BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9619
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 298
Score = 252 bits (644), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 126/248 (50%), Positives = 177/248 (71%), Gaps = 16/248 (6%)
Query: 1 MFSKTAL-------LVPQCMQQQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTR 53
MFS+ + + PQ +Q RNMATLK I+ RLKS+KNIQKIT+SMKMV+AAKY R
Sbjct: 1 MFSRAGVAGLSAWTVQPQWIQ--VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYAR 58
Query: 54 AERELKAAKPIGAGASAFYSKAEVTTPEGTESPKELLIAVTSDRGLCGAVHTSVARWIRN 113
AERELK A+ G G+ A Y KA++ TPE + K L+I V+SDRGLCGA+H+SVA+ +++
Sbjct: 59 AERELKPARVYGVGSLALYEKADIKTPE--DKKKHLIIGVSSDRGLCGAIHSSVAKQMKS 116
Query: 114 E---LQTKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TS 168
E L G +V +I +GDK R+IL R + + ++ EVGRRPPTF DAS +A E S
Sbjct: 117 EAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNS 176
Query: 169 KYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAA 228
Y F G II+N+F+SV+SY T + PIFSL ++++A + +YD +DADV+++Y E+S+A
Sbjct: 177 GYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLAN 236
Query: 229 MLYYAMKE 236
++YY++KE
Sbjct: 237 IIYYSLKE 244
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 136/173 (78%), Gaps = 2/173 (1%)
Query: 237 GDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGK 294
G +V +I +GDK R+IL R + + ++ EVGRRPPTF DAS +A E S Y F G
Sbjct: 125 GKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGS 184
Query: 295 IIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKE 354
II+N+F+SV+SY T + PIFSL ++++A + +YD +DADV+++Y E+S+A ++YY++KE
Sbjct: 185 IIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKE 244
Query: 355 GACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407
SEQS+RMT+MDNASKNA EMI+KLTLTFNRTRQAVIT+ELIEIISGA+AL
Sbjct: 245 STTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297
>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|4ASU|G Chain G, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 273
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 164/221 (74%), Gaps = 7/221 (3%)
Query: 21 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTTP 80
ATLK I+ RLKS+KNIQKIT+SMKMV+AAKY RAERELK A+ G G+ A Y KA++ TP
Sbjct: 1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTP 60
Query: 81 EGTESPKELLIAVTSDRGLCGAVHTSVARWIRNE---LQTKGDKVLVITIGDKSRAILQR 137
E + K L+I V+SDRGLCGA+H+SVA+ +++E L G +V +I +GDK R+IL R
Sbjct: 61 E--DKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHR 118
Query: 138 LYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNKFKSVVSYTTSDLPI 195
+ + ++ EVGRRPPTF DAS +A E S Y F G II+N+F+SV+SY T + PI
Sbjct: 119 THSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPI 178
Query: 196 FSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKE 236
FSL ++++A + +YD +DADV+++Y E+S+A ++YY++KE
Sbjct: 179 FSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKE 219
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 136/173 (78%), Gaps = 2/173 (1%)
Query: 237 GDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGK 294
G +V +I +GDK R+IL R + + ++ EVGRRPPTF DAS +A E S Y F G
Sbjct: 100 GKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGS 159
Query: 295 IIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKE 354
II+N+F+SV+SY T + PIFSL ++++A + +YD +DADV+++Y E+S+A ++YY++KE
Sbjct: 160 IIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKE 219
Query: 355 GACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407
SEQS+RMT+MDNASKNA EMI+KLTLTFNRTRQAVIT+ELIEIISGA+AL
Sbjct: 220 STTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272
>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|G Chain G, Bovine Mitochondrial F1-Atpase
