RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9618
(542 letters)
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 320 bits (823), Expect = e-108
Identities = 94/205 (45%), Positives = 131/205 (63%), Gaps = 3/205 (1%)
Query: 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH 101
+PFVIGI GG+ASGKTT+A + +L V LL MD +Y+ L + N+DH
Sbjct: 5 KPFVIGIAGGTASGKTTLAQALARTLG-ERVALLPMDHYYKDLGHLP--LEERLRVNYDH 61
Query: 102 PDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQV 161
PDAFD L L Q L G V++P+Y+F ++R R P+ A V+I EGIL + ++
Sbjct: 62 PDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKEL 121
Query: 162 LELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHAD 221
+L+D+KVFVD DAD R RRLKRD+L RGR LEGV+ QY+ VKP F+ P+ +AD
Sbjct: 122 RDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYAD 181
Query: 222 IIVPRGGENCVAIDLIVQHIHSQLQ 246
+IVPRGG+N VA++++ ++L
Sbjct: 182 VIVPRGGQNPVALEMLAAKALARLA 206
Score = 64.6 bits (158), Expect = 4e-12
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 308 SVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLE 349
V++P+Y+F ++R R P+ A V+I EGIL + ++ +
Sbjct: 82 PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRD 123
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 308 bits (791), Expect = e-103
Identities = 117/239 (48%), Positives = 160/239 (66%), Gaps = 14/239 (5%)
Query: 17 ILQSKTRTIYTAGRPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIESLNV------- 69
+ +T+ +P EPF+IG+ GG+ASGK++V KI++ L
Sbjct: 3 MAGDSEQTLQNHQQPNG-------GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQ 55
Query: 70 PWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVDVPIYN 129
V +LS DSFYRVL EQ KA + ++NFDHPDAFD EL+L TL+ + EGK V +P+Y+
Sbjct: 56 KQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYD 115
Query: 130 FVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILA 189
FV+HSR+ T +Y A+V++FEGILAF++ +V +L MK+FVDTDAD RL+RR+ RDI
Sbjct: 116 FVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISE 175
Query: 190 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQAV 248
RGRDLE ++ QY+ VKPAF F P+ +AD+I+PRG +N VAI+LIVQHI L
Sbjct: 176 RGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGG 234
Score = 52.1 bits (125), Expect = 1e-07
Identities = 21/45 (46%), Positives = 34/45 (75%)
Query: 303 IRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQV 347
I +V +P+Y+FV+HSR+ T +Y A+V++FEGILAF++ +V
Sbjct: 103 ITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEV 147
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 298 bits (765), Expect = 6e-99
Identities = 110/219 (50%), Positives = 152/219 (69%), Gaps = 8/219 (3%)
Query: 35 NKAGEQVEPFVIGICGGSASGKTTVATKIIESLNVPW-------VTLLSMDSFYRVLNEE 87
N + + PF+IG+ GG+ASGK+TV KI+E L V +LS D FY+VL E
Sbjct: 17 NLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAE 76
Query: 88 QHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANV 147
Q KA + +YNFDHPDAFD +L+ TL+ + EGK V+VP Y+FVTHSR T +Y A+V
Sbjct: 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADV 136
Query: 148 IIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKP 207
++FEGIL F++ ++ ++ +++FVDTD+DVRL+RR+ RD+ RGRDLE ++ QY VKP
Sbjct: 137 VLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKP 195
Query: 208 AFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQ 246
AF F P+ +AD+I+PRG +N VAI+LIVQHI L
Sbjct: 196 AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILN 234
Score = 50.5 bits (121), Expect = 3e-07
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 308 SVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQV 347
+V+VP Y+FVTHSR T +Y A+V++FEGIL F++ ++
Sbjct: 111 TVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEI 150
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 228 bits (584), Expect = 2e-72
Identities = 42/192 (21%), Positives = 83/192 (43%), Gaps = 12/192 (6%)
Query: 37 AGEQVEPFVIGICGGSASGKTTVATKIIESLNVPW--VTLLSMDSFYRVLNEEQHKKAAQ 94
A + V+GI G S SGKTT+A ++ ++L V + MD +
Sbjct: 16 AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV--ERAKRYHTGN 73
Query: 95 NEYNFDHPDAFDFELLLPTL-QRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGI 153
E+ + +D E L L ++LK ++ +P Y+ T + RT + +++I+ EG+
Sbjct: 74 EEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGV 133
Query: 154 LAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFI 213
+ D V++D ++R AR + ++++ I +Y + +
Sbjct: 134 F-LQRKEWRPFFDFVVYLDCPREIRFARENDQ----VKQNIQKFINRYWK-AEDYYLETE 187
Query: 214 APSMVHADIIVP 225
P + AD++
Sbjct: 188 EP-IKRADVVFD 198
Score = 54.3 bits (131), Expect = 1e-08
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 308 SVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFH 343
+ +P Y+ T + RT + +++I+ EG+
Sbjct: 102 QLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQR 137
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 210 bits (535), Expect = 3e-65
Identities = 37/208 (17%), Positives = 76/208 (36%), Gaps = 20/208 (9%)
Query: 42 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH 101
+ F+IGI G + SGKTT+A + + L P +++S D F++ E + + +D
Sbjct: 20 KTFIIGISGVTNSGKTTLAKNLQKHL--PNCSVISQDDFFK--PESEIETDKNGFLQYDV 75
Query: 102 PDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQV 161
+A + E ++ + E + V + + ++I EG L F+ +
Sbjct: 76 LEALNMEKMMSAISCWMESARHSVVSTDQESAEE---------IPILIIEGFLLFNYKPL 126
Query: 162 LELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHAD 221
+ + F+ + RR R + V P + +
Sbjct: 127 DTIWNRSYFLTIPYEECKRRRSTRV-----YQPPDSPGYFDGHVWPMYLKYRQEMQDITW 181
Query: 222 IIVPRGGENCVAIDLIVQHIHSQLQAVL 249
+V G + + + ++ L L
Sbjct: 182 EVVYLDGTK--SEEDLFLQVYEDLIQEL 207
Score = 42.1 bits (99), Expect = 1e-04
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 288 MAIRILLDHDVPEG--YIRRMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNP 345
L +DV E + M ++ + + T + ++I EG L F+
Sbjct: 65 TDKNGFLQYDVLEALNMEKMMSAISCWMESARHSVVSTDQESAEEIPILIIEGFLLFNYK 124
Query: 346 QVLE 349
+
Sbjct: 125 PLDT 128
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 189 bits (482), Expect = 2e-56
Identities = 37/233 (15%), Positives = 80/233 (34%), Gaps = 24/233 (10%)
Query: 41 VEPFVIGICGGSASGKTTVA---TKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNE- 96
+ +I + G S +G +TV +I V V + D+F+R + + +
Sbjct: 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAV-SIEGDAFHRFNRADMKAELDRRYA 61
Query: 97 -----YNFDHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPM--------- 142
++ +A + + L + E + Y
Sbjct: 62 AGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDF 121
Query: 143 -YGANVIIFEGILAF---HNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVI 198
++++ +EG+ + L D+K+ V ++ +++ RD RG E V
Sbjct: 122 DSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVT 181
Query: 199 KQYVNMVKPAFSTFIAPSMVHADIIVPRGGENCVAIDLIVQHIHSQLQAVLLM 251
+ A+ I P DI R + I + I + ++V+++
