Query psy9619
Match_columns 407
No_of_seqs 184 out of 1489
Neff 5.9
Searched_HMMs 46136
Date Sat Aug 17 00:23:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0224 AtpG F0F1-type ATP syn 100.0 1.4E-72 2.9E-77 549.7 29.1 268 24-407 1-286 (287)
2 PRK13427 F0F1 ATP synthase sub 100.0 4.6E-70 1E-74 536.6 33.2 272 20-407 1-288 (289)
3 PRK13422 F0F1 ATP synthase sub 100.0 1.6E-69 3.6E-74 534.8 33.3 282 20-407 1-298 (298)
4 PRK14111 F0F1 ATP synthase sub 100.0 1E-69 2.2E-74 534.3 30.7 272 20-407 1-288 (290)
5 PRK13425 F0F1 ATP synthase sub 100.0 2.2E-69 4.8E-74 532.2 32.2 272 20-407 1-289 (291)
6 PRK13423 F0F1 ATP synthase sub 100.0 2E-69 4.3E-74 531.9 31.1 272 20-407 1-286 (288)
7 KOG1531|consensus 100.0 2.6E-70 5.6E-75 521.2 24.0 278 14-407 22-303 (304)
8 PRK13424 F0F1 ATP synthase sub 100.0 6.4E-69 1.4E-73 528.9 32.8 272 20-407 1-289 (291)
9 PF00231 ATP-synt: ATP synthas 100.0 2.2E-69 4.7E-74 531.5 28.5 271 21-407 1-290 (290)
10 PRK13426 F0F1 ATP synthase sub 100.0 8.9E-69 1.9E-73 527.9 32.6 271 20-406 1-290 (291)
11 PRK14110 F0F1 ATP synthase sub 100.0 8.4E-69 1.8E-73 528.1 32.4 271 22-407 5-290 (291)
12 TIGR01146 ATPsyn_F1gamma ATP s 100.0 2.5E-68 5.3E-73 523.7 32.8 272 20-407 1-287 (287)
13 PRK05621 F0F1 ATP synthase sub 100.0 8.6E-68 1.9E-72 519.0 32.7 272 20-407 1-284 (284)
14 TIGR03323 alt_F1F0_F1_gam alte 100.0 5.5E-67 1.2E-71 513.9 31.1 267 26-407 1-285 (285)
15 KOG1531|consensus 99.8 6.7E-20 1.4E-24 176.1 0.7 114 172-316 186-299 (304)
16 COG0224 AtpG F0F1-type ATP syn 99.8 7.5E-20 1.6E-24 179.4 -0.8 127 158-315 148-281 (287)
17 PRK13427 F0F1 ATP synthase sub 99.7 4.7E-18 1E-22 167.8 -0.9 127 159-316 153-284 (289)
18 PRK13423 F0F1 ATP synthase sub 99.7 6.2E-18 1.3E-22 166.8 -0.7 127 159-316 152-282 (288)
19 PRK14110 F0F1 ATP synthase sub 99.7 7.5E-18 1.6E-22 166.5 -0.7 127 159-316 155-286 (291)
20 PRK13422 F0F1 ATP synthase sub 99.7 1.1E-17 2.4E-22 165.8 -0.7 76 210-316 217-294 (298)
21 PRK14111 F0F1 ATP synthase sub 99.6 1.2E-17 2.5E-22 165.0 -0.8 127 159-316 155-284 (290)
22 TIGR03323 alt_F1F0_F1_gam alte 99.6 1.2E-17 2.6E-22 164.6 -0.9 127 159-316 142-281 (285)
23 PRK13425 F0F1 ATP synthase sub 99.6 1.3E-17 2.8E-22 164.8 -0.8 127 159-316 156-285 (291)
24 PRK13426 F0F1 ATP synthase sub 99.6 1.6E-17 3.5E-22 164.1 -0.7 127 159-316 153-287 (291)
25 PRK13424 F0F1 ATP synthase sub 99.6 1.9E-17 4.2E-22 163.5 -0.6 127 159-316 153-285 (291)
26 TIGR01146 ATPsyn_F1gamma ATP s 99.6 2.3E-17 5E-22 162.6 -1.0 127 159-316 152-283 (287)
27 PRK05621 F0F1 ATP synthase sub 99.6 1.1E-16 2.4E-21 157.5 -0.8 127 159-316 151-280 (284)
28 PF00231 ATP-synt: ATP synthas 99.6 4.4E-17 9.6E-22 160.6 -4.5 127 158-315 151-285 (290)
29 PF00700 Flagellin_C: Bacteria 70.0 29 0.00063 27.6 7.6 51 353-403 11-61 (86)
30 PF13778 DUF4174: Domain of un 27.9 1.1E+02 0.0024 26.3 4.6 52 85-136 41-94 (118)
31 smart00216 VWD von Willebrand 27.1 21 0.00046 31.5 0.0 11 96-106 142-152 (162)
32 PF03598 CdhC: CO dehydrogenas 25.9 31 0.00068 36.1 1.0 23 90-112 200-223 (411)
33 TIGR00316 cdhC CO dehydrogenas 25.5 1.1E+02 0.0023 32.7 4.7 23 90-112 199-222 (458)
34 PRK04456 acetyl-CoA decarbonyl 24.4 39 0.00085 35.8 1.4 23 90-112 202-225 (463)
35 cd01462 VWA_YIEM_type VWA YIEM 23.8 1.4E+02 0.0031 25.7 4.7 42 89-132 96-137 (152)
36 KOG3287|consensus 23.6 1.6E+02 0.0036 28.5 5.3 40 22-63 154-193 (236)
37 PF01866 Diphthamide_syn: Puta 23.6 1.5E+02 0.0032 29.7 5.3 48 86-137 210-257 (307)
38 PF00094 VWD: von Willebrand f 22.7 31 0.00066 29.8 0.2 11 96-106 138-148 (159)
39 PF02870 Methyltransf_1N: 6-O- 22.2 42 0.00092 26.1 0.9 12 90-101 14-25 (77)
No 1
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=1.4e-72 Score=549.66 Aligned_cols=268 Identities=34% Similarity=0.536 Sum_probs=238.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhcc-----cCCC---CCCCCCcEEEEEEcC
Q psy9619 24 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAE-----VTTP---EGTESPKELLIAVTS 95 (407)
Q Consensus 24 keir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~-----~~~p---~~~~~~~~~~IvitS 95 (407)
++||+||+||++|+||||||+|||+||++|+|.++.+.+||++.+.+++.++. ..|| ..++.+++++|||||
T Consensus 1 keik~kI~Svk~t~KITkAM~mVaasKl~kaq~~~~a~~pY~e~i~~vl~~l~~~~~~~~~p~~~~~~e~kr~~~IviTS 80 (287)
T COG0224 1 KEIRRKIKSVKNTQKITKAMEMVAASKLRKAQERAEAARPYAEKIRKVLGHLASANLELDHPLLKPTREVKRVLYIVITS 80 (287)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcccccCCcccccccCCCceEEEEEec
Confidence 58999999999999999999999999999999999999999999999998863 2456 335688899999999
Q ss_pred CccccchhhHHHHHHHHHHHHhc---CCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHHhhhccc
Q psy9619 96 DRGLCGAVHTSVARWIRNELQTK---GDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNF 172 (407)
Q Consensus 96 DrGLCG~fN~~i~k~~~~~l~~~---~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~~~~~~~ 172 (407)
|||||||||+||+|.+...++.. +.++.+++||+||.++|++ .|.++..++.+++ +.|+|+.+..+++.+++.
