_cols=181 Identities=18% Similarity=0.218 Sum_probs=86.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHc
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKE 119 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~ 119 (542)
+..+.+|+|+|+|||||||+++.|++.++..+.. +....-+.....+. ....+.|.+++ .+. +.+.+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~--~~~~ttR~~~~~e~---~g~~~~~~~~~-----~~~---~~~~~ 75 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRF--SISCTTRNKREKET---NGVDYYFVDKD-----DFE---RKLKE 75 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEE--CCEEECSCCCTTCC---BTTTEEECCHH-----HHH---HHHHT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceee--eeeecCCCCCCCCC---CCcceeeCCHH-----HHH---HHHHc
Confidence 4556899999999999999999999998521111 11000000000000 00012222221 111 12233
Q ss_pred CCeeccceechhhchhcccc--cccCCCcEEEEEccccccChhhhccC---C-EEEEEE-CCHHHHHHHhhhcchhhhcC
Q psy9618 120 GKKVDVPIYNFVTHSRETRT--KPMYGANVIIFEGILAFHNPQVLELL---D-MKVFVD-TDADVRLARRLKRDILARGR 192 (542)
Q Consensus 120 g~~v~~P~yd~~~~~~~~~~--~~~~~~~vVIvEGi~~~~~~~l~~l~---D-l~IfLd-ad~d~rl~Rrl~Rd~~~rgr 192 (542)
+.-+.+..+....+...... ..+.....+|+|+..... ..++..+ + ++|||+ +|.+++.+|+..|+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~-~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~----~ 150 (204)
T 2qor_A 76 GQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGV-KQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNT----E 150 (204)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHH-HHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT----S
T ss_pred CCCEEeHHhCCCeecCCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC----C
Confidence 44444433322211111100 011234567887532211 1233333 3 789999 899999999877752 1
Q ss_pred CHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 193 DLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 193 ~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
+.+.+...+.....+.... +...+|++|.|+ .++.+++.|.+.+..
T Consensus 151 ~~~~i~~rl~~~~~~~~~~----~~~~~d~vi~n~-----~~e~~~~~i~~~i~~ 196 (204)
T 2qor_A 151 KPEEINKRMQELTREMDEA----DKVGFNYFIVND-----DLARTYAELREYLLG 196 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHH----HHHTCSEEEECS-----SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh----hhccCcEEEECc-----CHHHHHHHHHHHHHH
Confidence 2333332222211111000 234578898875 345666667666653
No 79
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.00 E-value=1.2e-09 Score=105.01 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
.|+|+|++||||||+|+.|++.+|++++ ++|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i---~~d~~~r~ 37 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQI---STGDMLRA 37 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEE---EHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE---eHHHHHHH
Confidence 5899999999999999999999997755 89888763
No 80
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.99 E-value=1.5e-09 Score=101.26 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=31.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCe--EEeecchhhhc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPW--VTLLSMDSFYR 82 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~--v~iIs~Ddfy~ 82 (542)
|++|+|+|++||||||+|+.|+++|+... +..+++|++..
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~ 42 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML 42 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence 46899999999999999999999997221 23446777653
No 81
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.99 E-value=5.2e-09 Score=99.14 Aligned_cols=75 Identities=15% Similarity=0.282 Sum_probs=46.8
Q ss_pred CCEEEEEECCHHHHHHHhh-hcchhhh---c------CC-HHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHH
Q psy9618 165 LDMKVFVDTDADVRLARRL-KRDILAR---G------RD-LEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVA 233 (542)
Q Consensus 165 ~Dl~IfLdad~d~rl~Rrl-~Rd~~~r---g------r~-~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~a 233 (542)
.|++|||++|.+++++|+. +|+...+ | .+ .+.. ..+.+++.+.|..+... ..+++|++++ .
T Consensus 122 ~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~~d~~e~~-~~~~~r~~~~~~~~~~~---~~~~~Id~~~----~ 193 (213)
T 2plr_A 122 PDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSPEEGF-LKYQGLITEVYDKLVKD---ENFIVIDGTK----T 193 (213)
T ss_dssp CSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTTSCHHHHH-HHHHHHHHHHHHHHTTT---TTCEEEETTS----C
T ss_pred CCEEEEEeCCHHHHHHHHhcccccccccccccccccccchhhhH-HHHHHHHHHHHHHHHhh---CCEEEEECCC----C
Confidence 6899999999999999998 7752111 1 11 2221 34555555555554332 2678888764 3
Q ss_pred HHHHHHHHHHHHHH
Q psy9618 234 IDLIVQHIHSQLQA 247 (542)
Q Consensus 234 i~~iv~~I~~~L~~ 247 (542)
++.+++.|.+.+..
T Consensus 194 ~e~v~~~I~~~l~~ 207 (213)
T 2plr_A 194 PKEIQIQIRKFVGE 207 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46777777776654
No 82
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.98 E-value=9.2e-10 Score=107.86 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=68.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHH-----HHHHHhccccCCCCCccccHHhHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEE-----QHKKAAQNEYNFDHPDAFDFELLLPTLQR 116 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e-----~~~~~~~~~~~fd~p~a~D~~lL~~~L~~ 116 (542)
+.+..||.|++||||||+|+.|++.+|++++ ++|++++..... ...+..... .---|+.+-.+++.+.|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~i---s~gdllR~~~~~~t~lG~~i~~~~~~-G~lvpdei~~~ll~~~l~~ 82 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQI---STGDMLRAAVKAGTPLGVEAKTYMDE-GKLVPDSLIIGLVKERLKE 82 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEE---CHHHHHHHHHHTTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHS
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCee---echHHHHHhccCCChHHHHHHHHHhh-ccccccHHHHHHHHHHHhC
Confidence 3468999999999999999999999998876 999888742110 000111100 0001222222222222221
Q ss_pred hHcCCeeccceechhhchhcccccccCCCcEEEEEccccc-cCh-hhh---ccCCEEEEEECCHHHHHHHhhhcch
Q psy9618 117 LKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAF-HNP-QVL---ELLDMKVFVDTDADVRLARRLKRDI 187 (542)
Q Consensus 117 lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~-~~~-~l~---~l~Dl~IfLdad~d~rl~Rrl~Rd~ 187 (542)
. ...+-+|+||.--. ... .+. ...|.+|||++|.+++++|+..|..
T Consensus 83 ~-------------------------~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~ 133 (230)
T 3gmt_A 83 A-------------------------DCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRT 133 (230)
T ss_dssp G-------------------------GGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEE
T ss_pred c-------------------------ccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCc
Confidence 0 00123788995221 111 122 2368999999999999999999964
No 83
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.97 E-value=2.9e-09 Score=99.91 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc---CCCeE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL---NVPWV 72 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L---g~p~v 72 (542)
++|+|+|++||||||+++.|++.| |++.+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 379999999999999999999999 87755
No 84
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.97 E-value=8.4e-11 Score=114.68 Aligned_cols=188 Identities=15% Similarity=0.169 Sum_probs=86.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc-hhcHHHHHHHhccccCCCCCcc--c--cHHhHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-VLNEEQHKKAAQNEYNFDHPDA--F--DFELLLPTLQ 115 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~-~l~~e~~~~~~~~~~~fd~p~a--~--D~~lL~~~L~ 115 (542)
....+|+|.|++||||||+++.|+.. +-. +.+...+.... ....+.. +. ..+..+.. + ....+...+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~-v~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~q~~~l~~~~~ 90 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KND-ICLLTEPVEKWRNVNGVNL-LE----LMYKDPKKWAMPFQSYVTLTMLQ 90 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTT-EEEECCTHHHHTCBTTBCH-HH----HHHHSHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCC-eEEEecCHHHhhcccCCCh-HH----HHHhChHhhhhhhHHHHHHHHHH
Confidence 44689999999999999999999876 322 33333321110 0000000 00 00000000 0 0011111222
Q ss_pred Hh---------HcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEEECCHHHHHHHhhhcc
Q psy9618 116 RL---------KEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRD 186 (542)
Q Consensus 116 ~l---------k~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd 186 (542)
.. ..++.+..+.|.|..+..+.. .+....+.++++++.+..+.....+|++|||++|.+++++|+.+|+
T Consensus 91 ~~~~~~i~~~l~~~r~v~~dry~~s~~ayq~~--~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~~R~ 168 (230)
T 2vp4_A 91 SHTAPTNKKLKIMERSIFSARYCFVENMRRNG--SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRA 168 (230)
T ss_dssp HHHCCCCSSEEEEESCHHHHHHTHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHHC
T ss_pred HHHhccccCceeecCCccccHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 22 122334455566655544321 2233344555555443222234568999999999999999988775
Q ss_pred hh-hhcCCHHHHHHHHHhhccchhhccccCC--CCccc-EEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 187 IL-ARGRDLEGVIKQYVNMVKPAFSTFIAPS--MVHAD-IIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 187 ~~-~rgr~~~~vl~q~~~~v~p~y~~~i~p~--~~~AD-iVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
.. ++..+ ..|.+.+...|..+...+ ...++ ++|++++ .++++.++|.+.++
T Consensus 169 r~~e~~~~-----~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~----~~eev~~~I~~~l~ 223 (230)
T 2vp4_A 169 RSEESCVP-----LKYLQELHELHEDWLIHQRRPQSCKVLVLDADL----NLENIGTEYQRSES 223 (230)
T ss_dssp CGGGTTCC-----HHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC------------------
T ss_pred CcccccCc-----HHHHHHHHHHHHHHHHHhcccCCCCEEEEECCC----CHHHHHHHHHHHHH
Confidence 32 11111 134444555555554332 23444 7777654 34566666666555
No 85
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.95 E-value=4.5e-09 Score=100.02 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=27.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
+++++|+|+|++||||||+++.|+++|+.+++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 35689999999999999999999999875544
No 86
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.94 E-value=1.2e-11 Score=127.27 Aligned_cols=127 Identities=15% Similarity=0.104 Sum_probs=88.3
Q ss_pred hhhhcc-ccccccccccccccc-cccccccCceEEEEeccccccChH----------HHhhhcccccccccccCCCCchh
Q psy9618 302 YIRRMW-SVDVPIYNFVTHSRE-TRTKPMYGANVIIFEGILAFHNPQ----------VLERGFKLRPTLAQSYAGQPLPE 369 (542)
Q Consensus 302 ~~~~g~-~v~~P~y~f~~~~r~-~~~~~~~~~~vii~EGi~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 369 (542)
.|++|+ +|.+|+|||.+|.|. .++..+++.+||||||+++|+++. ++++
T Consensus 166 ~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~------------------- 226 (321)
T 3tqc_A 166 AIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDF------------------- 226 (321)
T ss_dssp HHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGG-------------------
T ss_pred hhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhh-------------------
Confidence 456788 999999999999985 456778999999999999999873 4443
Q ss_pred hhccCCCCCCceeecccCCcchhhhhhhcccccCcchhccccCCCCCCceeecCCChh------hhhHHhHhhc-cCCCh
Q psy9618 370 ALALLPETPQIKGLHTAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQ------IKGLHTFIRN-KDTSR 442 (542)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pq------l~~l~tilRd-~~t~~ 442 (542)
.|+++||+++.++|+.|++.||..+||+.... |++ ++.+-.+ ......+... ..++.
T Consensus 227 --------~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~------~~s--~~~~y~~~s~~ea~~~a~~~w~~~~~pn~ 290 (321)
T 3tqc_A 227 --------FDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKD------PHS--YFHYLTQMSETEVAAFAKHVWNEINKVNL 290 (321)
T ss_dssp --------CSEEEEEECCHHHHHHHHHHHHHHHHHTGGGS------TTS--TTGGGGGSCHHHHHHHHHHHHHHTHHHHH
T ss_pred --------cCeEEEEECCHHHHHHHHHHhcchhhhhhccC------hHH--HHHHHhcCCHHHHHHHHHHHHHhccccCH
Confidence 59999999999999999999999999854322 010 1000000 1111122222 23566
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q psy9618 443 DEFIFYSKRLIRLVIEFALSL 463 (542)
Q Consensus 443 ~~Fv~~~~rla~llie~al~~ 463 (542)
.+||+|++..|++++..+-++
T Consensus 291 ~~~I~ptr~~Adlil~~g~~~ 311 (321)
T 3tqc_A 291 MENILPYKNRAQLILEKAADH 311 (321)
T ss_dssp HHHTGGGGGGCSEEEEECTTS
T ss_pred HHhCccCccCceEEEecCCCC
Confidence 678888887777776655443
No 87
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.93 E-value=7e-09 Score=96.23 Aligned_cols=31 Identities=32% Similarity=0.318 Sum_probs=23.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
+|++|+|+|++||||||+|+.|++.||.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4679999999999999999999999998755
No 88
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.87 E-value=6.2e-08 Score=94.62 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=45.4
Q ss_pred cCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHH
Q psy9618 164 LLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 164 l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~ 243 (542)
..|++|||++|.+++++|+.+|+.. .++. +.....|.+++...|......+ ....++|++++ .++++.+.|.+
T Consensus 148 ~pd~vi~L~~~~e~~~~R~~~R~~~-~dr~-e~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~----s~eev~~~I~~ 220 (229)
T 4eaq_A 148 YPDLTIYLNVSAEVGRERIIKNSRD-QNRL-DQEDLKFHEKVIEGYQEIIHNE-SQRFKSVNADQ----PLENVVEDTYQ 220 (229)
T ss_dssp CCSEEEEEECCHHHHHHHHHHC------CC-CHHHHHHHHHHHHHHHHHTTTC-TTTEEEEETTS----CHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCC-ccch-hhhhHHHHHHHHHHHHHHHHhC-CCCEEEEeCCC----CHHHHHHHHHH
Confidence 4689999999999999999888532 1221 1112334444555555543322 23456677654 34677777777
Q ss_pred HHHH
Q psy9618 244 QLQA 247 (542)
Q Consensus 244 ~L~~ 247 (542)
.+.+
T Consensus 221 ~l~~ 224 (229)
T 4eaq_A 221 TIIK 224 (229)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 89
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.85 E-value=2e-08 Score=93.34 Aligned_cols=38 Identities=32% Similarity=0.394 Sum_probs=30.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSF 80 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Ddf 80 (542)
...+|+|+|++||||||+++.|++.| |++++ .++.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i-~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY-TLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE-EEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEE-EECChHH
Confidence 35789999999999999999999998 87755 2344444
No 90
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.83 E-value=2.4e-08 Score=94.77 Aligned_cols=41 Identities=29% Similarity=0.250 Sum_probs=31.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeE--Eeecchhhhc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWV--TLLSMDSFYR 82 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v--~iIs~Ddfy~ 82 (542)
.+.+|+|+|+|||||||+++.|++.++.+.. ..++.|++.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 3579999999999999999999999942211 2457777754
No 91
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.81 E-value=5.3e-08 Score=91.04 Aligned_cols=40 Identities=33% Similarity=0.340 Sum_probs=31.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCe--EEeecchhhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPW--VTLLSMDSFY 81 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~--v~iIs~Ddfy 81 (542)
.+.+|+|+|++||||||+++.|++.|+... +.+++.|.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 468999999999999999999999985321 3355777664
No 92
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.80 E-value=2.4e-09 Score=98.85 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=30.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH-HcCCCeEEeecchhhhc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIE-SLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~-~Lg~p~v~iIs~Ddfy~ 82 (542)
|.+|.|+|++||||||+|+.|++ .+|+. .+++|.+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~---~i~~d~~r~ 39 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY---NINRDDYRQ 39 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEE---EECHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcE---EecHHHHHH
Confidence 57899999999999999999999 56643 458887754
No 93
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.76 E-value=5.8e-09 Score=105.03 Aligned_cols=153 Identities=13% Similarity=0.005 Sum_probs=80.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccH--Hh-HHHHHHHhH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL-NVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDF--EL-LLPTLQRLK 118 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L-g~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~--~l-L~~~L~~lk 118 (542)
|.+|.|+|++||||||+|+.|++++ |+ ..|++|.+...+.. ....+ ...++. +. ..+.+..+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~---~~i~~D~~r~~~~~--------~~~g~--~~~~~~~~~~~~~~~~~~~- 67 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGF---YNINRDDYRQSIMA--------HEERD--EYKYTKKKEGIVTGMQFDT- 67 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTE---EEECHHHHHHHHTT--------SCCCC-----CCHHHHHHHHHHHHHH-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCc---EEecccHHHHHhcc--------CCccc--ccccchhhhhHHHHHHHHH-
Confidence 4789999999999999999999985 54 35599966532110 00000 001111 11 11111110
Q ss_pred cCCeeccceechhhchhcccccc-cCCCcEEEEEccccccC--hhhhcc-----C-CEEEEEECCHHHHHHHhhhcchhh
Q psy9618 119 EGKKVDVPIYNFVTHSRETRTKP-MYGANVIIFEGILAFHN--PQVLEL-----L-DMKVFVDTDADVRLARRLKRDILA 189 (542)
Q Consensus 119 ~g~~v~~P~yd~~~~~~~~~~~~-~~~~~vVIvEGi~~~~~--~~l~~l-----~-Dl~IfLdad~d~rl~Rrl~Rd~~~ 189 (542)
...... ......+|+||...... ..+.++ + ..+|||++|.+++++|..+|...
T Consensus 68 -----------------~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~- 129 (301)
T 1ltq_A 68 -----------------AKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK- 129 (301)
T ss_dssp -----------------HHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGG-
T ss_pred -----------------HHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCC-
Confidence 000000 02235689999754311 122221 2 27899999999999999988642
Q ss_pred hcCCHHHHHHHHHhhccchhhc-cccCCCCcccEEEECCC
Q psy9618 190 RGRDLEGVIKQYVNMVKPAFST-FIAPSMVHADIIVPRGG 228 (542)
Q Consensus 190 rgr~~~~vl~q~~~~v~p~y~~-~i~p~~~~ADiVI~~~~ 228 (542)
..+.+.+.+++..+..+.... |+........++++.++
T Consensus 130 -~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~iD~dg 168 (301)
T 1ltq_A 130 -AVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDG 168 (301)
T ss_dssp -CCCHHHHHHHHHHHHHHHTCCCCCCCTTSCEEEEEETBT
T ss_pred -CCCHHHHHHHHHHHhcccCCcceeccccccceEEEeCCC
Confidence 234455555554443332211 22222223456666665
No 94
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.73 E-value=9.6e-09 Score=97.10 Aligned_cols=176 Identities=19% Similarity=0.200 Sum_probs=74.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhHcCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk~g~~ 122 (542)
+.+|+|+|++||||||+++.|++.+. +...+ ......+....... ....+.|.++.. +.. ....+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~-~~~~~-~i~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~---~~~~~~~ 72 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPS-TSYKY-SISMTTRQMREGEV---DGVDYFFKTRDA-----FEA---LIKDDQF 72 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTT-CCEEC-CCCEECSCCCTTCC---BTTTBEECCHHH-----HHH---HHHTTCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC-CCeEE-ecccccCCCCCCcc---CCCceEEcCHHH-----HHH---HHHcCCe
Confidence 46999999999999999999988762 22210 11111110000000 001233322221 111 1234455
Q ss_pred eccceechhhchhccc--ccccCCCcEEEEEccccccChhhhccC-C-EEEEEE-CCHHHHHHHhhhcchhhhcCCHHHH
Q psy9618 123 VDVPIYNFVTHSRETR--TKPMYGANVIIFEGILAFHNPQVLELL-D-MKVFVD-TDADVRLARRLKRDILARGRDLEGV 197 (542)
Q Consensus 123 v~~P~yd~~~~~~~~~--~~~~~~~~vVIvEGi~~~~~~~l~~l~-D-l~IfLd-ad~d~rl~Rrl~Rd~~~rgr~~~~v 197 (542)
+..+.+....+..... ...+.....+|+|+.+... ..+...+ | +.||+. ++.+++.+|+..|+.. +.+.+
T Consensus 73 ~~~~~~~~~~~g~~~~~i~~~l~~g~~vv~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~----~~~~~ 147 (207)
T 2j41_A 73 IEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGA-KQVRKKFPDALFIFLAPPSLEHLRERLVGRGTE----SDEKI 147 (207)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCGGGH-HHHHHHCTTSEEEEEECCC-----------------------
T ss_pred EEEEeECCeecCCCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCC----CHHHH
Confidence 5555554321111100 0111224678999976543 3344555 6 456665 5688999998877521 11221
Q ss_pred HHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 198 IKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 198 l~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
...+.. ..+.. .....+|++|.|+ .++.+.++|.+.+..