Sbjct: 182 DVILR-RMHAYVHCIVPQFSQTDINFQRVPVVDTSNPFIARWIPTADESVVVI 233
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
nucleotide binding binding, cytoplasm,
nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A*
3avo_A* 3avq_A*
Length = 312
Score = 185 bits (471), Expect = 2e-54
Identities = 41/219 (18%), Positives = 81/219 (36%), Gaps = 31/219 (14%)
Query: 42 EPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYRVLNEEQHKKAAQNEY 97
PF+IG+ G A GK+T A + L P V L++ D F E Q + +
Sbjct: 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLM---H 145
Query: 98 NFDHPDAFDFELLLPTLQRLKEGKK-VDVPIYNFVTHSR-ETRTKPMYGANVIIFEGILA 155
P++++ L+ + +K G P+Y+ + + + + +++I EG+
Sbjct: 146 RKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNV 205
Query: 156 FHNPQ---VLELLDMKVFVDTDADVRLARRLKRDILAR---GRDLEGVIKQYVNM----- 204
V +L D ++VD + + R + R D E Y
Sbjct: 206 LQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQA 265
Query: 205 -----------VKPAFSTFIAPSMVHADIIVPRGGENCV 232
+P I P+ A +++ + ++ +
Sbjct: 266 VVAAREIWRTINRPNLVENILPTRPRATLVLRKDADHSI 304
Score = 33.0 bits (75), Expect = 0.20
Identities = 5/39 (12%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 309 VDVPIYNFVTHSR-ETRTKPMYGANVIIFEGILAFHNPQ 346
P+Y+ + + + + +++I EG+
Sbjct: 172 ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGP 210
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 177 bits (451), Expect = 1e-51
Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 38/234 (16%)
Query: 34 YNKAGEQVEPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYRVLNEEQH 89
+ Q P++I I G A GK+T A + L+ V L++ D F Q
Sbjct: 71 FLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH---PNQV 127
Query: 90 KKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK-VDVPIYNFVTHSR-ETRTKPMYGANV 147
K P+++D L+ + LK G V P+Y+ + + K + ++
Sbjct: 128 LKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDI 187
Query: 148 IIFEGILAFHNPQ----------VLELLDMKVFVDTDADVRLARRLKRDILARG---RDL 194
+I EG+ + V + +D ++VD D+ + R + R D
Sbjct: 188 LILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDP 247
Query: 195 EGVIKQYVNM----------------VKPAFSTFIAPSMVHADIIVPRGGENCV 232
+ Y + I P+ A +I+ + + V
Sbjct: 248 DSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANHAV 301
Score = 32.6 bits (74), Expect = 0.29
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 308 SVDVPIYNFVTHSR-ETRTKPMYGANVIIFEGILAFHNPQVLERG 351
+V P+Y+ + + K + +++I EG+ +
Sbjct: 161 NVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHD 205
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 170 bits (433), Expect = 3e-50
Identities = 32/192 (16%), Positives = 71/192 (36%), Gaps = 12/192 (6%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFD 100
++ + G SGK+T++ + +L+ ++ MD F+ + +
Sbjct: 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGL---LPRKG 78
Query: 101 HPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGAN-VIIFEGILAFHN- 158
P+ FDFE LK ++V P+++ + V I EG +
Sbjct: 79 APETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDA 138
Query: 159 ---PQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAP 215
+ + D+ + ++ AR ++R L G + + + + + I
Sbjct: 139 PGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGLNHDAAVARAQGNDLAN-ARAIEA 196
Query: 216 SMVHADIIVPRG 227
+ + AD+ P+
Sbjct: 197 ARLPADLTWPQA 208
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 172 bits (438), Expect = 1e-49
Identities = 41/235 (17%), Positives = 85/235 (36%), Gaps = 38/235 (16%)
Query: 33 WYNKAGEQVEPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYRVLNEEQ 88
+ E P++IGI G A GK+T + + L+ P V +++ D F + +
Sbjct: 82 QFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLE 141
Query: 89 HKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK-VDVPIYNFVTHSR-ETRTKPMYGAN 146
+ + P+++D LL L +K G++ V +P+Y+ + + + + +
Sbjct: 142 KQGLMKR---KGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPD 198
Query: 147 VIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARG-------------RD 193
++I EG+ L ++VFV D L + ++ + +D
Sbjct: 199 IVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKD 258
Query: 194 LEGVIKQYVNM----------------VKPAFSTFIAPSMVHADIIVPRGGENCV 232
M K I P A +I+ + ++ +
Sbjct: 259 PHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADHSI 313
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage,
oligomerization, structural genomics, RI structural
genomics/proteomics initiative; 2.10A {Thermus
thermophilus} SCOP: c.61.1.1
Length = 208
Score = 81.5 bits (201), Expect = 7e-18
Identities = 16/43 (37%), Positives = 31/43 (72%)
Query: 470 IHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512
+ IA P+ ++V +A+D +N++ Y++PG+G+ GDR +GT+
Sbjct: 166 LERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208
Score = 67.6 bits (165), Expect = 3e-13
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 422 LPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFK 467
L + P ++ +R+K T +F ++ + L+ A+ L +
Sbjct: 5 LVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELE 50
Score = 30.2 bits (68), Expect = 1.4
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 270 DHDVLLMDATVATGAAAMMAIRILLDHDVPEGYI 303
+ L+D +ATG +A +A+ +L + +
Sbjct: 123 ERRAFLLDPMLATGGSASLALSLLKERGATGVKL 156
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A
{Aquifex aeolicus}
Length = 208
Score = 81.1 bits (200), Expect = 9e-18
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 461 LSLLPFKVSIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512
+ + + I F V+I VD +N+ Y+IPG+G+ GDR +
Sbjct: 155 VHAIAAPEGLKRIEEKFKEVEIFVGNVDERLNDKGYIIPGLGDIGDRLYAVS 206
Score = 65.7 bits (160), Expect = 2e-12
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 422 LPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFK 467
P IK R +DTS ++ K L +++ AL + +
Sbjct: 4 ELSHPLIKHKVNTARIQDTSAEKLRKTLKELGFMLVYEALKDILLE 49
Score = 28.0 bits (62), Expect = 6.9
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 270 DHDVLLMDATVATGAAAMMAIRILLDHDVPEGYI 303
V+++D +ATG +A+R +L H +
Sbjct: 121 GKIVVILDPMLATGGTLEVALREILKHSPLKVKS 154
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase;
1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D
1jlr_A* 1jls_B* 1upf_D 1upu_D*
Length = 243
Score = 80.4 bits (198), Expect = 3e-17
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 459 FALSLLPFKVSIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGT 511
+++L I + +P V++VT+AVD +N +Y++PGIG+FGDRYFGT
Sbjct: 190 IFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 242
Score = 65.4 bits (159), Expect = 4e-12
Identities = 24/49 (48%), Positives = 39/49 (79%)
Query: 419 LALLPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFK 467
+ L+ +T Q++ + T IR+K+T ++EF+FY+ RLIRL+IE AL+ LPF+
Sbjct: 35 VVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQ 83
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A