T Consensus 81 DrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~iG~Kg~~~f~~-~~~~i~~~~~~l~-~~p~~~~~~~i~~~~~~~-- 156 (287)
T COG0224 81 DRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKK-RGYNILESFTGLG-DNPSFEEAIQIADKILDA-- 156 (287)
T ss_pred CcchhhhhhHHHHHHHHHHHHhhhccCCceEEEEEchHHHHHHHh-cCcchhhHhhccc-cCCCHHHHHHHHHHHHHH--
Confidence 99999999999999999887653 6678899999999999998 5999999999998 559999999988776430
Q ss_pred ceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcchhHHH
Q psy9619 173 TSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRAI 252 (407)
Q Consensus 173 ~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k~~~i 252 (407)
T Consensus 157 -------------------------------------------------------------------------------- 156 (287)
T COG0224 157 -------------------------------------------------------------------------------- 156 (287)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeecccccccccccccccccccccc-----CC--CC
Q psy9619 253 LQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTA-----AP--KL 325 (407)
Q Consensus 253 l~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~~~-----~~--~~ 325 (407)
| ..+.+|+++++||+|.+.++++|+..+|+|++..+. .+ ..
T Consensus 157 ----~----------------------------~~g~~d~v~l~yn~f~n~~sq~~~~~~llP~~~~~~~~~~~~~~~~~ 204 (287)
T COG0224 157 ----F----------------------------LEGEIDELYLVYNKFKNALSQEPTVQQLLPLDKIEDEAEEEEPGLWD 204 (287)
T ss_pred ----H----------------------------hCCCCceEEEEecccccceeeeeeeEEEecCCcccchhhhccccccc
Confidence 0 013788888888888888888888888888864321 12 25
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhhc
Q psy9619 326 GVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGAS 405 (407)
Q Consensus 326 ~~~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVsGa~ 405 (407)
+.|||+++++++.|+|.|+.+.||+|++||.||||+|||+||++|||||+|||++|++.|||+||++|||||+|||+||+
T Consensus 205 ~efEpd~e~il~~Ll~~Y~~~~iy~alles~asE~aaRm~AM~~ATdNA~~lI~~l~l~yNk~RQa~ITqEL~EIV~Ga~ 284 (287)
T COG0224 205 YEFEPDAEEILETLLPRYLESQLYGALLESKASEHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIVGGAE 284 (287)
T ss_pred eeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy9619 406 AL 407 (407)
Q Consensus 406 Al 407 (407)
||
T Consensus 285 AL 286 (287)
T COG0224 285 AL 286 (287)
T ss_pred hh
Confidence 97
No 2
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=4.6e-70 Score=536.56 Aligned_cols=272 Identities=29% Similarity=0.410 Sum_probs=231.3
Q ss_pred CccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhcc-----cCCC--CCCC-CCcEEEE
Q psy9619 20 MATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAE-----VTTP--EGTE-SPKELLI 91 (407)
Q Consensus 20 Ma~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~-----~~~p--~~~~-~~~~~~I 91 (407)
|+++++||+||+||++|+|||+||||||+||+|||++++++.+||++.+.+++.++. ..+| ..++ .+++++|
T Consensus 1 Ma~lkeik~RI~sv~st~kIT~AMkmVAasklrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~i 80 (289)
T PRK13427 1 MATPREIKKRINSVKNTRKITRTMEMVSTAKSKKATDRVNAAHPYANKIKELVSSLASLEGVVHSPYLRRPEKIRTVALL 80 (289)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhCcCcccCCCcccCCccCceEEE
Confidence 899999999999999999999999999999999999999999999999999988842 1345 2232 3557899
Q ss_pred EEcCCccccchhhHHHHHHHHHHHHh---cCCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHHhh
Q psy9619 92 AVTSDRGLCGAVHTSVARWIRNELQT---KGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETS 168 (407)
Q Consensus 92 vitSDrGLCG~fN~~i~k~~~~~l~~---~~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~~~ 168 (407)
|||||||||||||++|+|.+.+.+++ .++++.+++||+||.++|++ +|.++...+.+++ .+|+|+++..+++.++
T Consensus 81 vitSDrGLcG~fN~~v~k~~~~~i~~~~~~~~~~~~~~vG~kg~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~i~~~l~ 158 (289)
T PRK13427 81 IITANRGLCGGFNSNLNRMAKARIAELKKKGVNVELHIVGKKGISFFKF-AGEKAEKTYTHID-DKSGYKEAEELANLFM 158 (289)
T ss_pred EEeCCCCccccccHHHHHHHHHHHHHHHhCCCcEEEEEEeHHHHHHHHH-cCCCceeeecccC-CccCHHHHHHHHHHHH
Confidence 99999999999999999999998864 35678899999999999986 5889999998887 6789999998886663
Q ss_pred hcccceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcch
Q psy9619 169 KYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDK 248 (407)
Q Consensus 169 ~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k 248 (407)
+.
T Consensus 159 ~~------------------------------------------------------------------------------ 160 (289)
T PRK13427 159 ER------------------------------------------------------------------------------ 160 (289)
T ss_pred HH------------------------------------------------------------------------------
Confidence 21
Q ss_pred hHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccccccccc---c-C-C
Q psy9619 249 SRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVT---A-A-P 323 (407)
Q Consensus 249 ~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~~---~-~-~ 323 (407)
| . .+.+|+++++||+|.++++++|.+.+|||++... . . .
