RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9618
(542 letters)
>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
also known as uridine kinase or uridine-cytidine kinase
(UCK), catalyzes the reversible phosphoryl transfer from
ATP to uridine or cytidine to yield UMP or CMP. In the
primidine nucleotide-salvage pathway, this enzyme
combined with nucleoside diphosphate kinases further
phosphorylates UMP and CMP to form UTP and CTP. This
kinase also catalyzes the phosphorylation of several
cytotoxic ribonucleoside analogs such as 5-flurrouridine
and cyclopentenyl-cytidine.
Length = 198
Score = 328 bits (843), Expect = e-111
Identities = 115/200 (57%), Positives = 152/200 (76%), Gaps = 2/200 (1%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA 104
+IGI GGS SGKTTVA +IIE L P V ++S DS+Y+ L+ E+ ++ N N+DHPDA
Sbjct: 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNN--NYDHPDA 58
Query: 105 FDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLEL 164
FDF+LL+ LQ LK GK V++P+Y+F THSR T +Y A+VII EGILA ++ ++ +L
Sbjct: 59 FDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETVTVYPADVIILEGILALYDKELRDL 118
Query: 165 LDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIV 224
+D+K+FVDTDADVRL RR++RDI+ RGRDLE VI QY+ VKP FI P+ +AD+I+
Sbjct: 119 MDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVII 178
Query: 225 PRGGENCVAIDLIVQHIHSQ 244
PRGG+N VAIDLIVQHI S+
Sbjct: 179 PRGGDNHVAIDLIVQHIKSK 198
Score = 66.8 bits (164), Expect = 9e-13
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 308 SVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLER 350
SV++P+Y+F THSR T +Y A+VII EGILA ++ ++ +
Sbjct: 76 SVEIPVYDFKTHSRLKETVTVYPADVIILEGILALYDKELRDL 118
>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 271 bits (695), Expect = 1e-88
Identities = 95/207 (45%), Positives = 135/207 (65%), Gaps = 8/207 (3%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---VLNEEQHKKAAQNEYNF 99
P +IGI GGS SGKTTVA+ I E L + ++ DS+Y+ L+ E+ K N+
Sbjct: 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKT-----NY 60
Query: 100 DHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNP 159
DHPDAFD +LL+ L+ LK GK +++P+Y++ H+R T + +VII EGIL +
Sbjct: 61 DHPDAFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDE 120
Query: 160 QVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVH 219
++ +L+D+K+FVDT D+RL RRLKRD+ RGR LE VI QY++ V+P FI PS +
Sbjct: 121 RLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRY 180
Query: 220 ADIIVPRGGENCVAIDLIVQHIHSQLQ 246
ADII+P GG+N VAID++ I L+
Sbjct: 181 ADIIIPEGGKNRVAIDILKAKIRQLLE 207
Score = 56.7 bits (138), Expect = 3e-09
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 308 SVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLE 349
++++P+Y++ H+R T + +VII EGIL + ++ +
Sbjct: 83 AIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRD 124
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism].
Length = 218
Score = 243 bits (623), Expect = 9e-78
Identities = 97/199 (48%), Positives = 142/199 (71%), Gaps = 2/199 (1%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHP 102
+IGI GGS SGKTTVA ++ E L V V ++S+D +Y+ ++ +N+ N+DHP
Sbjct: 8 VIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYK--DQSHLPFEERNKINYDHP 65
Query: 103 DAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVL 162
+AFD +LL+ L+ LK+GK VD+P+Y++ TH+RE T + +V+I EGIL ++ ++
Sbjct: 66 EAFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLR 125
Query: 163 ELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADI 222
+L+D+K+FVDTDADVRL RR+KRD+ RGRDLE VI+QYV V+P + FI P+ +ADI
Sbjct: 126 DLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADI 185
Query: 223 IVPRGGENCVAIDLIVQHI 241
I+P GG+N VA+DL+ I
Sbjct: 186 IIPSGGKNEVAVDLLQAKI 204
Score = 47.7 bits (114), Expect = 4e-06
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 308 SVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLER 350
VD+P+Y++ TH+RE T + +V+I EGIL ++ ++ +
Sbjct: 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDL 127
>gnl|CDD|232890 TIGR00235, udk, uridine kinase. Model contains a number of longer
eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 207
Score = 243 bits (621), Expect = 1e-77
Identities = 89/203 (43%), Positives = 133/203 (65%), Gaps = 4/203 (1%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQ-NEYNFDHPD 103
+IGI GGS SGKTTVA KI E L + ++S D++Y ++ H + A+ + NFDHPD
Sbjct: 8 IIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY---KDQSHLEMAERKKTNFDHPD 64
Query: 104 AFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLE 163
AFD +LL L+ LK G +DVP+Y++V H+R T + +V+I EGI+ + ++ +
Sbjct: 65 AFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDERLRD 124
Query: 164 LLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADII 223
L+D+K+FVDT D+RL RR++RDI RGR L+ VI QY V+P + F+ P+ +AD+I
Sbjct: 125 LMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLI 184
Query: 224 VPRGGENCVAIDLIVQHIHSQLQ 246
+P GG N VAI+++ I L+
Sbjct: 185 IPEGGRNEVAINVLDTKIKHLLE 207
Score = 44.3 bits (105), Expect = 4e-05
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 309 VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLE 349
+DVP+Y++V H+R T + +V+I EGI+ + ++ +
Sbjct: 84 IDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDERLRD 124
>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family. In
Arabidopsis the region carries two binding domains, a
phosphoribosylpyrophosphate-binding domain and, at the
very C-terminus, a uracil-binding domain.
Length = 197
Score = 196 bits (500), Expect = 6e-60
Identities = 63/198 (31%), Positives = 98/198 (49%), Gaps = 10/198 (5%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVT--------LLSMDSFYRVLNEEQHKKAAQNE 96
+IG+ G S +GKTTVA + V D FY L+ E K+A N
Sbjct: 1 IIGVTGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHPEDRKRAGNNH 60
Query: 97 YNFDHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPM-YGANVIIFEGILA 155
Y+F P+A DF+LL + LKEG D PIYN VT + + GA+++ +EG+
Sbjct: 61 YSFFSPEANDFDLLYEQFKELKEGGSGDKPIYNHVTGEADPTWPELIEGADILFYEGLHG 120
Query: 156 FHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAP 215
++ +V +LLD+K+ VD D ++ ++++RD+ RG LE V KP + +I P
Sbjct: 121 LYDERVAQLLDLKIGVDPDINLEWIQKIQRDMAERGHSLEAVTDSI-LRRKPDYVNYICP 179
Query: 216 SMVHADIIVPRGGENCVA 233
+ D+ R +
Sbjct: 180 QFSYTDLNFQRVPTVDTS 197
Score = 43.9 bits (104), Expect = 5e-05
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 308 SVDVPIYNFVTHSRETRTKPM-YGANVIIFEGILAFHNPQVLE 349
S D PIYN VT + + GA+++ +EG+ ++ +V +
Sbjct: 86 SGDKPIYNHVTGEADPTWPELIEGADILFYEGLHGLYDERVAQ 128
>gnl|CDD|140322 PTZ00301, PTZ00301, uridine kinase; Provisional.
Length = 210
Score = 127 bits (319), Expect = 8e-34
Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 6/197 (3%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPW----VTLLSMDSFYRVLNEEQHKKAAQNEYNFD 100
VIGI G S SGK++++T I+ L + ++ D +YR ++ ++ + N+D
Sbjct: 5 VIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR--DQSNIPESERAYTNYD 62
Query: 101 HPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQ 160
HP + + +LL L+ LK GK V +P Y++V H+R M +V+I EGIL F N +
Sbjct: 63 HPKSLEHDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAE 122
Query: 161 VLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHA 220
+ +D +FVDT D+ L RR KRD+ RGR E VI+QY V+P + ++ PS V+A
Sbjct: 123 LRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYA 182
Query: 221 DIIVPRGGENCVAIDLI 237
DIIVP +N VA+ ++
Sbjct: 183 DIIVPSWKDNSVAVGVL 199
Score = 38.8 bits (90), Expect = 0.004
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 294 LDHDVPEGYIRRMWS---VDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQV 347
L+HD+ ++R + S V +P Y++V H+R M +V+I EGIL F N ++
Sbjct: 67 LEHDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAEL 123
>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
is a family of proteins highly similar to the uridine
monophosphate kinase (UMPK, EC 2.7.1.48), also known as
uridine kinase or uridine-cytidine kinase (UCK).