pdb|1NBM|G Chain G, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|G Chain G, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|G Chain G, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|G Chain G, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|G Chain G, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|G Chain G, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|G Chain G, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1W0J|G Chain G, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|G Chain G, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|G Chain G, Azide Inhibited Bovine F1-Atpase
pdb|2JIZ|G Chain G, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|N Chain N, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|G Chain G, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|N Chain N, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|G Chain G, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|N Chain N, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|G Chain G, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|G Chain G, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|P Chain P, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2XND|G Chain G, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 272
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 164/221 (74%), Gaps = 7/221 (3%)
Query: 21 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTTP 80
ATLK I+ RLKS+KNIQKIT+SMKMV+AAKY RAERELK A+ G G+ A Y KA++ TP
Sbjct: 1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTP 60
Query: 81 EGTESPKELLIAVTSDRGLCGAVHTSVARWIRNE---LQTKGDKVLVITIGDKSRAILQR 137
E + K L+I V+SDRGLCGA+H+SVA+ +++E L G +V +I +GDK R+IL R
Sbjct: 61 E--DKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHR 118
Query: 138 LYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNKFKSVVSYTTSDLPI 195
+ + ++ EVGRRPPTF DAS +A E S Y F G II+N+F+SV+SY T + PI
Sbjct: 119 THSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPI 178
Query: 196 FSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKE 236
FSL ++++A + +YD +DADV+++Y E+S+A ++YY++KE
Sbjct: 179 FSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKE 219
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 136/173 (78%), Gaps = 2/173 (1%)
Query: 237 GDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGK 294
G +V +I +GDK R+IL R + + ++ EVGRRPPTF DAS +A E S Y F G
Sbjct: 100 GKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGS 159
Query: 295 IIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKE 354
II+N+F+SV+SY T + PIFSL ++++A + +YD +DADV+++Y E+S+A ++YY++KE
Sbjct: 160 IIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKE 219
Query: 355 GACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407
SEQS+RMT+MDNASKNA EMI+KLTLTFNRTRQAVIT+ELIEIISGA+AL
Sbjct: 220 STTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272
>pdb|2F43|G Chain G, Rat Liver F1-atpase
Length = 273
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 164/221 (74%), Gaps = 7/221 (3%)
Query: 21 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTTP 80
ATLK I+ RLKS+KNIQKIT+SMKMV+AAKY RAERELK A+ G G+ A Y KAE+ P
Sbjct: 1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKAEIKGP 60
Query: 81 EGTESPKELLIAVTSDRGLCGAVHTSVARWIRNE---LQTKGDKVLVITIGDKSRAILQR 137
E + K L+I V+SDRGLCGA+H+SVA+ ++N+ L G +V+++ IG+K ++IL R
Sbjct: 61 E--DKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYR 118
Query: 138 LYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNKFKSVVSYTTSDLPI 195
+ + +++ +VGR+PPTF DAS +A E S Y F G II+N+FKSV+SY T + PI
Sbjct: 119 THSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPI 178
Query: 196 FSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKE 236
FS ++V AA + +YD +DADV+Q+Y E+++A ++YY++KE
Sbjct: 179 FSFSTVVAAENMSIYDDIDADVLQNYQEYNLANIIYYSLKE 219
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 98/173 (56%), Positives = 137/173 (79%), Gaps = 2/173 (1%)
Query: 237 GDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGK 294
G +V+++ IG+K ++IL R + + +++ +VGR+PPTF DAS +A E S Y F G
Sbjct: 100 GKEVMIVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGS 159
Query: 295 IIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKE 354
II+N+FKSV+SY T + PIFS ++V AA + +YD +DADV+Q+Y E+++A ++YY++KE