{Escherichia coli}
Length = 208
Score = 78.8 bits (194), Expect = 5e-17
Identities = 20/52 (38%), Positives = 36/52 (69%)
Query: 461 LSLLPFKVSIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512
L L+ I ++ A P+V++ T+++D +NE+ Y+IPG+G+ GD+ FGT+
Sbjct: 157 LVLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK 208
Score = 62.7 bits (152), Expect = 2e-11
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 422 LPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFK 467
+ P +K +R +D S F + + L+ A + L +
Sbjct: 5 EVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETE 50
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 78.0 bits (192), Expect = 1e-16
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 461 LSLLPFKVSIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512
+ L+ + ++ A P+V I +A+D +N++ Y++PG+G+ GDR FGT+
Sbjct: 158 MCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK 209
Score = 68.0 bits (166), Expect = 3e-13
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 422 LPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFK 467
+ + P I+ T+IR+K+T EF + L+ LP +
Sbjct: 6 VFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLE 51
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1
phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A
{Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A*
1xtu_A* 1xtv_A* 3g6w_A*
Length = 216
Score = 78.1 bits (192), Expect = 1e-16
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 461 LSLLPFKVSIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFG 510
+S++ + ++ I +P + + T A+DPE+N Y++PG+G+ GDR FG
Sbjct: 167 VSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216
Score = 61.9 bits (150), Expect = 4e-11
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 422 LPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFK 467
+ + P + T +R+K T + F RL R++ + L ++
Sbjct: 5 VIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYE 50
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI,
protein structure initiative, joint center for structu
genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP:
c.61.1.1
Length = 221
Score = 77.7 bits (191), Expect = 1e-16
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 470 IHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512
+ ++ + +VKI +A+D +N++ Y+IPG+G+ GDR F T+
Sbjct: 179 VEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRTK 221
Score = 68.0 bits (166), Expect = 3e-13
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 422 LPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFK 467
+ + P IK T +R+K+T EF + + L+ A L +
Sbjct: 18 VVDHPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHLKCE 63
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.60A {Burkholderia pseudomallei}
Length = 217
Score = 77.6 bits (191), Expect = 2e-16
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 459 FALSLLPFKVSIHSIAYAFPNVKIVTSAVDPEINENFYVIPGIGNFGDRYFGTE 512
L+L+ + A P+VK+ +++D ++++ Y++PG+G+ GDR FGT+
Sbjct: 163 MFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFGTK 216
Score = 65.7 bits (160), Expect = 2e-12
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 422 LPETPQIKGLHTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFK 467
+ + P I+ T +R+KDTS F + + L+ LP
Sbjct: 13 ILDHPLIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPIT 58
Score = 34.9 bits (80), Expect = 0.045
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 270 DHDVLLMDATVATGAAAMMAIRILLDHDVPEGYIR 304
D +L D VATG +A AI +L VP +
Sbjct: 129 DRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLM 163
Score = 31.8 bits (72), Expect = 0.36
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 248 VLLMDATVATGAAAMMAIRILLDHDVLLMDATVATGAAAMMAIRILLDH 296
+L D VATG +A AI +L V AA +++ D
Sbjct: 132 FILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDA 180
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 72.0 bits (175), Expect = 5e-14
Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 24/193 (12%)
Query: 30 RPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIESL-----NVPWVTLLSMDSFYRVL 84
P W+ + P I G SGK+ + +I L + S+D FY
Sbjct: 20 IPEWFETGNKC--PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL-T 76
Query: 85 NEEQHKKAAQNEYN-----FDHPDAFDFELLLPTLQRLKEGKKVDV-----------PIY 128
+E+Q K Q + N P D +LL L + + +
Sbjct: 77 HEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQF 136
Query: 129 NFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDIL 188
T K ++ I EG NP + + + + DV D+L
Sbjct: 137 KGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLL 196
Query: 189 ARGRDLEGVIKQY 201
R +++ + +
Sbjct: 197 WRNPEIKSLGIVF 209
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 5e-11
Identities = 93/605 (15%), Positives = 173/605 (28%), Gaps = 240/605 (39%)
Query: 11 KLSAESILQSKTRTIYTAGRPPWYN--------------------KAGEQVEP--FVIGI 48
+ E S +Y R YN +A ++ P V+ I
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-I 155
Query: 49 CGGSASGKTTVATKIIESL--------NVPWVTL---------LSM-------------- 77
G SGKT VA + S + W+ L L M
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 78 ----------------DSFYRVLNEEQHKKA---AQNEYNFDHPDAFDFE--LLLPTLQR 116
R+L + ++ N N +AF+ +LL T R
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT--R 273
Query: 117 LKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDAD 176
+ +F++ + T + + + +V LL +K ++D
Sbjct: 274 -------FKQVTDFLSAATTTH--------ISLDHHSMTLTPDEVKSLL-LK-YLDCRPQ 316
Query: 177 -------------VRLARRLKRDILAR-------GRD-LEGVIKQYVNMVKPA------- 208
+ + RD LA D L +I+ +N+++PA
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 209 -FSTFIAPSMVHADIIVPRGGENCVAI---DLI---VQHIHSQLQAVLLMDATVATGAAA 261
S F P +P +++ D+I V + ++L L++
Sbjct: 377 RLSVF--PP----SAHIP---TILLSLIWFDVIKSDVMVVVNKLHKYSLVE-----KQPK 422
Query: 262 MMAIRILLDHDVLLMDATVATGAAAMMAIRILLDH-DVPEGYIRRMWSVDVP-----IYN 315
I I + L A+ R ++DH ++P+ + + P Y+
Sbjct: 423 ESTISI---PSIYLELKVKLENEYALH--RSIVDHYNIPKTF--DSDDLIPPYLDQYFYS 475
Query: 316 FVTHSRETRTKPMYGANVIIFEGILAFHNPQVLERGFKLRPTLAQSYAGQPLPEALALLP 375
+ H L PE + L
Sbjct: 476 H-----------------------IGHH--------------LKN--IEH--PERMTLFR 494
Query: 376 ETPQIKGLHTAGNRTRVSRVLLR-GF---KLRPTLAQSYAGQPLPEALALLPETPQIKGL 431
V L F K+R + + ++L Q+K
Sbjct: 495 ------------------MVFLDFRFLEQKIR------HDSTAWNASGSILNTLQQLKFY 530
Query: 432 HTFIRNKDTSRDEFIFYSKRLIRLVIEFALSLLPFKVSIHSIAYAFPNVKIVTSAVDPEI 491
+I + D + RL+ +++F LP K+ + I + + ++ A+ E
Sbjct: 531 KPYICDNDPKYE-------RLVNAILDF----LP-KIEENLICSKYTD--LLRIALMAE- 575
Query: 492 NENFY 496
+E +
Sbjct: 576 DEAIF 580
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 9e-08
Identities = 80/515 (15%), Positives = 159/515 (30%), Gaps = 178/515 (34%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVP---WVTLLSM-DSFYRVLNEEQHKKAAQNEYN 98
P + + G L VP + + + F ++L E AA +E