Length = 179
Score = 110 bits (276), Expect = 5e-28
Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 12/184 (6%)
Query: 45 VIGICGGSASGKTTVATKI--IESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHP 102
V+GI G S SGKTT A K+ +N ++S+D +Y + + + N+D
Sbjct: 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDE-----DGNYDFE 55
Query: 103 DAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGAN-VIIFEGILAFHNPQV 161
D +LL L L GK+V++PIY+F T R K + V+I EGI A N ++
Sbjct: 56 SILDLDLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYAL-NERL 114
Query: 162 LELLDMKVFVDT-DADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHA 220
LLD++V V RL RR+ RDI RG E I + ++ P+ FI P + A
Sbjct: 115 RSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSV--PSGEEFIIPPLQEA 172
Query: 221 DIIV 224
I++
Sbjct: 173 AIVM 176
Score = 34.6 bits (80), Expect = 0.060
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 309 VDVPIYNFVTHSRETRTKPMYGAN-VIIFEGILAFHNP 345
V++PIY+F T R K + V+I EGI A +
Sbjct: 76 VELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNER 113
>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
the Benson-Calvin cycle in chloroplasts or
photosynthetic prokaryotes. This enzyme catalyzes the
phosphorylation of D-ribulose 5-phosphate to form
D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 273
Score = 105 bits (264), Expect = 2e-25
Identities = 54/182 (29%), Positives = 97/182 (53%), Gaps = 10/182 (5%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA 104
+IG+ G S GK+T ++ VT++ +D ++ L+ + K+ P A
Sbjct: 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHS-LDRKGRKETGITAL---DPRA 56
Query: 105 FDFELLLPTLQRLKEGKKVDVPIYNFVTHSRET--RTKPMYGANVIIFEGILAFHNPQVL 162
+F+L+ L+ LKEG+ ++ PIYN VT + KP +++ EG+ ++ +V
Sbjct: 57 NNFDLMYEQLKALKEGQAIEKPIYNHVTGLIDPPELIKP---TKIVVIEGLHPLYDERVR 113
Query: 163 ELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADI 222
ELLD V++D +V+ A +++RD+ RG LE V+ + KP F +I P +AD+
Sbjct: 114 ELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLAS-IEARKPDFEAYIDPQKQYADV 172
Query: 223 IV 224
++
Sbjct: 173 VI 174
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 106 bits (266), Expect = 3e-25
Identities = 60/241 (24%), Positives = 112/241 (46%), Gaps = 19/241 (7%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHP 102
P ++G+ G S GKTT + + L VT++ D ++ + +Q K+ P
Sbjct: 8 PVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHS-YDRKQRKELGITAL---DP 63
Query: 103 DAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMY--GANVIIFEGILAFHNPQ 160
A + +++ L+ LK G+ + PIYN H T P Y +++ EG+ ++ +
Sbjct: 64 RANNLDIMYEHLKALKTGQPILKPIYN---HETGTFDPPEYIEPNKIVVVEGLHPLYDER 120
Query: 161 VLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHA 220
V EL D KV++D +V++A ++KRD+ RG E V+ + + +P F +I P A
Sbjct: 121 VRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAE-IEAREPDFEAYIRPQRQWA 179
Query: 221 DIIV----PRGGEN-----CVAIDLIVQHIHSQLQAVLLMDATVATGAAAMMAIRILLDH 271
D+++ + +N + + L+++ L D T + +A+R D
Sbjct: 180 DVVIQFLPTQLIDNDEENKVLRVRLVLRPGIPHPDPAYLFDEGKLTCSYPGIALRYGPDR 239
Query: 272 D 272
Sbjct: 240 Y 240
>gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase.
Length = 656
Score = 94.5 bits (235), Expect = 2e-20
Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 18/182 (9%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF---YRVLNEEQHKKAAQNEYNFDH 101
++G+ G S +GKT K++ + P + ++SMD++ R+++ NFD
Sbjct: 67 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVISMDNYNDSSRIIDG-----------NFDD 113
Query: 102 PDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRET-RTKPMYGANVIIFEGILAFHNPQ 160
P D++ LL + LK GK V VPIY+F + SR RT + + ++I EGI A + +
Sbjct: 114 PRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYAL-SEK 172
Query: 161 VLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHA 220
+ LLD++V V L +R+ RDI G++ E +I Q V P + FI P + A
Sbjct: 173 LRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTA 232
Query: 221 DI 222
I
Sbjct: 233 HI 234
Score = 36.8 bits (85), Expect = 0.029
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 292 ILLD--HDVPEGYIRRMWSVDVPIYNFVTHSRET-RTKPMYGANVIIFEGILAFHNPQVL 348
LLD HD+ G SV VPIY+F + SR RT + + ++I EGI A
Sbjct: 121 TLLDNIHDLKAGK-----SVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE---- 171
Query: 349 ERGFKLRPTL 358
KLRP L
Sbjct: 172 ----KLRPLL 177
>gnl|CDD|215198 PLN02348, PLN02348, phosphoribulokinase.
Length = 395
Score = 87.6 bits (217), Expect = 1e-18
Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 29/203 (14%)
Query: 42 EPFVIGICGGSASGKTTVATKIIE-----------------SLNVPWVTLLSMDSFYRVL 84
VIG+ S GK+T ++ +L T++ +D Y L
Sbjct: 48 GTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDD-YHSL 106
Query: 85 NEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVT---HSRETRTKP 141
+ K+ + P A +F+L+ ++ LKEGK V+ PIYN VT E P
Sbjct: 107 DRTGRKEKGVTALD---PRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPP 163
Query: 142 MYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQY 201
+++ EG+ ++ +V +LLD +++D DV+ A +++RD+ RG LE IK
Sbjct: 164 ----KILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKIQRDMAERGHSLES-IKAS 218
Query: 202 VNMVKPAFSTFIAPSMVHADIIV 224
+ KP F +I P +AD+++
Sbjct: 219 IEARKPDFDAYIDPQKQYADVVI 241
>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism].
Length = 283
Score = 75.8 bits (187), Expect = 3e-15
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 31/162 (19%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFY---RVLNEEQ--HKKAA 93
PF+IGI G A GK+T A + L+ P V L++MD F+ VL+E +K
Sbjct: 82 PFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGF 141
Query: 94 QNEYNFDHPDAFDFELLLPTLQRLKEGK-KVDVPIYNFVTH-----SRETRTKPMYGANV 147
P+++D LL L +K GK V P+Y+ + + + + +P ++
Sbjct: 142 --------PESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQP----DI 189
Query: 148 IIFEGILAFHNPQ----VLELLDMKVFVDTDADVRLARRLKR 185
+I EG + + + + D ++VD D ++ R ++R
Sbjct: 190 LIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIER 231
>gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme
involved in the metabolism of nicotinamide adenine
dinucleotide (NAD+). This enzyme catalyzes the
phosphorylation of nicotinamide riboside (NR) to form
nicotinamide mononucleotide (NMN). It defines the NR
salvage pathway of NAD+ biosynthesis in addition to the
pathways through nicotinic acid mononucleotide (NaMN).
This enzyme can also phosphorylate the anticancer drug
tiazofurin, which is an analog of nicotinamide riboside.
Length = 187
Score = 70.4 bits (173), Expect = 4e-14
Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 18/156 (11%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA 104
++GI G + SGKTT+A + L P ++ D F++ E++ +D +A
Sbjct: 1 IVGISGVTNSGKTTLAKLLQRIL--PNCCVIHQDDFFK--PEDEIPVDENGFKQWDVLEA 56
Query: 105 FDFELLLPTLQRLKE-----------GKKVDVPIYNFVTHSRETRTKPMYGAN---VIIF 150
D E ++ TL +E G + D E + GA ++I
Sbjct: 57 LDMEAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIV 116
Query: 151 EGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRD 186
+G L ++ +++L D++ F+ + RR R
Sbjct: 117 DGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREART 152
>gnl|CDD|181310 PRK08233, PRK08233, hypothetical protein; Provisional.