T Consensus 148 ~~rl~~-~~~~~-----~~~~~~d~vI~n~-----~~e~~~~~i~~~l~~ 186 (207)
T 2j41_A 148 QSRINE-ARKEV-----EMMNLYDYVVVND-----EVELAKNRIQCIVEA 186 (207)
T ss_dssp ---------CGG-----GGGGGCSEEEECS-----SHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHH-----hccccCCEEEECC-----CHHHHHHHHHHHHHH
Confidence 111111 11111 1235689999875 246777777777654
No 95
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.71 E-value=2.8e-08 Score=95.19 Aligned_cols=39 Identities=33% Similarity=0.295 Sum_probs=31.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhhhc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYR 82 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg----~p~v~iIs~Ddfy~ 82 (542)
+.+|+|+|++||||||+++.|++.|+ .+ +..++.|.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~-~~~~~~d~~r~ 67 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVH-AYRLDGDNIRF 67 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCC-EEEECHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCc-EEEECChHHhh
Confidence 57899999999999999999999885 33 33557776654
No 96
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.71 E-value=2.9e-08 Score=109.04 Aligned_cols=163 Identities=21% Similarity=0.289 Sum_probs=87.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHHHhH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLK 118 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~~lk 118 (542)
+.+++|+++|++||||||+|+.|++.|+.. .+.+++.|.+.+.+ .++..|... +.....+.+..+.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l---------~~~~~f~~~---er~~~l~~i~~~~ 437 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHL---------SRGLGFSKE---DRITNILRVGFVA 437 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHT---------CTTCCSSHH---HHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhh---------cccccccHH---HHHHHHHHHHHHH
Confidence 346899999999999999999999998631 24466877764322 122233211 1111111111100
Q ss_pred cCCeeccceechhhchhcccccccCCCcEEEEEccccccC--hhhhccC---C-EEEEEECCHHHHHHHhhhcchhhhcC
Q psy9618 119 EGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN--PQVLELL---D-MKVFVDTDADVRLARRLKRDILARGR 192 (542)
Q Consensus 119 ~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~--~~l~~l~---D-l~IfLdad~d~rl~Rrl~Rd~~~rgr 192 (542)
... +.....+|++++..+.. ..+++++ | ++|||++|.+++++|.. |+....
T Consensus 438 --------------~~~------l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~-r~~~~~-- 494 (546)
T 2gks_A 438 --------------SEI------VKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV-KGLYKK-- 494 (546)
T ss_dssp --------------HHH------HHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC-SSHHHH--
T ss_pred --------------HHH------HhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh-cccccc--
Confidence 000 01224678887655432 2233443 6 88999999999999975 332111
Q ss_pred CHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 193 DLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 193 ~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
+..+.++.+.. +...| ..+ ..+|++|++++.+ +++++++|.+.|++
T Consensus 495 ~~~~~i~~~~~-vr~~~---e~~--~~adivIDts~~s---~eev~~~I~~~L~~ 540 (546)
T 2gks_A 495 AKEGLIKGFTG-VDDPY---EPP--VAPEVRVDTTKLT---PEESALKILEFLKK 540 (546)
T ss_dssp C------CCBT-TTBCC---CCC--SSCSEEEETTTSC---HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHh-hhhcc---ccc--cCCcEEEECCCCC---HHHHHHHHHHHHHH
Confidence 11112221111 11111 111 5689999986433 35778888777764
No 97
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.70 E-value=8e-08 Score=90.69 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
...+|+|+|++||||||+++.|+..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999998863
No 98
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.69 E-value=7.3e-08 Score=90.90 Aligned_cols=31 Identities=32% Similarity=0.267 Sum_probs=27.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc-CCCeE
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL-NVPWV 72 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L-g~p~v 72 (542)
++++|+|+|++||||||+++.|++.| |++++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~ 34 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIK 34 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceE
Confidence 46799999999999999999999999 56544
No 99
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.69 E-value=1.2e-07 Score=104.61 Aligned_cols=41 Identities=32% Similarity=0.373 Sum_probs=33.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEeecchhhhc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYR 82 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg----~p~v~iIs~Ddfy~ 82 (542)
.++++|.|+|.+||||||+|+.|++.|+ .+ +..++.|.+.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~-~~~lD~D~ir~ 438 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRS-VSLLLGDTVRH 438 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSC-EEEEEHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCce-EEEECcHHHHH
Confidence 4568999999999999999999999997 34 34667787654
No 100
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.68 E-value=1.6e-07 Score=104.22 Aligned_cols=161 Identities=20% Similarity=0.224 Sum_probs=84.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhhhchhcHHHHHHHhccccCCCC-CccccHHhHHHHHHHh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH-PDAFDFELLLPTLQRL 117 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~-p~a~D~~lL~~~L~~l 117 (542)
++.+|.|+|.+||||||+|+.|++.| |.+++ .++.|.+...+. ....|+. ...-.+..+.+.++.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v-~lDgD~iR~~L~---------~~~~fs~~dree~~r~i~eva~~~ 120 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY-TLDGDNIRQGLN---------KNLGFSPEDREENVRRIAEVAKLF 120 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE-EESHHHHTTTTT---------TTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEE-EechHHhhhccC---------ccccCChhhhHHHHHHHHHHHHHH
Confidence 46899999999999999999999999 88765 345554432111 1112321 0000111111111111
Q ss_pred HcCCeeccceechhhchhcccccccCCCcEEEEEccccc--cChhhhcc------CCEEEEEECCHHHHHHHhhhcchhh
Q psy9618 118 KEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAF--HNPQVLEL------LDMKVFVDTDADVRLARRLKRDILA 189 (542)
Q Consensus 118 k~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~--~~~~l~~l------~Dl~IfLdad~d~rl~Rrl~Rd~~~ 189 (542)
. ....+|+.++...+ ..+.++.+ -++.|||++|.+++++|..++...
T Consensus 121 l------------------------~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~- 175 (630)
T 1x6v_B 121 A------------------------DAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYK- 175 (630)
T ss_dssp H------------------------HTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHH-
T ss_pred H------------------------hCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccch-
Confidence 0 11134444433222 11222222 246899999999999997643221
Q ss_pred hcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHHh
Q psy9618 190 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQAV 248 (542)
Q Consensus 190 rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~k 248 (542)
+.+.. ....+ ..+.+.|+. ...+|++|++++.+ ++++++.|.+.|.++
T Consensus 176 ~aR~~--~~~~~-~~~~~~Ye~-----p~~~dlvIDts~~s---~eevv~~Il~~L~~~ 223 (630)
T 1x6v_B 176 KARAG--EIKGF-TGIDSEYEK-----PEAPELVLKTDSCD---VNDCVQQVVELLQER 223 (630)
T ss_dssp HHTTC------C-BTTTBCCCC-----CSSCSEEEETTSSC---HHHHHHHHHHHHHHT
T ss_pred hhhhh--hHHHH-HHhhhhhcc-----cCCCcEEEECCCCC---HHHHHHHHHHHHHhc
Confidence 11110 11111 112222321 24679999877533 357788888887764
No 101
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.61 E-value=6.5e-08 Score=95.78 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=31.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 81 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy 81 (542)
|.+|+|+|++||||||+|+.|+++++.+.+ ++|++.
T Consensus 1 M~li~I~G~~GSGKSTla~~La~~~~~~~i---~~D~~~ 36 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQETGWPVV---ALDRVQ 36 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCCEE---ECCSGG
T ss_pred CeEEEEECCCCcCHHHHHHHHHhcCCCeEE---eccHHh
Confidence 368999999999999999999999997654 899864
No 102
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.59 E-value=3.2e-09 Score=110.12 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=78.4
Q ss_pred cccccccccccccccccccccccC-ceEEEEeccccccCh----HHHhhhcccccccccccCCCCchhhhccCCCCCC--
Q psy9618 307 WSVDVPIYNFVTHSRETRTKPMYG-ANVIIFEGILAFHNP----QVLERGFKLRPTLAQSYAGQPLPEALALLPETPQ-- 379 (542)
Q Consensus 307 ~~v~~P~y~f~~~~r~~~~~~~~~-~~vii~EGi~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 379 (542)
++|.+|.|||.+|.|.+.+..+.| ..|||||||+.|++. .+++++ |
T Consensus 235 ~~v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~---------------------------D~~ 287 (359)
T 2ga8_A 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTL---------------------------ADT 287 (359)
T ss_dssp CCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHH---------------------------HTT
T ss_pred ceEeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhcc---------------------------ccc
Confidence 789999999999999888888877 699999999999984 455554 6
Q ss_pred ---ceeecccCCcchhhhhhhcccccCcc--hhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHHHHHH
Q psy9618 380 ---IKGLHTAGNRTRVSRVLLRGFKLRPT--LAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIR 454 (542)
Q Consensus 380 ---~~~~~~~~~~~rl~rr~~Rd~~~r~~--~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~rla~ 454 (542)
+++||+++.++++.|++.|++. +|. +.+.. ...+..+..++. +||.+..+.|+
T Consensus 288 ~~~~~i~Vdad~ev~~~Rli~R~~~-~Gl~~s~eea--------------------~~r~~~~d~pN~-~~I~~~~~~ad 345 (359)
T 2ga8_A 288 GALLVYKIDIDYEATEERVAKRHLQ-SGLVTTIAEG--------------------REKFRSNDLLNG-RDIDNHLIKVD 345 (359)
T ss_dssp TCEEEEEEECCHHHHHHHHHHHHHH-TTSCSSHHHH--------------------HHHHHHCTTTSS-HHHHHTBCCCT
T ss_pred cceEEEEEECCHHHHHHHHHHhhhc-cCCCCCHHHH--------------------HHHHHhcCchhh-HhHhhcCCCCC
Confidence 8999999999999999999985 665 44431 333445555544 78888776665
Q ss_pred HH
Q psy9618 455 LV 456 (542)
Q Consensus 455 ll 456 (542)
++
T Consensus 346 ~i 347 (359)
T 2ga8_A 346 NI 347 (359)
T ss_dssp TE
T ss_pred EE
Confidence 54
No 103
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.58 E-value=5.2e-08 Score=95.85 Aligned_cols=75 Identities=17% Similarity=0.315 Sum_probs=40.7
Q ss_pred cCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHH
Q psy9618 164 LLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 164 l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~ 243 (542)
..|++|||++|+++.++|+.+|+...+ .+..-..|.+.+...|..+..... . .++|+.++ .++++.+.|.+
T Consensus 154 ~PDlvi~Ldv~~e~~~~Ri~~R~~~dr---~E~~~~~~~~rv~~~y~~la~~~~-~-~~vIDa~~----sieeV~~~I~~ 224 (236)
T 3lv8_A 154 KPDLTLYLDIDPKLGLERARGRGELDR---IEKMDISFFERARERYLELANSDD-S-VVMIDAAQ----SIEQVTADIRR 224 (236)
T ss_dssp CCSEEEEEECCHHHHHHC-----CCCT---TTTSCHHHHHHHHHHHHHHHHHCT-T-EEEEETTS----CHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCcch---hhhhHHHHHHHHHHHHHHHHHHCC-C-EEEEeCCC----CHHHHHHHHHH
Confidence 469999999999999999988852111 111012333444444444433211 2 67777654 44677777777
Q ss_pred HHHH
Q psy9618 244 QLQA 247 (542)
Q Consensus 244 ~L~~ 247 (542)
.+++
T Consensus 225 ~l~~ 228 (236)
T 3lv8_A 225 ALQD 228 (236)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 104
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.57 E-value=1.2e-07 Score=92.66 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=24.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
+++|+|.|++||||||+++.|++.|+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999994
No 105
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.54 E-value=7.1e-08 Score=90.56 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.+|+|+||+||||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999998864
No 106
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.49 E-value=1e-06 Score=84.37 Aligned_cols=170 Identities=14% Similarity=0.100 Sum_probs=89.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCC-------CccccHHhHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH-------PDAFDFELLLPTLQ 115 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~-------p~a~D~~lL~~~L~ 115 (542)
+.||+|+|.+||||+|+|+.|.+.+|...+.++++.+-.|. + .+.....+++. .+.+ ...+...-.
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~----~--~a~~~gl~~~~~l~~~~ykE~~-R~~m~~~g~ 83 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKE----Q--YAQEHGLNFQRLLDTSTYKEAF-RKDMIRWGE 83 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHH----H--HHHTTTCCCC-------CCSSH-HHHHHHHHH
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHH----H--HHHHcCCCchhhcchhhhHHHH-HHHHHHHHH
Confidence 57999999999999999999988887554556677665441 0 01111111211 0111 011111111
Q ss_pred HhHc-CCeeccceechhhchhcccccccCCCcEEEEEccccccC-hhhhccC-C--EEEEEECCHHHHHHHhhhcchhhh
Q psy9618 116 RLKE-GKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN-PQVLELL-D--MKVFVDTDADVRLARRLKRDILAR 190 (542)
Q Consensus 116 ~lk~-g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~-~~l~~l~-D--l~IfLdad~d~rl~Rrl~Rd~~~r 190 (542)
.+++ +.. .+.....+ ....+++|++|+=.... +.+++.+ . ..|.|.+++++|.+|...+. .
T Consensus 84 ~~R~~d~~----~~~~~~~~-------~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~---~ 149 (202)
T 3ch4_B 84 EKRQADPG----FFCRKIVE-------GISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFT---P 149 (202)
T ss_dssp HHHHHCTT----TTHHHHSB-------TCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCC---T
T ss_pred HHHhcCch----HHHHHHHH-------hcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhcc---c
Confidence 1211 111 00111110 11335899999743222 2233333 2 35899999999999953321 2
Q ss_pred cCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 191 GRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 191 gr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
+.+..+ . +.-+... ..+|++|.|++ +...+...++.+...+.+
T Consensus 150 ~~Dd~e-----s-------E~gL~~~-~~~D~vI~Ndg-t~eel~~~v~~ll~~~~~ 192 (202)
T 3ch4_B 150 GVDDAE-----S-------ECGLDNF-GDFDWVIENHG-VEQRLEEQLENLIEFIRS 192 (202)
T ss_dssp TTTTSH-----H-------HHTTTTC-CCCSEEEEECS-CHHHHHHHHHHHHHHHHT
T ss_pred cccccc-----c-------ccCCCCC-CcCCEEEEeCC-CHHHHHHHHHHHHHHHHH
Confidence 222111 0 1223344 67899999998 555566666666655553
No 107
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.49 E-value=8.5e-08 Score=93.79 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=45.9
Q ss_pred cCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHH
Q psy9618 164 LLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 164 l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~ 243 (542)
..|++|||++|.++.++|+.+|+... ..+..-..|.+.+...|..+.... ...-++|+.+. .++++.+.|.+
T Consensus 151 ~PDl~I~Ldv~~e~~~~Ri~~R~~~d---r~E~~~~ef~~rv~~~Y~~la~~~-~~~~~vIDa~~----s~eeV~~~I~~ 222 (227)
T 3v9p_A 151 QPDLTVLFDVPPQIASARRGAVRMPD---KFESESDAFFARTRAEYLRRAQEA-PHRFVIVDSSE----PIAQIRKQLEG 222 (227)
T ss_dssp CCSEEEEEECCSSCGGGTTTCCCCC------CCHHHHHHHHHHHHHHHHHHHC-TTTEEEEETTS----CHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhccCcc---chhhhhHHHHHHHHHHHHHHHHHh-cCCEEEEeCCC----CHHHHHHHHHH
Confidence 46999999999999999998885211 111112345555556665554322 22356777554 44677777777
Q ss_pred HHH
Q psy9618 244 QLQ 246 (542)
Q Consensus 244 ~L~ 246 (542)
.++
T Consensus 223 ~l~ 225 (227)
T 3v9p_A 223 VLA 225 (227)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 108
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.48 E-value=1.4e-07 Score=90.39 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=24.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.+.+|+|+||+||||||+++.|++.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356999999999999999999999875
No 109
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.46 E-value=1.4e-07 Score=92.10 Aligned_cols=28 Identities=32% Similarity=0.313 Sum_probs=25.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
.+.+|.|.|++||||||+++.|++.|+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4689999999999999999999998864
No 110
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.43 E-value=8.2e-07 Score=85.81 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=43.5
Q ss_pred cCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHH
Q psy9618 164 LLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 164 l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~ 243 (542)
..|++|||++|.++.++|+.+|+...+ .+..-..|.+.+...|..+.... ...-++|+.+. .++++.+.|.+
T Consensus 131 ~PDlvi~Ld~~~e~~~~Ri~~R~~~dr---~E~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~----s~eeV~~~I~~ 202 (213)
T 4edh_A 131 RPDLTLVFDLPVEIGLARAAARGRLDR---FEQEDRRFFEAVRQTYLQRAAQA-PERYQVLDAGL----PLAEVQAGLDR 202 (213)
T ss_dssp CCSEEEEEECCHHHHHHHHCCCSSCCT---TTTSCHHHHHHHHHHHHHHHHHC-TTTEEEEETTS----CHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCcCc---ccccHHHHHHHHHHHHHHHHHHC-CCcEEEEeCCC----CHHHHHHHHHH
Confidence 459999999999999999988852111 01001123333333444332221 22457777654 34666777776
Q ss_pred HHHH
Q psy9618 244 QLQA 247 (542)
Q Consensus 244 ~L~~ 247 (542)
.+.+
T Consensus 203 ~l~~ 206 (213)
T 4edh_A 203 LLPN 206 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 111
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.43 E-value=3.9e-07 Score=96.75 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=32.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
+..+.+|.|+|++||||||+|+.|++.+++.+ |+.|.+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~---i~~D~~ 292 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVH---VNRDTL 292 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEE---CCGGGS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEE---EccchH
Confidence 34578999999999999999999999998654 488876
No 112
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.40 E-value=6.5e-07 Score=87.60 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=32.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
+|.+|+|.|++||||||+++.|++.+|...+ +.|++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~ 63 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLR 63 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHH
Confidence 3679999999999999999999999998765 6676654
No 113
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.38 E-value=4.3e-07 Score=87.88 Aligned_cols=75 Identities=16% Similarity=0.289 Sum_probs=44.8
Q ss_pred cCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHH
Q psy9618 164 LLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 164 l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~ 243 (542)
..|++|||++|.++.++|+.+|+...+ .+..-..|.+.+...|..+.... ..-++|+.+. .++++.+.|.+
T Consensus 132 ~PDl~i~Ldv~~e~~~~Ri~~R~~~dr---~E~~~~~f~~rv~~~y~~la~~~--~~~~vIDa~~----s~eeV~~~I~~ 202 (213)
T 4tmk_A 132 RPDLTLYLDVTPEVGLKRARARGELDR---IEQESFDFFNRTRARYLELAAQD--KSIHTIDATQ----PLEAVMDAIRT 202 (213)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHSSCCT---TTTSCHHHHHHHHHHHHHHHHTC--TTEEEEETTS----CHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCccc---hhhhHHHHHHHHHHHHHHHHHHC--CcEEEECCCC----CHHHHHHHHHH
Confidence 459999999999999999988853111 11111224444555555444321 2346666544 34677777777
Q ss_pred HHHH
Q psy9618 244 QLQA 247 (542)
Q Consensus 244 ~L~~ 247 (542)
.+++
T Consensus 203 ~l~~ 206 (213)
T 4tmk_A 203 TVTH 206 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 114
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.37 E-value=7.4e-07 Score=87.90 Aligned_cols=41 Identities=27% Similarity=0.342 Sum_probs=34.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
..+.+|.|+|++||||||+|+.|++.++..+ .+++.|.+.+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~-~~~~~D~~r~ 70 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNI-VIIDGDSFRS 70 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCC-EEECGGGGGT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCc-EEEecHHHHH
Confidence 3578999999999999999999999998543 3568888754
No 115
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.35 E-value=7.6e-06 Score=80.84 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=25.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.++++|+|.|++||||||+++.|++.|+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4578999999999999999999999993
No 116
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.35 E-value=6.5e-07 Score=84.82 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 45 VIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.|.|+|||||||||+++.|.+.+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 477999999999999999998874
No 117
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.35 E-value=1.9e-07 Score=92.08 Aligned_cols=29 Identities=28% Similarity=0.203 Sum_probs=26.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPW 71 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~ 71 (542)
|++|||+|++||||||+|+.|.+++|++.