Sbjct: 160 IIFNQFKSVISYKTEEKPIFSFSTVVAAENMSIYDDIDADVLQNYQEYNLANIIYYSLKE 219
Query: 355 GACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407
SEQS+RMT+MDNASKNA +MI+KLTLTFNRTRQAVIT+ELIEIISGA+AL
Sbjct: 220 STTSEQSARMTAMDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272
>pdb|1MAB|G Chain G, Rat Liver F1-Atpase
Length = 270
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 161/218 (73%), Gaps = 7/218 (3%)
Query: 24 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTTPEGT 83
+ I+ RLKS+KNIQKIT+SMKMV+AAKY RAERELK A+ G G+ A Y KAE+ PE
Sbjct: 1 RDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKAEIKGPE-- 58
Query: 84 ESPKELLIAVTSDRGLCGAVHTSVARWIRNE---LQTKGDKVLVITIGDKSRAILQRLYG 140
+ K L+I V+SDRGLCGA+H+SVA+ ++N+ L G +V+++ IG+K ++IL R +
Sbjct: 59 DKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRTHS 118
Query: 141 NNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSL 198
+ +++ +VGR+PPTF DAS +A E S Y F G II+N+FKSV+SY T + PIFS
Sbjct: 119 DQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIFSF 178
Query: 199 ASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKE 236
++V AA + +YD +DADV+Q+Y E+++A ++YY++KE
Sbjct: 179 STVVAAENMSIYDDIDADVLQNYQEYNLANIIYYSLKE 216
Score = 211 bits (538), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 98/173 (56%), Positives = 137/173 (79%), Gaps = 2/173 (1%)
Query: 237 GDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGK 294
G +V+++ IG+K ++IL R + + +++ +VGR+PPTF DAS +A E S Y F G
Sbjct: 97 GKEVMIVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGS 156
Query: 295 IIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKE 354
II+N+FKSV+SY T + PIFS ++V AA + +YD +DADV+Q+Y E+++A ++YY++KE
Sbjct: 157 IIFNQFKSVISYKTEEKPIFSFSTVVAAENMSIYDDIDADVLQNYQEYNLANIIYYSLKE 216
Query: 355 GACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407
SEQS+RMT+MDNASKNA +MI+KLTLTFNRTRQAVIT+ELIEIISGA+AL
Sbjct: 217 STTSEQSARMTAMDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAAL 269
>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 311
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 141/246 (57%), Gaps = 23/246 (9%)
Query: 12 CMQQQT---------RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAK 62
C Q Q R ATLK + +RLKS+KNI+KIT++MK+V++ + ++AE+ +AK
Sbjct: 16 CHQAQVGILYKTNPVRTYATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAK 75
Query: 63 PIGAGASAFYSKAEVTT--PEGTES--PKELLIAVTSDRGLCGAVHTSVARWIRNEL--Q 116
+ FY AE E TE+ PKEL++A+TSD+GLCG++H+ +A+ +R L Q
Sbjct: 76 KMDEAEQLFYKNAETKNLDVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQ 135
Query: 117 TKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE----TSKYNF 172
D ++TIGDK + L R + NNI L+ N +G+ PTF +++ +A + +
Sbjct: 136 PNAD---IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTY 192
Query: 173 TSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD-SLDADVIQSYLEFSMAAMLY 231
I YN S +S+ S+ PIF+ ++ +P G ++ DA+V + E+++A +
Sbjct: 193 PKISIFYNDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQML 252
Query: 232 YAMKEG 237
AM +G
Sbjct: 253 TAMAQG 258
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 108/171 (63%), Gaps = 5/171 (2%)
Query: 242 VITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE----TSKYNFTSGKIIY 297
++TIGDK + L R + NNI L+ N +G+ PTF +++ +A + + I Y
Sbjct: 140 IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY 199
Query: 298 NKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD-SLDADVIQSYLEFSMAAMLYYAMKEGA 356
N S +S+ S+ PIF+ ++ +P G ++ DA+V + E+++A + AM +G
Sbjct: 200 NDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGY 259
Query: 357 CSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407
+E S+R +MDNASKNAG+MI + ++ +NRTRQAVIT EL++II+GAS+L
Sbjct: 260 AAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 310