Length = 182
Score = 64.8 bits (158), Expect = 4e-12
Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 34/205 (16%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNE-EQHKKAAQNEYNFDH 101
+I I S GKTT+ ++ L + Y N E K N+
Sbjct: 3 TKIITIAAVSGGGKTTLTERLTHKLKN---SKALYFDRYDFDNCPEDICKWIDKGANYS- 58
Query: 102 PDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQV 161
+ L+ +Q L VD II + A+ N ++
Sbjct: 59 --EWVLTPLIKDIQELIAKSNVDY----------------------IIVDYPFAYLNSEM 94
Query: 162 LELLDMKVFVDTDADVRLARRLKRDIL-ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHA 220
+ +D+ +F+DT D+ +ARR+ RD G ++ +K Y+N +P + + +A
Sbjct: 95 RQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNA 154
Query: 221 DIIVPRGGENCVAIDLIVQHIHSQL 245
DI++ + ++++ I+ I +L
Sbjct: 155 DIVL----DGALSVEEIINQIEEEL 175
>gnl|CDD|223113 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 210
Score = 65.3 bits (160), Expect = 4e-12
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 461 LSLLPFKVSIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512
+SL+ I ++ A P+V+I T+A+D +NE Y++PG+G+ GDR FGT+
Sbjct: 159 VSLVAAPEGIKAVEKAHPDVEIYTAAIDEGLNEKGYIVPGLGDAGDRLFGTK 210
Score = 43.7 bits (104), Expect = 7e-05
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 422 LPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLP 465
+ + P +K T +R+K+T EF + RL+ A LP
Sbjct: 6 VIDHPLVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRDLP 49
Score = 36.8 bits (86), Expect = 0.013
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 266 RILLDHDVLLMDATVATGAAAMMAIRILLDHDVPE 300
+ + V+++D +ATG +A+ AI +L P+
Sbjct: 120 EDIDERTVIVLDPMLATGGSAIAAIDLLKKRGGPK 154
Score = 33.7 bits (78), Expect = 0.15
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 248 VLLMDATVATGAAAMMAIRILLDH 271
V+++D +ATG +A+ AI +L
Sbjct: 127 VIVLDPMLATGGSAIAAIDLLKKR 150
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 61.1 bits (149), Expect = 1e-10
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 25/167 (14%)
Query: 44 FVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFY---RVLNEEQ--HKKAAQ 94
++GI G +GK+T+A + L +P + + MD F+ VL+ +K A
Sbjct: 34 TIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQV-PMDGFHLDNAVLDAHGLRPRKGA- 91
Query: 95 NEYNFDHPDAFDFELLLPTLQRLKEG-KKVDVPIYNFVTH-SRETRTKPMYGANVIIFEG 152
P+ FD L L+RL+ G +V P+++ A ++I EG
Sbjct: 92 -------PETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEG 144
Query: 153 -ILAFHNP---QVLELLDMKVFVDTDADVRLARRLKRDILARGRDLE 195
L ++ L D +F+D A+V R + R + A G E
Sbjct: 145 NYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARKL-AGGLSPE 190
>gnl|CDD|130163 TIGR01091, upp, uracil phosphoribosyltransferase. A fairly deep
split in phylogenetic and UPGMA trees separates this
mostly prokaryotic set of uracil
phosphoribosyltransferases from a mostly eukaryotic set
that includes uracil phosphoribosyltransferase, uridine
kinases, and other, uncharacterized proteins [Purines,
pyrimidines, nucleosides, and nucleotides, Salvage of
nucleosides and nucleotides].
Length = 207
Score = 56.1 bits (136), Expect = 4e-09
Identities = 20/43 (46%), Positives = 33/43 (76%)
Query: 470 IHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512
I ++ A P+V I T+A+D ++N+N Y++PG+G+ GDR FGT+
Sbjct: 165 IEAVEKAHPDVDIYTAAIDEKLNDNGYIVPGLGDAGDRAFGTK 207
>gnl|CDD|200027 TIGR00554, panK_bact, pantothenate kinase, bacterial type. Shown
to be a homodimer in E. coli. This enzyme catalyzes the
rate-limiting step in the biosynthesis of coenzyme A. It
is very well conserved from E. coli to B. subtilis, but
differs considerably from known eukaryotic forms,
described in a separate model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pantothenate
and coenzyme A].
Length = 290
Score = 55.3 bits (133), Expect = 2e-08
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 21/165 (12%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPW-----VTLLSMDSFYRVLNEEQHKKAAQNEY 97
P++I I G A GK+T A +I+++L W V L++ D F + + + +
Sbjct: 62 PYIISIAGSVAVGKSTTA-RILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKK- 119
Query: 98 NFDHPDAFDFELLLPTLQRLKEGK-KVDVPIYNFVTHSRET-RTKPMYGANVIIFEGILA 155
P+++D L+ L LK GK V P+Y+ +T+ K + +++I EG+
Sbjct: 120 --GFPESYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNV 177
Query: 156 FHNPQ----------VLELLDMKVFVDTDADVRLARRLKRDILAR 190
+ V + +D ++VD + D+ + R + R
Sbjct: 178 LQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRFLKFR 222
>gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction
only].
Length = 300
Score = 55.3 bits (133), Expect = 3e-08
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 13/188 (6%)
Query: 36 KAGEQVEPFVIGICGGSASGKTTVATKI---IESLNVPWVTLLSMDSFYRVLNEEQHKKA 92
A E+ P ++GI G SGK+T++ I + + + LS+D Y + ++ + A
Sbjct: 43 WAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLT-HADRLRLA 101
Query: 93 AQNEYNFDH---PDAFDFELLLPTLQRLKEGKK-VDVPIYNFVTHS----RETRT-KPMY 143
Q P D L L L + G V +P ++ + R +T +
Sbjct: 102 RQVNPLLQTRGLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKF 161
Query: 144 GANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVN 203
+++I EG P ELL V A+ R D LA R L I +
Sbjct: 162 EVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRADVNDKLAPYRPLFDRIDSLIL 221
Query: 204 MVKPAFST 211
+ P +T
Sbjct: 222 LTAPDINT 229
>gnl|CDD|234653 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.
Length = 209
Score = 53.9 bits (131), Expect = 3e-08
Identities = 19/36 (52%), Positives = 30/36 (83%)
Query: 476 AFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGT 511
A P+V+I T+A+D ++NE+ Y++PG+G+ GDR FGT
Sbjct: 173 AHPDVEIYTAAIDEKLNEHGYIVPGLGDAGDRLFGT 208
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 51.9 bits (124), Expect = 3e-08
Identities = 36/149 (24%), Positives = 52/149 (34%), Gaps = 36/149 (24%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA 104
+I I G SGK+T+A K+ E L +P ++S+D R + +
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLGIP---VISLDDLLREEGLAEL------DDGELDDID 51
Query: 105 FDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLEL 164
D ELL L L + + +G+ LE
Sbjct: 52 IDLELLEEILDELAK--------------------------QEWVIDGVRESTLELRLEE 85
Query: 165 LDMKVFVDTDADVRLARRLKRDILARGRD 193
D+ VF+D R LKR L RGR
Sbjct: 86 ADLVVFLDLPLPACRFRLLKR-RLQRGRG 113
>gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated.
Length = 223
Score = 53.1 bits (128), Expect = 7e-08
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 22/195 (11%)
Query: 43 PFVIGICGGSASGKTTVA---TKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNF 99
P + I G +ASGKTT A + I+ P V S+D F+ ++++ ++ +
Sbjct: 22 PLRVAIDGITASGKTTFADELAEEIKKRGRP-VIRASIDDFHN-PRVIRYRRGRESAEGY 79
Query: 100 DHPDAFDF----ELLLPTLQRLKEG-KKVDVPIYNFVTHSRETRTKPMYGAN--VIIFEG 152
DA+D+ LLL L G ++ ++ T P+ A V+I +G
Sbjct: 80 YE-DAYDYTALRRLLLDPLG--PNGDRQYRTASHDLKT-DIPVHNPPLLAAPNAVLIVDG 135
Query: 153 ILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTF 212
P++ +L D K+F+DTD +V R KRD A G E K Y+ PA +
Sbjct: 136 TFL-LRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEE-AEKMYLARYHPAQKLY 193
Query: 213 IA---PSMVHADIIV 224
IA P AD+++
Sbjct: 194 IAEANPK-ERADVVI 207
>gnl|CDD|235466 PRK05439, PRK05439, pantothenate kinase; Provisional.
Length = 311
Score = 53.7 bits (130), Expect = 9e-08
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 35/156 (22%)
Query: 43 PFVIGICGGSASGKTTVATKIIESL-----NVPWVTLLSMDSF-Y--RVLNEEQ--HKKA 92
PF+IGI G A GK+T A +++++L P V L++ D F Y VL E +K
Sbjct: 86 PFIIGIAGSVAVGKSTTA-RLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKG 144
Query: 93 AQNEYNFDHPDAFDFELLLPTLQRLKEGKK-VDVPIYNFVTHSR-----ETRTKPMYGAN 146
F P+++D LL L +K GK V P+Y+ + + +T +P +
Sbjct: 145 ------F--PESYDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQP----D 192
Query: 147 VIIFEGILAFHNPQ------VLELLDMKVFVDTDAD 176
++I EG+ Q V + D ++VD D D
Sbjct: 193 ILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADED 228
>gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the
phosphorylation of pantothenic acid to form
4'-phosphopantothenic, which is the first of five steps
in coenzyme A (CoA) biosynthetic pathway. The reaction
carried out by this enzyme is a key regulatory point in
CoA biosynthesis.