T Consensus 161 --------~---------------------------~-~~~~d~v~viy~~f~s~~~q~~~~~~llP~~~~~~~~~~~~~ 204 (289)
T PRK13427 161 --------F---------------------------A-NESVDAVEIASTVYYSAASQKPETTRVLPLEPPTAAAEGSVQ 204 (289)
T ss_pred --------H---------------------------H-cCCCCEEEEEecccccceecceeeEEeeCCCcccccccccCC
Confidence 0 0 0156667777777777667777777777764221 1 1 1
Q ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhh
Q psy9619 324 KLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISG 403 (407)
Q Consensus 324 ~~~~~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVsG 403 (407)
..+.|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||||
T Consensus 205 ~~~~~ep~~~~vl~~l~~~yl~~~ly~alles~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~EL~EIv~G 284 (289)
T PRK13427 205 DDVVYEPSPEAILESLLPLVVKTAFLKAILEANASEQIARRIAMKSATDAASEMIKLLTRGYNRVRQAKITQEISEIVGG 284 (289)
T ss_pred CceEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q psy9619 404 ASAL 407 (407)
Q Consensus 404 a~Al 407 (407)
|+||
T Consensus 285 aeal 288 (289)
T PRK13427 285 ADAL 288 (289)
T ss_pred Hhhc
Confidence 9997
No 3
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=1.6e-69 Score=534.75 Aligned_cols=282 Identities=26% Similarity=0.349 Sum_probs=225.4
Q ss_pred CccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhcc-----cCCC--CCCCCCcEEEEE
Q psy9619 20 MATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAE-----VTTP--EGTESPKELLIA 92 (407)
Q Consensus 20 Ma~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~-----~~~p--~~~~~~~~~~Iv 92 (407)
|+++++||+||+||+||+|||+||||||+||+|||++++.+.+||++.+.+++.++. ..+| ..++.+++++||
T Consensus 1 Ma~l~eik~RI~Sv~~t~kIT~AMkmVAasKlrka~~~~~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Iv 80 (298)
T PRK13422 1 MSNAREIRSKVQSVKNTQKITGAMELVAASKMRGAIVKMNNVRPYVESANTIIKNVTAASIDYPNPYLFDRDVKRVGYIV 80 (298)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCccCCcccccCCCceEEEEE
Confidence 899999999999999999999999999999999999999999999999999887752 1144 233345677999
Q ss_pred EcCCccccchhhHHHHHHHHHHHHh---cCCcEEEEEEccccHHHHHHhhCCceeEe--ecccCCCCCChhhhHHHHHHh
Q psy9619 93 VTSDRGLCGAVHTSVARWIRNELQT---KGDKVLVITIGDKSRAILQRLYGNNIILA--ANEVGRRPPTFLDASKVAQET 167 (407)
Q Consensus 93 itSDrGLCG~fN~~i~k~~~~~l~~---~~~~~~li~IG~Kg~~~l~~~~~~~i~~~--~~~~~~~~~~~~~a~~i~~~~ 167 (407)
||||||||||||++|+|.+.+.+++ .+.++.+++||+||.++|.+.++.++... +.+.+ ++|+|+++..+++.+
T Consensus 81 itSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~iG~K~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~ 159 (298)
T PRK13422 81 TSTDRGLCGGLNINLFKHVLKEIKNNIEDRVGVDVCVIGSKAENFFAKLKDVNIVATAHYNDKD-KEGSIRAIGGAVKVM 159 (298)
T ss_pred EeCCcccccchhHHHHHHHHHHHHHHHhCCCceEEEEEChhHHHHHHHhcCCCceeeeeeccCC-CCCCHHHHHHHHHHH
Confidence 9999999999999999999988764 35677899999999999986557787777 54433 577999999988554
Q ss_pred ----hhcccceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Q psy9619 168 ----SKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVI 243 (407)
Q Consensus 168 ----~~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~ 243 (407)
.+.+||+++++||+|+|.++|.|...++||++...
T Consensus 160 ~~~~~~~~~d~v~iiy~~f~s~~~q~~~~~~llP~~~~~----------------------------------------- 198 (298)
T PRK13422 160 LDKFTAGEIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIF----------------------------------------- 198 (298)
T ss_pred HHHHHcCCCCEEEEEeccccCCcccceEEEEeeCCCccc-----------------------------------------
Confidence 33466666666666666666666666666532000
Q ss_pred hhcchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccccccccccCC
Q psy9619 244 TIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAP 323 (407)
Q Consensus 244 ~ig~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~~~~~ 323 (407)
..+... .+. . ......
T Consensus 199 ---------------------------------------------~~~~~~------~~~----~---------~~~~~~ 214 (298)
T PRK13422 199 ---------------------------------------------SAEEIK------ANK----E---------KATKGH 214 (298)
T ss_pred ---------------------------------------------chhhhc------ccc----c---------ccccCC
Confidence 000000 000 0 000001
Q ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhh
Q psy9619 324 KLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISG 403 (407)
Q Consensus 324 ~~~~~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVsG 403 (407)
.++.|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+||+++|+++|||+||++||+||+|||||
T Consensus 215 ~~~~~ep~~~~il~~L~~~yl~~~ly~al~eS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~Ei~EIvsG 294 (298)
T PRK13422 215 WDYIYERDIEEVLNALCIRYIEAQVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEICSG 294 (298)
T ss_pred CCeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 13689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q psy9619 404 ASAL 407 (407)
Q Consensus 404 a~Al 407 (407)
|+|+
T Consensus 295 aeA~ 298 (298)
T PRK13422 295 AAAV 298 (298)
T ss_pred hhcC
Confidence 9985
No 4
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=1e-69 Score=534.32 Aligned_cols=272 Identities=32% Similarity=0.463 Sum_probs=232.7
Q ss_pred CccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhccc-------CCC--CCCC-CCcEE
Q psy9619 20 MATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEV-------TTP--EGTE-SPKEL 89 (407)
Q Consensus 20 Ma~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~~-------~~p--~~~~-~~~~~ 89 (407)
|+++++||+||+||++|+|||+||||||++|+|||++++.+.+||++.+.+++.++.. .+| ..++ .++++
T Consensus 1 Ma~lkeik~RI~Sv~s~~kITkAMkmvAasklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 80 (290)
T PRK14111 1 MPSTREIRRRIRSVKNTAQITRAMEMVSASKMRRAQRNVLATRPYADRIRDVMGDLTARTVGAARVGPLLEKRPTVKRVA 80 (290)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcccCccccCcccccCccccceE
Confidence 8999999999999999999999999999999999999999999999999999888521 134 2333 46678
Q ss_pred EEEEcCCccccchhhHHHHHHHHHHHHhc---CCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHH
Q psy9619 90 LIAVTSDRGLCGAVHTSVARWIRNELQTK---GDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE 166 (407)
Q Consensus 90 ~IvitSDrGLCG~fN~~i~k~~~~~l~~~---~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~ 166 (407)
+|||||||||||+||++|+|.+.+.+++. ++++.+++||+||.++|++ +|.++...+.+.+ +.|+|+++..+++.
T Consensus 81 ~IvitSDrGLCG~fN~~l~k~~~~~i~~~~~~~~~~~l~~vG~Kg~~~l~~-~~~~i~~~~~~~~-~~p~~~~~~~i~~~ 158 (290)
T PRK14111 81 LILVTPDRGLAGSLNANVLRRAIRFITDERSMGRTVDVIAIGRKGRDFMVR-TGQALVAEFTRLG-DAPKLEAILPVATS 158 (290)
T ss_pred EEEEeCCCCccccccHHHHHHHHHHHHHHHhCCCceEEEEEehHHHHHHHH-cCCCceeeeecCC-CCCCHHHHHHHHHH
Confidence 99999999999999999999999988642 5677899999999999985 5899988888877 66799999888866
Q ss_pred hhhcccceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhc
Q psy9619 167 TSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIG 246 (407)
Q Consensus 167 ~~~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig 246 (407)
+++. |
T Consensus 159 ~~~~-~-------------------------------------------------------------------------- 163 (290)
T PRK14111 159 AING-F-------------------------------------------------------------------------- 163 (290)
T ss_pred HHHH-H--------------------------------------------------------------------------
Confidence 5321 0
Q ss_pred chhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccccccccccC--C-
Q psy9619 247 DKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAA--P- 323 (407)
Q Consensus 247 ~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~~~~--~- 323 (407)
.. +.+|+++++||+|.+.++++|.+.+++|++..... .