T Consensus 1 m~~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 1 MKLIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 47999999999999999999999899663
No 118
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.35 E-value=5.9e-09 Score=99.24 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=24.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
++|+|.|++||||||+++.|++.|+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 379999999999999999999999643
No 119
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.33 E-value=2.2e-07 Score=88.66 Aligned_cols=71 Identities=11% Similarity=0.262 Sum_probs=41.0
Q ss_pred CCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHH
Q psy9618 165 LDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQ 244 (542)
Q Consensus 165 ~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~ 244 (542)
-|+++|+++|+++.++|+..|+..+ +. .|.+.+...|......... --++|+.+. .++++.+.|.+.
T Consensus 122 PDl~i~Ld~~~e~~~~R~~~~dr~e---~~-----ef~~rv~~~y~~la~~~~~-~~~~IDa~~----~~eeV~~~I~~~ 188 (197)
T 3hjn_A 122 PDLTFYIDVDVETALKRKGELNRFE---KR-----EFLERVREGYLVLAREHPE-RIVVLDGKR----SIEEIHRDVVRE 188 (197)
T ss_dssp CSEEEEEECCHHHHHHHC---CTTC---CH-----HHHHHHHHHHHHHHHHCTT-TEEEEETTS----CHHHHHHHHHHH
T ss_pred CCceeecCcChHHHHHhCcCcCccc---cH-----HHHHHHHHHHHHHHHhCCC-CEEEEcCCC----CHHHHHHHHHHH
Confidence 4999999999999999987765422 11 2444444444443322111 124555443 457788888887
Q ss_pred HHHh
Q psy9618 245 LQAV 248 (542)
Q Consensus 245 L~~k 248 (542)
+++|
T Consensus 189 i~~r 192 (197)
T 3hjn_A 189 VKRR 192 (197)
T ss_dssp HSCC
T ss_pred HHHH
Confidence 7754
No 120
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.30 E-value=2.3e-06 Score=79.70 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=32.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
...+|+|+|++||||||+++.|+..++...+ .++.|++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i-~i~~d~~~~ 47 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKV-HFHSDDLWG 47 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEE-EECTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeE-EEcccchhh
Confidence 3579999999999999999999998765543 568887753
No 121
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.30 E-value=1.1e-06 Score=88.78 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=33.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhch
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV 83 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~ 83 (542)
..+.+|.|+|+|||||||+++.|+++++.. ...||+|.|...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~-~~~Is~D~~R~~ 72 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGN-VIVIDNDTFKQQ 72 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTC-CEEECTHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC-eEEEechHhHHh
Confidence 347899999999999999999999998422 335699988643
No 122
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.29 E-value=1.7e-06 Score=83.09 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=41.9
Q ss_pred CCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHH
Q psy9618 165 LDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQ 244 (542)
Q Consensus 165 ~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~ 244 (542)
-|++|||++|+++.++|+.+|+... ++ .+..-..|.+.+...|..+...... .-++|+.+. .++.+.+.|++.
T Consensus 125 PDl~i~Ld~~~e~~~~Ri~~r~~~~-dr-~e~~~~~f~~~v~~~Y~~l~~~~~~-~~~~IDa~~----~~e~V~~~i~~~ 197 (205)
T 4hlc_A 125 PDLTIYLNVSAEVGRERIIKNSRDQ-NR-LDQEDLKFHEKVIEGYQEIIHNESQ-RFKSVNADQ----PLENVVEDTYQT 197 (205)
T ss_dssp CSEEEEEECCHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHSCCT-TEEEEETTS----CHHHHHHHHHHH
T ss_pred CCEEeeeCCCHHHHHHHHHhcCCcc-cc-hhccCHHHHHHHHHHHHHHHHhCCC-CEEEEECCC----CHHHHHHHHHHH
Confidence 4999999999999999998875321 11 1111224555566666665433211 134555443 345666666666
Q ss_pred HHH
Q psy9618 245 LQA 247 (542)
Q Consensus 245 L~~ 247 (542)
+.+
T Consensus 198 i~~ 200 (205)
T 4hlc_A 198 IIK 200 (205)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 123
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.25 E-value=2.8e-06 Score=79.29 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=29.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 82 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~ 82 (542)
.+|+|+|++||||||+++.|++.++ +.+.++.|++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~--g~~~i~~d~~~~ 39 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD--NSAYIEGDIINH 39 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS--SEEEEEHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC--CeEEEcccchhh
Confidence 5899999999999999999998764 233557787764
No 124
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.21 E-value=1.7e-06 Score=83.93 Aligned_cols=186 Identities=19% Similarity=0.176 Sum_probs=87.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcH-HHHHHHhccccCCC-CCccc------cHHhHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNE-EQHKKAAQNEYNFD-HPDAF------DFELLLPT 113 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~-e~~~~~~~~~~~fd-~p~a~------D~~lL~~~ 113 (542)
+..+|.+.|++||||||+++.|++.|+.+.. ++.--. . -++ .+..+.......+. ++.+. +...+.+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~-~~~ep~-~--~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~ 79 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK-LLKFPE-R--STRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDK 79 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEE-EEESSC-T--TSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccce-EEEecC-C--CChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999986422 221100 0 011 11111111111000 11110 11111222
Q ss_pred H-HHhHcCCeeccceechhhchhcccccccCCCcEEEEEccccccChhhhccCCEEEEE-ECCHHHHHHHhhhcchhhhc
Q psy9618 114 L-QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFV-DTDADVRLARRLKRDILARG 191 (542)
Q Consensus 114 L-~~lk~g~~v~~P~yd~~~~~~~~~~~~~~~~~vVIvEGi~~~~~~~l~~l~Dl~IfL-dad~d~rl~Rrl~Rd~~~rg 191 (542)
+ ..+.+|+-|....|-.+.-..+.. ..+.+.. ++.+..+. .-...-|++||| ++|+++.++|+.+|.. |
T Consensus 80 I~paL~~g~~VI~DRy~~S~~ayq~~-~~l~~~~---~~~l~~~~--~~~~~PDlti~L~dv~pe~~~~R~~~~~d--r- 150 (216)
T 3tmk_A 80 IKKDLLEGKNIVMDRYVYSGVAYSAA-KGTNGMD---LDWCLQPD--VGLLKPDLTLFLSTQDVDNNAEKSGFGDE--R- 150 (216)
T ss_dssp HHHHHHTTCEEEEESCHHHHHHHHHT-TCCTTCC---HHHHHGGG--TTSBCCSEEEEEECSCCSCGGGCCSSSCC--T-
T ss_pred HHHHHHcCCEEEEeccHhHHHHHHHh-cCCCHHH---HHHHHHHh--hCCCCCCEEEEEeCCCHHHHHHHhccCcc--c-
Confidence 2 334556555444443332221110 0011111 01111110 011235999999 9999999888654321 1
Q ss_pred CCHHHHHHHHHhhccchhhccccC---CCCcccEEEECCCCCHHHHHHHHHHHHHHHHH
Q psy9618 192 RDLEGVIKQYVNMVKPAFSTFIAP---SMVHADIIVPRGGENCVAIDLIVQHIHSQLQA 247 (542)
Q Consensus 192 r~~~~vl~q~~~~v~p~y~~~i~p---~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~~ 247 (542)
.+. ..|.+.+...|..+... .....-++|+.+.. .++++.+.|++.+++
T Consensus 151 --~E~--~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~---s~eeV~~~I~~~i~~ 202 (216)
T 3tmk_A 151 --YET--VKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNK---GIQEVEALIWQIVEP 202 (216)
T ss_dssp --TCC--HHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTC---CHHHHHHHHHHHHHH
T ss_pred --ccH--HHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCC---CHHHHHHHHHHHHHH
Confidence 111 35666666666666543 12233466662322 346777777776665
No 125
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.18 E-value=2.9e-06 Score=79.09 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.+|+|+|||||||||+++.|++.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999864
No 126
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.17 E-value=3.1e-06 Score=81.82 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=16.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH-HHc
Q psy9618 43 PFVIGICGGSASGKTTVATKII-ESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La-~~L 67 (542)
..+|+|+|++||||||+++.|+ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4599999999999999999999 765
No 127
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.17 E-value=5.3e-06 Score=91.09 Aligned_cols=40 Identities=33% Similarity=0.329 Sum_probs=32.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCC---eEEeecchhhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVP---WVTLLSMDSFY 81 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p---~v~iIs~Ddfy 81 (542)
+..+|+|+|++||||||+++.|++.++.. .+..++.|++.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 46899999999999999999999999632 14456777764
No 128
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.14 E-value=1.5e-06 Score=89.68 Aligned_cols=40 Identities=15% Similarity=0.426 Sum_probs=33.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh--hchh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--YRVL 84 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf--y~~l 84 (542)
++.+|.|+||+||||||++..||++|+.+ +||+|++ |+.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~e---iIs~Ds~qvYr~m 80 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLE---VINSDKMQVYKGL 80 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEE---EEECCSSTTBSSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCc---EEcccccccccce
Confidence 35699999999999999999999999844 5699976 5543
No 129
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.11 E-value=2e-07 Score=94.34 Aligned_cols=81 Identities=7% Similarity=-0.016 Sum_probs=62.0
Q ss_pred hhhhccccccccccc-----cccccccccc----cc-cCceEEEEeccccc---cChHHHhhhcccccccccccCCCCch
Q psy9618 302 YIRRMWSVDVPIYNF-----VTHSRETRTK----PM-YGANVIIFEGILAF---HNPQVLERGFKLRPTLAQSYAGQPLP 368 (542)
Q Consensus 302 ~~~~g~~v~~P~y~f-----~~~~r~~~~~----~~-~~~~vii~EGi~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (542)
.+..|+.++.|.|+| ..|.+..+.. .+ .+.+++|+||++++ +...++.+
T Consensus 86 ~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~------------------ 147 (290)
T 1a7j_A 86 EYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGL------------------ 147 (290)
T ss_dssp HHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGG------------------
T ss_pred HHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHh------------------
Confidence 456788899999965 5566644432 35 46889999999998 33344443
Q ss_pred hhhccCCCCCCceeecccCCcchhhhhhhcccccCcchhcc
Q psy9618 369 EALALLPETPQIKGLHTAGNRTRVSRVLLRGFKLRPTLAQS 409 (542)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~ 409 (542)
.|++|||+++.++|+.||+.||+..||++.+.
T Consensus 148 ---------~D~~IfV~a~~~~rl~Rrl~Rd~~~RG~s~e~ 179 (290)
T 1a7j_A 148 ---------ADLKIGVVPVINLEWIQKIHRDRATRGYTTEA 179 (290)
T ss_dssp ---------CSEEEEEEECHHHHHHHHHHHTSSSCCSCCCC
T ss_pred ---------CCEEEEEECCHHHHHHHHhhhhhhhcCCChHH
Confidence 48999999999999999999999999976554
No 130
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.06 E-value=6.6e-06 Score=89.82 Aligned_cols=42 Identities=31% Similarity=0.399 Sum_probs=34.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeE--Eeecchhhhc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWV--TLLSMDSFYR 82 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v--~iIs~Ddfy~ 82 (542)
..+.+|.++|.+||||||+|+.|++.|++.++ .+++.|++.+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence 34689999999999999999999999975543 4578888653
No 131
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.92 E-value=2.4e-06 Score=86.36 Aligned_cols=96 Identities=19% Similarity=0.145 Sum_probs=59.8
Q ss_pred cccccccccccc----ccccc--ccccccCceEEEEeccccccChHHHhhhcccccccccccCC------CCchhhhc-c
Q psy9618 307 WSVDVPIYNFVT----HSRET--RTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAG------QPLPEALA-L 373 (542)
Q Consensus 307 ~~v~~P~y~f~~----~~r~~--~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~ 373 (542)
+++.+|.|+|.+ +.|.+ +...+ +.+|+|+||++++.++.+.... +. ..|.+ +.+..|-+ +
T Consensus 124 ~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~---~~---~~~~~~l~~~n~~l~~y~~~l 196 (290)
T 1odf_A 124 DTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIE---NN---DLLTGDMVDVNAKLFFYSDLL 196 (290)
T ss_dssp CEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTT---TC---SSSCTTHHHHHHHHHHHHHHT
T ss_pred cceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhh---hc---ccchhhHHHHHHHHHHHHHHH
Confidence 789999999999 88854 35677 8999999999887766542110 00 00000 00111211 1
Q ss_pred --CCCCCCceeecccCCcchhhh-hhhc--c-cccC--cchhcc
Q psy9618 374 --LPETPQIKGLHTAGNRTRVSR-VLLR--G-FKLR--PTLAQS 409 (542)
Q Consensus 374 --~~~~~~~~~~~~~~~~~rl~r-r~~R--d-~~~r--~~~~~~ 409 (542)
..+..|++||++++...++.| |+.| | ..+| |++.+.
T Consensus 197 ~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~ 240 (290)
T 1odf_A 197 WRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQ 240 (290)
T ss_dssp TTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHH
T ss_pred HhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHH
Confidence 123344559999988888887 9998 7 3446 655443
No 132
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.76 E-value=7.4e-05 Score=80.28 Aligned_cols=32 Identities=34% Similarity=0.348 Sum_probs=27.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
..+.+|.++|.+||||||+++.|++.++..++
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~ 68 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGV 68 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 35689999999999999999999999875543
No 133
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.76 E-value=5.7e-06 Score=84.09 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=60.4
Q ss_pred hhhhccc-cccccccccccccccc-cccccCceEEEEeccccccCh----------HHHhhhcccccccccccCCCCchh
Q psy9618 302 YIRRMWS-VDVPIYNFVTHSRETR-TKPMYGANVIIFEGILAFHNP----------QVLERGFKLRPTLAQSYAGQPLPE 369 (542)
Q Consensus 302 ~~~~g~~-v~~P~y~f~~~~r~~~-~~~~~~~~vii~EGi~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 369 (542)
.+..|+. +..|.||+..|.|... ...+.+.+|+|+||+++|++. .+++
T Consensus 154 ~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~-------------------- 213 (308)
T 1sq5_A 154 DLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSD-------------------- 213 (308)
T ss_dssp HHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGG--------------------
T ss_pred HHhCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHH--------------------
Confidence 3455666 9999999999988643 445577899999999999973 2333
Q ss_pred hhccCCCCCCceeecccCCcchhhhhhhcccccCcc
Q psy9618 370 ALALLPETPQIKGLHTAGNRTRVSRVLLRGFKLRPT 405 (542)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~rl~rr~~Rd~~~r~~ 405 (542)
..|+++||+++.++++.|++.||...|+.
T Consensus 214 -------~~D~~i~V~~~~~~~~~R~~~R~~~~r~~ 242 (308)
T 1sq5_A 214 -------FVDFSIYVDAPEDLLQTWYINRFLKFREG 242 (308)
T ss_dssp -------GCSEEEEEECCHHHHHHHHHHHHHHHHHT
T ss_pred -------hCCEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 25899999999999999999999776653
No 134
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=97.70 E-value=1e-06 Score=85.38 Aligned_cols=54 Identities=28% Similarity=0.241 Sum_probs=40.5
Q ss_pred hhhhhhhhhhHHHHHHH--HhhhhhhhhhhhHhhhhhHHHHHHHHHhhCCCcchhhh
Q psy9618 250 LMDATVATGAAAMMAIR--ILLDHDVLLMDATVATGAAAMMAIRILLDHDVPEGYIR 304 (542)
Q Consensus 250 ~~~~~~~t~~~~~~~~~--~~~~~~~~l~d~~~a~g~~~~~~~~~~~~~~~~~~~~~ 304 (542)
++++++.| .+..+|.+ .+.++.|+|+|||+|||+|+++|++.|+++|+|++++.