Length = 220
Score = 51.5 bits (124), Expect = 2e-07
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 18/146 (12%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPW-----VTLLSMDSF-YRVLNEEQHKKAAQNEYN 98
+IGI G A GK+T A +++++L W V L++ D F Y N+E ++ +
Sbjct: 1 IIGIAGSVAVGKSTTA-RVLQALLSRWPDHPNVELITTDGFLYP--NKELIERGLMDRKG 57
Query: 99 FDHPDAFDFELLLPTLQRLKEGKK-VDVPIYNFVTHSRETRTK-PMYGANVIIFEGILAF 156
F P+++D E LL L+ +K GKK V +P+Y+ +T+ K + +++I EG+
Sbjct: 58 F--PESYDMEALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVL 115
Query: 157 HNPQ-----VLELLDMKVFVDTDADV 177
Q V + D ++VD D D
Sbjct: 116 QTGQNPRLFVSDFFDFSIYVDADEDD 141
>gnl|CDD|215297 PLN02541, PLN02541, uracil phosphoribosyltransferase.
Length = 244
Score = 50.2 bits (120), Expect = 9e-07
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 477 FPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512
FP + + +D E+NE Y++PG+G+ GDR FGTE
Sbjct: 209 FPGLHVYAGIIDEEVNEKGYIVPGLGDAGDRSFGTE 244
>gnl|CDD|169051 PRK07667, PRK07667, uridine kinase; Provisional.
Length = 193
Score = 46.6 bits (111), Expect = 7e-06
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 44 FVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSF-------YRVLNEEQHKKAA 93
F++GI G S SGKTT + E++ +P + +D + Y EE +
Sbjct: 18 FILGIDGLSRSGKTTFVANLKENMKQEGIP-FHIFHIDDYIVERNKRYHTGFEEWY---- 72
Query: 94 QNEYNFDHPDAFDFELLLPTL-QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEG 152
EY + +D E L ++L+ K+ +P Y+ T + E + + VI+ EG
Sbjct: 73 --EYYYLQ---WDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEG 127
Query: 153 ILAFHNPQVLELLDMKVFVDTDADVRLARRLK 184
+ + + V++D + R R +
Sbjct: 128 VF-LQRKEWRDFFHYMVYLDCPRETRFLRESE 158
>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 44.6 bits (106), Expect = 4e-05
Identities = 42/173 (24%), Positives = 63/173 (36%), Gaps = 29/173 (16%)
Query: 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH 101
+IG+ GG SGK+TVA KI+ L P ++ D R + E + +
Sbjct: 1 MMLIIGLTGGIGSGKSTVA-KILAELGFP---VIDADDVAREVVEPGGEALQEIA----- 51
Query: 102 PDAFDFELLLP--TLQRLKEGKKV-----DVPIYNFVTHS---RETRTKPMYGANVIIFE 151
+ F E+L L R K +KV + H E + + +
Sbjct: 52 -ERFGLEILDEDGGLDRRKLREKVFNDPEARLKLEKILHPLIRAEIKVVIDGARSPYVVL 110
Query: 152 GILAFHNPQVLELLDMKVFVDTDADVRLARRLKRD---------ILARGRDLE 195
I + D + V ++RL R +KRD LA RDLE
Sbjct: 111 EIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEARLASQRDLE 163
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 40.9 bits (96), Expect = 3e-04
Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 29/141 (20%)
Query: 46 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAF 105
I I G SGKTT+A ++ E L VL + A +N + +
Sbjct: 1 ILITGTPGSGKTTLAKELAERLGD-------------VLRDL----AKENGLVLELDEEI 43
Query: 106 DFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELL 165
E RL E K + + + + +I +G LA + + L
Sbjct: 44 TDESK-----RLDEDKLAKL-LDKLEKII-----EELAEGENVIIDGHLAELELERFKDL 92
Query: 166 DMKVFVDTDADVRLARRLKRD 186
+ V + D + L R KR
Sbjct: 93 -VFVVLRADPEELLERLKKRG 112
>gnl|CDD|215427 PLN02796, PLN02796, D-glycerate 3-kinase.
Length = 347
Score = 42.8 bits (101), Expect = 3e-04
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 36 KAGEQVEPFVIGICGGSASGKTTVATKIIESLNVPWVT--LLSMDSFYRVLNEEQHKKAA 93
K G+++ P VIGI GKTT+ ++ N LS+D FY + +Q K A
Sbjct: 93 KDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY-LTAADQAKLAE 151
Query: 94 QNEYNF-----DHPDAFDFELLLPTLQRL----KEGKKVDVPIYN 129
N N + + D L + TL+ L KEG K+ VP Y+
Sbjct: 152 ANPGNALLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYD 196
>gnl|CDD|178608 PLN03046, PLN03046, D-glycerate 3-kinase; Provisional.
Length = 460
Score = 40.3 bits (94), Expect = 0.002
Identities = 43/140 (30%), Positives = 58/140 (41%), Gaps = 20/140 (14%)
Query: 36 KAGEQVEPFVIGICGGSASGKTTVATKIIESLNVPW--VTLLSMDSFYRVLNEEQHKKAA 93
K G+ + P VIG GKTT+ + V LS+D FY + E Q +
Sbjct: 205 KDGDDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY-LTAEGQAELRE 263
Query: 94 QNEYNF---------DHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHS-RETRTKP-- 141
+N N H F E L + KEG K+ VP Y+ +S R R P
Sbjct: 264 RNPGNALLELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPST 323
Query: 142 ---MYGA-NVIIFEG-ILAF 156
+ G VI+FEG +L F
Sbjct: 324 WPEVEGPLEVILFEGWMLGF 343
>gnl|CDD|238980 cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis.
Length = 179
Score = 38.3 bits (90), Expect = 0.003
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 35/164 (21%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA 104
+IG+ GG SGK+TVA K+++ L +P ++ D E + +
Sbjct: 1 IIGLTGGIGSGKSTVA-KLLKELGIP---VIDADKIAH---EVYEPGGPALQAIVEA--- 50
Query: 105 FDFELLLP--TLQRLKEGKKV-----DVPIYNFVTHS----------RETRTKPMYGANV 147
F ++LL L R K G+ V +TH E R + + ++
Sbjct: 51 FGPDILLEDGELDRKKLGEIVFADPEKRKKLEAITHPLIRKEIEEQLAEARKEKVVVLDI 110
Query: 148 -IIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILAR 190
++FE L +L+D + VD ++++ R +KRD L+
Sbjct: 111 PLLFETGLE-------KLVDRVIVVDAPPEIQIERLMKRDGLSE 147
>gnl|CDD|206754 cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I
domain. Phosphoribosyl transferase (PRT) domain. The
type I PRTases are identified by a conserved PRPP
binding motif which features two adjacent acidic
residues surrounded by one or more hydrophobic residue.
PRTases catalyze the displacement of the
alpha-1'-pyrophosphate of
5-phosphoribosyl-alpha1-pyrpphosphate (PRPP) by a
nitrogen-containing nucleophile. The reaction products
are an alpha-1 substituted ribose-5'-phosphate and a
free pyrophosphate (PP). PRPP, an activated form of
ribose-5-phosphate, is a key metabolite connecting
nucleotide synthesis and salvage pathways. The type I
PRTase family includes a range of diverse phosphoribosyl
transferase enzymes and regulatory proteins of the
nucleotide synthesis and salvage pathways, including
adenine phosphoribosyltransferase EC:2.4.2.7.,
hypoxanthine-guanine-xanthine phosphoribosyltransferase,
hypoxanthine phosphoribosyltransferase EC:2.4.2.8.,
ribose-phosphate pyrophosphokinase EC:2.7.6.1.,
amidophosphoribosyltransferase EC:2.4.2.14., orotate
phosphoribosyltransferase EC:2.4.2.10., uracil
phosphoribosyltransferase EC:2.4.2.9., and
xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.