T Consensus 164 --------------------------------------~~-~~~d~v~iiy~~f~s~~~~~~~~~~llP~~~~~~~~~~~ 204 (290)
T PRK14111 164 --------------------------------------QS-GKYDEVYVLYSEFINTLVQRPTIKQLLPIEPPEISTTTV 204 (290)
T ss_pred --------------------------------------Hc-CCCCEEEEEecccccceeeeeeEEEecCCCccccccccc
Confidence 00 16777777777777777777777777777532211 1
Q ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhh
Q psy9619 324 KLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISG 403 (407)
Q Consensus 324 ~~~~~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVsG 403 (407)
..++|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||||
T Consensus 205 ~~~~~ep~~~~il~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIVsG 284 (290)
T PRK14111 205 VDYTYEPSPEEVLRALLPRFVEVQLYQAVLESIASEHSARMVAMRNATDNAKELVRDLTLTYNKARQAAITKEVSEIASG 284 (290)
T ss_pred cceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q psy9619 404 ASAL 407 (407)
Q Consensus 404 a~Al 407 (407)
|+||
T Consensus 285 aeal 288 (290)
T PRK14111 285 AAAL 288 (290)
T ss_pred HHHh
Confidence 9986
No 5
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=2.2e-69 Score=532.25 Aligned_cols=272 Identities=32% Similarity=0.484 Sum_probs=233.1
Q ss_pred CccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhcc-----cCCC--CCCC-CCcEEEE
Q psy9619 20 MATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAE-----VTTP--EGTE-SPKELLI 91 (407)
Q Consensus 20 Ma~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~-----~~~p--~~~~-~~~~~~I 91 (407)
|+++++||+||+||++|+|||+||||||++|+||+++++.+.+||++.+.+++.++. ..+| ..++ .++.++|
T Consensus 1 M~~l~~ik~RI~sv~~t~kIT~AMkmVA~aklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 80 (291)
T PRK13425 1 MPTLKDIRVRIKGVKSTQQVTKAMKMVAAAKLRRAQERAIMARPYAAKLKEMLGSLSAKVDTSLNPLLSPRSEVNKVLVI 80 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCcccCccccccccCccEEEE
Confidence 899999999999999999999999999999999999999999999999999988852 1244 2232 3567899
Q ss_pred EEcCCccccchhhHHHHHHHHHHHHh------cCCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHH
Q psy9619 92 AVTSDRGLCGAVHTSVARWIRNELQT------KGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQ 165 (407)
Q Consensus 92 vitSDrGLCG~fN~~i~k~~~~~l~~------~~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~ 165 (407)
|||||||||||||++|+|.+.+.+++ .++++.+++||+||.++|.+ +|.++...+.+.. ++|+|+.+..+++
T Consensus 81 vitSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~~~~l~~iG~Kg~~~~~~-~~~~i~~~~~~~~-~~~~~~~a~~i~~ 158 (291)
T PRK13425 81 LITSDRGLCGAFNTNIIKLAQKVIHEDYAALHAKGGVSMICAGTRGFDFFRK-RGYNIVKGYPGVF-QNLDFSVAKEIAE 158 (291)
T ss_pred EEeCCCcccccchHHHHHHHHHHHHHhhhhhccCCceEEEEeeHHHHHHHHH-cCCCceeeecCcC-CCCCHHHHHHHHH
Confidence 99999999999999999999998853 35577899999999999985 5899999998887 6779999999886
Q ss_pred HhhhcccceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhh
Q psy9619 166 ETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITI 245 (407)
Q Consensus 166 ~~~~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~i 245 (407)
.+.+.
T Consensus 159 ~~~~~--------------------------------------------------------------------------- 163 (291)
T PRK13425 159 TASGM--------------------------------------------------------------------------- 163 (291)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 66320
Q ss_pred cchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccccccccc--cC-
Q psy9619 246 GDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVT--AA- 322 (407)
Q Consensus 246 g~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~~--~~- 322 (407)
| . .+.+|++.++||+|.+.++++|..++|||+++.. ..
T Consensus 164 -----------~---------------------------~-~~~~d~v~viy~~f~~~~~~~~~~~~llP~~~~~~~~~~ 204 (291)
T PRK13425 164 -----------Y---------------------------L-RGEVDKVVVVYNEFKSVLAPNLKSEVLLPITPEKPGAEG 204 (291)
T ss_pred -----------H---------------------------H-cCCCCEEEEEeccceeceeeeEEEEEeeCCCcccccccc
Confidence 0 0 0167777777777777777777777777775322 11
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHh
Q psy9619 323 PKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIIS 402 (407)
Q Consensus 323 ~~~~~~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVs 402 (407)
...+.|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||+
T Consensus 205 ~~~~~~eP~~~~il~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~Ei~EIv~ 284 (291)
T PRK13425 205 GSDYIYEPSPAAIIDELVPKHLNTQVWRMMLESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIVA 284 (291)
T ss_pred CCCeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCC
Q psy9619 403 GASAL 407 (407)
Q Consensus 403 Ga~Al 407 (407)
||+||
T Consensus 285 Ga~al 289 (291)
T PRK13425 285 GADAL 289 (291)
T ss_pred HHHHh
Confidence 99986
No 6
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=2e-69 Score=531.88 Aligned_cols=272 Identities=38% Similarity=0.496 Sum_probs=232.7
Q ss_pred CccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhcc-----cCCC--CCCCCCcEEEEE
Q psy9619 20 MATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAE-----VTTP--EGTESPKELLIA 92 (407)
Q Consensus 20 Ma~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~-----~~~p--~~~~~~~~~~Iv 92 (407)
|+++++||+||+||++|+|||+||||||++|+||+++++.+.+||++.+.+++.++. ..+| ..++.+++++||
T Consensus 1 M~~l~~ik~RI~Sv~~t~kItkAMkmvAaaklrka~~~~~~~~~y~~~i~~~~~~l~~~~~~~~~p~~~~~~~~~~~~Iv 80 (288)
T PRK13423 1 MASLKDIKKRIVSVKNTRQITKAMKMVSAAKLRRAQENVVAARPYAAKLGEVLGSLAARAGEDAHPLLVPREVKKALLVV 80 (288)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCcccCcccccCCCceEEEEE
Confidence 899999999999999999999999999999999999999999999999999988752 1244 233346678999
Q ss_pred EcCCccccchhhHHHHHHHHHHHHh---cCCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHHhhh
Q psy9619 93 VTSDRGLCGAVHTSVARWIRNELQT---KGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSK 169 (407)
Q Consensus 93 itSDrGLCG~fN~~i~k~~~~~l~~---~~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~~~~ 169 (407)
|||||||||+||++|+|.+.+.+++ .++++.+++||+||.++|.+ +|.++...+.+.. +.|+|+.+..+++.+++
T Consensus 81 itSDrGLCG~fN~~i~k~~~~~i~~~~~~~~~~~l~~vG~k~~~~~~~-~~~~i~~~~~~~~-~~~~~~~~~~i~~~l~~ 158 (288)
T PRK13423 81 VTSDRGLCGGFNSNLCKAAERFLKENKDEFEEISLTTVGRKGREFLKN-RGLIIRKNYGGVV-ANLTYETAALLAQELIE 158 (288)
T ss_pred EeCCCCCcchhhHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHH-cCCCceeeecCcC-CCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999864 25577899999999999986 5888988888777 67799999888876632
Q ss_pred cccceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcchh
Q psy9619 170 YNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKS 249 (407)
Q Consensus 170 ~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k~ 249 (407)
. |
T Consensus 159 ~-~----------------------------------------------------------------------------- 160 (288)
T PRK13423 159 G-Y----------------------------------------------------------------------------- 160 (288)
T ss_pred H-H-----------------------------------------------------------------------------
Confidence 1 0
Q ss_pred HHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccccccccccC--CC--C
Q psy9619 250 RAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAA--PK--L 325 (407)
Q Consensus 250 ~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~~~~--~~--~ 325 (407)
. .+.+|++.++||+|.++++++|.+.+|+|++..... +. .