>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|P Chain P, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|Y Chain Y, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|G Chain G, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|P Chain P, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|Y Chain Y, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|G Chain G, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OEE|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEH|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OFN|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3ZRY|G Chain G, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|4B2Q|G Chain G, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|GG Chain g, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|3ZIA|G Chain G, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|Q Chain Q, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 278
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 137/228 (60%), Gaps = 14/228 (6%)
Query: 21 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTT- 79
ATLK + +RLKS+KNI+KIT++MK+V++ + ++AE+ +AK + FY AE
Sbjct: 1 ATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNL 60
Query: 80 -PEGTES--PKELLIAVTSDRGLCGAVHTSVARWIRNEL--QTKGDKVLVITIGDKSRAI 134
E TE+ PKEL++A+TSD+GLCG++H+ +A+ +R L Q D ++TIGDK +
Sbjct: 61 DVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNAD---IVTIGDKIKMQ 117
Query: 135 LQRLYGNNIILAANEVGRRPPTFLDASKVAQE----TSKYNFTSGKIIYNKFKSVVSYTT 190
L R + NNI L+ N +G+ PTF +++ +A + + I YN S +S+
Sbjct: 118 LLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEP 177
Query: 191 SDLPIFSLASVTAAPKLGVYD-SLDADVIQSYLEFSMAAMLYYAMKEG 237
S+ PIF+ ++ +P G ++ DA+V + E+++A + AM +G
Sbjct: 178 SEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQG 225
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 108/171 (63%), Gaps = 5/171 (2%)
Query: 242 VITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE----TSKYNFTSGKIIY 297
++TIGDK + L R + NNI L+ N +G+ PTF +++ +A + + I Y
Sbjct: 107 IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY 166
Query: 298 NKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD-SLDADVIQSYLEFSMAAMLYYAMKEGA 356
N S +S+ S+ PIF+ ++ +P G ++ DA+V + E+++A + AM +G
Sbjct: 167 NDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGY 226
Query: 357 CSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407
+E S+R +MDNASKNAG+MI + ++ +NRTRQAVIT EL++II+GAS+L
Sbjct: 227 AAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 277
>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
Length = 278
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 137/228 (60%), Gaps = 14/228 (6%)
Query: 21 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTT- 79
ATLK + +RLKS+KNI+KIT++MK+V++ + ++AE+ +AK + FY AE
Sbjct: 1 ATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNL 60
Query: 80 -PEGTES--PKELLIAVTSDRGLCGAVHTSVARWIRNEL--QTKGDKVLVITIGDKSRAI 134
E TE+ PKEL++A+TSD+GLCG++H+ +A+ +R L Q D ++TIGDK +
Sbjct: 61 DVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNAD---IVTIGDKIKMQ 117
Query: 135 LQRLYGNNIILAANEVGRRPPTFLDASKVAQE----TSKYNFTSGKIIYNKFKSVVSYTT 190
L R + NNI L+ N +G+ PTF +++ +A + + I YN S +S+
Sbjct: 118 LLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEP 177
Query: 191 SDLPIFSLASVTAAPKLGVYD-SLDADVIQSYLEFSMAAMLYYAMKEG 237
S+ PIF+ ++ +P G ++ DA+V + E+++A + AM +G
Sbjct: 178 SEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQG 225
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 107/171 (62%), Gaps = 5/171 (2%)
Query: 242 VITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE----TSKYNFTSGKIIY 297
++TIGDK + L R + NNI L+ N +G+ PTF +++ +A + + I Y
Sbjct: 107 IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY 166
Query: 298 NKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD-SLDADVIQSYLEFSMAAMLYYAMKEGA 356
N S +S+ S+ PIF+ ++ +P G ++ DA+V + E+++A + AM +G
Sbjct: 167 NDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGY 226
Query: 357 CSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407
+E S+R +MDNASKNAG+MI + ++ +NRTRQAVIT EL++ I+GAS+L
Sbjct: 227 AAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDTITGASSL 277
>pdb|1OHH|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 100