T Consensus 108 ~~~Rd~~t-~p~~~~~~lP~i~~~~VilvD~~laTG~T~~~ai~~L~~~G~pe~~I~ 163 (217)
T 3dmp_A 108 GVYRADDH-RPVEYLVRLPDLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLM 163 (217)
T ss_dssp ECSCCCSS-SCCCSEEECCCCTTCEEEEECSEESSSHHHHHHHHHHHTTTCCGGGEE
T ss_pred EEEECCCC-CcEEEeecCCCCCCCEEEEEcCcccccHHHHHHHHHHHHcCCCcCeEE
Confidence 33444444 34444444 34567899999999999999999999999999887754
No 135
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.63 E-value=1.5e-06 Score=82.97 Aligned_cols=83 Identities=11% Similarity=0.007 Sum_probs=63.4
Q ss_pred hhhhccccccccccccccccccccccccCc-eEEEEeccccccChHH-HhhhcccccccccccCCCCchhhhccCCCCCC
Q psy9618 302 YIRRMWSVDVPIYNFVTHSRETRTKPMYGA-NVIIFEGILAFHNPQV-LERGFKLRPTLAQSYAGQPLPEALALLPETPQ 379 (542)
Q Consensus 302 ~~~~g~~v~~P~y~f~~~~r~~~~~~~~~~-~vii~EGi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (542)
.|..|+.+..|.||+.++.+..+...+.++ .++|+||.+.+.|... .. +....|
T Consensus 94 ~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~------------------------l~~~~d 149 (208)
T 3c8u_A 94 ALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRD------------------------LTAIWD 149 (208)
T ss_dssp HHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGG------------------------GGGTCS
T ss_pred HHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHH------------------------HHHhcC
Confidence 456678899999999999887777788887 9999999998765321 11 112248
Q ss_pred ceeecccCCcchhhhhhhcccccCcchhcc
Q psy9618 380 IKGLHTAGNRTRVSRVLLRGFKLRPTLAQS 409 (542)
Q Consensus 380 ~~~~~~~~~~~rl~rr~~Rd~~~r~~~~~~ 409 (542)
.++|++++.++++.|++.|+ .+||++.+.
T Consensus 150 ~~i~vd~~~~~~~~R~~~R~-~~~g~t~~~ 178 (208)
T 3c8u_A 150 VSIRLEVPMADLEARLVQRW-LDHGLNHDA 178 (208)
T ss_dssp EEEEECCCHHHHHHHHHHHH-HHTTCCHHH
T ss_pred EEEEEeCCHHHHHHHHHHHH-HhcCCCHHH
Confidence 99999999999999888886 467765443
No 136
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.59 E-value=1.9e-05 Score=77.56 Aligned_cols=78 Identities=38% Similarity=0.563 Sum_probs=64.4
Q ss_pred hhhccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCcee
Q psy9618 303 IRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQIKG 382 (542)
Q Consensus 303 ~~~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (542)
|..|+.+.+|.|||.+|.+..+...+.+.+++|+||.+.++++.+++.. ++.+
T Consensus 103 l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~~~~~~---------------------------d~vi 155 (252)
T 1uj2_A 103 ITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLF---------------------------QMKL 155 (252)
T ss_dssp HHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHHC---------------------------SEEE
T ss_pred HHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHHHHHhc---------------------------CeeE
Confidence 4467789999999999988755555667889999999998877777653 7899
Q ss_pred ecccCCcchhhhhhhcccccCcchh
Q psy9618 383 LHTAGNRTRVSRVLLRGFKLRPTLA 407 (542)
Q Consensus 383 ~~~~~~~~rl~rr~~Rd~~~r~~~~ 407 (542)
|++++.++++.|++.||...||...
T Consensus 156 ~l~~~~e~~~~R~~~R~~~~rg~~~ 180 (252)
T 1uj2_A 156 FVDTDADTRLSRRVLRDISERGRDL 180 (252)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCH
T ss_pred EEeCCHHHHHHHHHHHHHhhhCCCH
Confidence 9999999999999999877777543
No 137
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.58 E-value=0.0005 Score=65.49 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=23.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
..+|+|+|||||||||+++.|.+.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999999875
No 138
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=97.56 E-value=2.6e-05 Score=80.30 Aligned_cols=30 Identities=20% Similarity=0.099 Sum_probs=26.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
.+.+.|.|.|+.||||||+++.|++.|+..
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASGG 34 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 345899999999999999999999999653
No 139
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.55 E-value=0.00073 Score=63.79 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
..+|+|+|||||||||+.+.|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999988763
No 140
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=97.50 E-value=2.2e-06 Score=84.40 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=44.0
Q ss_pred HhhhhhhhhhhHHHHHHH---HhhhhhhhhhhhHhhhhhHHHHHHHHHhhCCCcchhhh
Q psy9618 249 LLMDATVATGAAAMMAIR---ILLDHDVLLMDATVATGAAAMMAIRILLDHDVPEGYIR 304 (542)
Q Consensus 249 ~~~~~~~~t~~~~~~~~~---~~~~~~~~l~d~~~a~g~~~~~~~~~~~~~~~~~~~~~ 304 (542)
+++++++.|+.+..+|.+ .+.++.|+|+|||+|||+|+++|++.|+++|+++++++
T Consensus 132 I~~~Rd~~t~~~~~~~~~lp~di~~r~VilvDdmlaTG~T~~~ai~~L~~~G~~p~~I~ 190 (243)
T 1bd3_D 132 ILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERII 190 (243)
T ss_dssp EEEEECSSSCCEEEEEEECCTTGGGSEEEEECSEESSCHHHHHHHHHHHHHTCCGGGEE
T ss_pred EEEEEcCCCCCeEEEeccCCcccCCCEEEEECCccccHHHHHHHHHHHHHcCCCcceEE
Confidence 344555556666665655 56778899999999999999999999999999776654
No 141
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.48 E-value=4.9e-05 Score=77.55 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=33.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh--hchh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--YRVL 84 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf--y~~l 84 (542)
+.+|+|+||+||||||+|..|++.++. .+|++|++ |+.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~---~iis~Ds~QvYr~~ 43 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNG---EVISGDSMQVYRGM 43 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTE---EEEECCGGGGBTTC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCcc---ceeecCcccceeee
Confidence 568999999999999999999999974 46799987 8754
No 142
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.48 E-value=0.001 Score=64.19 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=24.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
+....+++|.|||||||||+.+.|+..+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34456999999999999999999998875
No 143
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.46 E-value=0.00074 Score=64.77 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=22.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..+++|.|++||||||+.+.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999999877
No 144
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.37 E-value=9.2e-05 Score=75.87 Aligned_cols=35 Identities=37% Similarity=0.512 Sum_probs=30.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
+.+|+|+|++||||||+|+.|+++++.+ +|++|++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~---iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCE---LISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEE---EEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCc---EEeccch
Confidence 3689999999999999999999999844 5589987
No 145
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.36 E-value=0.0001 Score=75.04 Aligned_cols=40 Identities=40% Similarity=0.522 Sum_probs=33.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh--hchh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--YRVL 84 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf--y~~l 84 (542)
.+.+|+|+||+||||||+|..|+++++. .+|++|++ |+.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~---~iis~Ds~qvY~~~ 50 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPV---ELISVDSALIYKGM 50 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCE---EEEECCTTTTBTTC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCC---cEEecccccccccc
Confidence 3679999999999999999999999974 35689974 7644
No 146
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.29 E-value=0.00011 Score=77.48 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=34.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh--hhchhc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVLN 85 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Dd--fy~~l~ 85 (542)
+.+|+|+||+||||||+|..|++.++. .+|++|+ +|+.++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~---~iis~Ds~QvYr~l~ 43 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNG---EVINSDSMQVYKDIP 43 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTE---EEEECCTTTTBSSCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCC---eEeecCccceecccc
Confidence 368999999999999999999999984 3679998 688553
No 147
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.18 E-value=2.1e-05 Score=74.55 Aligned_cols=78 Identities=28% Similarity=0.393 Sum_probs=66.2
Q ss_pred hhhccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCcee
Q psy9618 303 IRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQIKG 382 (542)
Q Consensus 303 ~~~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (542)
+..++.+..|.|++..+.|..+...+..+.++|+||.+.|.|+.+..+. |.++
T Consensus 77 ~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~---------------------------d~~i 129 (211)
T 3asz_A 77 LLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLM---------------------------DLKV 129 (211)
T ss_dssp HHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTC---------------------------SEEE
T ss_pred HHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhc---------------------------CEEE
Confidence 3456678889999999988666566778899999999999988887753 8999
Q ss_pred ecccCCcchhhhhhhcccccCcchh
Q psy9618 383 LHTAGNRTRVSRVLLRGFKLRPTLA 407 (542)
Q Consensus 383 ~~~~~~~~rl~rr~~Rd~~~r~~~~ 407 (542)
|++++.+.++.|++.|+...||.+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~ 154 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSL 154 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999988888643
No 148
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1
Probab=97.08 E-value=2.4e-05 Score=75.33 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=29.7
Q ss_pred HhhhhhhhhhhhHhhhhhHHHHHHHHHhhCCC
Q psy9618 267 ILLDHDVLLMDATVATGAAAMMAIRILLDHDV 298 (542)
Q Consensus 267 ~~~~~~~~l~d~~~a~g~~~~~~~~~~~~~~~ 298 (542)
.++++.|+|+|||+|||+|+++|++.|+++|+
T Consensus 120 di~~r~vilvDd~laTG~T~~~ai~~L~~~G~ 151 (208)
T 1v9s_A 120 DIAERRAFLLDPMLATGGSASLALSLLKERGA 151 (208)
T ss_dssp CGGGSCEEEECSEESSSHHHHHHHHHHHHTTC
T ss_pred ccCCCEEEEECCccccHHHHHHHHHHHHHcCC
Confidence 56678899999999999999999999999996
No 149
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.04 E-value=4.7e-05 Score=74.37 Aligned_cols=78 Identities=33% Similarity=0.510 Sum_probs=60.5
Q ss_pred hhccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCceee
Q psy9618 304 RRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQIKGL 383 (542)
Q Consensus 304 ~~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (542)
..+....+|.|++..+.|......+.+.+++|+||+..+.+..+.++ .+.++|
T Consensus 107 ~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l~~~---------------------------~~~~i~ 159 (245)
T 2jeo_A 107 VEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDM---------------------------FHLRLF 159 (245)
T ss_dssp HTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHHHTT---------------------------CSEEEE
T ss_pred HCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHHHHHh---------------------------cCeEEE
Confidence 34566788999999998865444456778999999999888777664 378999
Q ss_pred cccCCcchhhhhhhcccccCcchhcc
Q psy9618 384 HTAGNRTRVSRVLLRGFKLRPTLAQS 409 (542)
Q Consensus 384 ~~~~~~~rl~rr~~Rd~~~r~~~~~~ 409 (542)
++++.++++.|++.||+ .+|++.+.
T Consensus 160 v~th~~~~~~r~~~r~~-~~G~~~e~ 184 (245)
T 2jeo_A 160 VDTDSDVRLSRRVLRDV-RRGRDLEQ 184 (245)
T ss_dssp EECCHHHHHHHHHHHHT-C---CHHH
T ss_pred EECCHHHHHHHHHHHHH-HcCCCHHH
Confidence 99999999999999998 78875543
No 150
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=97.02 E-value=1.1e-05 Score=78.06 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=33.1
Q ss_pred hHHHHHHH--Hhhhh--hhhhhhhHhhhhhHHHHHHHHHhhCCCc
Q psy9618 259 AAAMMAIR--ILLDH--DVLLMDATVATGAAAMMAIRILLDHDVP 299 (542)
Q Consensus 259 ~~~~~~~~--~~~~~--~~~l~d~~~a~g~~~~~~~~~~~~~~~~ 299 (542)
.+..+|.+ .+.++ .|+|+|||+|||+|+++||+.|++ |+|
T Consensus 118 ~p~~~y~klP~i~~~~~~VilvDp~laTG~T~~~ai~~L~~-G~p 161 (216)
T 1xtt_A 118 DVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVK-ANP 161 (216)
T ss_dssp CEEEEEEECCCCCTTTCEEEEECSEESSSHHHHHHHHHHGG-GCC
T ss_pred CceEeeccCCCccCCcceEEEEcCCccchHHHHHHHHHHHh-CCC
Confidence 45555655 45567 799999999999999999999999 876
No 151
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.96 E-value=0.00047 Score=74.87 Aligned_cols=38 Identities=5% Similarity=0.218 Sum_probs=32.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEeecchh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV----PWVTLLSMDS 79 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~----p~v~iIs~Dd 79 (542)
..++|.++|.|||||||+|++|+++|+. ..+.+++.|+
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5689999999999999999999999985 2345667776
No 152
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=96.96 E-value=0.0011 Score=68.34 Aligned_cols=29 Identities=28% Similarity=0.193 Sum_probs=25.9
Q ss_pred CCEEEEEEcCCCCcHHHHH-HHHHHHcCCC
Q psy9618 42 EPFVIGICGGSASGKTTVA-TKIIESLNVP 70 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvA-k~La~~Lg~p 70 (542)
+.+.|.|.|+.||||||++ +.|++.|+..
T Consensus 11 ~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~ 40 (341)
T 1osn_A 11 GVLRIYLDGAYGIGKTTAAEEFLHHFAITP 40 (341)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence 4579999999999999999 9999998744
No 153
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.92 E-value=0.00033 Score=66.14 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=43.6
Q ss_pred hhhhccccccccccccccccccccccccCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCce
Q psy9618 302 YIRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQIK 381 (542)
Q Consensus 302 ~~~~g~~v~~P~y~f~~~~r~~~~~~~~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (542)
.+.+|+.+.+|.|+|.++.+......+.+++++||||.+.+.. .+..+ .|+.
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~-~~~~~---------------------------~d~~ 147 (201)
T 1rz3_A 96 QLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRK-EWRPF---------------------------FDFV 147 (201)
T ss_dssp GTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTST-TTGGG---------------------------CSEE
T ss_pred HHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccH-HHHhh---------------------------cCEE
Confidence 4567889999999999765543344557889999999998753 23332 4799
Q ss_pred eecccCCcchhhhhhhcc
Q psy9618 382 GLHTAGNRTRVSRVLLRG 399 (542)
Q Consensus 382 ~~~~~~~~~rl~rr~~Rd 399 (542)
+||+++.++++.|++.||
T Consensus 148 i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 148 VYLDCPREIRFARENDQV 165 (201)
T ss_dssp EEECCC------------
T ss_pred EEEeCCHHHHHHHHhcCC
Confidence 999999999999999998
No 154
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.91 E-value=0.0025 Score=65.57 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=28.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTL 74 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~i 74 (542)
+.-|.+.|++|+|||++|++|++.++.+++.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 34678899999999999999999999987744
No 155
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=96.88 E-value=2.7e-05 Score=74.97 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHH---HhhhhhhhhhhhHhhhhhHHHHHHHHHhhCCC
Q psy9618 255 VATGAAAMMAIR---ILLDHDVLLMDATVATGAAAMMAIRILLDHDV 298 (542)
Q Consensus 255 ~~t~~~~~~~~~---~~~~~~~~l~d~~~a~g~~~~~~~~~~~~~~~ 298 (542)
+.|+.+..+|.+ .++++.|+|+|||+|||+|+++|++.|.++|+
T Consensus 105 ~~t~~~~~~~~~lp~di~~r~VilvDd~laTG~T~~~ai~~L~~~G~ 151 (208)
T 2ehj_A 105 EETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGC 151 (208)
T ss_dssp TTTCCEEEEEEECCSCGGGCEEEEEEEEESSCHHHHHHHHHHHHTTC
T ss_pred CCCCceEEEecCCCCccCCCEEEEECCccccHHHHHHHHHHHHHcCC
Confidence 334444444444 56678899999999999999999999999996
No 156
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=96.69 E-value=4.3e-05 Score=74.18 Aligned_cols=32 Identities=34% Similarity=0.562 Sum_probs=29.5
Q ss_pred HhhhhhhhhhhhHhhhhhHHHHHHHHHhhCCC
Q psy9618 267 ILLDHDVLLMDATVATGAAAMMAIRILLDHDV 298 (542)
Q Consensus 267 ~~~~~~~~l~d~~~a~g~~~~~~~~~~~~~~~ 298 (542)
.++++.|+|+|||+|||+|+++|++.|+++|+
T Consensus 133 di~gr~VilvDd~laTG~Tl~~ai~~L~~~G~ 164 (221)
T 1o5o_A 133 LNDDKEVFLLDPMLATGVSSIKAIEILKENGA 164 (221)
T ss_dssp CCTTCEEEEECSEESSSHHHHHHHHHHHHTTC
T ss_pred ccCCCEEEEECCccccHHHHHHHHHHHHHcCC
Confidence 45678899999999999999999999999986
No 157
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.68 E-value=0.0009 Score=62.17 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=23.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.+.+|+|+|++||||||++..|++.|
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999999987
No 158
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=96.66 E-value=0.00045 Score=70.00 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEee
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLL 75 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iI 75 (542)
+.+.+|.+-|.-||||||..+.|.+.|+-.++.++
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~ 118 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVV 118 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEE
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEE
Confidence 34799999999999999999999999986665443
No 159
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.00094 Score=70.33 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
=|.+.||+|+|||++|+++|.++|.+++.+ +..++
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~~f~~v-~~s~l 218 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDCKFIRV-SGAEL 218 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTCEEEEE-EGGGG
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCCCceEE-EhHHh
Confidence 377999999999999999999999987744 44333
No 160
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.54 E-value=0.00045 Score=70.35 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=57.0
Q ss_pred hccc-cccccccccccccccc-cccccCceEEEEeccccccC---hHHHhhhcccccccccccCCCCchhhhccCCCCCC
Q psy9618 305 RMWS-VDVPIYNFVTHSRETR-TKPMYGANVIIFEGILAFHN---PQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQ 379 (542)
Q Consensus 305 ~g~~-v~~P~y~f~~~~r~~~-~~~~~~~~vii~EGi~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (542)
.|.. +.+|.||+-.+.|..- ...+.+.+|||+||++++.+ ..++++ .|
T Consensus 167 ~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~---------------------------~D 219 (312)
T 3aez_A 167 SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDL---------------------------FD 219 (312)
T ss_dssp TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGG---------------------------CS
T ss_pred CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHh---------------------------cC
Confidence 3444 7889999999998543 34457789999999999975 334433 58
Q ss_pred ceeecccCCcchhhhhhhcccccCc
Q psy9618 380 IKGLHTAGNRTRVSRVLLRGFKLRP 404 (542)
Q Consensus 380 ~~~~~~~~~~~rl~rr~~Rd~~~r~ 404 (542)
+++||+++.++++.|++.|++..|+
T Consensus 220 ~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 220 FSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988776554
No 161
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.53 E-value=0.0077 Score=64.15 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=32.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFY 81 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddfy 81 (542)
.|.+|+++|++||||||++..|+..|.. ..+.++++|.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 5899999999999999999999988832 235577888764
No 162
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.53 E-value=0.0019 Score=64.80 Aligned_cols=39 Identities=21% Similarity=0.475 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
+.|..+.+.||+|+|||++|++|++.+|.+++. +++.++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~-v~~~~l 72 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIM-MSAGEL 72 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEE-EEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEE-EeHHHh
Confidence 346788999999999999999999999998773 455444
No 163
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}
Probab=96.49 E-value=6.3e-05 Score=72.34 Aligned_cols=43 Identities=28% Similarity=0.348 Sum_probs=33.6
Q ss_pred hhhhHHHHHHH--HhhhhhhhhhhhHhhhhhHHHHHHHHHhhCCC
Q psy9618 256 ATGAAAMMAIR--ILLDHDVLLMDATVATGAAAMMAIRILLDHDV 298 (542)
Q Consensus 256 ~t~~~~~~~~~--~~~~~~~~l~d~~~a~g~~~~~~~~~~~~~~~ 298 (542)
.++.+..+|.+ .++++.|+|+|||+|||+|+++|++.|+++|+
T Consensus 105 ~t~~~~~~~~~lpdi~~r~vilvDd~laTG~T~~~ai~~L~~~G~ 149 (208)
T 2e55_A 105 ETLESHIYYSRLPELKGKIVVILDPMLATGGTLEVALREILKHSP 149 (208)
T ss_dssp TTCCEEEEEEECCCCBTSEEEEECSEESSSHHHHHHHHHHHTTCB
T ss_pred CCCceEEEecCCCCCCCCEEEEECCccccHHHHHHHHHHHHHcCC
Confidence 33444444433 35667899999999999999999999999996
No 164
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.45 E-value=0.011 Score=59.69 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
+.-|.+.|++|+|||++|+++++.++.+++. +++.++
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~-v~~~~l 87 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSDL 87 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEE-EEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEE-EchHHH
Confidence 3568899999999999999999999988664 344443
No 165
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.40 E-value=0.0032 Score=61.89 Aligned_cols=39 Identities=33% Similarity=0.456 Sum_probs=32.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
.+.-|.|.|++|+|||++|+++++.++.+++.+.+.+.+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~ 101 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM 101 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHh
Confidence 346788999999999999999999999998866555544
No 166
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.38 E-value=0.0016 Score=60.66 Aligned_cols=24 Identities=46% Similarity=0.583 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 45 VIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.++|.|++||||||+.+.|+..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999886
No 167
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.31 E-value=0.0021 Score=60.72 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=23.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35999999999999999999998874
No 168
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.30 E-value=0.0022 Score=59.66 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=23.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
+.+|+|+|++||||||+++.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999876
No 169
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0018 Score=68.96 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=30.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
|.=|.+.||+|+|||++|+++|.++|.+++. ++..++
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~-v~~s~l 251 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLK-LAAPQL 251 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEE-EEGGGG
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEE-Eehhhh
Confidence 3568899999999999999999999998764 344444
No 170
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.24 E-value=0.0032 Score=61.31 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=29.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
.-|.|.|++|+||||+++.|+..++.+++. ++..++
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~-i~~~~~ 81 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFT-ISGSDF 81 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEE-ECSCSS
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCCEEE-EeHHHH
Confidence 348899999999999999999999988653 344443
No 171
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.20 E-value=0.0024 Score=60.99 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=28.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
...|.|+|+|||||||+|..|+++++ .+|+.|..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~----~iIsdDs~ 67 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH----RLIADDRV 67 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC----EEEESSEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC----eEEecchh
Confidence 46899999999999999999999875 34566644
No 172
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.15 E-value=0.0048 Score=59.70 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=29.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
+.-|.|.|++|+||||+|+.++++++.+++.+ ++.++
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~-~~~~~ 75 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAM-AGAEF 75 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE-ETTTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEe-chHHH
Confidence 34578999999999999999999999887643 44443
No 173
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.13 E-value=0.023 Score=57.26 Aligned_cols=30 Identities=30% Similarity=0.199 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVT 73 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~ 73 (542)
..|.|.|++|+|||++|+.+++.++.+++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 457899999999999999999999988663
No 174
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.11 E-value=0.0032 Score=57.81 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKII 64 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La 64 (542)
.-+++|.|++||||||+++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4699999999999999999753
No 175
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.10 E-value=0.0018 Score=60.02 Aligned_cols=25 Identities=40% Similarity=0.666 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.+|+|.|+|||||||+++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999999874
No 176
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.04 E-value=0.0082 Score=53.38 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=39.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhhhchhc-HHHHHHHhccccCCCCCccccHHhHHHHHH
Q psy9618 46 IGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSFYRVLN-EEQHKKAAQNEYNFDHPDAFDFELLLPTLQ 115 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Ddfy~~l~-~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~ 115 (542)
|.|.|++|+|||++|+.|++.. +.+++ +++..+..... ......+..+-..+|+-+.+..+.-...+.