Sbjct: 8 PLTL------SHGSLEH------VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE-- 53
Query: 99 FDHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHN 158
P EL+ L +V+ E +
Sbjct: 54 ---PTT-PAELVGKFLG--------------YVSSLVEPSKVGQF--------------- 80
Query: 159 PQVLELLDMKVFVDT---DADV-RLARRLKRDILARGRDLEGVIKQYVN--------MVK 206
QVL L + F + D+ LA +L ++ + +IK Y+ K
Sbjct: 81 DQVLNLC-LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 207 PAFSTFI-APSMVHADIIVPRGG----ENCVAIDLIVQHIH----SQLQAVL-LMDATVA 256
+ S A +A ++ GG ++ +L + ++ + ++ T++
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-EL--RDLYQTYHVLVGDLIKFSAETLS 196
Query: 257 TGAAAMMAIRILLDH--DVL--LMDAT-------VATGAAAMMAIRIL-LDHDVPEGYIR 304
+ + ++L L + + + + + I ++ L H Y+
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH-----YVV 251
Query: 305 RMWSVDVPIYNFVTHSRETRTKPMYGANVIIFEGILA------------FHN--PQVLER 350
+ ++ + GA +G++ F + +
Sbjct: 252 TAKLLGFTPGELRSYLK--------GATGHS-QGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 351 GF-------------KLRPTLAQSYA----GQPLPEALALLPETPQIKGLHTAGNRTRVS 393
F L P++ + G P P L+ I L + V+
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-MLS-------ISNLTQEQVQDYVN 354
Query: 394 RV---LLRGFKLRPTL---AQSY--AGQPLPEALALLPETPQIKGLHTFIRN------KD 439
+ L G ++ +L A++ +G P P++L GL+ +R D
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSG-P-PQSLY---------GLNLTLRKAKAPSGLD 403
Query: 440 TSRDEFIFYSKRLIRLVIEFALSLLPFKVSI--HS 472
SR I +S+R ++ F LP V+ HS
Sbjct: 404 QSR---IPFSERKLKFSNRF----LP--VASPFHS 429
Score = 32.3 bits (73), Expect = 0.53
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 13/59 (22%)
Query: 34 YNKAGEQVEPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSFYRVLNEEQH 89
YN +Q + G T T ++ + + + L S V E H
Sbjct: 1846 YNVENQQY------VAAGDLRALDT-VTNVLNFIKLQKIDIIELQKSLSLEEV---EGH 1894
Score = 31.2 bits (70), Expect = 1.3
Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 35/150 (23%)
Query: 354 LRP-TLAQSYAGQPLPEALALLPETPQIKGLHTAGNRTRVSRVLLR-GF-KLRPTLAQSY 410
RP TL+ G L E + L+P ++ L+ F K+ P + +
Sbjct: 6 TRPLTLSH---GS-L-EHVLLVPT-----ASFFIASQ-------LQEQFNKILPEPTEGF 48
Query: 411 AGQPLPEALA-LLPETPQIKGLHTFIRNK--DTSRDEFIFYSKRLIRLVI-EFALSLLPF 466
A P A L+ K L ++ + + +F +++ L + EF L
Sbjct: 49 AADDEPTTPAELV-----GKFLG-YVSSLVEPSKVGQF----DQVLNLCLTEFENCYLEG 98
Query: 467 KVSIHSIAYAFPNVKIVTSAVDPEINENFY 496
IH++A T E+ +N+
Sbjct: 99 N-DIHALAAKLLQENDTTLVKTKELIKNYI 127
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 44.9 bits (106), Expect = 2e-05
Identities = 17/161 (10%), Positives = 48/161 (29%), Gaps = 23/161 (14%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA 104
+ I G + GK+T ++ L+ + D ++ +E
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAY--IEGDIINHMVVGGYRPPWESDELLALTWKN 61
Query: 105 FDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLEL 164
+ L V + +++ E + + + A + ++
Sbjct: 62 ITDLT----VNFLLAQNDV---VLDYIAFPDEAEA---------LAQTVQAKVD----DV 101
Query: 165 LDMKVFVDTDADVRLARRLKRDILA-RGRDLEGVIKQYVNM 204
+ + T+ + L R R G +++++ +
Sbjct: 102 EIRFIILWTNREELLRRDALRKKDEQMGERCLELVEEFESK 142
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 44.5 bits (105), Expect = 2e-05
Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 28/147 (19%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHP 102
P +I + G A+GKTT++ + L +P LLS D+F V+ + +
Sbjct: 5 PALIIVTGHPATGKTTLSQALATGLRLP---LLSKDAFKEVMFDGL---GWSDREWSRRV 58
Query: 103 DAFDFELLLPTLQR-LKEGKKV--DVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNP 159
A +L T L+ G+ + + NF R + +
Sbjct: 59 GATAIMMLYHTAATILQSGQSLIME---SNFRVDLDTER-----------MQNLHTIAPF 104
Query: 160 QVLELLDMKVFVDTDADVRLARRLKRD 186
++ + DV + R L R
Sbjct: 105 TPIQ-----IRCVASGDVLVERILSRI 126
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 42.5 bits (100), Expect = 8e-05
Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 33/162 (20%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--VLNEEQHKKAAQNEYNFDHP 102
VI I G SGK+ A K+++ + M R E + + +
Sbjct: 3 VILITGMPGSGKSEFA-KLLKERGAKVI---VMSDVVRKRYSIEAKPGERLMDFAKRLRE 58
Query: 103 DAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVL 162
D + ++ L ++++F+G+ + +
Sbjct: 59 IYGDGVVARLCVEELGTSNH-----------------------DLVVFDGVRSLAEVEEF 95
Query: 163 E----LLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQ 200
+ V V + +R R ++R +++ +I++
Sbjct: 96 KRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRR 137
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 43.9 bits (103), Expect = 9e-05
Identities = 27/234 (11%), Positives = 62/234 (26%), Gaps = 60/234 (25%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH--- 101
+ + + +NV + S++ V + H + D
Sbjct: 121 CTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRCLDLFKDPQTA 180
Query: 102 ------PDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRE--------------TRTKP 141
P FD L + L + V ++ + P
Sbjct: 181 HKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVP 240
Query: 142 MY----------------GANVIIFEGILAFHNP----QVLELLD-----MKVFVDTDAD 176
+ ++I EG+ ++ ++ + L + +D D +
Sbjct: 241 GFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYE 300
Query: 177 VRLARRLKRDILA-RGRDLEGVIKQY-----VNMVKPAFSTFIAPSMVHADIIV 224
R KR + + + +++ +N I ++ D IV
Sbjct: 301 ATEERVAKRHLQSGLVTTIAEGREKFRSNDLLN------GRDIDNHLIKVDNIV 348
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 40.5 bits (94), Expect = 4e-04
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFD 100
+I + GGS++GK+ + + L PW+ +DS + + E++ D
Sbjct: 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLA-FGVDSLIEAMPLKMQSAEGGIEFDAD 59
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 40.9 bits (95), Expect = 5e-04
Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 3/147 (2%)
Query: 42 EPFVIGICGGSASGKTTVATKIIESLNVPWV--TLLSMDSFYRVLNEEQHKKAAQNEYNF 99
+ +I I SG V K+ E L + + +L + S + E+ + A + N
Sbjct: 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRLADEKAGNN 72
Query: 100 DHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNP 159
+ + K+ P F S R + + +
Sbjct: 73 LL-YRLGGGRKIDLHSKPSPNDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQ 131
Query: 160 QVLELLDMKVFVDTDADVRLARRLKRD 186
+++FV TD ++ R ++ D
Sbjct: 132 DEDIERLIRIFVYTDKVKKVQRVMEVD 158
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 40.7 bits (95), Expect = 5e-04
Identities = 26/190 (13%), Positives = 65/190 (34%), Gaps = 23/190 (12%)
Query: 46 IGICGGSASGKTTVATKIIESLNVP--------WVTLLSMDSFYRVLNEEQHKKAAQNEY 97
I I G +GK+T++ +I + L + +Y ++ K + +
Sbjct: 3 IAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYF---EQYY----KDLKKTVFKMQI 55
Query: 98 NFDHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILA-- 155
+ + + + ++ PI+ V + + Y + + ++
Sbjct: 56 YMLTARSKQLKQAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLEN 115
Query: 156 FHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVI-KQYVNMVKPAFSTFIA 214