Length = 130
Score = 36.6 bits (85), Expect = 0.007
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 16/124 (12%)
Query: 207 PAFSTFIAPSMVHADIIV--PRGGEN---CVAIDLIVQHIHSQLQAVLLMDATVATGAAA 261
+ I ++ D++V RGG +A L + + +
Sbjct: 3 RLLAEEIREDLLEPDVVVGILRGGLPLAAALARALGLPLAFIRKERKGPGRTPSEPYGLE 62
Query: 262 MMAIRILLDHDVLLMDATVATGAAAMMAIRILLD-----------HDVPEGYIRRMWSVD 310
+ + VLL+D +ATG + AI +L + D PEG R + S
Sbjct: 63 LPLGGDVKGKRVLLVDDVIATGGTLLAAIELLKEAGAKVVGVAVLLDKPEGGARELASPG 122
Query: 311 VPIY 314
P+Y
Sbjct: 123 DPVY 126
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 37.1 bits (87), Expect = 0.010
Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 48/163 (29%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ-------HKKAAQNEY 97
+I I G SGKTTVA + E L + V S +R L +E+ +K A ++
Sbjct: 2 IITISGPPGSGKTTVARLLAEKLGLKHV---SAGEIFRELAKERGMSLEEFNKYAEED-- 56
Query: 98 NFDHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFH 157
D E+ +R E + + NV++ EG LA
Sbjct: 57 -----PEIDKEI----DRRQLE-----------IAEKED---------NVVL-EGRLAGW 86
Query: 158 NPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQ 200
+ D+K+++ +VR R +R+ G +E +++
Sbjct: 87 --MAKDYADLKIWLKAPLEVRAERIAERE----GISVEEALEE 123
>gnl|CDD|237728 PRK14490, PRK14490, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MobA;
Provisional.
Length = 369
Score = 37.0 bits (86), Expect = 0.023
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 43 PFVIGICGGSASGKTTVATKIIESL 67
PF I CG S SGKTT+ T ++ L
Sbjct: 5 PFEIAFCGYSGSGKTTLITALVRRL 29
>gnl|CDD|234620 PRK00081, coaE, dephospho-CoA kinase; Reviewed.
Length = 194
Score = 35.8 bits (84), Expect = 0.028
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVP 70
+IG+ GG SGK+TVA + L P
Sbjct: 2 MLIIGLTGGIGSGKSTVA-NLFAELGAP 28
>gnl|CDD|224677 COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis
protein [Coenzyme metabolism].
Length = 161
Score = 35.0 bits (81), Expect = 0.034
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 45 VIGICGGSASGKTTVATKIIESL 67
++GI G SGKTT+ K++ L
Sbjct: 4 ILGIVGYKNSGKTTLIEKLVRKL 26
>gnl|CDD|239390 cd03116, MobB, Molybdenum is an essential trace element in the
form of molybdenum cofactor (Moco) which is associated
with the metabolism of nitrogen, carbon and sulfur by
redox active enzymes. In E. coli, the synthesis of Moco
involves genes from several loci: moa, mob, mod, moe
and mog. The mob locus contains mobA and mobB genes.
MobB catalyzes the attachment of the guanine
dinucleotide to molybdopterin.
Length = 159
Score = 34.9 bits (81), Expect = 0.036
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 43 PFVIGICGGSASGKTTVATKIIESL 67
VIG G S SGKTT+ K+I +L
Sbjct: 1 MKVIGFVGYSGSGKTTLLEKLIPAL 25
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 35.0 bits (81), Expect = 0.044
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 37/157 (23%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQ-NEYNFDHPD 103
VI I G SGKTTVA ++ E L + V S + +R + E+ + + Y + P+
Sbjct: 2 VITISGLPGSGKTTVARELAEHLGLKLV---SAGTIFREMARERGMSLEEFSRYAEEDPE 58
Query: 104 AFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLE 163
D K++D R K + ++ EG LA V E
Sbjct: 59 -ID--------------KEID------------RRQKELAKEGNVVLEGRLAGW--IVRE 89
Query: 164 LLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQ 200
D+K+++ +VR R KR+ G D++ + +
Sbjct: 90 YADLKIWLKAPLEVRAERIAKRE----GIDVDEALAE 122
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 34.4 bits (80), Expect = 0.049
Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 43/159 (27%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWV--TLLSMDSFYRVLNEEQHKKAAQNEYNFDHP 102
+I I G + SGK+TVA + + L +P++ + EE K A P
Sbjct: 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIR--------TEEVGKLA---SEVAAIP 49
Query: 103 DAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVL 162
+ + L + L + V R+ T V
Sbjct: 50 E-VR-KALDERQRELAKKP-------GIVLEGRDIGTV--------------------VF 80
Query: 163 ELLDMKVFVDTDADVRLARRLKRDILAR-GRDLEGVIKQ 200
D+K+F+ +VR RR K+ G DLE ++ +
Sbjct: 81 PDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAE 119
>gnl|CDD|116541 pfam07931, CPT, Chloramphenicol phosphotransferase-like protein.
The members of this family are all similar to
chloramphenicol 3-O phosphotransferase (CPT) expressed
by Streptomyces venezuelae. Chloramphenicol (Cm) is a
metabolite produced by this bacterium that can inhibit
ribosomal peptidyl transferase activity and therefore
protein production. By transferring a phosphate group to
the C-3 hydroxyl group of Cm, CPT inactivates this
potentially lethal metabolite.
Length = 174
Score = 33.2 bits (76), Expect = 0.17
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPD 103
+I + GGS+SGK+++A + + L+ PW+ +D+F + ++ E++ P
Sbjct: 3 IILLNGGSSSGKSSIARALQDILDGPWLH-FGVDAFVEAMPPKRQDSGDGLEWSTVGPV 60
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 217
Score = 33.6 bits (77), Expect = 0.19
Identities = 39/169 (23%), Positives = 56/169 (33%), Gaps = 42/169 (24%)
Query: 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPD 103
+I I G S +GK+TVA + E L L + YR + A QN + D
Sbjct: 3 MIIAIDGPSGAGKSTVAKAVAEKLG---YAYLDSGAMYRAIA----LAALQNRVDLTSED 55
Query: 104 AFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPM------YGANVII-------- 149
A EL+ R N S RT+ + +
Sbjct: 56 AL-AELISHLDIRFIPTNGEVEVFLNGEDVSEAIRTQEVANAASKVAVFPKVREALLKRQ 114
Query: 150 -----FEGILA---------FHNPQVLELLDMKVFVDTDADVRLARRLK 184
+GI+A F N +V K+F+D + R RR K
Sbjct: 115 QALAKNDGIIADGRDIGTVVFPNAEV------KIFLDASVEERAKRRYK 157
>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 33.4 bits (77), Expect = 0.25
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--YRVLN 85
P +I I G +ASGKT +A + + L ++S+DS YR L+
Sbjct: 3 PKLIVIAGPTASGKTALAIALAKRLGGE---IISLDSMQVYRGLD 44
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 33.2 bits (76), Expect = 0.36
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 36 KAGEQVEPFVIGICGGSASGKTTVATKIIESLNVP 70
K GE IGI G S SGK+T+ TK+++ L P
Sbjct: 481 KPGE-----FIGIVGPSGSGKSTL-TKLLQRLYTP 509
>gnl|CDD|233448 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
adenylyltransferase, NadR type. The NadR protein of E.
coli and closely related bacteria is both enzyme and
regulatory protein. The first 60 or so amino acids,
N-terminal to the region covered by this model, is a
DNA-binding helix-turn-helix domain (pfam01381)
responsible for repressing the nadAB genes of NAD de
novo biosynthesis. The NadR homologs in Mycobacterium
tuberculosis, Haemophilus influenzae, and others appear
to lack the repressor domain. NadR has recently been
shown to act as an enzyme of the salvage pathway of NAD
biosynthesis, nicotinamide-nucleotide
adenylyltransferase; members of this family are presumed
to share this activity. E. coli NadR has also been found
to regulate the import of its substrate, nicotinamide
ribonucleotide, but it is not known if the other members
of this model share that activity.
Length = 325
Score = 32.9 bits (75), Expect = 0.37
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 41 VEPF---VIGICGGSASGKTTVATKIIESLNVPWV 72
V PF + I GG ++GK+T+ K+ N
Sbjct: 157 VRPFFVKTVAILGGESTGKSTLVNKLAAVFNTTSA 191
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 31.8 bits (73), Expect = 0.39
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 44 FVIGICGGSASGKTTVATKIIESLNVPWV 72
V+G+ G SGK+TV + E L P++
Sbjct: 3 VVMGVSG---SGKSTVGKALAERLGAPFI 28
>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins in
this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 32.0 bits (73), Expect = 0.41
Identities = 38/163 (23%), Positives = 59/163 (36%), Gaps = 48/163 (29%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNE-------EQHKKAAQNEY 97
+I I G SGKTTVA + E L++ L+S +R L E A +N
Sbjct: 2 IITISGPPGSGKTTVAKILAEKLSLK---LISAGDIFRELAAKMGLDLIEFLNYAEEN-- 56
Query: 98 NFDHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFH 157
P+ KK+D I+ + ++ E LA
Sbjct: 57 ----PEI---------------DKKIDRRIHEIALKEKN-----------VVLESRLA-- 84
Query: 158 NPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQ 200
V E D+K+++ +VR R KR+ G+ L +
Sbjct: 85 GWIVREYADVKIWLKAPLEVRARRIAKRE----GKSLTVARSE 123
>gnl|CDD|216591 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzyme occurs as
a bifunctional enzyme with fructose-2,6-bisphosphatase.