T Consensus 161 -----------------------------------~-~~~~d~v~iiy~~f~n~~~q~~~~~~llP~~~~~~~~~~~~~~ 204 (288)
T PRK13423 161 -----------------------------------L-AGEYDEVYLVYNEFKSVMSQDITVQQLLPIDPPEAADDEYLPE 204 (288)
T ss_pred -----------------------------------h-cCCCCEEEEEecccccccccceeEEEecCCCcccccccccccc
Confidence 0 026777777777777777777777777777532211 11 3
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhhc
Q psy9619 326 GVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGAS 405 (407)
Q Consensus 326 ~~~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVsGa~ 405 (407)
+.|||+++++|+.++|.|+++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+||||||+
T Consensus 205 ~~~ep~~~~vl~~l~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~EL~EIvsGae 284 (288)
T PRK13423 205 YIYEPSRDALLAELLPKHVEVQIYRALLESVASEHGARMTAMDSATKNATEMIGKLTLQYNRARQAAITTELMEIVSGAE 284 (288)
T ss_pred eeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy9619 406 AL 407 (407)
Q Consensus 406 Al 407 (407)
||
T Consensus 285 al 286 (288)
T PRK13423 285 AL 286 (288)
T ss_pred Hh
Confidence 86
No 7
>KOG1531|consensus
Probab=100.00 E-value=2.6e-70 Score=521.23 Aligned_cols=278 Identities=62% Similarity=0.899 Sum_probs=243.7
Q ss_pred hccccCCccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhcccCCC--CCCCCCcEEEE
Q psy9619 14 QQQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTTP--EGTESPKELLI 91 (407)
Q Consensus 14 ~~~~~~Ma~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~~~~p--~~~~~~~~~~I 91 (407)
..|.|+||+||+|+.||+|||||||||++|||||++|++|||+++.+.|||.++..+++..++.+.| +..+.+|.++|
T Consensus 22 ~~q~~~~Atlkei~~RlkSVKNiQKITksMKmVAaaK~~rAer~~~~ar~~~~~~~~~~~~~d~~~p~~e~~~~kK~~lV 101 (304)
T KOG1531|consen 22 AIQARGFATLKEIRIRLKSVKNIQKITKSMKMVAAAKYARAERALKAARPYGEGAVEFFKNIDIDVPLTEEGEVKKVLLV 101 (304)
T ss_pred hhhhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHhhccCCCCccccccccceEEE
Confidence 5688889999999999999999999999999999999999999999999999999999999877777 45667899999
Q ss_pred EEcCCccccchhhHHHHHHHHHHHHhc--CCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHHhhh
Q psy9619 92 AVTSDRGLCGAVHTSVARWIRNELQTK--GDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSK 169 (407)
Q Consensus 92 vitSDrGLCG~fN~~i~k~~~~~l~~~--~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~~~~ 169 (407)
++|||||||||+|+.|.|.++..++.. ++++.+++||+|++..|.|.++.+|...++++|+.||+|++++-+++.+++
T Consensus 102 ~vtsDrGLCGgihssi~K~~r~~l~~~~~~~e~~vv~iGdK~ra~l~R~~~~~i~ls~~eig~~pptf~~asvia~~il~ 181 (304)
T KOG1531|consen 102 AVTSDRGLCGGIHSSIAKKARRELNDLKGGKEVRVVIIGDKIRAILLRLHPNSILLSINEIGRAPPTFEDASVIADEILL 181 (304)
T ss_pred EEecCCccccchhHHHHHHHHHHHHhccCCCceEEEEEchhhhhheeecCchhhhhhHhhcCCCCCcHHHHHHHHHHHHh
Confidence 999999999999999999999999876 689999999999999999999999999999999999999999999998854
Q ss_pred cccceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcchh
Q psy9619 170 YNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKS 249 (407)
Q Consensus 170 ~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k~ 249 (407)
.