P+ D+ +++ ++R I RGR E +I ++Y + + F
Sbjct: 116 LKIPENKLSFDIVIYLRVSTKTAISR-----IKKRGRSEELLIGEEYWETLNKNYEEFYK 170
Query: 215 PSMVHADIIV 224
++ V
Sbjct: 171 QNVYDFPFFV 180
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 40.5 bits (94), Expect = 5e-04
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 38 GEQVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLN 85
+ + ++ + G SGK+T+A + VP V D + +
Sbjct: 4 TDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKV-HFHSDDLWGYIK 50
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 40.4 bits (94), Expect = 5e-04
Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 18/156 (11%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA 104
V+ + G G TT + +++L V + + + + + D
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 64
Query: 105 FDF-ELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLE 163
+ +++ E K + TH + V +G L VL
Sbjct: 65 ETQKRIQKMAGRKIAEMAKESPVAVD--TH-----------STVSTPKGYLPGLPSWVLN 111
Query: 164 LL--DMKVFVDTDADVRLARRLKRDILARGRDLEGV 197
L D+ + V+T D L RR+ + R RDL+
Sbjct: 112 ELNPDLIIVVETTGDEILMRRMSDE--TRVRDLDTA 145
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 40.0 bits (93), Expect = 7e-04
Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 15/147 (10%)
Query: 42 EPFVIGICGGSASGKTTVATKIIESLNVPWV--TLLSMDSFYRVLNEEQHKKAAQNEYNF 99
+ +I I SG VA K+ E N+P LL + ++E ++ + NF
Sbjct: 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYSKELLDEVAKDGRYSKEVLERFDEKPMNF 64
Query: 100 DHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNP 159
+ Q + + R K + G A
Sbjct: 65 AFIPVPAGGTTISLEQDI------------AIRQFNFIRKKANEEKESFVIVGRCAEEIL 112
Query: 160 QVLELLDMKVFVDTDADVRLARRLKRD 186
+ F+ D D + R ++R+
Sbjct: 113 SDNP-NMISAFILGDKDTKTKRVMERE 138
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 39.0 bits (91), Expect = 0.001
Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 38/172 (22%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA 104
+I G SGK+T A + I P ++ D + + + ++EY +
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKN--PGFYNINRDDYRQSI----MAHEERDEYKYT--KK 55
Query: 105 FDFELLLPTLQRLKEGKKVDVPIYNFV---TH-SRETRTKPM-----YGANVIIFEGILA 155
+ + K + + T+ + E R YG V
Sbjct: 56 KEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEH------ 109
Query: 156 FHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKP 207
D + R KR + ++ + Y +M +
Sbjct: 110 -------------KVFDVPWTELVKRNSKRGT--KAVPIDVLRSMYKSMREY 146
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase), S
genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 39.2 bits (92), Expect = 0.002
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 10 KKLSAESILQSKTRTIYTAGRPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIESLNV 69
K+S+ S + R + +PP + +V+G+ G S SGK++VA + +++L
Sbjct: 46 DKVSSSSF---RQRILGNLLQPP-NERPELPSGLYVLGLTGISGSGKSSVA-QRLKNLGA 100
Query: 70 PWV 72
+
Sbjct: 101 YII 103
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 38.9 bits (90), Expect = 0.002
Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 30/178 (16%)
Query: 36 KAGEQVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLS--------------MDSFY 81
K E +PF + I G SGKTT + N + LL+ ++ Y
Sbjct: 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKN--DICLLTEPVEKWRNVNGVNLLELMY 70
Query: 82 RVLNEEQHKKAAQNEYNFDHPD-AFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTK 140
++ K A + L+ ++ + + +
Sbjct: 71 ----KDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQ 126
Query: 141 PMYGANVIIFEGILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVI 198
MY ++ I + Q D+ +++ T +V R I R R E +
Sbjct: 127 GMYNTLEEWYKFIEESIHVQA----DLIIYLRTSPEVAYER-----IRQRARSEESCV 175
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 37.7 bits (87), Expect = 0.004
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLN 68
++ I G S SGKTT+ T+++ L
Sbjct: 2 SLILSIVGTSDSGKTTLITRMMPILR 27
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 37.5 bits (87), Expect = 0.007
Identities = 24/170 (14%), Positives = 51/170 (30%), Gaps = 52/170 (30%)
Query: 45 VIGICGGSASGKTTVATKIIESL--NVPWVTLLSMD------SFYRVLNEEQHKKAAQNE 96
+I + G GK+T + + + L N V +L D ++ EE KK+
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYR- 64
Query: 97 YNFDHPDAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPM-----YGANVIIFE 151
+ + V I + + R + Y N I
Sbjct: 65 ----------------LIDSALKNYWV---IVDDTNYYNSMRRDLINIAKKYNKNYAI-- 103
Query: 152 GILAFHNPQVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQY 201
+++ DV + R ++R ++ + +++
Sbjct: 104 -----------------IYLKASLDVLIRRNIERGEKIPNEVIKKMYEKF 136
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 37.7 bits (87), Expect = 0.007
Identities = 24/143 (16%), Positives = 42/143 (29%), Gaps = 18/143 (12%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA 104
+I G SGK+T A + I P ++ D + + + H++ + +Y
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKN--PGFYNINRDDYRQSIMA--HEERDEYKYTKKKEGI 59
Query: 105 FDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLEL 164
L G V I + + E R +E + +V
Sbjct: 60 VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLA---------WETFAKEYGWKVEH- 109
Query: 165 LDMKVFVDTDADVRLARRLKRDI 187
D + R KR
Sbjct: 110 ----KVFDVPWTELVKRNSKRGT 128
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 36.2 bits (83), Expect = 0.012
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 45 VIGICGGSASGKTTVATKIIESL 67
V + G SGKTT+ K + +
Sbjct: 6 VWQVVGYKHSGKTTLMEKWVAAA 28
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 36.4 bits (83), Expect = 0.017
Identities = 26/186 (13%), Positives = 54/186 (29%), Gaps = 42/186 (22%)
Query: 10 KKLSAESILQSKTRTI--YTAGRPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIESL 67
+ + + R + T G+ +P I + G S +GKTT+ +
Sbjct: 4 QDYTDSEFKHALARNLRSLTRGKKS-------SKQPIAILLGGQSGAGKTTIHRIKQKEF 56
Query: 68 NVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKKVDVPI 127
V ++ DSF + + + ++ F +++ + +L
Sbjct: 57 QGNIV-IIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSLG------ 109
Query: 128 YNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVLELLDMK--------VFVDTDADVRL 179
YN + EG L + +K + T ++
Sbjct: 110 YNL------------------LIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSY 151
Query: 180 ARRLKR 185
L R
Sbjct: 152 LSTLIR 157
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme
kinase, structural genomics, joint center for
structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga
maritima}
Length = 192
Score = 35.6 bits (83), Expect = 0.019
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 42 EPFVIGICGGSASGKTTVATKIIESLNVPWV 72
VIG+ G +GK+TV + V
Sbjct: 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVV 41
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2
function project, S2F, structural genomics,
transferase; HET: ATP; 2.00A {Haemophilus influenzae}