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~ 98 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV--YRELTPDNAPQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQ 98 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE--EEECCTTTSSCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE--EECCCCCcchhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHH
Confidence 6799999999999999999876 55665 44443322101 111222333334456555555544333333
No 177
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.99 E-value=0.0054 Score=60.38 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=29.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
+.-|.|.|++|+||||+|+++++.++.+++.+ ++.++
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v-~~~~~ 87 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFIRV-VGSEL 87 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE-EGGGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE-ehHHH
Confidence 34588999999999999999999999887644 44443
No 178
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.96 E-value=0.024 Score=56.26 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=23.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
..-|.|.|++|+|||++|+.+++.++
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999984
No 179
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.96 E-value=0.0043 Score=56.69 Aligned_cols=26 Identities=19% Similarity=0.459 Sum_probs=23.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+..++
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 36999999999999999999999984
No 180
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.95 E-value=0.003 Score=59.20 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
+|.|+|++||||||+|..|++. +.+.+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~~ 27 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQVL 27 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSEE
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCeE
Confidence 4789999999999999999987 76643
No 181
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.91 E-value=0.0058 Score=59.30 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 46 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
|+|.|++|+||||+++.|+..++.+.+. ++..++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~-~~~~~~ 85 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFIT-ASGSDF 85 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEE-EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE-eeHHHH
Confidence 8999999999999999999999876653 344333
No 182
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.90 E-value=0.0037 Score=57.42 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
...++|.|++|+||||+++.++..+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999999887
No 183
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.89 E-value=0.021 Score=61.65 Aligned_cols=40 Identities=35% Similarity=0.457 Sum_probs=29.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSF 80 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddf 80 (542)
..+.+|+|.|++||||||+++.|+..+.. -.|.+...|.|
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence 35689999999999999999999988731 23433445544
No 184
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.86 E-value=0.0078 Score=61.04 Aligned_cols=40 Identities=35% Similarity=0.471 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSF 80 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddf 80 (542)
..+.+|+|+|++||||||++..|+..+.. ..+.++++|.|
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 34689999999999999999999988731 23556677755
No 185
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.81 E-value=0.0056 Score=60.83 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=27.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q psy9618 46 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 79 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Dd 79 (542)
|++.|++|+||||+++.|+..++...+ .++..+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i-~i~g~~ 79 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFI-SVKGPE 79 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEE-EEETTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEE-EEEcHH
Confidence 999999999999999999999987544 334433
No 186
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.78 E-value=0.0064 Score=61.01 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=29.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
+..|.|.|++|+||||+|++|++.++.+++. +++.++
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~-v~~~~l 85 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANFIS-IKGPEL 85 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEEEE-ECHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCEEE-EEhHHH
Confidence 3468899999999999999999999977663 444443
No 187
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.77 E-value=0.023 Score=59.04 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=28.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTL 74 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~i 74 (542)
+.-|.|.|++|+|||++|++|+++++.+++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 35789999999999999999999999887643
No 188
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.70 E-value=0.0061 Score=61.71 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=24.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.+.+|+|.|++||||||+++.|+..+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999998874
No 189
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.68 E-value=0.0035 Score=55.75 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=39.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHhccccCCCCCccccHHhHHHHHH
Q psy9618 46 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQ 115 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~~~~~~fd~p~a~D~~lL~~~L~ 115 (542)
|.|.|++|+|||++|+.+++..+ +++ .+++..+...+.......+..+-..+|+.+.+..+.....++
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~-~~~-~~~~~~~~~~~~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~ 97 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT-PWV-SPARVEYLIDMPMELLQKAEGGVLYVGDIAQYSRNIQTGITF 97 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS-CEE-CCSSTTHHHHCHHHHHHHTTTSEEEEEECTTCCHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHhCC-CeE-EechhhCChHhhhhHHHhCCCCeEEEeChHHCCHHHHHHHHH
Confidence 66899999999999999998877 544 345544432221222222222333455555555544433333
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.68 E-value=0.0083 Score=59.46 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=27.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVT 73 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~ 73 (542)
+.-|.|.|++|+||||+|+++++.++.+++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 4578899999999999999999999987663
No 191
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.68 E-value=0.0086 Score=59.26 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=28.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
.-|.+.|++|+|||++|+.+++.++.+++. +++..+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~~~~~~-i~~~~~ 86 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIK-VEATKF 86 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEE-EEGGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE-Ecchhc
Confidence 356689999999999999999999987663 455444
No 192
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.67 E-value=0.0063 Score=57.52 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+++.|+..+-
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46999999999999999999988653
No 193
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.66 E-value=0.012 Score=53.14 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
+..|.|.|++|+||||+++.+++.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999997
No 194
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.0033 Score=67.22 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
|.=|.+.||+|+|||++|++||.+++.+++.+ +..++
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~v-s~s~L 279 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRV-IGSEL 279 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE-EGGGG
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeEEE-EhHHh
Confidence 34578999999999999999999999987643 44444
No 195
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.64 E-value=0.0061 Score=60.31 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+|+|+|++||||||+.+.|+..+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCC
Confidence 46999999999999999999988653
No 196
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=95.64 E-value=0.011 Score=63.77 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLS 76 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs 76 (542)
+.+.+|.+-|.-||||+|..+.|.+.|+-.++.++.
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a 76 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQS 76 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEE
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEE
Confidence 457999999999999999999999999866664443
No 197
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.63 E-value=0.0049 Score=59.93 Aligned_cols=24 Identities=33% Similarity=0.220 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 489999999999999999887554
No 198
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.61 E-value=0.0088 Score=59.04 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEE
Q psy9618 46 IGICGGSASGKTTVATKIIESLNVPWVT 73 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg~p~v~ 73 (542)
|+|.|++|+||||+++.|+..++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence 8999999999999999999999876653
No 199
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.60 E-value=0.006 Score=58.42 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.-+++|.|++||||||+++.|+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999999883
No 200
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=95.59 E-value=0.075 Score=53.18 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=30.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeec
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLS 76 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs 76 (542)
.+.+|.+-|.-||||++..+.|.+.|+-.++.+.+
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a 108 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTA 108 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEE
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEE
Confidence 57999999999999999999999999876665543
No 201
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.55 E-value=0.0085 Score=61.34 Aligned_cols=27 Identities=41% Similarity=0.535 Sum_probs=24.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..+.+|+|.|++||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999877
No 202
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.015 Score=61.94 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
.=|.+.||+|+|||++|+++|.++|.+++.+ +..++
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v-~~s~l 251 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFS-PASGI 251 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCEEEEE-EGGGT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEE-ehhhh
Confidence 4578899999999999999999999987743 44444
No 203
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.52 E-value=0.0061 Score=61.44 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=31.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV---PWVTLLSMDSF 80 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~---p~v~iIs~Ddf 80 (542)
.+.+|+++|++||||||++..|+..+.. ..+.++++|.|
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 4579999999999999999999987742 24666787775
No 204
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.45 E-value=0.0061 Score=58.77 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999886544
No 205
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.39 E-value=0.014 Score=60.15 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecch
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMD 78 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~D 78 (542)
.+.++|+|+|.+|+||||++..|+..+ |.+ +.+++.|
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~k-V~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHR-VAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCC-EEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCc-eEEEecC
Confidence 357899999999999999999999887 433 5566766
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.38 E-value=0.009 Score=60.87 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCe
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPW 71 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~ 71 (542)
-.+++.|++|+||||+++.|+..++.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 4688999999999999999999998764
No 207
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=95.38 E-value=0.085 Score=53.05 Aligned_cols=126 Identities=12% Similarity=0.123 Sum_probs=59.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHHh-ccccCCC-CCccccHHhHHHHHHHhHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAA-QNEYNFD-HPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~~-~~~~~fd-~p~a~D~~lL~~~L~~lk~g 120 (542)
+..|.|+|| ||+|+.++|.+.+.-.+...++. -+...+.... ..+|.|- ..+ +..+.+.+|
T Consensus 105 ~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~------TTR~~R~gE~~G~dY~Fv~s~e--------ef~~~i~~g 167 (295)
T 1kjw_A 105 ARPIIILGP---TKDRANDDLLSEFPDKFGSCVPH------TTRPKREYEIDGRDYHFVSSRE--------KMEKDIQAH 167 (295)
T ss_dssp CCCEEEEST---THHHHHHHHHHHCTTTEECCCCE------ECSCCCTTCCBTTTBEECSCHH--------HHHHHHHTT
T ss_pred CCEEEEECC---CHHHHHHHHHhhCccceeeeeee------cccCCCCccccCceeEecCCHH--------HHHHHHHCC
Confidence 456778898 79999999999864212111110 0000000000 1123332 211 123344556
Q ss_pred Ceeccceechhhchhcccc--cccCCCcEEEEEcccc-ccChhhhccCCEEEEEECCHHHHHHHhhhc
Q psy9618 121 KKVDVPIYNFVTHSRETRT--KPMYGANVIIFEGILA-FHNPQVLELLDMKVFVDTDADVRLARRLKR 185 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~--~~~~~~~vVIvEGi~~-~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~R 185 (542)
+-+++..|....+...... ..+.....+|+|.-.. ...-.....+-+.|||.++.-..++++..|
T Consensus 168 ~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~L~~R 235 (295)
T 1kjw_A 168 KFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKR 235 (295)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTT
T ss_pred CcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHHHHhc
Confidence 6666655543332221110 1112234567775321 110111235568999998866667775444
No 208
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.37 E-value=0.0076 Score=56.69 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 45 VIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~L 67 (542)
+|+|.|++||||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998877
No 209
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.35 E-value=0.01 Score=60.00 Aligned_cols=26 Identities=42% Similarity=0.519 Sum_probs=24.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.+.+|+|.|++||||||+++.|+..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999887
No 210
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.35 E-value=0.0082 Score=58.63 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987654
No 211
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.35 E-value=0.01 Score=60.29 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
+..+++|+|++||||||+.+.|....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 45799999999999999999998765
No 212
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.33 E-value=0.017 Score=55.90 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDS 79 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg--~p~v~iIs~Dd 79 (542)
.+..++++.|..|+||||++..|+..+. . .+.++++|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~-~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNY-KVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTS-CEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 4568999999999999999999998874 3 355677663
No 213
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.33 E-value=0.012 Score=60.76 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=26.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVT 73 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~ 73 (542)
.-|.+.|++|+||||+|+.|++.++.+++.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 346799999999999999999999988763
No 214
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.32 E-value=0.0068 Score=54.61 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..++|.|++||||||+++.++..+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999987
No 215
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.29 E-value=0.0074 Score=59.89 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 599999999999999999887654
No 216
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.28 E-value=0.011 Score=53.39 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
+..|.|.|++|+||||+++.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999998
No 217
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.28 E-value=0.0074 Score=60.23 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 489999999999999999886654
No 218
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.27 E-value=0.012 Score=62.48 Aligned_cols=38 Identities=37% Similarity=0.469 Sum_probs=31.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSF 80 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Ddf 80 (542)
.+.+|+++|++||||||++..|+..| |. .+.++++|-|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~-kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGY-KVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTC-CEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEecCcc
Confidence 47999999999999999999999887 33 3556788755
No 219
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=95.26 E-value=0.065 Score=57.90 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=29.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEe
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTL 74 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~i 74 (542)
+.+.+|.+-|.-||||+|..+.|.+.|+-.++.+
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V 331 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHI 331 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEE
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeE
Confidence 4679999999999999999999999997655433
No 220
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.25 E-value=0.0078 Score=58.55 Aligned_cols=23 Identities=13% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 44 FVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
-+++|.|++||||||+.+.|+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988543
No 221
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.25 E-value=0.011 Score=55.91 Aligned_cols=39 Identities=15% Similarity=0.076 Sum_probs=28.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEeecchhhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFY 81 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p--~v~iIs~Ddfy 81 (542)
...|.|.|++|+||||+++.+++.++.. .+..++++++.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 4678899999999999999999988521 22334555443
No 222
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.20 E-value=0.005 Score=60.15 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 46 IGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
|.+.|++|+|||++|++|++.++.+++
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~ 73 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFF 73 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 668999999999999999999998765
No 223
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.19 E-value=0.011 Score=58.64 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
+.|+|.|++||||||+.+.|+..+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999999999998876
No 224
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.18 E-value=0.01 Score=60.09 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=23.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+++.|+..+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3589999999999999999999987
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.18 E-value=0.016 Score=59.00 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSF 80 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddf 80 (542)
..+.+|+|+|++|+||||++..|+..+.. ..+.++++|-+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 35789999999999999999999988731 24556677754
No 226
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.18 E-value=0.011 Score=55.62 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+++.|+..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998654
No 227
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.18 E-value=0.014 Score=58.75 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=29.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhhh
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSFY 81 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Ddfy 81 (542)
..+.|.|++|+||||+++.+++.+ +.+.+ .+++.++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~-~i~~~~~~ 77 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI-YSSADDFA 77 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEE-EEEHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEE-EEEHHHHH
Confidence 357799999999999999999998 66654 44666654
No 228
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.17 E-value=0.01 Score=58.21 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 44 FVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
-+++|.|++||||||+.+.|+-.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999988754
No 229
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.17 E-value=0.0079 Score=57.46 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 44 FVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
-+++|.|++||||||+.+.|+-.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988654
No 230
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.15 E-value=0.0087 Score=58.64 Aligned_cols=24 Identities=46% Similarity=0.535 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999886654
No 231
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.14 E-value=0.0087 Score=59.17 Aligned_cols=25 Identities=40% Similarity=0.250 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999886654
No 232
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.13 E-value=0.0088 Score=58.33 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4599999999999999999886544
No 233
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.12 E-value=0.012 Score=61.41 Aligned_cols=28 Identities=29% Similarity=0.163 Sum_probs=25.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
..+|+|.|++||||||+++.|+..++..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~ 196 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGK 196 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCc
Confidence 4699999999999999999999988654
No 234
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.10 E-value=0.02 Score=53.75 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=28.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCCC-eEEeecch
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNVP-WVTLLSMD 78 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~p-~v~iIs~D 78 (542)
+..+|+|+|.+||||||+++.|+..+... .+.+++.|
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d 66 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD 66 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC
Confidence 46799999999999999999999886432 34444444
No 235
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.07 E-value=0.0094 Score=58.66 Aligned_cols=24 Identities=38% Similarity=0.318 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 499999999999999999886654
No 236
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.07 E-value=0.0096 Score=58.01 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999886554
No 237
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.06 E-value=0.016 Score=61.82 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=27.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVT 73 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~ 73 (542)
.-|.+.|++|+||||+|+.|++.++.+++.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~~~ 80 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCcee
Confidence 458899999999999999999999998773
No 238
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.06 E-value=0.0097 Score=57.55 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999886554
No 239
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.02 E-value=0.014 Score=60.40 Aligned_cols=27 Identities=41% Similarity=0.475 Sum_probs=24.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..+.+|+|.|++||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 346899999999999999999999887
No 240
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.01 E-value=0.012 Score=58.37 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 44 FVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
-+++|.|++||||||+.+.|+-.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999988764
No 241
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.025 Score=60.00 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=30.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
|.=|.+.||+|+|||++|+++|.++|.+++.+ +..++
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v-~~~~l 242 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV-NGSEF 242 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE-EGGGT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE-ecchh
Confidence 34588999999999999999999999987744 44443
No 242
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.00 E-value=0.01 Score=58.83 Aligned_cols=25 Identities=28% Similarity=0.157 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+-.+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3589999999999999999886554
No 243
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.97 E-value=0.013 Score=60.57 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=24.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
...++|.|++||||||+++.|+..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999999998864
No 244
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.96 E-value=0.011 Score=58.48 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 599999999999999999987654
No 245
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.95 E-value=0.019 Score=58.99 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=30.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
+.-|.|.|++|+|||++|++|++.++.+++. +++.++
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~-i~~~~l 153 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFS-ISASSL 153 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEE-EEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEE-EehHHh
Confidence 4578899999999999999999999987663 344444
No 246
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.95 E-value=0.011 Score=58.84 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||+.+.|+..+
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999886654
No 247
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.94 E-value=0.0091 Score=57.32 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999886554
No 248
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.93 E-value=0.015 Score=59.81 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
.-|.+.|++|+|||++|+++++.++.+++. +++.++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~-v~~~~l 120 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSDL 120 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEE-EEHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEE-eeHHHH
Confidence 347788999999999999999999987663 344444
No 249
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.92 E-value=0.011 Score=58.33 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999886544
No 250
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.92 E-value=0.015 Score=54.22 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..|.|.|++|+||||+++.++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999988
No 251
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.91 E-value=0.014 Score=61.93 Aligned_cols=41 Identities=29% Similarity=0.307 Sum_probs=33.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEeecchhhh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNV---PWVTLLSMDSFY 81 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~---p~v~iIs~Ddfy 81 (542)
..+.+|+++|.+|+||||++..|+..|.. ..+.++++|-+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 45789999999999999999999988732 246678888653
No 252
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=94.90 E-value=0.0052 Score=58.93 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=29.1
Q ss_pred hhhhhhhhhhhHhhhhhHHHHHHHHHhhCCCc
Q psy9618 268 LLDHDVLLMDATVATGAAAMMAIRILLDHDVP 299 (542)
Q Consensus 268 ~~~~~~~l~d~~~a~g~~~~~~~~~~~~~~~~ 299 (542)
+.++.|||+||+++||+|+..|++.|.++|+.