The bifunctional enzyme catalyzes both the synthesis and
degradation of fructose-2,6-bisphosphate, a potent
regulator of glycolysis. This enzyme contains a P-loop
motif.
Length = 219
Score = 32.3 bits (74), Expect = 0.48
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 24/110 (21%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEY----- 97
+I + G A GKT ++ K+ LN W + + + +V N +++++A Y
Sbjct: 10 KTLIVMVGLPARGKTYISKKLTRYLN--W---IGVPT--KVFNVGEYRRSAVKAYSDYEF 62
Query: 98 -NFDHPDAFDF--ELLLPTLQRLK------EGKKVDVPIYNFVTHSRETR 138
D+ + + L L + G V I++ +RE R
Sbjct: 63 FRPDNEEGMKIREQCALAALNDVLAYLNEESG---QVAIFDATNTTRERR 109
>gnl|CDD|184807 PRK14730, coaE, dephospho-CoA kinase; Provisional.
Length = 195
Score = 31.8 bits (73), Expect = 0.57
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 46 IGICGGSASGKTTVATKIIESLNVP 70
IG+ GG ASGK+TV + + +P
Sbjct: 4 IGLTGGIASGKSTVGNYLAQQKGIP 28
>gnl|CDD|238987 cd02029, PRK_like, Phosphoribulokinase-like (PRK-like) is a family
of proteins similar to phosphoribulokinase (PRK), the
enzyme involved in the Benson-Calvin cycle in
chloroplasts or photosynthetic prokaryotes. PRK
catalyzes the phosphorylation of D-ribulose 5-phosphate
to form D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 277
Score = 32.1 bits (73), Expect = 0.61
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 31/195 (15%)
Query: 45 VIGICGGSASGKTTVA---TKIIESLNV-PWVTLLSMDSFYRVLNEEQHKKAAQNE---Y 97
VI + G S +G TTV I + P V + DSF+R E A+
Sbjct: 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAV--VEGDSFHRYERMEMKMAIAEALDAGR 58
Query: 98 NFDH--PDAFDFELLLPTLQRLKEGKKVDVPIY-----NFVTHSRETRTKPMY-----GA 145
NF H P+A F+LL + E + Y ++E T +
Sbjct: 59 NFSHFGPEANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDT 118
Query: 146 NVIIFEGI---LAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIK--- 199
+++ +EG+ + V + D+ V V ++ +++ RD RG E V+
Sbjct: 119 DLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKIHRDTAERGYSAEAVMDTIL 178
Query: 200 ----QYVNMVKPAFS 210
Y+N + P FS
Sbjct: 179 RRMPDYINYICPQFS 193
>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 31.8 bits (73), Expect = 0.61
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVL 84
+I I G + SGK+TVA + E L L + YR +
Sbjct: 5 IIIAIDGPAGSGKSTVAKILAEKLGFH---YLDTGAMYRAV 42
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 29.6 bits (67), Expect = 0.70
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLS 76
+I I GGS SGK+TVA K+ E L V +L
Sbjct: 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32
Score = 26.5 bits (59), Expect = 7.6
Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 147 VIIFEGILAFHN---PQVLELLDMKVFVDTDA 175
++I EG+ A + ++ +L D+K+++D D
Sbjct: 34 IVILEGLYASYKSRDARIRDLADLKIYLDADL 65
>gnl|CDD|226986 COG4639, COG4639, Predicted kinase [General function prediction
only].
Length = 168
Score = 31.3 bits (71), Expect = 0.79
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 13/96 (13%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA 104
++ + G S SGK+T A + N +LS+D +L K+ +Q +
Sbjct: 4 LVVLRGASGSGKSTFAKE-----NFLQNYVLSLDDLRLLLGVSASKENSQK----NDELV 54
Query: 105 FDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTK 140
+D L QRL+ GK I + RE R K
Sbjct: 55 WD-ILYKQLEQRLRRGK---FTIIDATNLRREDRRK 86
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 31.5 bits (72), Expect = 1.2
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 46 IGICGGSASGKTTVATKIIESLNVPW 71
+ + GGS SGK+T+A K++ L PW
Sbjct: 508 VALVGGSGSGKSTIA-KLVAGLYQPW 532
>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 30.8 bits (70), Expect = 1.2
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPW--VTLLSMDSFYRVLNEEQHKK 91
+VI I G + SGKTT+A + E L + + V L D +L + K
Sbjct: 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDK 57
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 30.9 bits (70), Expect = 1.5
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 36 KAGEQVEPFVIGICGGSASGKTTVATKIIESLNVP 70
K GE V+GI G S SGK+T+ TK+I+ VP
Sbjct: 26 KPGE-----VVGIVGRSGSGKSTL-TKLIQRFYVP 54
>gnl|CDD|132852 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like phospholipase.
Patatin is a storage protein of the potato tuber that
shows Phospholipase A2 activity (PLA2; EC 3.1.1.4).
Patatin catalyzes the nonspecific hydrolysis of
phospholipids, glycolipids, sulfolipids, and mono- and
diacylglycerols, thereby showing lipid acyl hydrolase
activity. The active site includes an oxyanion hole with
a conserved GGxR motif; it is found in almost all the
members of this family. The catalytic dyad is formed by
a serine and an aspartate. Patatin belongs to the
alpha-beta hydrolase family which is identified by a
characteristic nucleophile elbow with a consensus
sequence of Sm-X-Nu-Sm (Sm = small residue, X = any
residue and Nu = nucleophile). Members of this family
have been found also in vertebrates. This family
includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9
(iPLA2-beta) like phospholipases from human as well as
the Pat17 isozyme from Solanum cardiophyllum.
Length = 288
Score = 30.7 bits (70), Expect = 1.9
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 187 ILARGRDLEGVIKQYVNMVKPAFSTFIAPSMV 218
LA G V+K Y + FS A
Sbjct: 50 GLALGYSPRQVLKLYEEVGLKVFSKSSAGGGA 81
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 29.6 bits (66), Expect = 2.0
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVLNEEQHKK 91
VI I G SGKTT+A + L P V + + + ++
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLI 52
>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces
scores in the range of 0-25 bits against adenylate,
guanylate, uridine, and thymidylate kinases
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 188
Score = 30.0 bits (68), Expect = 2.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVP 70
+IG+ GG SGK+TVA + + + P
Sbjct: 1 IIGLTGGIGSGKSTVANYLADKYHFP 26
>gnl|CDD|226463 COG3954, PrkB, Phosphoribulokinase [Energy production and
conversion].
Length = 289
Score = 30.6 bits (69), Expect = 2.1
Identities = 50/197 (25%), Positives = 77/197 (39%), Gaps = 35/197 (17%)
Query: 45 VIGICGGSASGKTTVA---TKIIESLNVPWVTLLSMDSFYRVLNEEQH---KKAAQNEYN 98
VI + G S +G TT + KI LN+ + DSF+R E +KA +
Sbjct: 7 VIAVTGSSGAGTTTTSLAFRKIFAQLNIH-AAEVEGDSFHRYTRPEMDMAIRKARDAGRH 65
Query: 99 FDH--PDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYG-----------A 145
+ P+A DF LL T + K Y T+ + G
Sbjct: 66 ISYFGPEANDFGLLEQTFIEYGQSGKGRSRKY-LHTYDEAVPWNQVPGTFTPWQPLPEPT 124
Query: 146 NVIIFEG-----ILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGV--- 197
+V+ +EG + HN V + +D+ V V ++ ++L RD RG E V
Sbjct: 125 DVLFYEGLHGGVVTPQHN--VAQHVDLLVGVVPIVNLEWIQKLIRDTSERGHSREAVMDS 182
Query: 198 ----IKQYVNMVKPAFS 210
+ Y+N + P FS
Sbjct: 183 VVRSMDDYINYITPQFS 199
>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield
adenosine diphosphates (ADP). This enzyme is required
for the biosynthesis of ADP and is essential for
homeostasis of adenosine phosphates.
Length = 194
Score = 29.9 bits (68), Expect = 2.1
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 48 ICGGSASGKTTVATKIIESLNVP 70
+ G SGK T A ++ + +P
Sbjct: 4 LLGPPGSGKGTQAERLAKKYGLP 26
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 30.1 bits (68), Expect = 2.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 46 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDS 79
I I G S SGK+T+A K+ + N P +L +D+
Sbjct: 3 IAIIGYSGSGKSTLARKLSQHYNCP---VLHLDT 33
>gnl|CDD|238139 cd00227, CPT, Chloramphenicol (Cm) phosphotransferase (CPT).
Cm-inactivating enzyme; modifies the primary (C-3)
hydroxyl of the antibiotic. Related structurally to
shikimate kinase II.