SCOP: c.37.1.1
Length = 206
Score = 35.2 bits (82), Expect = 0.032
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWV 72
+++G+ GG SGKTT+A + L VP V
Sbjct: 2 TYIVGLTGGIGSGKTTIA-NLFTDLGVPLV 30
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 35.3 bits (80), Expect = 0.034
Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 19/171 (11%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA 104
+I + G SGK T A I+ + + V L AA +Y
Sbjct: 3 LIFLSGVKRSGKDTTADFIMSNYS--AVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKE 60
Query: 105 FDFE----------------LLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVI 148
F+ ++ GK ++ F +E+ +
Sbjct: 61 FEGIDYDRETNLNLTKLEVITIMEQAFCYLNGKSPIKGVFVFDDEGKESVNFVAFNKITD 120
Query: 149 IFEGILAFHNP-QVLELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVI 198
+ I + ++++ L + V+ + + D L +
Sbjct: 121 VINNIEDQWSVRRLMQALGTDLIVNNFDRMYWVKLFALDYLDKFNSGYDYY 171
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3;
1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A*
1viy_A 1t3h_A 1n3b_A
Length = 218
Score = 34.8 bits (81), Expect = 0.042
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWV 72
+++ + GG SGK+TVA L + +
Sbjct: 4 RYIVALTGGIGSGKSTVA-NAFADLGINVI 32
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 34.7 bits (79), Expect = 0.044
Identities = 22/157 (14%), Positives = 47/157 (29%), Gaps = 21/157 (13%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDA 104
+ + G GK+TV K+ E L+ + ++ +L A++
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 105 FDFELLLPT----LQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQ 160
+ L + + TH A + G L
Sbjct: 63 EKQKKLQIDAAKGIAEEARAGGEGYLFID--TH-----------AVIRTPSGYLPGLPSY 109
Query: 161 VLELL--DMKVFVDTDADVRLARRLKRDILARGRDLE 195
V+ + + ++ D + L+R+ + R R+
Sbjct: 110 VITEINPSVIFLLEADPKIILSRQKRDT--TRNRNDY 144
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 34.1 bits (77), Expect = 0.051
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 45 VIGICGGSASGKTTVATKIIESL 67
++ S +GKTT+ K+I +L
Sbjct: 8 LLAFAAWSGTGKTTLLKKLIPAL 30
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: ATP; 2.80A {Thermus
thermophilus} SCOP: c.37.1.1
Length = 203
Score = 34.4 bits (80), Expect = 0.053
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWV 72
P +IGI G SGK+TVA ++ S P +
Sbjct: 8 PIIIGITGNIGSGKSTVA-ALLRSWGYPVL 36
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 33.9 bits (77), Expect = 0.087
Identities = 22/182 (12%), Positives = 49/182 (26%), Gaps = 31/182 (17%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYN---- 98
P + I G A GK+T + ++ V + ++ + K
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLD 61
Query: 99 --FDHPDAFDFELLLPTL-QRLKEGKKVDVPIYN-----------------FVTHSRETR 138
+ P + + + RLK + ++
Sbjct: 62 MMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFE 121
Query: 139 TKPMYGANVIIFEGILAFHNPQVLELL--DMKVFVDTDADVRLARRLKRDILARGRDLEG 196
+ I++ +F + + +++ V L R + R R+ E
Sbjct: 122 NGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKR-----LYQRAREEEK 176
Query: 197 VI 198
I
Sbjct: 177 GI 178
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 33.5 bits (76), Expect = 0.097
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWV 72
P I + G S SGK++V I E+ P++
Sbjct: 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 33.1 bits (75), Expect = 0.11
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 46 IGICGGSASGKTTVATKIIESLNVPWVT---LLSMDSFYRVLNEEQHKKAAQNEYNFDH 101
I + G GKTT+ ++ + ++ L + Y +EE + D
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDE 72
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Length = 204
Score = 33.3 bits (77), Expect = 0.13
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 44 FVIGICGGSASGKTTVATKIIESLNVPWV 72
IG+ G GK+TVA ++ L +
Sbjct: 2 KRIGLTGNIGCGKSTVA-QMFRELGAYVL 29
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 33.1 bits (75), Expect = 0.16
Identities = 30/205 (14%), Positives = 60/205 (29%), Gaps = 40/205 (19%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHP 102
+ + G S SGKTT+A + + + + D+F+ N + D
Sbjct: 29 TRHVVVMGVSGSGKTTIAHGVADETGLEF---AEADAFHSPENI---ATMQRGIPLTDED 82
Query: 103 DAFDFELLLPTLQRLKEGKKVDVPIYNFVTHSRETRTKPMYGANVIIFEGILAFHNPQVL 162
L + + I R R +L P V
Sbjct: 83 RWPWLRSLAEWMDARAD--AGVSTIITCSALKRTYRD-------------VLREGPPSVD 127
Query: 163 ELLDMKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVHADI 222
+ +D A+V R KR G + ++++ +T A + I
Sbjct: 128 F-----LHLDGPAEVIKGRMSKR----EGHFMP------ASLLQSQLATLEALEPDESGI 172
Query: 223 IVPRGGENCVAIDLIVQHIHSQLQA 247
++ + +++ + L
Sbjct: 173 VLDLRQ----PPEQLIERALTWLDI 193
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 32.8 bits (75), Expect = 0.17
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWV 72
+I + G K+TVA K+ + L P +
Sbjct: 3 LIILEGPDCCFKSTVAAKLSKELKYPII 30
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.17
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 13/40 (32%)
Query: 184 KRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSM-VHADI 222
K+ + + L+ +K Y S AP++ + A +
Sbjct: 19 KQAL----KKLQASLKLYA----DD-S---APALAIKATM 46
Score = 31.8 bits (71), Expect = 0.26
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 7/27 (25%)
Query: 6 KSSTKKLSAESILQSKTRTIYTAGRPP 32
K + KKL ++ L+ +Y P
Sbjct: 19 KQALKKL--QASLK-----LYADDSAP 38
>3m4u_A Tyrosine specific protein phosphatase, putative; protein tyrosine
phosphatase, hydrolase; 2.39A {Trypanosoma brucei}
Length = 306
Score = 33.0 bits (76), Expect = 0.21
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 114 LQRLKEGKKVDVPIYNFVTHSRETR 138
L ++ G D +Y+ V ++ R
Sbjct: 246 LLHIERGILTDSTVYSIVAAMKQKR 270
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 32.4 bits (73), Expect = 0.24
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 46 IGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDHPDAF 105
I I G +GKT++A I L+ +++ E E + +
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELD-----GFQHLEVGKLVKENHFYTEYDTELDTHIIEEK 67
Query: 106 DFELLLPTLQRLKEGKK 122
D + LL ++ + +
Sbjct: 68 DEDRLLDFMEPIMVSRG 84
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 31.9 bits (72), Expect = 0.32
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWV 72
+ + G S SGK+ VA+++ L+ ++
Sbjct: 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 32.7 bits (75), Expect = 0.36
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
Query: 36 KAGEQVEPFVIGICGGSASGKTTVATKII 64
+ G+ V+G+ G + GK+T A KI+
Sbjct: 101 RPGQ-----VLGLVGTNGIGKST-ALKIL 123
Score = 28.1 bits (63), Expect = 8.8
Identities = 6/20 (30%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 45 VIGICGGSASGKTTVATKII 64
++ + G + +GKTT+ K++
Sbjct: 380 ILVMMGENGTGKTTLI-KLL 398
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 31.9 bits (71), Expect = 0.49