T Consensus 122 i~~~~VllvDd~l~TG~T~~~a~~~L~~~G~~ 153 (209)
T 1i5e_A 122 VEERDFIIVDPMLATGGSAVAAIDALKKRGAK 153 (209)
T ss_dssp TTTSEEEEECSEESSSHHHHHHHHHHHHTTCC
T ss_pred cCCCEEEEEcCCCcCHHHHHHHHHHHHHcCCC
Confidence 45678999999999999999999999999973
No 253
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.89 E-value=0.014 Score=60.43 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+|+|+|++||||||+.+.|+..+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 35999999999999999999988764
No 254
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.89 E-value=0.02 Score=62.08 Aligned_cols=39 Identities=31% Similarity=0.302 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSF 80 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Ddf 80 (542)
.++.+|+|+|.+||||||++..|+..| |. .+.+++.|.|
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~D~~ 140 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICADTF 140 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEecccc
Confidence 357899999999999999999999887 43 3556777765
No 255
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=94.86 E-value=0.012 Score=61.28 Aligned_cols=31 Identities=19% Similarity=0.059 Sum_probs=23.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcCCCe
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLNVPW 71 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~ 71 (542)
...+.|.|.|+.||||||+++.|++.|+...
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 4567999999999999999999999986443
No 256
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.86 E-value=0.021 Score=57.91 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc-CCCeE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL-NVPWV 72 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L-g~p~v 72 (542)
.-|.+.|++|+|||++|+++++.+ +.+++
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 467899999999999999999999 65554
No 257
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.85 E-value=0.012 Score=58.32 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999886544
No 258
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.82 E-value=0.018 Score=53.29 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=21.8
Q ss_pred ccCCCCCCccCCCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 27 TAGRPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 27 ~~~~ppw~~~~~~~~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
...+|++.....+....+.|+|.|.+|+||||+.+.|...
T Consensus 12 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 12 SGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ----------------CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCcccccccCCcCcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3345666544445566799999999999999999988653
No 259
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.80 E-value=0.012 Score=57.71 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999887654
No 260
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.80 E-value=0.015 Score=54.46 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=25.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD 78 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~D 78 (542)
.-+++|.|++||||||++..|+..-+. .+..++.+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~-~v~~i~~~ 54 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGK-KVAYVDTE 54 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCS-EEEEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCC-cEEEEECC
Confidence 358999999999999999999883333 23344544
No 261
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.79 E-value=0.012 Score=58.70 Aligned_cols=24 Identities=21% Similarity=0.052 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999886654
No 262
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.74 E-value=0.014 Score=54.45 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
.=|.|+|+||+||||+|..|.++ |..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~ 42 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQ 42 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCe
Confidence 56889999999999999999885 654
No 263
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.74 E-value=0.03 Score=52.73 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=28.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEeecch
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV-PWVTLLSMD 78 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~-p~v~iIs~D 78 (542)
+.+.|+|+|.+||||||+...|+..+.. ..+.++..|
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d 74 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 3588999999999999999999988632 234445543
No 264
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.74 E-value=0.013 Score=57.62 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999887654
No 265
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.68 E-value=0.017 Score=53.91 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
..+.|.|++|+||||+++.+++.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47889999999999999999999864
No 266
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.032 Score=59.05 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=34.7
Q ss_pred CCCCCccCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 30 RPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 30 ~ppw~~~~~~~~~~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
.|.||...|-. -|.=|.+.||+|+|||++|+++|.+++.+++.+ +..++
T Consensus 204 ~pe~f~~~Gi~-~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v-~~s~l 252 (437)
T 4b4t_I 204 HPELYEEMGIK-PPKGVILYGAPGTGKTLLAKAVANQTSATFLRI-VGSEL 252 (437)
T ss_dssp CCHHHHHHTCC-CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE-ESGGG
T ss_pred CHHHHHhCCCC-CCCCCceECCCCchHHHHHHHHHHHhCCCEEEE-EHHHh
Confidence 34455433321 234688999999999999999999999987744 44444
No 267
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.66 E-value=0.061 Score=60.80 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
..+.+.|++|+|||++|+.|++.++.+++ .+++..|
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~-~i~~s~~ 524 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELL-RFDMSEY 524 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEE-EEEGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEE-EEechhh
Confidence 36889999999999999999999986654 4566555
No 268
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.64 E-value=0.026 Score=60.73 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhh
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 81 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy 81 (542)
-|.|.|++|+||||++++++.+++.+++. ++..+|.
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~-is~~~~~ 86 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFH-ISGSDFV 86 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEE-EEGGGTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeee-CCHHHHH
Confidence 37899999999999999999999998774 3444443
No 269
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.64 E-value=0.016 Score=60.05 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
-+++|.|++||||||+.+.|+-.+.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 4899999999999999999977653
No 270
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.61 E-value=0.031 Score=59.43 Aligned_cols=31 Identities=29% Similarity=0.524 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEe
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN--VPWVTL 74 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg--~p~v~i 74 (542)
.-|.+.||+|+|||++|+++++.++ .+++.+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 4578999999999999999999999 776643
No 271
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=94.60 E-value=0.013 Score=60.03 Aligned_cols=29 Identities=21% Similarity=0.085 Sum_probs=22.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCe
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPW 71 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~ 71 (542)
.+.|.|.|+.||||||+++.|++.|+...
T Consensus 4 ~~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 4 LLRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 57899999999999999999999986443
No 272
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.59 E-value=0.024 Score=51.50 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
+++.|+|.|.+|+||||+.+.|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999999865
No 273
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.58 E-value=0.012 Score=60.87 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.+|+|+|++||||||+.+.|+..+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4899999999999999999987664
No 274
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.56 E-value=0.083 Score=59.79 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=45.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhhhchhc--H----HHHHHHhccccCCCCCccccHHhHHHHHH
Q psy9618 45 VIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSFYRVLN--E----EQHKKAAQNEYNFDHPDAFDFELLLPTLQ 115 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Ddfy~~l~--~----e~~~~~~~~~~~fd~p~a~D~~lL~~~L~ 115 (542)
.+.+.|++|+|||++|++|++.+ +.+++ .+++..|..... . +.......+-..||.-+....+.....++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i-~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~ 601 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMI-RIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQ 601 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEE-EEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceE-EEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHH
Confidence 68999999999999999999998 44544 557766653211 0 11111111123356656666555555555
Q ss_pred HhHcC
Q psy9618 116 RLKEG 120 (542)
Q Consensus 116 ~lk~g 120 (542)
-+..+
T Consensus 602 ~le~g 606 (758)
T 3pxi_A 602 VLEDG 606 (758)
T ss_dssp HHHHS
T ss_pred HhccC
Confidence 55443
No 275
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.54 E-value=0.018 Score=57.44 Aligned_cols=29 Identities=31% Similarity=0.269 Sum_probs=25.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
..|.|.|++|+||||+|+.+++.++.+++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 35679999999999999999999998765
No 276
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.53 E-value=0.016 Score=57.47 Aligned_cols=24 Identities=38% Similarity=0.310 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999987654
No 277
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.53 E-value=0.019 Score=54.67 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.-+++|.|++||||||++..|+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 359999999999999999999985
No 278
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.52 E-value=0.023 Score=59.06 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
..-+|+|+|++||||||+.+.|+..+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 346999999999999999999988763
No 279
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.49 E-value=0.024 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 45 VIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
+.+|.|++||||||+.++|.-.|+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 889999999999999999988875
No 280
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.48 E-value=0.018 Score=59.75 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 599999999999999999887654
No 281
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.48 E-value=0.012 Score=59.64 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 589999999999999999886654
No 282
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.46 E-value=0.021 Score=56.77 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|+|++||||||+++.|+..+
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999998876
No 283
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.41 E-value=0.024 Score=52.41 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+.|+|.|++||||||+.+.|+..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3579999999999999999998764
No 284
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.37 E-value=0.024 Score=57.55 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=23.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.+..|.|.|++|+||||+++.+++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999999988
No 285
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.35 E-value=0.023 Score=51.59 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=21.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
..+.+.|+|.|.+|+||||+.+.|..
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhc
Confidence 34568999999999999999998864
No 286
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.35 E-value=0.031 Score=57.00 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=23.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
+..|.|.|++|+||||+++.+++.+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5589999999999999999999987
No 287
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.35 E-value=0.023 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 46 IGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg 68 (542)
+.|.|++|+||||+++.+++.+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999999873
No 288
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.34 E-value=0.021 Score=59.71 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
-+++|.|++||||||+.+.|+-.+.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4899999999999999999976553
No 289
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.34 E-value=0.014 Score=62.08 Aligned_cols=40 Identities=30% Similarity=0.349 Sum_probs=31.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFY 81 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddfy 81 (542)
.+.+|+|+|++|+||||++..|+..+.. ..+.++++|.|.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 4679999999999999999999998731 235677888764
No 290
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.33 E-value=0.023 Score=60.04 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=24.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
.-+|+|+|++||||||+.+.|+..+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 469999999999999999999988853
No 291
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.32 E-value=0.018 Score=65.62 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=29.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 79 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Dd 79 (542)
+.-|.+.||+|+|||.+|+++|.+++.+++.+ +..+
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v-~~~~ 546 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISI-KGPE 546 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC-CHHH
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEe-ccch
Confidence 34577999999999999999999999987744 4433
No 292
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.31 E-value=0.035 Score=60.06 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=29.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhh
Q psy9618 46 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY 81 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy 81 (542)
|.|.|++|+||||++++|+..++.+++. ++..+|.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i~-i~g~~~~ 101 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFIT-ASGSDFV 101 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEEE-EEGGGGT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE-EehhHHH
Confidence 8999999999999999999999988663 4554543
No 293
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.30 E-value=0.021 Score=59.02 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999997655
No 294
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.27 E-value=0.022 Score=59.03 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 489999999999999999997655
No 295
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.23 E-value=0.023 Score=59.01 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
-+++|.|++||||||+.+.|+-.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 5899999999999999999976553
No 296
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.22 E-value=0.024 Score=57.61 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.+..+.|.|++|+||||+++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999999988
No 297
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.20 E-value=0.03 Score=61.08 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=27.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVT 73 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~ 73 (542)
..++++.|++|+||||+++.|+..++.++..
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~ 138 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVR 138 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 4589999999999999999999999876553
No 298
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.19 E-value=0.031 Score=60.47 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=27.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
+..+.|+|++|+||||+|+.+++.+|.+.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 358899999999999999999999997755
No 299
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.17 E-value=0.02 Score=57.45 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 489999999999999999886543
No 300
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.16 E-value=0.024 Score=59.07 Aligned_cols=24 Identities=29% Similarity=0.200 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 589999999999999999997655
No 301
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.14 E-value=0.044 Score=55.03 Aligned_cols=39 Identities=26% Similarity=0.185 Sum_probs=30.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSF 80 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddf 80 (542)
.+.+|+++|++|+||||++..|+..+.. ..+.++++|-+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 5689999999999999999999988731 24556676644
No 302
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.14 E-value=0.024 Score=59.00 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 489999999999999999997655
No 303
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.09 E-value=0.039 Score=56.20 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=23.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
..+.|.|++|+||||+++.+++.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3889999999999999999999984
No 304
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.09 E-value=0.034 Score=56.96 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
+..+|+|.|++||||||+.+.|+..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999998776
No 305
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.05 E-value=0.037 Score=49.54 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
....+-|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHh
Confidence 44568999999999999999998854
No 306
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.04 E-value=0.03 Score=53.30 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|+|++||||||++..++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999998887654
No 307
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.04 E-value=0.03 Score=56.38 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeEEe
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNVPWVTL 74 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~p~v~i 74 (542)
-|.+.|++|+|||++|+.|++.++.++..+
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~~i 77 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFHRI 77 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 467899999999999999999999876543
No 308
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.01 E-value=0.02 Score=59.03 Aligned_cols=24 Identities=25% Similarity=0.123 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 489999999999999999997655
No 309
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.99 E-value=0.039 Score=54.66 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=23.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
..+.+.|++|+||||+|+.|++.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 4789999999999999999999984
No 310
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.95 E-value=0.033 Score=52.79 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-|+++.|+|++|||||++|..++..+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998875543
No 311
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.95 E-value=0.027 Score=58.98 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 589999999999999999987543
No 312
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.95 E-value=0.036 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.+.+.|+|.|.+|+||||+.+.+..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 4568999999999999999988865
No 313
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.94 E-value=0.059 Score=54.81 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=25.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC--CeE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNV--PWV 72 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v 72 (542)
..+.|.|++|+|||++|+.+++.++. +++
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~~ 101 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFT 101 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSSCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcccCCcc
Confidence 57889999999999999999999984 544
No 314
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.92 E-value=0.045 Score=57.93 Aligned_cols=39 Identities=26% Similarity=0.185 Sum_probs=31.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSF 80 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddf 80 (542)
.+.+|+++|++||||||++..|+..+.. ..+.++++|-+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 5789999999999999999999998842 24556677643
No 315
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.91 E-value=0.032 Score=49.48 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
...+.|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34688999999999999999988653
No 316
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.90 E-value=0.017 Score=59.07 Aligned_cols=25 Identities=40% Similarity=0.632 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.+|+|+|++||||||+.+.|+..+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4899999999999999998876653
No 317
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.89 E-value=0.027 Score=52.44 Aligned_cols=38 Identities=18% Similarity=0.071 Sum_probs=22.4
Q ss_pred cCCCCCCccCCCC-CCCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 28 AGRPPWYNKAGEQ-VEPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 28 ~~~ppw~~~~~~~-~~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.|.|+|....-.+ ...+.|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 9 SGVDLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp ----------CGGGSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccccccccccccccCcEEEEECcCCCCHHHHHHHHhc
Confidence 3667776433322 3357899999999999999998865
No 318
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.89 E-value=0.037 Score=56.86 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
...+|+|+|++||||||+.+.|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999999865
No 319
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.87 E-value=0.032 Score=50.82 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+.|+|.|.+|+||||+.+.|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999998754
No 320
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.84 E-value=0.0028 Score=65.25 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=69.9
Q ss_pred hhhccccccccccccccccccccccc-cCceEEEEeccccccChHHHhhhcccccccccccCCCCchhhhccCCCCCCce
Q psy9618 303 IRRMWSVDVPIYNFVTHSRETRTKPM-YGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLPETPQIK 381 (542)
Q Consensus 303 ~~~g~~v~~P~y~f~~~~r~~~~~~~-~~~~vii~EGi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (542)
+.++.. ..|.|+|.++.+......+ .+..|||++|.+ ||.+.+... +.
T Consensus 69 i~~~~~-~~~~~dF~~~a~~~i~~i~~~g~~~IlvGGt~-ly~~~l~~~-----------------------------l~ 117 (340)
T 3d3q_A 69 ILPPDA-SFSAYEFKKRAEKYIKDITRRGKVPIIAGGTG-LYIQSLLYN-----------------------------YA 117 (340)
T ss_dssp CBCTTS-CCCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHHBC-----------------------------SC
T ss_pred HhCCcc-ccCHHHHHHHHHHHHHHHHhCCCcEEEECChh-hhHHHHHhc-----------------------------cc
Confidence 556666 8999999999985443333 577888888888 776666652 23
Q ss_pred eecc-cCCc--chhhhhhhcccccCcchhccccCCCCCCceeecCCChhhhhHHhHhhccCCChhHHHHHHH--HHHHHH
Q psy9618 382 GLHT-AGNR--TRVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPETPQIKGLHTFIRNKDTSRDEFIFYSK--RLIRLV 456 (542)
Q Consensus 382 ~~~~-~~~~--~rl~rr~~Rd~~~r~~~~~~~~~~~~~~nv~vl~~~pql~~l~tilRd~~t~~~~Fv~~~~--rla~ll 456 (542)
+|.+ ++.+ +|+.||+.| +.+||+. . ++.+|..+++....++.+.+ |+.|-|
T Consensus 118 ~~~~~~d~~~~~Rlrrrl~r-~~~~G~~--~---------------------l~~~L~~vdP~~a~~I~p~d~~Ri~RAL 173 (340)
T 3d3q_A 118 FEDESISEDKMKQVKLKLKE-LEHLNNN--K---------------------LHEYLASFDKESAKDIHPNNRKRVLRAI 173 (340)
T ss_dssp CC---CCHHHHHHHHHHHHT-TSSSCHH--H---------------------HHHHHHHHCHHHHHHSCTTCHHHHHHHH
T ss_pred ccCCCCChHHHHHHHHHHHH-HHhcCHH--H---------------------HHHHHHhhCcHHHhhcCccCchhhhhHH
Confidence 6777 6666 679999999 9999962 1 67788888888888886544 555544
No 321
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.83 E-value=0.041 Score=50.17 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=24.1
Q ss_pred CCCCccCCCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 31 PPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 31 ppw~~~~~~~~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
+||... ......+-|+|.|.+|+||||+.+.|...