T Consensus 182 ~------------------------------------------------------------------------------- 182 (304)
T KOG1531|consen 182 S------------------------------------------------------------------------------- 182 (304)
T ss_pred h-------------------------------------------------------------------------------
Confidence 2
Q ss_pred HHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccccccccccCCCCCcCC
Q psy9619 250 RAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 329 (407)
Q Consensus 250 ~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~~~~~~~~~~e 329 (407)
++++|+++++||||++.++++|+..+|||+....+.+....|+
T Consensus 183 -------------------------------------~~e~d~~~ivyNkF~SvVs~e~~~~~il~l~~i~~s~~l~~~d 225 (304)
T KOG1531|consen 183 -------------------------------------GYEFDKGSIVYNKFKSVVSYETSEKPILPLETIEESESLSCYD 225 (304)
T ss_pred -------------------------------------hccccceEEEeecchhheeeccccccccCHHHhcccccccchh
Confidence 1245555555555555555555555555555443333333355
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhhcCC
Q psy9619 330 SLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407 (407)
Q Consensus 330 ~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVsGa~Al 407 (407)
.-.+++++.|+|+||...+|.++.||.+||++|||+||+||++||.|||++|++.|||+|||.||.||+|||+||+||
T Consensus 226 ~iddev~q~~~e~~la~~I~~am~Es~~SE~saRm~AMdnaSkNAgemi~kltl~yNRtRQA~IT~ELieIisGA~al 303 (304)
T KOG1531|consen 226 SIDDEVLQSLMEYSLANQIYYAMKESATSELSARMNAMDNASKNAGEMIDKLTLTYNRTRQAVITNELIEIISGASAL 303 (304)
T ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCHHHHHHHHhhhhhhhcccchHHHHHHHHhhhhhc
Confidence 556788899999999999999999999999999999999999999999999999999999999999999999999987
No 8
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=6.4e-69 Score=528.92 Aligned_cols=272 Identities=28% Similarity=0.427 Sum_probs=230.8
Q ss_pred CccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhcc-----cCCC--CCCC-CCcEEEE
Q psy9619 20 MATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAE-----VTTP--EGTE-SPKELLI 91 (407)
Q Consensus 20 Ma~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~-----~~~p--~~~~-~~~~~~I 91 (407)
|+++++||+||+||++|+|||+||||||++|+||+++++.+.+||++.+..++.++. ..+| ..++ .++.++|
T Consensus 1 M~~l~eik~RI~sv~~~~kIt~AMkmVAasklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~I 80 (291)
T PRK13424 1 MPSLKDVKVKIAGVKKTKQITKAMNMVASAKLRGAQQRIERFRPYAEKFYDMLGDLASRADSSAHPLLEVREEIKTCGIV 80 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCcccCcccccccccCcEEEE
Confidence 899999999999999999999999999999999999999999999999999987752 1244 2232 3557799
Q ss_pred EEcCCccccchhhHHHHHHHHHHHHh---cCCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHHhh
Q psy9619 92 AVTSDRGLCGAVHTSVARWIRNELQT---KGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETS 168 (407)
Q Consensus 92 vitSDrGLCG~fN~~i~k~~~~~l~~---~~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~~~ 168 (407)
||||||||||+||++|+|.+.+++++ .++++.+++||+||.++|.+ +|.++...+.+.. +.|+|+.+..+++.++
T Consensus 81 vitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~vG~K~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~ 158 (291)
T PRK13424 81 LITSDRGLCGSFNANLINAALKLAKQKTAEGKTVKFYCVGKKGRDAIRK-TDFEIVTAYADQM-TSFDFQLANSIGLEVI 158 (291)
T ss_pred EEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEeeHHHHHHHHH-cCCCeeEeeccCC-CCCCHHHHHHHHHHHH
Confidence 99999999999999999999999864 35677899999999999985 5899999998887 6779999998886653
Q ss_pred hcccceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcch
Q psy9619 169 KYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDK 248 (407)
Q Consensus 169 ~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k 248 (407)
+.
T Consensus 159 ~~------------------------------------------------------------------------------ 160 (291)
T PRK13424 159 DG------------------------------------------------------------------------------ 160 (291)
T ss_pred HH------------------------------------------------------------------------------
Confidence 21
Q ss_pred hHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeecccccccccccccccccccc-c-c-C---
Q psy9619 249 SRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASV-T-A-A--- 322 (407)
Q Consensus 249 ~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~-~-~-~--- 322 (407)
| . .+.+|+++++||+|.++++++|...+++|++.. . . .
T Consensus 161 --------~---------------------------~-~~~~d~v~viy~~f~s~~~~~~~~~~llP~~~~~~~~~~~~~ 204 (291)
T PRK13424 161 --------Y---------------------------L-TGELDEVVLVYGEFVSMARQLPITLQILPIAPEEAEEEEAGA 204 (291)
T ss_pred --------H---------------------------H-cCCCCEEEEEeccccccccCceEEEEecCCCccccccccccc
Confidence 0 0 015666666667666666666777777776422 1 1 1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHh
Q psy9619 323 PKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIIS 402 (407)
Q Consensus 323 ~~~~~~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVs 402 (407)
...+.|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||+
T Consensus 205 ~~~~~~ep~~~~il~~L~~~yl~~~ly~al~es~asE~aaR~~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~Ei~EIvs 284 (291)
T PRK13424 205 SSEYIYEPSVEGLLAELLPRFIKVQIYRGLLDTSASEHAARMTAMDNATRNCDDMIGSLTLLYNKTRQASITRELMDIVG 284 (291)
T ss_pred ccCeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11378999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCC
Q psy9619 403 GASAL 407 (407)
Q Consensus 403 Ga~Al 407 (407)
||+||
T Consensus 285 Ga~al 289 (291)
T PRK13424 285 GAEAL 289 (291)
T ss_pred HHHHh
Confidence 99986
No 9
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=100.00 E-value=2.2e-69 Score=531.46 Aligned_cols=271 Identities=40% Similarity=0.570 Sum_probs=229.3
Q ss_pred ccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhccc-----CCC--CCC-CCCcEEEEE
Q psy9619 21 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEV-----TTP--EGT-ESPKELLIA 92 (407)
Q Consensus 21 a~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~~-----~~p--~~~-~~~~~~~Iv 92 (407)
|||++||+||+||++|+|||+||||||++|+||+++++.+.+||++.+..++.++.. .+| ..+ +.++.+|||
T Consensus 1 A~lk~ik~RI~sv~~i~kIt~aMkmvA~sklrk~~~~~~~~~~y~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv 80 (290)
T PF00231_consen 1 ASLKEIKRRIKSVKSIQKITKAMKMVAASKLRKAQKALEAARPYAETIEEILADLLSSISDYQHPLLKKREEVKKVLLIV 80 (290)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHTTT--SSGS-----SCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccCcccccccccceEEEEE
Confidence 689999999999999999999999999999999999999999999999999988732 244 333 578899999
Q ss_pred EcCCccccchhhHHHHHHHHHHHHhc---CCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHHhhh
Q psy9619 93 VTSDRGLCGAVHTSVARWIRNELQTK---GDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSK 169 (407)
Q Consensus 93 itSDrGLCG~fN~~i~k~~~~~l~~~---~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~~~~ 169 (407)
|||||||||+||++|++.+.+++++. |+++.+++||+||.++|.+ +|.++...+.+++ ++|+++++..+++.+.+
T Consensus 81 itSDrGLCG~fN~~v~k~~~~~~~~~~~~g~~~~l~~iG~K~~~~~~~-~~~~i~~~~~~~~-~~~~~~~~~~i~~~l~~ 158 (290)
T PF00231_consen 81 ITSDRGLCGGFNSNVIKAAESFIKEKDDQGKEVKLIVIGKKGRDFLKK-RGYNIIASFNGIS-SDPTFEEASEIAEKLID 158 (290)
T ss_dssp E--STSSSTTHHHHHHHHHHHHHCCSCTTTSEEEEEEESHHHHHHHHC-SSTTEEEEEESBT-SS--HHHHHHHHHHHHH
T ss_pred EecCccccccccHHHHHHHHHHHhhccccCCceEEEEeCcchhhhhhh-CCCcceeeeeccc-chhhHHHHHHHHHHHHh
Confidence 99999999999999999999999864 4578999999999999998 5889999999888 88999999888877643
Q ss_pred cccceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcchh
Q psy9619 170 YNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKS 249 (407)
Q Consensus 170 ~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k~ 249 (407)
.