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 40 QVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNF 99
P + G SGKT++ + I E + ++ D+F + +
Sbjct: 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVI-VIDNDTFKQQHPNFDELVKLYEKDVV 88
Query: 100 DHPDAFDFELLLPTLQRLKEGKK 122
H + + + RL +
Sbjct: 89 KHVTPYSNRMTEAIISRLSDQGY 111
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 32.3 bits (74), Expect = 0.49
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 36 KAGEQVEPFVIGICGGSASGKTTVATKII 64
K ++G+ G + GKTT KI+
Sbjct: 23 KNNT-----ILGVLGKNGVGKTT-VLKIL 45
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis; HET: DST AMP; 2.10A {Agrobacterium
tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 31.7 bits (72), Expect = 0.49
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 45 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVLN 85
+ I G + SGKT +A +I + P ++++D +
Sbjct: 3 LHLIYGPTCSGKTDMAIQIAQETGWP---VVALDRVQCCPQIA 42
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 31.1 bits (70), Expect = 0.51
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 46 IGICGGSASGKTTVATKIIESLNVPWV 72
I I G GKTT+ KI+E L +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAI 29
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 31.5 bits (72), Expect = 0.77
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
Query: 36 KAGEQVEPFVIGICGGSASGKTTVATKII 64
K G V+GI G + +GKTT A KI+
Sbjct: 115 KDGM-----VVGIVGPNGTGKTT-AVKIL 137
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 29.9 bits (67), Expect = 1.3
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWV 72
+I I G GKT A + E L +V
Sbjct: 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 30.6 bits (70), Expect = 1.3
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYR 82
PF+I I G +ASGKT ++ ++ + N ++S DS Y+
Sbjct: 7 PFLIVIVGPTASGKTELSIEVAKKFNGE---IISGDSMQVYQ 45
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 30.7 bits (69), Expect = 1.5
Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 42 EPFVIGICGGSASGKTTVATKIIESLNVP---------WVTL---LSMDSFYRVLNEEQH 89
+ F + + G + SGK+ +A++ + + W+ +F +
Sbjct: 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210
Query: 90 KKAAQNEYNFDHPDAFDFELLLPTLQRLKEGKK 122
K+ + NF + +L + +
Sbjct: 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRP 243
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural
genomics, joint cente structural genomics, JCSG; 2.42A
{Exiguobacterium sibiricum} SCOP: b.55.1.13
Length = 193
Score = 30.0 bits (67), Expect = 1.6
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 440 TSRDEFIFYSKRLIRLVIEFALSLLPFKVSIHSIAY---AFPNVKIVTSAV---DPEI 491
+ DE+ F + L+ L E A+S K ++ Y +V T+ D EI
Sbjct: 36 SKTDEYCFTNLALVHLDGESAVSS---KRVLYRYPYAHYPIRHVMFETAGTVDLDVEI 90
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 30.2 bits (69), Expect = 1.7
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYRVLN 85
P I + G +ASGKT +A ++ + L V L+S+DS Y+ ++
Sbjct: 10 PKAIFLMGPTASGKTALAIELRKILP---VELISVDSALIYKGMD 51
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 30.5 bits (68), Expect = 1.7
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 19 QSKTRTIY--TAGRPPWYNKAGEQVE--PFVIGICGGSASGKTTVATKIIESLNVPWVTL 74
QS+ + I+ RP G ++ P VI + G A GKT ++ K+ LN W+ +
Sbjct: 7 QSRVQKIWVPVDHRPSLPRSCGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLN--WIGV 64
Query: 75 LSMDSFYRVLNEEQHKKAAQNEYNFDHPD 103
+ + V + + YNF PD
Sbjct: 65 PT--KVFNVGEYRREAVKQYSSYNFFRPD 91
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.8
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 77 MDSFYRVLNEEQHKKAAQNEYNFDHPDAF----DFELL 110
++ + + +E+ K N AF D +++
Sbjct: 120 LEEWNQRQSEQVEKNKINNR---IADKAFYQQPDADII 154
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 29.8 bits (68), Expect = 2.0
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYR 82
++ I G +A GKT + + + LN ++S DS YR
Sbjct: 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGE---VISGDSMQVYR 41
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 29.2 bits (65), Expect = 2.5
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 45 VIGICGGSASGKTTVATKIIESLN 68
V+ G SGK V + L
Sbjct: 13 VLLFSGKRKSGKDFVTEALQSRLG 36
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 29.4 bits (67), Expect = 2.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 43 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--FYR 82
P I + G +A+GKT +A + ++L L+S+DS YR
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALADALP---CELISVDSALIYR 43
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.9 bits (64), Expect = 3.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 46 IGICGGSASGKTTVATKIIESL 67
+ + G GKTT+ K E L
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVL 25
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all
alpha, transcription, transcription RE transcription
regulator; 2.50A {Corynebacterium glutamicum} PDB:
3aqs_A
Length = 245
Score = 28.7 bits (64), Expect = 4.3
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 391 RVSRVLLRGFKLRPTLAQSYAGQPLPEALALLPE 424
+ +LR ++ A+ A +PLPE + P+
Sbjct: 212 IFAAAMLRMVGVQAAEAREIASRPLPEISPVKPQ 245
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 29.0 bits (65), Expect = 4.4
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 40 QVEPFVIGICGGSASGKTTVATKIIESLN---------VPWVTL 74
EP + I G + GK+ +A + + + V WV++
Sbjct: 144 NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 28.4 bits (64), Expect = 4.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 43 PFVIGICGGSASGKTTVATKIIESL 67
G SGKT + K+I++L
Sbjct: 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 28.9 bits (65), Expect = 4.6
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 114 LQRLKEGKKVDVPIYNFVTHSRETR 138
+ + +KVD ++ FV+ R R
Sbjct: 247 MAMMHAEQKVD--VFEFVSRIRNQR 269
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling
protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB:
3c2w_A* 3g6o_A* 3ibr_A*
Length = 505
Score = 28.8 bits (64), Expect = 4.8
Identities = 12/85 (14%), Positives = 20/85 (23%), Gaps = 3/85 (3%)
Query: 239 QHIHSQLQAVLLMDATVATGAAAMMAIRILLDHDVLLMDATVATGAAAMMAIRILLDHDV 298
+ + A A L D + GA M+ R L
Sbjct: 310 RIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGD 369
Query: 299 PEGYIRRM--WSVDVPIYN-FVTHS 320
E + P + + T +
Sbjct: 370 FERQAGNVLQRLQRDPERDIYHTDN 394
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 28.4 bits (64), Expect = 5.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 43 PFVIGICGGSASGKTTVATKIIESL 67
+ I G SGKT + + IE +
Sbjct: 30 TVAVNIMGAIGSGKTLLIERTIERI 54
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal
transduction, glycoprotein, phosphorylation, signal;
2.25A {Mus musculus} SCOP: c.45.1.2
Length = 302
Score = 28.4 bits (64), Expect = 5.6
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 114 LQRLKEGKKVDVPIYNFVTHSRETR 138