T Consensus 11 ~~~~~~-~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 11 SSGLVP-RGSDYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp ---CCC-TTCSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccCCCC-cccCceeEEEEECCCCCCHHHHHHHHHcC
Confidence 555432 12334689999999999999999988653
No 322
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.82 E-value=0.039 Score=48.71 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+.|+|.|.+||||||+.+.|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999988753
No 323
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.79 E-value=0.038 Score=49.43 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
...+.|+|.|.+||||||+.+.|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34688999999999999999988653
No 324
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.79 E-value=0.037 Score=51.88 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=22.2
Q ss_pred CCCCCccCCCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 30 RPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 30 ~ppw~~~~~~~~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.|+|-. ......+-|+|.|.+|+||||+.+.|...
T Consensus 17 ~~~~m~--~~~~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 17 RGSHMD--PNQNVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp ------------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCC--cccceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 455643 23345689999999999999999988763
No 325
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.77 E-value=0.035 Score=54.73 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+++|.|++||||||++..|+..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999988754
No 326
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.77 E-value=0.02 Score=59.14 Aligned_cols=24 Identities=38% Similarity=0.296 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999997654
No 327
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.76 E-value=0.039 Score=58.75 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=26.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEE
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVT 73 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~ 73 (542)
..+.+.|++|+||||+|+.|++.++.+++.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~ 80 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVER 80 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 368899999999999999999999877663
No 328
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.74 E-value=0.036 Score=55.63 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=25.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeE
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWV 72 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v 72 (542)
+.++.+.|++|+||||+++.+++.++.+++
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~ 77 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMM 77 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEE
Confidence 457888899999999999999999986544
No 329
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.72 E-value=0.041 Score=55.39 Aligned_cols=38 Identities=34% Similarity=0.418 Sum_probs=30.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg--~p~v~iIs~Ddf 80 (542)
+.+|+++|++|+||||++..|+..+. -..+.++++|-+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 78999999999999999999998873 123556677754
No 330
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.71 E-value=0.041 Score=50.90 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.+.|+|.|++||||||+.+.|+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 478999999999999999998764
No 331
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.69 E-value=0.03 Score=53.63 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-|.+.||+|+||||+|.+|++.++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999985
No 332
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.69 E-value=0.04 Score=50.48 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
...+-|+|.|.+|+||||+.+.|...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 34589999999999999999988653
No 333
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.67 E-value=0.046 Score=57.99 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=28.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL-----NVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L-----g~p~v~iIs~Ddf 80 (542)
+.-+.|.|++|+||||+++.++..+ +.+.+ .+++..|
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~-~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVM-YITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEE-EEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEE-EeeHHHH
Confidence 4568899999999999999999988 55433 3455554
No 334
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.65 E-value=0.055 Score=47.93 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
+.+.+.|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34568999999999999999998854
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.64 E-value=0.049 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
+.+.|+|.|.+|+||||+.+.|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4589999999999999999988764
No 336
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=93.64 E-value=0.16 Score=54.44 Aligned_cols=25 Identities=16% Similarity=-0.064 Sum_probs=20.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
..+..|.|+||||+| +.++|.+.+.
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p 246 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEP 246 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCT
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCC
Confidence 345788899999999 9999988864
No 337
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.63 E-value=0.041 Score=49.28 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.+.|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999998864
No 338
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.61 E-value=0.032 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
..+-|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999998865
No 339
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.60 E-value=0.048 Score=47.80 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 44 FVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
+.|+|.|.+|+||||+.+.|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999988754
No 340
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.59 E-value=0.044 Score=49.99 Aligned_cols=26 Identities=31% Similarity=0.256 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
...+.|+|.|.+||||||+.+.|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34679999999999999999988764
No 341
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.59 E-value=0.065 Score=53.42 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=31.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDS 79 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Dd 79 (542)
...+.+|+|+|..|+||||+|-.||..| |. .|.+|++|-
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~-~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 3457899999999999999999999887 44 466889984
No 342
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=93.57 E-value=0.22 Score=50.05 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=36.1
Q ss_pred cCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHHHHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHH
Q psy9618 164 LLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHS 243 (542)
Q Consensus 164 l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~vl~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~ 243 (542)
..-+.|||.+|.-..++++++|...+ +.+.+..+..+. ...| ....|.||.|+. ++..+++|..
T Consensus 209 ~~pi~IFI~PpS~e~L~~r~~~r~~e---~~~~~~~r~~k~-e~e~-------~~~fD~vIvNdd-----le~a~~~l~~ 272 (292)
T 3tvt_A 209 LYPVAVFIKPKSVDSVMEMNRRMTEE---QAKKTYERAIKM-EQEF-------GEYFTGVVQGDT-----IEEIYSKVKS 272 (292)
T ss_dssp CCCEEEEECCSCHHHHHHTCTTSCTT---HHHHHHHHHHHH-HHHH-------TTTCSEEECCSS-----HHHHHHHHHH
T ss_pred ccceEEEEECCCHHHHHHHHhCCCch---hHHHHHHHHHHH-HHhh-------hhhCCEEEECcC-----HHHHHHHHHH
Confidence 34588999997777677666553221 223333332221 1111 234688988763 4555666666
Q ss_pred HHH
Q psy9618 244 QLQ 246 (542)
Q Consensus 244 ~L~ 246 (542)
.+.
T Consensus 273 iI~ 275 (292)
T 3tvt_A 273 MIW 275 (292)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 343
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.029 Score=60.05 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+++.|+..+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 589999999999999999997754
No 344
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.54 E-value=0.038 Score=48.83 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+-|+|.|.+|+||||+.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999988654
No 345
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.53 E-value=0.046 Score=47.77 Aligned_cols=24 Identities=17% Similarity=0.516 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
++.|++.|.+|+||||+.+.|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999988654
No 346
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.53 E-value=0.05 Score=58.64 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
+.-|.|.|++|+|||++|++|++.++.+++. +++.++
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~-vn~~~l 274 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFL-INGPEI 274 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSEEEE-EEHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCCEEE-EEchHh
Confidence 3468899999999999999999999987663 444444
No 347
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.52 E-value=0.048 Score=53.02 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEeecchhh
Q psy9618 45 VIGICGGSASGKTTVATKIIESLN---VPWVTLLSMDSF 80 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg---~p~v~iIs~Ddf 80 (542)
-|.|.|++|+|||++|+.|++.++ .+++ .+++..+
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~-~v~~~~~ 68 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFI-SLNCAAL 68 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEE-EEEGGGS
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeE-EEecCCC
Confidence 466899999999999999999875 3444 3454443
No 348
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.51 E-value=0.055 Score=57.39 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=28.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL-NVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L-g~p~v~iIs~Ddf 80 (542)
+.-|.+.|++|+|||++|++|++.+ +.+++ .+++.++
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~-~v~~~~l 204 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFF-SISSSDL 204 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEE-EECCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEE-EEeHHHH
Confidence 3568899999999999999999999 65554 3454444
No 349
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.50 E-value=0.065 Score=52.11 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=30.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddf 80 (542)
|.+|+|.|..|+||||+|..||..|.. ..|.+|++|.-
T Consensus 1 M~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 468888999999999999999998832 24667898843
No 350
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.49 E-value=0.041 Score=62.75 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=30.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddf 80 (542)
|.=|.+.||+|+|||++|+++|.++|.+++ .++..++
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~-~v~~~~l 274 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFF-LINGPEI 274 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEE-EEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEE-EEEhHHh
Confidence 567889999999999999999999998766 3444443
No 351
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.45 E-value=0.068 Score=52.77 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=30.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Ddf 80 (542)
|.+|+|+|..|+||||+|-.||..| |. .|.+|++|.-
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~-rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGK-KVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence 5789999999999999999999887 44 3667898843
No 352
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.36 E-value=0.057 Score=47.37 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.+-|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 578999999999999999988653
No 353
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.35 E-value=0.065 Score=48.62 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
...+.|+|.|.+|+||||+.++|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34689999999999999999999765
No 354
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.27 E-value=0.054 Score=47.48 Aligned_cols=24 Identities=13% Similarity=0.437 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.+-|+|.|.+|+||||+.+.+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999988653
No 355
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.27 E-value=0.032 Score=51.78 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKII 64 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La 64 (542)
....|+|.|++||||||+.+.|+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 35799999999999999998774
No 356
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.26 E-value=0.043 Score=55.54 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 46 IGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg 68 (542)
+.|.|++|+||||+++.|++.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 78999999999999999999763
No 357
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.25 E-value=0.077 Score=53.82 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=31.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDS 79 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Dd 79 (542)
...||+|+|--|.||||+|-.|+..| |.+ |-+|++|-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gkk-VllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKR-VLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC-EEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 56899999999999999999998877 554 66789983
No 358
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.21 E-value=0.049 Score=51.83 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=28.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcCC--CeEEeecchh
Q psy9618 45 VIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDS 79 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Dd 79 (542)
.|+|+|..|+||||+|..||..|.. ..|.+|++|-
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4777999999999999999999843 3466788885
No 359
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.09 E-value=0.031 Score=60.63 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..+|+|+|++||||||+.+.|+..+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3479999999999999999886654
No 360
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.07 E-value=0.053 Score=55.74 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
...+++|.|++||||||+++.|+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999876
No 361
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.03 E-value=0.064 Score=54.84 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=28.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDS 79 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Dd 79 (542)
+..+|+|+|++|+||||+++.|+..+ |. .+.+++.|-
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~-~v~v~~~d~ 94 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGL-KVAVIAVDP 94 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTC-CEEEEEECC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC-eEEEEeecC
Confidence 46899999999999999999998776 33 244555553
No 362
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.00 E-value=0.054 Score=48.27 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.+.|+|.|.+|+||||+.+.|..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999998864
No 363
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.00 E-value=0.061 Score=48.54 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
..+-|+|.|.+|+||||+.+.|..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 458999999999999999998875
No 364
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.98 E-value=0.064 Score=48.39 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
...+.|+|.|.+|+||||+.+.|...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34589999999999999999988654
No 365
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.95 E-value=0.057 Score=56.96 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..+|+|.|++||||||+.+.|+..+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4599999999999999999997643
No 366
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.92 E-value=0.049 Score=62.28 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=29.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 79 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Dd 79 (542)
+.-|.|.|++|+||||+++.|+..++.+++ .++..+
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~~~i-~v~~~~ 273 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFF-LINGPE 273 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTCEEE-EEEHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCcEE-EEEchH
Confidence 456899999999999999999999987765 334433
No 367
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.90 E-value=0.053 Score=54.98 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 46 IGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg 68 (542)
+.+.|++|+||||+++.+++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 78999999999999999999874
No 368
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.90 E-value=0.06 Score=49.20 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
+.+.|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHc
Confidence 358899999999999999998865
No 369
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.89 E-value=0.054 Score=48.38 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKII 64 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La 64 (542)
...+.|+|.|.+|+||||+.+.|.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 345899999999999999998774
No 370
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.89 E-value=0.063 Score=49.42 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
...+.|+|.|.+|+||||+.+.|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34689999999999999999988654
No 371
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.88 E-value=0.066 Score=47.82 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.+.+.|+|.|.+|+||||+.+.|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999998864
No 372
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.87 E-value=0.052 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
+.+.|+|.|.+|+||||+.+.|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999887743
No 373
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=92.86 E-value=0.32 Score=47.42 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.4
Q ss_pred CEEEEEEcC-CCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGG-SASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~-sGSGKTTvAk~La~~L 67 (542)
+..|.|+|. +|+|||+++-.|++.|
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L 46 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYC 46 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 568888887 9999999999999988
No 374
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.85 E-value=0.067 Score=48.39 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
...|+|.|.+|+||||+.+.|...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999998753
No 375
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.85 E-value=0.084 Score=48.22 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+-|+|.|.+|+||||+.+.|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 4578999999999999999988653
No 376
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.81 E-value=0.07 Score=46.95 Aligned_cols=23 Identities=13% Similarity=0.472 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.+-|+|.|.+|+||||+.+.|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999998865
No 377
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.80 E-value=0.075 Score=48.58 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.+.|+|.|.+|+||||+.+.|...-
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 5899999999999999999987654
No 378
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=92.80 E-value=0.27 Score=55.40 Aligned_cols=171 Identities=12% Similarity=0.127 Sum_probs=79.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecchhhhchhcHHHHHHH-hccccCCC-CCccccHHhHHHHHHHhHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKA-AQNEYNFD-HPDAFDFELLLPTLQRLKEG 120 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~Ddfy~~l~~e~~~~~-~~~~~~fd-~p~a~D~~lL~~~L~~lk~g 120 (542)
+..|.|+||+ |+|+.++|.+.+.-.+...++. -+...+... ...+|.|- ..+ +..+.++++
T Consensus 531 ~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~------TTR~~r~gE~~G~dY~Fv~s~~--------~f~~~i~~~ 593 (721)
T 2xkx_A 531 ARPIIILGPT---KDRANDDLLSEFPDKFGSCVPH------TTRPKREYEIDGRDYHFVSSRE--------KMEKDIRAH 593 (721)
T ss_pred CCEEEEECCC---HHHHHHHHHHhCccceeecccc------cccCCCCCccCCceeEEecCHH--------HHHHHHhcC
Confidence 4677899994 9999999998763111111110 000000000 01133342 222 223445556
Q ss_pred Ceeccceechhhchhcccc--cccCCCcEEEEEcccc-ccChhhhccCCEEEEEECCHHHHHHHhhhcchhhhcCCHHHH
Q psy9618 121 KKVDVPIYNFVTHSRETRT--KPMYGANVIIFEGILA-FHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGV 197 (542)
Q Consensus 121 ~~v~~P~yd~~~~~~~~~~--~~~~~~~vVIvEGi~~-~~~~~l~~l~Dl~IfLdad~d~rl~Rrl~Rd~~~rgr~~~~v 197 (542)
+-+++-.|....+...... ..+.....+|+|.-.. ...-....++-+.|||..+.-..|+++..|. .+ +.+
T Consensus 594 ~flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~l~~R~-----t~-~~~ 667 (721)
T 2xkx_A 594 KFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRI-----TE-EQA 667 (721)
T ss_pred CceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHHHhccC-----CH-HHH
Confidence 6666655543333221110 1122345567776321 1001112455689999998777777754443 21 222
Q ss_pred HHHHHhhccchhhccccCCCCcccEEEECCCCCHHHHHHHHHHHHHHHH
Q psy9618 198 IKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246 (542)
Q Consensus 198 l~q~~~~v~p~y~~~i~p~~~~ADiVI~~~~~n~~ai~~iv~~I~~~L~ 246 (542)
...+....+- + ..+....|++|.|+ +++..++++...+.
T Consensus 668 ~~rl~~a~~~--e---~~~~~~fd~vi~Nd-----~l~~a~~~l~~~i~ 706 (721)
T 2xkx_A 668 RKAFDRATKL--E---QEFTECFSAIVEGD-----SFEEIYHKVKRVIE 706 (721)
T ss_pred HHHHHHHHHH--H---HhccccCcEEEECc-----CHHHHHHHHHHHHH
Confidence 2222221100 0 01223468888876 34555566665554
No 379
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.80 E-value=0.081 Score=55.56 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-++.|+|++||||||++..|+-..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Confidence 3599999999999999999887554
No 380
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.80 E-value=0.056 Score=54.35 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.++++.|++||||||+.+.|+ .+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 589999999999999999998 44
No 381
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.80 E-value=0.068 Score=47.50 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
..+-|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 357899999999999999998753
No 382
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.77 E-value=0.07 Score=48.61 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
..+.|+|.|.+|+||||+.+.|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999998864
No 383
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.75 E-value=0.071 Score=47.05 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.+-|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 47899999999999999998864
No 384
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.73 E-value=0.062 Score=49.21 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
....+.|+|.|.+|+||||+.+.|...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 345689999999999999999988654
No 385
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.73 E-value=0.063 Score=49.81 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
...+.|+|.|.+|+||||+.+.|...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 34579999999999999999988653
No 386
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.67 E-value=0.072 Score=49.70 Aligned_cols=27 Identities=30% Similarity=0.220 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
...+.|+|.|++|+||||+.+.|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346789999999999999999997754
No 387
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.63 E-value=0.071 Score=47.06 Aligned_cols=23 Identities=13% Similarity=0.533 Sum_probs=20.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.+.|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999998864
No 388
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.63 E-value=0.073 Score=49.48 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.++.++|++||||||++-.++.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 588899999999999997777665
No 389
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.62 E-value=0.052 Score=49.50 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q psy9618 44 FVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~ 65 (542)
+.|+|.|.+|+||||+.+.|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999998864
No 390
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.59 E-value=0.067 Score=47.94 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=21.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
...+-|+|.|.+|+||||+.+.|..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 3457899999999999999998864
No 391
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.55 E-value=0.068 Score=48.18 Aligned_cols=25 Identities=16% Similarity=0.496 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+.|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999999998754
No 392
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.54 E-value=0.072 Score=49.76 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+.|+|.|.+|+||||+.+.|...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4579999999999999999988764
No 393
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.54 E-value=0.14 Score=49.65 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=29.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDS 79 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Dd 79 (542)
+....|.+.|++|+||||++-.++..+ |.. +.++++|.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVR-VMAGVVET 44 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCC-EEEEECCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCC-EEEEEeCC
Confidence 345789999999999999998888877 443 44567764
No 394
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.52 E-value=0.064 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 46 IGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg 68 (542)
+.+.|++|+||||+++.+++.++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999875
No 395
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.50 E-value=0.066 Score=57.58 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
-+++|.|++||||||+.+.|+-.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 5899999999999999999988764
No 396
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.50 E-value=0.1 Score=52.16 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEeecch
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD 78 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p~v~iIs~D 78 (542)
.++.|.|+.|+||||+++.+++.++..++ .+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~-~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYI-YLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEE-EEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEE-EEEch
Confidence 38999999999999999999999876533 34443
No 397
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.49 E-value=0.078 Score=48.36 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+-|+|.|.+|+||||+.+.|...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3578999999999999999988663
No 398
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.48 E-value=0.078 Score=47.22 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+.|+|.|.+|+||||+.+.|...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3578999999999999999988654
No 399
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.47 E-value=0.089 Score=48.28 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=22.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
...+-|+|.|.+|+||||+.+.|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44689999999999999999988763
No 400
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.46 E-value=0.066 Score=47.77 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+-|+|.|.+|+||||+.+.|...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3578999999999999999988653
No 401
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.44 E-value=0.084 Score=47.82 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.+.|+|.|.+|+||||+.+.|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999988654
No 402
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=92.42 E-value=0.3 Score=51.04 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=20.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.+..|.|+|||| +|+.++|.+.+.