Length = 175
Score = 29.8 bits (67), Expect = 2.2
Identities = 33/141 (23%), Positives = 49/141 (34%), Gaps = 23/141 (16%)
Query: 50 GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFEL 109
GGS++GK+++A + L PW+ +DSF L + Q+ D
Sbjct: 9 GGSSAGKSSIARALQSVLAEPWLH-FGVDSFIEALPLKC-----QDAEGGIEFDGDGGVS 62
Query: 110 LLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQ----VLELL 165
P + L+ V +R GANVI + L Q L
Sbjct: 63 PGPEFRLLEGAWYEAV-----AAMARA-------GANVIADDVFLGRAALQDCWRSFVGL 110
Query: 166 DMK-VFVDTDADVRLARRLKR 185
D+ V V +V R R
Sbjct: 111 DVLWVGVRCPGEVAEGRETAR 131
>gnl|CDD|235684 PRK06052, PRK06052,
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase; Provisional.
Length = 344
Score = 30.5 bits (69), Expect = 2.3
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 37/115 (32%)
Query: 90 KKAAQNEYNF-------DHPD-------AFDFELLLPTLQ---RLKEGKKVDVPIYNFVT 132
+ A ++ NF D P F + ++ L + DV I+
Sbjct: 149 ENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISALTVASTYARKQGADVEIH---L 205
Query: 133 HSRETRTKPMY--------GANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRL 179
HS P+Y G NVI G+ + P L+L+D KV DTD +R+
Sbjct: 206 HS------PLYYELICETPGINVI---GVESAATPSYLDLIDKKVLEDTDTFLRV 251
>gnl|CDD|232857 TIGR00176, mobB, molybdopterin-guanine dinucleotide biosynthesis
protein MobB. This molybdenum cofactor biosynthesis
enzyme is similar to the urease accessory protein UreG
and to the hydrogenase accessory protein HypB, both GTP
hydrolases involved in loading nickel into the
metallocenters of their respective target enzymes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Molybdopterin].
Length = 155
Score = 29.7 bits (67), Expect = 2.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 45 VIGICGGSASGKTTVATKIIESL 67
V+ I G SGKTT+ +++++L
Sbjct: 1 VLQIVGPKNSGKTTLIERLVKAL 23
>gnl|CDD|225713 COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism
[Coenzyme metabolism].
Length = 187
Score = 29.7 bits (67), Expect = 2.4
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 39 EQVEPF---VIGICGGSASGKTTVATKIIESLNVP 70
+V PF + I GG +SGK+T+ K+ N
Sbjct: 1 REVRPFFVKTVAILGGESSGKSTLVNKLANIFNTT 35
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 30.6 bits (70), Expect = 2.5
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 36 KAGEQVEPFVIGICGGSASGKTTVATKIIESLNVP 70
+ GE +G+ G S SGK+T+A +I+ L P
Sbjct: 315 REGE-----TLGLVGESGSGKSTLA-RILAGLLPP 343
>gnl|CDD|216308 pfam01121, CoaE, Dephospho-CoA kinase. This family catalyzes the
phosphorylation of the 3'-hydroxyl group of
dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24.
This enzyme uses ATP in its reaction.
Length = 179
Score = 29.6 bits (67), Expect = 2.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 45 VIGICGGSASGKTTVAT 61
++G+ GG SGK+TVA
Sbjct: 2 IVGLTGGIGSGKSTVAN 18
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 30.3 bits (69), Expect = 2.9
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 36 KAGEQVEPFVIGICGGSASGKTTVATKIIESLNVPW 71
GE + I G S SGK+T+ K++ L P
Sbjct: 497 PPGE-----KVAIVGRSGSGKSTLL-KLLLGLYKPQ 526
>gnl|CDD|226412 COG3896, COG3896, Chloramphenicol 3-O-phosphotransferase [Defense
mechanisms].
Length = 205
Score = 29.9 bits (67), Expect = 2.9
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 50 GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ 88
GGS++GK+++A + PW+ + +D F+ L EQ
Sbjct: 30 GGSSAGKSSIALAFQDLAAEPWMH-IGIDLFWEALPPEQ 67
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate
transferase; Reviewed.
Length = 307
Score = 29.7 bits (68), Expect = 3.3
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVLN 85
P VI I G +ASGKT +A ++ + LN ++S DS YR ++
Sbjct: 4 PKVIVIVGPTASGKTALAIELAKRLN---GEIISADSMQVYRGMD 45
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 29.1 bits (66), Expect = 3.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTL 74
I I G GKTT+ K+IE L V +
Sbjct: 1 RIFITGPPGVGKTTLVKKVIELLKSEGVKV 30
>gnl|CDD|219519 pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after
Kidins220/ARMS and PifA) family of predicted NTPases are
sporadically distributed across a wide phylogenetic
range in bacteria and in animals. Many of the
prokaryotic KAP NTPases are encoded in plasmids and tend
to undergo disruption to form pseudogenes. A unique
feature of all eukaryotic and certain bacterial KAP
NTPases is the presence of two or four transmembrane
helices inserted into the P-loop NTPase domain. These
transmembrane helices anchor KAP NTPases in the membrane
such that the P-loop domain is located on the
intracellular side.
Length = 301
Score = 29.7 bits (67), Expect = 4.2
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 22/121 (18%)
Query: 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH 101
FVIG+ G SGKT+ + + L E+ + + F
Sbjct: 19 PGFVIGLYGAWGSGKTSFLNLLEDELK---------------EFPEEFHIVYFDPWLFSG 63
Query: 102 PDAFDFEL---LLPTLQRLKEGKKVDVPI-YNFVTHSRETRTKPMYG---ANVIIFEGIL 154
D L L L+ + I + + +G A +
Sbjct: 64 QDDAVASLLAALADALEEEYSALATKLLIGKKLLALVIGAKIGGNFGVGTALALTGLVAS 123
Query: 155 A 155
Sbjct: 124 V 124
>gnl|CDD|203837 pfam08000, DUF1696, Protein of unknown function (DUF1696). This
family contains many bacterial hypothetical proteins.
The structures of PDB:3hsa, and PDB:3dcx, show
similarities to the PH or pleckstrin homology domain.
First evidence of PH-like domains in bacteria suggests
role in cell envelope stress response.
Length = 123
Score = 28.3 bits (64), Expect = 4.4
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 442 RDEFIFYSKRLIRLVIEFALSLLPFKVSIHSIAY 475
RD +F +KRLI + + KV HSI Y
Sbjct: 40 RDLIVFTNKRLILVDKQGITGK---KVEYHSIPY 70
>gnl|CDD|107335 cd06340, PBP1_ABC_ligand_binding_like_6, Type I periplasmic
ligand-binding domain of uncharacterized ABC (ATPase
Binding Cassette)-type active transport systems that are
predicted to be involved in transport of amino acids,
peptides, or inorganic ions. This subgroup includes the
type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type
active transport systems that are predicted to be
involved in transport of amino acids, peptides, or
inorganic ions. This subgroup has high sequence
similarity to members of the family of hydrophobic amino
acid transporters (HAAT), such as
leucine-isoleucine-valine-binding protein (LIVBP);
however their ligand specificity has not been determined
experimentally.
Length = 347
Score = 29.6 bits (67), Expect = 4.7
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSM 77
V+ + G S T A+++ E VP+V ++
Sbjct: 71 VVALVGAYQSAVTLAASQVAERYGVPFVVDGAV 103
>gnl|CDD|237538 PRK13876, PRK13876, conjugal transfer coupling protein TraG;
Provisional.
Length = 663
Score = 29.5 bits (67), Expect = 4.8
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 380 IKGLH---TAGNRTRVSRVLLRGFKLRPTLAQSYAGQPLPE 417
IKG + TAG R R RVLL PT A+S A PL E
Sbjct: 178 IKGENWQLTAGFRARFGRVLL----FDPTNAKSAAYNPLLE 214
>gnl|CDD|224533 COG1618, COG1618, Predicted nucleotide kinase [Nucleotide
transport and metabolism].
Length = 179
Score = 28.8 bits (65), Expect = 5.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 46 IGICGGSASGKTTVATKIIESL 67
I I G GKTT+ KI E L
Sbjct: 8 IFITGRPGVGKTTLVLKIAEKL 29
>gnl|CDD|173195 PRK14733, coaE, dephospho-CoA kinase; Provisional.