L + +KVD +Y FV+ R R
Sbjct: 249 LDMMHSERKVD--VYGFVSRIRAQR 271
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus
norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A*
2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 28.8 bits (64), Expect = 5.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 20 SKTRTIYTAGRPPWY-NKAGEQVE--PFVIGICGGSASGKTTVATKIIESLN 68
K Y+ GRP + ++ G + P +I + G A GKT ++ K+ LN
Sbjct: 13 KKIFMPYSNGRPALHASQRGVCMTNCPTLIVMVGLPARGKTYISKKLTRYLN 64
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 28.2 bits (64), Expect = 6.0
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 26 YTAGRPPWYN------KAGEQVEPFVIGICGGSASGKTTVA 60
Y P + K GE VIGI G S SGK+T+
Sbjct: 17 YKPDSPVILDNINLSIKQGE-----VIGIVGRSGSGKSTLT 52
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 28.5 bits (64), Expect = 6.1
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 114 LQRLKEGKKVDVPIYNFVTHSRETR 138
LQ++K+ V+ + F+ H R R
Sbjct: 252 LQQIKDKSTVN--VLGFLKHIRTQR 274
>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor
phosphatase, human, structural GENO structural genomics
consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB:
3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A*
3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A*
3qcn_A
Length = 320
Score = 28.4 bits (64), Expect = 6.3
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 114 LQRLKEGKKVDVPIYNFVTHSRETR 138
LQ++K+ V+ + F+ H R R
Sbjct: 270 LQQIKDKSTVN--VLGFLKHIRTQR 292
>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase,
STEP, hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB:
2bij_A 2bv5_A*
Length = 305
Score = 28.5 bits (64), Expect = 6.5
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 114 LQRLKEGKKVDVPIYNFVTHSRETR 138
Q+L++ VD I R+ R
Sbjct: 255 CQQLRQEGVVD--ILKTTCQLRQDR 277
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo
sapiens} SCOP: c.45.1.2
Length = 314
Score = 28.4 bits (64), Expect = 6.6
Identities = 5/25 (20%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 114 LQRLKEGKKVDVPIYNFVTHSRETR 138
L +++G ++ I + + R+ R
Sbjct: 233 LVLMEKGDDIN--IKQVLLNMRKYR 255
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 28.5 bits (64), Expect = 7.0
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 114 LQRLKEGKKVDVPIYNFVTHSRETR 138
L+R+K K VD IY VT R R
Sbjct: 233 LERMKHEKTVD--IYGHVTCMRSQR 255
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 28.2 bits (63), Expect = 7.5
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 114 LQRLKEGKKVDVPIYNFVTHSRETR 138
L+ L+ KVD +Y +V R R
Sbjct: 247 LEGLEAENKVD--VYGYVVKLRRQR 269
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 27.5 bits (62), Expect = 8.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 39 EQVEPFVIGICGGSASGKTTVATKIIESLNVP 70
E+ +P V+ + GG SGK T I+
Sbjct: 2 EKSKPNVVFVLGGPGSGKGTQCANIVRDFGWV 33
>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine
phosphatase, human, structural GE structural genomics
consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo
sapiens} PDB: 1rpm_A 2c7s_A
Length = 286
Score = 27.9 bits (63), Expect = 8.8
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 114 LQRLKEGKKVDVPIYNFVTHSRETR 138
L + VD I+N V R R
Sbjct: 236 LDMAENEGVVD--IFNCVRELRAQR 258
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 28.0 bits (63), Expect = 9.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 36 KAGEQVEPFVIGICGGSASGKTTVATKIIESLNVP 70
K G V+GI G + +GK+T A KI+ +P
Sbjct: 45 KEGM-----VVGIVGPNGTGKST-AVKILAGQLIP 73
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 27.9 bits (61), Expect = 9.1
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
Query: 29 GRPPWYNKAGEQVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVLNEEQ 88
P + + I I G A+GK+T + + V + + V + +
Sbjct: 11 SCPSFSASSEGT-RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQD 69
Query: 89 HKKAAQNEYNFDHP 102
+
Sbjct: 70 EFEELTMSQKNGGN 83
>1gpw_B Amidotransferase HISH; lyase/transferase, complex
(lyase/transferase), histidine biosynthesis,
glutaminase, glutamine amidotransferase; 2.4A
{Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A
2wjz_B
Length = 201
Score = 27.5 bits (62), Expect = 9.3
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 470 IHSIAYAF------PNVKIVTSAVDPEINE-NFYVIPGIGNFGD 506
I ++ + P + + IPG+G+FG+
Sbjct: 13 IMNLYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGE 56
>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human
tyrosine phosphatase catalytic domain, LC-PTP,
hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A
2hvl_A 2qdp_A 2qdm_A 3o4s_A 3o4t_A* 3o4u_A* 3d44_A*
3d42_A* 2a3k_A
Length = 309
Score = 27.7 bits (62), Expect = 9.4
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 114 LQRLKEGKKVDVPIYNFVTHSRETR 138
Q+LK +VD I V R R
Sbjct: 257 CQQLKARGEVD--ILGIVCQLRLDR 279
>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase,
phosphate ION, colorectal cancer alternative splicing,
coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP:
c.45.1.2
Length = 315
Score = 27.6 bits (62), Expect = 9.4
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 114 LQRLKEGKKVDVPIYNFVTHSRETR 138
L + + D I + V R R
Sbjct: 263 LGLISQDLDFD--ISDLVRCMRLQR 285
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 27.8 bits (61), Expect = 9.5
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 7/78 (8%)
Query: 48 ICGGSASGKTTVATKIIESL------NVPWVTLLSMDSFYRVLNEEQHKKAAQNEYNFDH 101
+ G +GKT K+ E ++ +F ++ E +
Sbjct: 49 LLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIG-EIARSLNIPFPRRGL 107
Query: 102 PDAFDFELLLPTLQRLKE 119
LL+ L+
Sbjct: 108 SRDEFLALLVEHLRERDL 125
>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A
{Rattus norvegicus} PDB: 2nz6_A 2cfv_A
Length = 342
Score = 27.7 bits (62), Expect = 9.7
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 114 LQRLKEGKKVDVPIYNFVTHSRETR 138
+ +++ VD +Y V R R
Sbjct: 261 IYQIENENTVD--VYGIVYDLRMHR 283
>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R;
PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase;
1.81A {Mus musculus} SCOP: c.45.1.2 PDB: 2a8b_A
Length = 297
Score = 27.6 bits (62), Expect = 9.8
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 114 LQRLKEGKKVDVPIYNFVTHSRETR 138
Q+LKE VD + V R R
Sbjct: 246 CQQLKEEGVVD--ALSIVCQLRVDR 268
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.397
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,431,514
Number of extensions: 549679
Number of successful extensions: 1737
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1687
Number of HSP's successfully gapped: 152
Length of query: 542
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 444
Effective length of database: 3,965,535
Effective search space: 1760697540
Effective search space used: 1760697540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.4 bits)