T Consensus 231 ~~r~iVlsGPsg---~tl~~~L~~~~p 254 (391)
T 3tsz_A 231 FLRPVTIFGPIA---DVAREKLAREEP 254 (391)
T ss_dssp SCCCEEEESTTH---HHHHHHHHHHCT
T ss_pred CCCEEEEECCCH---HHHHHHHHhhCc
Confidence 456788999998 899999998864
No 403
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.39 E-value=0.063 Score=58.51 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.--+++|.|++||||||+.+.|+-.+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34599999999999999999997654
No 404
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.36 E-value=0.075 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+.|+|.|.+|+||||+.+.|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4589999999999999999988653
No 405
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.30 E-value=0.081 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.+.|+|.|.+|+||||+.+.|..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 57899999999999999998864
No 406
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.29 E-value=0.13 Score=48.84 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=29.7
Q ss_pred CCEEEEEEc-CCCCcHHHHHHHHHHHcCCC---eEEeecchhh
Q psy9618 42 EPFVIGICG-GSASGKTTVATKIIESLNVP---WVTLLSMDSF 80 (542)
Q Consensus 42 ~~~IIgI~G-~sGSGKTTvAk~La~~Lg~p---~v~iIs~Ddf 80 (542)
.+.+|+|++ ..|+||||+|-.||..|... .+.+|++|.-
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 356777775 57899999999999988543 4667888854
No 407
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.27 E-value=0.065 Score=56.75 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy9618 45 VIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~ 66 (542)
-|+|.|++||||||+.+.|+..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3999999999999999988653
No 408
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.27 E-value=0.088 Score=47.22 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.+.|+|.|.+|+||||+.+.|...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 578999999999999999988753
No 409
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.27 E-value=0.07 Score=55.19 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.+++|.|++||||||+.+.|+..+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 489999999999999999887543
No 410
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.25 E-value=0.048 Score=54.90 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 46 IGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg 68 (542)
|.|.|++|+|||++|+.+++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88999999999999999999986
No 411
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.25 E-value=0.058 Score=58.83 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+..+
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999987654
No 412
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.22 E-value=0.087 Score=46.35 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.+-|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 367999999999999999988643
No 413
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.22 E-value=0.073 Score=47.87 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKII 64 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La 64 (542)
.+.+.|+|.|.+|+||||+.+.|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 346899999999999999988764
No 414
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.19 E-value=0.087 Score=46.57 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKII 64 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La 64 (542)
.+-|+|.|.+|+||||+.+.|.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999885
No 415
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.17 E-value=0.076 Score=53.53 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-|.+.|++|+|||++|.+|+..+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999998764
No 416
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.16 E-value=0.11 Score=46.82 Aligned_cols=24 Identities=13% Similarity=0.441 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.+.|+|.|.+|+||||+.+.|...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 578999999999999999998754
No 417
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.12 E-value=0.067 Score=58.74 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+..+.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999877653
No 418
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.10 E-value=0.071 Score=54.25 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=24.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.+..|.|.|++|+|||++++.+++.|.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999993
No 419
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.08 E-value=0.061 Score=59.05 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+..+.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC
Confidence 35899999999999999998876553
No 420
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.06 E-value=0.086 Score=53.44 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
..+.|.|++|+||||+++.+++.++.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46789999999999999999999974
No 421
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.06 E-value=0.12 Score=47.16 Aligned_cols=25 Identities=12% Similarity=0.438 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
...+-|+|.|.+|+||||+.+.|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 3468999999999999999998865
No 422
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.04 E-value=0.1 Score=47.40 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
...+.|+|.|.+|+||||+.+.|..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999988753
No 423
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.01 E-value=0.096 Score=47.65 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
+.+.|+|.|.+|+||||+.+.|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 468999999999999999998865
No 424
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.01 E-value=0.084 Score=48.34 Aligned_cols=25 Identities=12% Similarity=0.465 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+.|+|.|.+|+||||+.+.|...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 4589999999999999999988653
No 425
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.98 E-value=0.066 Score=53.73 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.+++|.|+|||||||+.+.|+..+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 589999999999999999886544
No 426
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.96 E-value=0.093 Score=53.97 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
-+++|.|++||||||+.+.|+..+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 49999999999999999999998753
No 427
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.96 E-value=0.075 Score=53.97 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNVP 70 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~p 70 (542)
.-|.|+|+||+||||+|..|.++ |..
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~ 170 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR-GHR 170 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-TCE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc-CCc
Confidence 57999999999999999999886 644
No 428
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.95 E-value=0.1 Score=47.51 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+.|+|.|.+|+||||+.+.|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999988753
No 429
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.95 E-value=0.1 Score=47.41 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
...+.|+|.|.+|+||||+.+.|...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999988763
No 430
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.93 E-value=0.11 Score=47.63 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+.|+|.|.+||||||+.+.|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999999988754
No 431
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.92 E-value=0.31 Score=50.43 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=27.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchhh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Ddf 80 (542)
..+|.|.|++||||||+|..++... |. .+..++++.-
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~-~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGG-TCAFIDAEHA 113 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCC-eEEEEECCCC
Confidence 3588889999999999999998765 33 3445676643
No 432
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.89 E-value=0.093 Score=55.72 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
-+++|.|++||||||+.+.|+..+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 58999999999999999999998753
No 433
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.88 E-value=0.092 Score=46.29 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q psy9618 44 FVIGICGGSASGKTTVATKII 64 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La 64 (542)
+-|+|.|.+|+||||+.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 579999999999999998774
No 434
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.83 E-value=0.11 Score=46.52 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+.|+|.|.+|+||||+.+.|...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4578999999999999999988653
No 435
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.82 E-value=0.081 Score=57.66 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999997654
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.82 E-value=0.08 Score=58.60 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999987654
No 437
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.81 E-value=0.11 Score=46.66 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+-|+|.|.+|+||||+.+.+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999988653
No 438
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.80 E-value=0.41 Score=51.31 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=23.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
.-++.|+|++|+||||++..++...-.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 458899999999999999999988743
No 439
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.79 E-value=0.14 Score=51.85 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..++.|.|++||||||+|..++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 4599999999999999999999875
No 440
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.74 E-value=0.11 Score=50.37 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
..+.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999998864
No 441
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.70 E-value=0.091 Score=47.21 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
+.+.|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 357899999999999999998864
No 442
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.70 E-value=0.14 Score=47.13 Aligned_cols=38 Identities=26% Similarity=0.241 Sum_probs=28.5
Q ss_pred CEEEEEE-cCCCCcHHHHHHHHHHHcCC--CeEEeecchhh
Q psy9618 43 PFVIGIC-GGSASGKTTVATKIIESLNV--PWVTLLSMDSF 80 (542)
Q Consensus 43 ~~IIgI~-G~sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddf 80 (542)
|.+|+|+ +..|+||||+|..|+..|.. ..+.++++|.-
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ 41 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3577777 66789999999999988832 23667888843
No 443
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.67 E-value=0.13 Score=51.18 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=23.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.++.|.|+.|+||||+++.+++.++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 4889999999999999999999986
No 444
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.67 E-value=0.12 Score=46.86 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
+.+.|+|.|.+|+||||+.+.|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999998864
No 445
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.66 E-value=0.14 Score=48.48 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
+.+.|+|.|.+|+||||+.+.|..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 368999999999999999998854
No 446
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.65 E-value=0.086 Score=58.35 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
--++||.|++||||||+.+.|+-.+
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 4599999999999999999997755
No 447
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.58 E-value=0.11 Score=50.85 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.+.|++.|.+||||||+.++|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999988543
No 448
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.56 E-value=0.13 Score=46.87 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.+.|+|.|.+|+||||+.+.+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999999887653
No 449
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.55 E-value=0.098 Score=51.83 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 45 VIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
-+.+.|++|+||||+++.+++.++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 388999999999999999999874
No 450
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.53 E-value=0.1 Score=47.84 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=20.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
+.+.|+|.|.+|+||||+.+++..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998865
No 451
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.52 E-value=0.098 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q psy9618 44 FVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~ 65 (542)
+.|+|.|.+|+||||+.+.|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998864
No 452
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.51 E-value=0.13 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 45 VIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-|.|.|++|+|||++|+.|++..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHS
T ss_pred cEEEECCCCchHHHHHHHHHHhC
Confidence 46799999999999999999976
No 453
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.50 E-value=0.12 Score=47.78 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
..+-|+|.|.+|+||||+.+.|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999998865
No 454
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.50 E-value=0.11 Score=48.41 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=20.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
+.+.|+|.|.+|+||||+.+.|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988764
No 455
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.48 E-value=0.12 Score=46.65 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.+.+.|+|.|.+|+||||+.+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3568999999999999999998754
No 456
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.48 E-value=0.17 Score=47.48 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..++.++|++||||||.+-.++.++
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4799999999999999999888887
No 457
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.44 E-value=0.11 Score=53.76 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..++.|.|++||||||++..++..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999999875
No 458
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.43 E-value=0.12 Score=47.65 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.+.|+|.|.+|+||||+.+.|...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 588999999999999999998753
No 459
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.39 E-value=0.1 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.+-|+|.|++|+||||+.+.|+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 47889999999999999998753
No 460
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.37 E-value=0.14 Score=49.35 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..++.++|++||||||.+-.++.++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4799999999999999998888877
No 461
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.32 E-value=0.13 Score=46.19 Aligned_cols=23 Identities=22% Similarity=0.253 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.+-|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 57899999999999999998864
No 462
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=91.31 E-value=0.11 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q psy9618 46 IGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~L 67 (542)
+.+.|++|+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 463
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.31 E-value=0.098 Score=57.89 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
-+++|.|++||||||+.+.|+-.+
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999987654
No 464
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.26 E-value=0.12 Score=47.21 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKII 64 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La 64 (542)
..+.|+|.|.+|+||||+.+.|.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 35789999999999999998774
No 465
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.25 E-value=0.097 Score=48.40 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=20.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHH
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKII 64 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~La 64 (542)
....+.|+|.|.+|+||||+.+.|.
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHH
Confidence 3456899999999999999998763
No 466
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.24 E-value=0.13 Score=45.18 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q psy9618 45 VIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~ 66 (542)
-|+|.|.+|+||||+.+.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988654
No 467
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.22 E-value=0.13 Score=48.87 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.-++.|+|++|+|||++|..++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358899999999999999887653
No 468
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.22 E-value=0.066 Score=58.98 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
-+++|.|++||||||+.+.|+..+.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 5899999999999999998876553
No 469
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.20 E-value=0.073 Score=47.94 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=11.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
..+.|+|.|.+|+||||+.+.|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999988754
No 470
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.18 E-value=0.07 Score=58.87 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+..+.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 45999999999999999998876553
No 471
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.16 E-value=0.057 Score=59.26 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+..+.
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCC
Confidence 35999999999999999998866543
No 472
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.15 E-value=0.13 Score=47.54 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKII 64 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La 64 (542)
+...|++.|.+|+||||+.++|.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45789999999999999998773
No 473
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.14 E-value=0.11 Score=56.53 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-++||.|++||||||+.+.|+-.+
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4699999999999999999987654
No 474
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.13 E-value=0.09 Score=58.19 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
..-+++|.|++||||||+.+.|+-.+
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34599999999999999999987654
No 475
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.12 E-value=0.1 Score=47.30 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.+.|+|.|.+|+||||+.+.|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999988654
No 476
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.06 E-value=0.11 Score=56.30 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy9618 45 VIGICGGSASGKTTVATKII 64 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La 64 (542)
+++|.|++||||||+++.++
T Consensus 41 ~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
No 477
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.90 E-value=0.16 Score=46.68 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKII 64 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La 64 (542)
.+.+.|+|.|.+|+||||+.+.|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999999773
No 478
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.89 E-value=0.073 Score=58.59 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
.-+++|.|++||||||+.+.|+..+.
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 35899999999999999998866553
No 479
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.89 E-value=0.059 Score=54.56 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 44 FVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.+++|.|+|||||||+.+.|+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 59999999999999999988544
No 480
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.86 E-value=0.13 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 46 IGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 46 IgI~G~sGSGKTTvAk~La~~Lg 68 (542)
+.+.|++|+||||+++.+++.+.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 88999999999999999999873
No 481
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.84 E-value=0.17 Score=45.30 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
+-+.+|.|+.||||||+..+|.-.|
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999886554
No 482
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.83 E-value=0.13 Score=52.79 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=27.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEeecchh
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDS 79 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L---g~p~v~iIs~Dd 79 (542)
..++.|.|++||||||+|..++... |. .+..++++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~-~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGG-IAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEECCC
Confidence 4589999999999999999998765 22 243456553
No 483
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.79 E-value=0.13 Score=47.46 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
..+-|+|.|.+|+||||+.+.|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 358899999999999999998853
No 484
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.77 E-value=0.22 Score=49.85 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=30.1
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHHHHcCC--CeEEeecchhh
Q psy9618 42 EPFVIGICGG-SASGKTTVATKIIESLNV--PWVTLLSMDSF 80 (542)
Q Consensus 42 ~~~IIgI~G~-sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddf 80 (542)
.+.+|+|+|+ .|+||||+|..||..|.. ..|.+|++|--
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4578989886 699999999999988731 34667888853
No 485
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.76 E-value=0.023 Score=55.04 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHcC
Q psy9618 45 VIGICGGSASGKTTVATKIIESLN 68 (542)
Q Consensus 45 IIgI~G~sGSGKTTvAk~La~~Lg 68 (542)
+++|.|++||||||+.++|+-.+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 678999999999999999988774
No 486
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.75 E-value=0.15 Score=46.85 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
..+-|+|.|.+|+||||+.+.|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999998854
No 487
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.75 E-value=0.14 Score=45.70 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
..+-|+|.|.+|+||||+.+.+...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999999988763
No 488
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.70 E-value=0.14 Score=47.00 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKII 64 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La 64 (542)
..+-|+|.|.+|+||||+.+.|.
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHh
Confidence 35789999999999999999874
No 489
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.66 E-value=0.21 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 43 PFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
.+-|+|.|++||||||+.+.|+..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTC
T ss_pred CEEEEEECCCCCcHHHHHHHHhCC
Confidence 467899999999999999988654
No 490
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=90.64 E-value=0.034 Score=51.38 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=21.2
Q ss_pred cCCCCCCccCCCCCCCEEEEEEcCCCCcHHHHHHHH
Q psy9618 28 AGRPPWYNKAGEQVEPFVIGICGGSASGKTTVATKI 63 (542)
Q Consensus 28 ~~~ppw~~~~~~~~~~~IIgI~G~sGSGKTTvAk~L 63 (542)
.|+|.= .+.......+.|+|.|.+|+||||+.+.|
T Consensus 19 ~G~pm~-~~~~~~~~~~ki~vvG~~~~GKSsli~~l 53 (199)
T 3l0i_B 19 QGRPMS-SMNPEYDYLFKLLLIGDSGVGKSCLLLRF 53 (199)
T ss_dssp -------CC-CCCSEEEEEEEECCTTSCCTTTTTSS
T ss_pred CCCccc-ccCcccCcceEEEEECCCCCCHHHHHHHH
Confidence 466631 22223345689999999999999998765
No 491
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.60 E-value=0.25 Score=48.73 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=30.1
Q ss_pred CCEEEEEEcC-CCCcHHHHHHHHHHHcCC--CeEEeecchhh
Q psy9618 42 EPFVIGICGG-SASGKTTVATKIIESLNV--PWVTLLSMDSF 80 (542)
Q Consensus 42 ~~~IIgI~G~-sGSGKTTvAk~La~~Lg~--p~v~iIs~Ddf 80 (542)
.+.+|+|+|+ .|.||||+|..||..|.. ..|.+|++|-.
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4578999876 789999999999998831 34667888843
No 492
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.58 E-value=0.2 Score=48.58 Aligned_cols=39 Identities=31% Similarity=0.329 Sum_probs=29.5
Q ss_pred CCEEEEE-EcCCCCcHHHHHHHHHHHcCC-CeEEeecchhh
Q psy9618 42 EPFVIGI-CGGSASGKTTVATKIIESLNV-PWVTLLSMDSF 80 (542)
Q Consensus 42 ~~~IIgI-~G~sGSGKTTvAk~La~~Lg~-p~v~iIs~Ddf 80 (542)
++.+|+| .|..|+||||+|-.||..|.. ..|.+|++|-.
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la~g~~VlliD~D~~ 66 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDMDTQ 66 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHTTTSCEEEEEECTT
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4567777 567789999999999999851 23667888854
No 493
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.56 E-value=0.18 Score=46.57 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
..+.|+|.|.+|+||||+.+.|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 358999999999999999998864
No 494
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=90.52 E-value=0.15 Score=54.31 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 44 FVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.-+.+.|++|+|||++++.|++.+
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999997
No 495
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.50 E-value=0.12 Score=56.98 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCC
Q psy9618 44 FVIGICGGSASGKTTVATKIIESLNV 69 (542)
Q Consensus 44 ~IIgI~G~sGSGKTTvAk~La~~Lg~ 69 (542)
..++|.|++|+||||+++.|+..++.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 47899999999999999999998864
No 496
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=90.49 E-value=0.16 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHH
Q psy9618 40 QVEPFVIGICGGSASGKTTVATKI 63 (542)
Q Consensus 40 ~~~~~IIgI~G~sGSGKTTvAk~L 63 (542)
.+++..|.|.|.+||||||+++.+
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 456789999999999999999988
No 497
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.46 E-value=0.15 Score=49.36 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
..+.|+|.|.+|+||||+.+.|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 468999999999999999998854
No 498
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.42 E-value=0.17 Score=47.41 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q psy9618 41 VEPFVIGICGGSASGKTTVATKIIE 65 (542)
Q Consensus 41 ~~~~IIgI~G~sGSGKTTvAk~La~ 65 (542)
.+.+.|+|.|.+|+||||+.+.|..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 3458999999999999999998863
No 499
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=90.34 E-value=0.11 Score=48.54 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q psy9618 42 EPFVIGICGGSASGKTTVATKIIES 66 (542)
Q Consensus 42 ~~~IIgI~G~sGSGKTTvAk~La~~ 66 (542)
....|+|.|.+|+||||+.+.|...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3578999999999999999987543
No 500
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.28 E-value=0.17 Score=45.76 Aligned_cols=25 Identities=36% Similarity=0.318 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHc
Q psy9618 43 PFVIGICGGSASGKTTVATKIIESL 67 (542)
Q Consensus 43 ~~IIgI~G~sGSGKTTvAk~La~~L 67 (542)
.+-|+|.|.+|+||||+.+.+...+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999999999998776554
Done!