T Consensus 159 ~------------------------------------------------------------------------------- 159 (290)
T PF00231_consen 159 L------------------------------------------------------------------------------- 159 (290)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred h-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccccccc--------ccc
Q psy9619 250 RAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLAS--------VTA 321 (407)
Q Consensus 250 ~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~--------~~~ 321 (407)
| . .+.+|+++++||+|.+.++++|...+|+|+.. .+.
T Consensus 160 -------~---------------------------~-~~~~d~v~viy~~~~~~~~~~~~~~~llP~~~~~~~~~~~~~~ 204 (290)
T PF00231_consen 160 -------Y---------------------------E-SGEIDEVYVIYNKFKSAVSQEPVVEQLLPLEKDIEQSSEEKWP 204 (290)
T ss_dssp -------C---------------------------C-CCS-SEEEEEEEEECSTTEEEEEEEEESSS-----HHHHHTTT
T ss_pred -------h---------------------------h-cCCCCeEEEEEEEeccceeeeEEeeehhhhhccchhhcccccc
Confidence 0 0 12678888888888888888888888888611 112
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy9619 322 APKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEII 401 (407)
Q Consensus 322 ~~~~~~~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIV 401 (407)
....+.|||+++++++.|+|.|+.+.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||
T Consensus 205 ~~~~~~~ep~~~~il~~L~~~yl~~~l~~al~eS~asE~~aR~~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~Ei~EIv 284 (290)
T PF00231_consen 205 KKSPYEFEPSPEEILDDLLPQYLFAQLYGALLESKASENAARMIAMENATDNAEELIDKLTLEYNRARQAEITQEIIEIV 284 (290)
T ss_dssp TGGGCCCSSTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCC
Q psy9619 402 SGASAL 407 (407)
Q Consensus 402 sGa~Al 407 (407)
|||+||
T Consensus 285 sGaeAl 290 (290)
T PF00231_consen 285 SGAEAL 290 (290)
T ss_dssp HHHHT-
T ss_pred HHhhcC
Confidence 999997
No 10
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=8.9e-69 Score=527.92 Aligned_cols=271 Identities=24% Similarity=0.410 Sum_probs=224.5
Q ss_pred CccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhccc-----CCC--CCCCCCcEEEEE
Q psy9619 20 MATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEV-----TTP--EGTESPKELLIA 92 (407)
Q Consensus 20 Ma~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~~-----~~p--~~~~~~~~~~Iv 92 (407)
|+++++||+||+||++|+|||+||||||++|+|||++++.+.+||++.+.+++.++.. .+| ..++.+++++||
T Consensus 1 Ma~l~~ik~RI~sv~~t~kIt~AMkmVAasklrka~~~~~~~~~Y~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~Iv 80 (291)
T PRK13426 1 MASLKEIKTRIASVQSTRKITSAMKMVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADLDVESPFTVERPVKRVAIVV 80 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccCCCCCcccccCCcceEEEEE
Confidence 8999999999999999999999999999999999999999999999999999887521 234 222345677999
Q ss_pred EcCCccccchhhHHHHHHHHHHHHh---cC-CcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHHhh
Q psy9619 93 VTSDRGLCGAVHTSVARWIRNELQT---KG-DKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETS 168 (407)
Q Consensus 93 itSDrGLCG~fN~~i~k~~~~~l~~---~~-~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~~~ 168 (407)
||||||||||||++|+|.+.+++++ .+ +++.+++||+||.++|.+ +|.++...+.+.+ +.|+|+++..+++.++
T Consensus 81 itSDrGLcG~fN~~v~~~~~~~~~~~~~~~~~~~~~~~vG~k~~~~~~~-~~~~i~~~~~~~~-~~~~~~~~~~i~~~l~ 158 (291)
T PRK13426 81 FSSNTSLCGGFNANIIKLLLQTIGEYRTLGQDNILIYPVGKKIEEAVKK-LGFKVQGDYQTLA-DKPSYEEAAALAMRLM 158 (291)
T ss_pred EeCCCcccchhhHHHHHHHHHHHHHHhhcCCCceEEEEeeHHHHHHHHH-cCCCceEeecccC-CCCCHHHHHHHHHHHH
Confidence 9999999999999999999998864 23 577899999999999985 5999999988877 6679999998886653
Q ss_pred hcccceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcch
Q psy9619 169 KYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDK 248 (407)
Q Consensus 169 ~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k 248 (407)
+.
T Consensus 159 ~~------------------------------------------------------------------------------ 160 (291)
T PRK13426 159 EL------------------------------------------------------------------------------ 160 (291)
T ss_pred HH------------------------------------------------------------------------------
Confidence 21
Q ss_pred hHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccccccccc-----cCC
Q psy9619 249 SRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVT-----AAP 323 (407)
Q Consensus 249 ~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~~-----~~~ 323 (407)
| . .+.+|++.++||+|+++++++|...+|+|++... ..+
T Consensus 161 --------~---------------------------~-~~~~d~v~iiy~~f~s~~~q~~~~~~llPi~~~~~~~~~~~~ 204 (291)
T PRK13426 161 --------F---------------------------L-EGEIDKVELIYHHFKSMGVQVLTRETYLPIDLSQEKNAEHAG 204 (291)
T ss_pred --------H---------------------------h-cCCCCEEEEEecccccccccceeEEEecCCCccccccccccc
Confidence 0 0 0145555555555555555555555555553211 001
Q ss_pred ---CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy9619 324 ---KLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEI 400 (407)
Q Consensus 324 ---~~~~~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EI 400 (407)
..+.|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+||
T Consensus 205 ~~~~~~~~Ep~~e~il~~L~~~yl~~~ly~alles~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EI 284 (291)
T PRK13426 205 GVANDYIIEPSADTVLNDLIPKLLSLKIYTALLDSNASEHAARMVAMQIATDNANELLQELTLQYNKSRQQAITNELLDI 284 (291)
T ss_pred CCCCceEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcC
Q psy9619 401 ISGASA 406 (407)
Q Consensus 401 VsGa~A 406 (407)
||||+|
T Consensus 285 vsGaea 290 (291)
T PRK13426 285 VGGSMA 290 (291)
T ss_pred Hhhhhc
Confidence 999997
No 11
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=8.4e-69 Score=528.12 Aligned_cols=271 Identities=30% Similarity=0.429 Sum_probs=230.6
Q ss_pred cHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhccc-----CCC--CCCCCCcEEEEEEc
Q psy9619 22 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEV-----TTP--EGTESPKELLIAVT 94 (407)
Q Consensus 22 ~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~~-----~~p--~~~~~~~~~~Ivit 94 (407)
++++||+||+||++|+|||+||||||++|+||+++++.+.+||++.+.+++.++.. .+| ..++.++.++||||
T Consensus 5 slkeik~RI~sv~~~~kIT~AMkmVAasklrkaq~~~~~~~~y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ivit 84 (291)
T PRK14110 5 SPRDIKRKIQGIKNTRRITNAMKVVSAAKLRKAQELLYASRPYSEKLYELISDLAAHIDRESHPLLERREEKNVDLVIIT 84 (291)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCCccCcccccCccceEEEEEEe
Confidence 68999999999999999999999999999999999999999999999999887521 144 23334567799999
Q ss_pred CCccccchhhHHHHHHHHHHHHh---cCCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHHhhhcc
Q psy9619 95 SDRGLCGAVHTSVARWIRNELQT---KGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYN 171 (407)
Q Consensus 95 SDrGLCG~fN~~i~k~~~~~l~~---~~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~~~~~~ 171 (407)
||||||||||++|+|.+.+++++ .++++.+++||+||.++|.+ +|.++...+.++...+++|+.+..+++.+.+.