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 54/60 (90%)
Query: 348 LYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407
++ ++ + SEQS+RMT+MDNASKNA EMI+KLTLTFNRTRQAVIT+ELIEIISGA+AL
Sbjct: 35 IHSSVAKQTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 94
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 28/30 (93%)
Query: 21 ATLKAISIRLKSVKNIQKITQSMKMVSAAK 50
ATLK I+ RLKS+KNIQKIT+SMKMV+AAK
Sbjct: 1 ATLKDITRRLKSIKNIQKITKSMKMVAAAK 30
>pdb|2QE7|G Chain G, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 286
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 9/177 (5%)
Query: 238 DKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET----SKYNFTSG 293
D+ ++ +G K R ++ G ++ + P+ + +AQ + F
Sbjct: 111 DEYVIFAVGRKGRDFFKK-RGYPVVEEVTGISD-TPSLTEIQDIAQSAIGMFADETFDKL 168
Query: 294 KIIYNKFKSVVSYTTSD---LPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYY 350
I YN+F S + + LP+ S + Y+ V++ L ++Y
Sbjct: 169 TIFYNEFVSPIVQRPVEKQLLPLTSEEVLDGPVSAYEYEPDSESVLEVLLPKYAETLIYS 228
Query: 351 AMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407
A+ + SE +RMT+M NA+ NA EM+E LTL FNR RQA IT+E+ EI++GA+AL
Sbjct: 229 ALLDAKASEFGARMTAMGNATDNATEMLETLTLQFNRARQAAITQEIAEIVAGANAL 285
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 28/187 (14%)
Query: 20 MATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKP-----------IGAGA 68
M ++ I R++SVKN ++IT++MKMV+AAK RA+ + A+P I AG
Sbjct: 1 MQGMREIKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSIAAGT 60
Query: 69 SAFYSKAEVTTP--EGTESPKELLIAVTSDRGLCGAVHTSVARWIRNELQTKG---DKVL 123
F + P E K + +TSDRGL G + ++ R + ++ + D+ +
Sbjct: 61 KDF------SHPMLEARPVKKTGYMVITSDRGLAGPYNANILRLVSKTIEERHQSKDEYV 114
Query: 124 VITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET----SKYNFTSGKIIY 179
+ +G K R ++ G ++ + P+ + +AQ + F I Y
Sbjct: 115 IFAVGRKGRDFFKK-RGYPVVEEVTGIS-DTPSLTEIQDIAQSAIGMFADETFDKLTIFY 172
Query: 180 NKFKSVV 186
N+F S +
Sbjct: 173 NEFVSPI 179
>pdb|3OAA|G Chain G, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|O Chain O, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|W Chain W, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|EE Chain e, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 286
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 49/73 (67%)
Query: 335 VIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVIT 394
++ + L + + +Y + E SEQ++RM +M A+ N G +I++L L +N+ RQA IT
Sbjct: 214 LLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASIT 273
Query: 395 RELIEIISGASAL 407
+EL EI+SGA+A+
Sbjct: 274 QELTEIVSGAAAV 286
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 17/147 (11%)
Query: 21 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKP--------IGAGASAFY 72
A K I ++ SV+N QKIT++M+MV+A+K +++ + A++P IG A +
Sbjct: 1 AGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLA---H 57
Query: 73 SKAEVTTP--EGTESPKELLIAVTSDRGLCGAVHTSVARWIRNELQT---KGDKVLVITI 127
E P E + + + V++DRGLCG ++ ++ + + E++T KG + + I
Sbjct: 58 GNLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMI 117
Query: 128 GDKSRAILQRLYGNNIILAANEVGRRP 154
G K + + G N++ +G P
Sbjct: 118 GSKGVSFFNSV-GGNVVAQVTGMGDNP 143
>pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI
Length = 230
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 17/130 (13%)
Query: 38 KITQSMKMVSAAKYTRAERELKAAKP--------IGAGASAFYSKAEVTTP--EGTESPK 87
KIT++M+MV+A+K +++ + A++P IG A + E P E + +
Sbjct: 1 KITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLA---HGNLEYKHPYLEDRDVKR 57
Query: 88 ELLIAVTSDRGLCGAVHTSVARWIRNELQT---KGDKVLVITIGDKSRAILQRLYGNNII 144
+ V++DRGLCG ++ ++ + + E++T KG + + IG K + + G N++
Sbjct: 58 VGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSV-GGNVV 116
Query: 145 LAANEVGRRP 154
+G P
Sbjct: 117 AQVTGMGDNP 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,895,205
Number of Sequences: 62578
Number of extensions: 365870
Number of successful extensions: 1055
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 33
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)