Length = 204
Score = 28.8 bits (64), Expect = 5.7
Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 13/153 (8%)
Query: 41 VEPFVIGICGGSASGKTTVATKII-ESLNVPWVTLLSMDSFYRVLNEEQH--KKAAQ--- 94
+ + IGI GG ASGK+T AT+I+ E LN + ++ D+ R + ++ KK A+
Sbjct: 4 INTYPIGITGGIASGKST-ATRILKEKLN---LNVVCADTISREITKKPSVIKKIAEKFG 59
Query: 95 NEYNFDHPDAFDFELLLPTLQRLKEGKK-VDVPIYNFVTHSRETRTKPMYGANVIIFEGI 153
+E + + +L + KE KK ++ ++ + + + K I+ +
Sbjct: 60 DEIVMN--KQINRAMLRAIITESKEAKKWLEDYLHPVINKEIKKQVKESDTVMTIVDIPL 117
Query: 154 LAFHNPQVLELLDMKVFVDTDADVRLARRLKRD 186
L +N + + L + + D + R+ R ++RD
Sbjct: 118 LGPYNFRHYDYLKKVIVIKADLETRIRRLMERD 150
>gnl|CDD|237730 PRK14493, PRK14493, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MoaE;
Provisional.
Length = 274
Score = 29.2 bits (66), Expect = 5.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 45 VIGICGGSASGKTTVATKIIESL 67
V+ I G A+GKTT+ ++++ L
Sbjct: 3 VLSIVGYKATGKTTLVERLVDRL 25
>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 28.9 bits (66), Expect = 5.9
Identities = 39/182 (21%), Positives = 61/182 (33%), Gaps = 49/182 (26%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVLNEEQHKKAAQNEYNFD 100
VI I G + SGK TVA + + L + L D+ YR + A ++ + +
Sbjct: 4 AIVIAIDGPAGSGKGTVAKILAKKLG--FHYL---DTGAMYRAVA----LAALRHGVDLE 54
Query: 101 HPDAFDFELLLPTLQ-RLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNP 159
+A L L + N + E RT G + A P
Sbjct: 55 DEEAL--VALAAHLDISFESDPGGQRVFLNGEDVTDEIRT-EEVGNAASK---VAAI--P 106
Query: 160 QVLELL------------------DM----------KVFVDTDADVRLARRLKRDILARG 191
+V E L D+ K+F+ A+ R RR K ++ A+G
Sbjct: 107 EVREALVERQRAFAREPGLVMDGRDIGTVVFPDAELKIFLTASAEERAERRYK-ELQAKG 165
Query: 192 RD 193
Sbjct: 166 IS 167
>gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional.
Length = 208
Score = 28.5 bits (64), Expect = 6.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 43 PFVIGICGGSASGKTTV 59
PF++G+ GG SGK+TV
Sbjct: 5 PFLVGVTGGIGSGKSTV 21
>gnl|CDD|169400 PRK08356, PRK08356, hypothetical protein; Provisional.
Length = 195
Score = 28.6 bits (64), Expect = 6.8
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 41 VEPFVIGICGGSASGKTTVATKIIESL 67
VE ++G+ G A+GKTTVA K E
Sbjct: 3 VEKMIVGVVGKIAAGKTTVA-KFFEEK 28
>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III
[Energy production and conversion].
Length = 366
Score = 29.1 bits (66), Expect = 6.8
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 497 VIPGIGNFGDRYFGTEPTITVTGGSIKATAGGSCLSRVE 535
VI G+ G T P VTG K +A G R +
Sbjct: 282 VIIGVAGAGQE-ISTRPFQLVTGRVWKGSAFGGARPRSD 319
>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK)
catalyzes the phosphorylation of adenosine
5'-phosphosulfate to form 3'-phosphoadenosine
5'-phosphosulfate (PAPS). The end-product PAPS is a
biologically "activated" sulfate form important for the
assimilation of inorganic sulfate.
Length = 149
Score = 28.2 bits (64), Expect = 6.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 45 VIGICGGSASGKTTVATKIIESLN 68
VI + G S SGK+T+A + E L
Sbjct: 1 VIWLTGLSGSGKSTIARALEEKLF 24
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 27.7 bits (62), Expect = 7.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 44 FVIGICGGSASGKTTVATKIIESL 67
++ + G SGKTT+ K++ L
Sbjct: 1 PIVLVVGPKDSGKTTLIRKLLNYL 24
>gnl|CDD|172360 PRK13833, PRK13833, conjugal transfer protein TrbB; Provisional.
Length = 323
Score = 28.6 bits (64), Expect = 7.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 46 IGICGGSASGKTTVATKII 64
I I GG+ SGKTT+A +I
Sbjct: 147 IVISGGTGSGKTTLANAVI 165
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 28.0 bits (63), Expect = 7.6
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 14/58 (24%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY------RVLNEEQHKKAAQNE 96
+IG GGS GK+T+A ++ E LN+P + +D+ + V EEQ QNE
Sbjct: 6 LIG-SGGS--GKSTLARQLGEKLNIP---VHHLDALFWKPNWEGVPKEEQITV--QNE 55
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 27.9 bits (63), Expect = 8.1
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 43 PFVIGICGGSASGKTTVATKIIE 65
V+ G S GK+T+ +++E
Sbjct: 1 LIVL--SGPSGVGKSTLLKRLLE 21
>gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 28.9 bits (65), Expect = 8.4
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVL 84
VI I G +ASGK TVA ++ E+L + L S + YR+
Sbjct: 444 VICIDGPTASGKGTVAARVAEALG--YHYLDS-GALYRLT 480
>gnl|CDD|236151 PRK08099, PRK08099, bifunctional DNA-binding transcriptional
repressor/ NMN adenylyltransferase; Provisional.
Length = 399
Score = 28.5 bits (64), Expect = 8.9
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 40 QVEPF---VIGICGGSASGKTTVATKI 63
+V PF + I GG +SGK+T+ K+
Sbjct: 213 EVRPFFVRTVAILGGESSGKSTLVNKL 239
>gnl|CDD|225595 COG3053, CitC, Citrate lyase synthetase [Energy production and
conversion].
Length = 352
Score = 28.5 bits (64), Expect = 9.0
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 22/102 (21%)
Query: 431 LHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKVSIHS-----IAYA-FPN----- 479
LH F+ +D+S Y RL LV + + LP V++HS I+ A FP
Sbjct: 175 LHLFVVKEDSSL---FPYEDRL-DLVKK-GTADLP-NVTVHSGSDYIISRATFPAYFIKE 228
Query: 480 ---VKIVTSAVDPEINENFYVIPGIGNFGDRYFGTEPTITVT 518
V + +D +I Y+ P +G R+ GTEP VT
Sbjct: 229 QSVVNDSQTEIDLKIFRK-YIAPALG-ITHRFVGTEPFCRVT 268
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain.
Length = 285
Score = 28.4 bits (64), Expect = 9.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 42 EPFVIGICGGSASGKTTVATKIIESLNV 69
V+GI G GKTT+A +I +V
Sbjct: 18 NLGVVGIVGMGGVGKTTLAKQIYNDDSV 45
>gnl|CDD|237808 PRK14734, coaE, dephospho-CoA kinase; Provisional.
Length = 200
Score = 28.3 bits (63), Expect = 9.7
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 29/168 (17%)
Query: 44 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPD 103
IG+ GG SGK+TVA + ++ ++ D R + E A+ +
Sbjct: 2 LRIGLTGGIGSGKSTVADLLSS---EGFL-IVDADQVARDIVEPGQPALAE------LAE 51
Query: 104 AFDFELLLP--TLQRLKEGKKVDVP-----IYNFVTHSR-ETRTKPMY------GANVII 149
AF ++L P TL R K + N +TH R T + GA V +
Sbjct: 52 AFGDDILNPDGTLDRAGLAAKAFASPEQTALLNAITHPRIAEETARRFNEARAQGAKVAV 111
Query: 150 FEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGV 197
++ L +D+ V VD D + R+ RRL + RG D +
Sbjct: 112 YDMPLLVEKGLD-RKMDLVVVVDVDVEERV-RRL---VEKRGLDEDDA 154
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain
only a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 27.7 bits (62), Expect = 9.8
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHK 90
+I + G SGK+T A +++ L V +LS D+ + L +
Sbjct: 1 LILMVGLPGSGKSTFARRLLREL--GAV-VLSSDTLRKRLRGDGPP 43
>gnl|CDD|237475 PRK13695, PRK13695, putative NTPase; Provisional.
Length = 174
Score = 28.0 bits (63), Expect = 9.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 46 IGICGGSASGKTTVATKIIESL 67
IGI G GKTT+ KI E L
Sbjct: 3 IGITGPPGVGKTTLVLKIAELL 24
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.397
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,358,687
Number of extensions: 2922769
Number of successful extensions: 3390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3343
Number of HSP's successfully gapped: 147
Length of query: 542
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 440
Effective length of database: 6,413,494
Effective search space: 2821937360
Effective search space used: 2821937360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.7 bits)