T Consensus 85 SDrGLCG~fNs~vik~~~~~~~~~~~~~~~~~l~~iG~Kg~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~~- 162 (291)
T PRK14110 85 ADRGLAGAFNSNVIKTAERLIQEKQSEGVRVNLILIGRKGVQYFSK-RGYNIIKSYEDVFRKEINFSVVKEVGGILASR- 162 (291)
T ss_pred CCCCccccccHHHHHHHHHHHHHHHhCCCceEEEEehHHHHHHHHH-cCCCceeeeccccCCCCCHHHHHHHHHHHHHH-
Confidence 99999999999999999999864 35678899999999999986 58889998888876677999999988765320
Q ss_pred cceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcchhHH
Q psy9619 172 FTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRA 251 (407)
Q Consensus 172 ~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k~~~ 251 (407)
T Consensus 163 -------------------------------------------------------------------------------- 162 (291)
T PRK14110 163 -------------------------------------------------------------------------------- 162 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccccccccc-cC--C--CCC
Q psy9619 252 ILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVT-AA--P--KLG 326 (407)
Q Consensus 252 il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~~-~~--~--~~~ 326 (407)
| .. +.+|++.++||+|.++++++|.+.+|+|+++.. .. + ..+
T Consensus 163 -----~---------------------------~~-~~~d~v~iiy~~f~s~~~~~~~~~~llP~~~~~~~~~~~~~~~~ 209 (291)
T PRK14110 163 -----Y---------------------------IE-EETDAVYLINNEMITRATYKPKVRKFLPFEVEAQEKKLDELSVY 209 (291)
T ss_pred -----H---------------------------Hc-CCCCEEEEEecccccceeeeEEEEEecCCCccccccccCCCCCe
Confidence 0 00 156777777777777777777777777774221 11 1 137
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhhcC
Q psy9619 327 VYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASA 406 (407)
Q Consensus 327 ~~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVsGa~A 406 (407)
.|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+||+++|+++|||+||++||+||+|||+||+|
T Consensus 210 ~~ep~~~~vl~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~Ei~EIv~Gaea 289 (291)
T PRK14110 210 NIEVSEEEFLDKLLQLYLNYQLYRALVESNAAEHFARMVAMDNATRNAGELIRKWTLIFNKARQEAITTELIDIVNAAEA 289 (291)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy9619 407 L 407 (407)
Q Consensus 407 l 407 (407)
|
T Consensus 290 l 290 (291)
T PRK14110 290 M 290 (291)
T ss_pred c
Confidence 6
No 12
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP.
Probab=100.00 E-value=2.5e-68 Score=523.69 Aligned_cols=272 Identities=39% Similarity=0.603 Sum_probs=233.2
Q ss_pred CccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhccc-----CCC--CCCCCCcEEEEE
Q psy9619 20 MATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEV-----TTP--EGTESPKELLIA 92 (407)
Q Consensus 20 Ma~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~~-----~~p--~~~~~~~~~~Iv 92 (407)
|+++++||+||+||++|+|||+||||||++|+||+++++.+.+||++.+.+++.++.. .+| ..++.++.++||
T Consensus 1 M~~l~eik~RI~sv~~~~kIt~aMkmvA~sklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iv 80 (287)
T TIGR01146 1 MATLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYAEKIRAVLGNLATKLLNYDHPLLKSREVKKVGILV 80 (287)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCCCCCccccccccCeEEEEE
Confidence 8999999999999999999999999999999999999999999999999999888632 234 223345677999
Q ss_pred EcCCccccchhhHHHHHHHHHHHHh---cCCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHHhhh
Q psy9619 93 VTSDRGLCGAVHTSVARWIRNELQT---KGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSK 169 (407)
Q Consensus 93 itSDrGLCG~fN~~i~k~~~~~l~~---~~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~~~~ 169 (407)
|||||||||+||++|++.+.+.+++ .++++.+++||+||.++|.+ +|.++...+.+.+ ++|+|+.+..+++.+++
T Consensus 81 itSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~vG~k~~~~l~~-~~~~i~~~~~~~~-~~~~~~~~~~i~~~i~~ 158 (287)
T TIGR01146 81 ITSDRGLCGGYNSNVLKRVRQRAKELKAAGKEVKLVVIGRKGKSFFKR-RGDNIVLSITGLS-DQPTFEEASGIADKLLD 158 (287)
T ss_pred EeCCCCccccccHHHHHHHHHHHHHHhccCCceEEEEeeHHHHHHHHH-cCCCeeEeecccC-CCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999864 24567899999999999986 5899999998776 67899999999877643
Q ss_pred cccceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcchh
Q psy9619 170 YNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKS 249 (407)
Q Consensus 170 ~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k~ 249 (407)
. |
T Consensus 159 ~-~----------------------------------------------------------------------------- 160 (287)
T TIGR01146 159 A-F----------------------------------------------------------------------------- 160 (287)
T ss_pred H-H-----------------------------------------------------------------------------
Confidence 1 0
Q ss_pred HHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccccccccc-cC----CC
Q psy9619 250 RAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVT-AA----PK 324 (407)
Q Consensus 250 ~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~~-~~----~~ 324 (407)
. .+.+|+++++||+|.++++++|.+.+++|++..+ .. +.
T Consensus 161 -----------------------------------~-~~~~d~v~viy~~f~~~~~~~~~~~~llP~~~~~~~~~~~~~~ 204 (287)
T TIGR01146 161 -----------------------------------A-SGEFDEVYIVYNKFVSSISQEPTVKQLLPLSEQGPDEGFKFGQ 204 (287)
T ss_pred -----------------------------------H-cCCCCEEEEEecccccceeeeEEEEEeeCCCcccccccccCCC
Confidence 0 0156777777777777777777777777775312 11 11
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhh
Q psy9619 325 LGVYDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGA 404 (407)
Q Consensus 325 ~~~~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVsGa 404 (407)
.+.|||+++++|+.++|.|+++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+||||||
T Consensus 205 ~~~~ep~~~~vl~~l~~~yl~~~ly~a~~es~asE~aaR~~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIvsGa 284 (287)
T TIGR01146 205 DYIFEPDEEEILDDLLPRYLESQIYGALLESAASEQAARMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAGA 284 (287)
T ss_pred CeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy9619 405 SAL 407 (407)
Q Consensus 405 ~Al 407 (407)
+||
T Consensus 285 eal 287 (287)
T TIGR01146 285 SAL 287 (287)
T ss_pred hcC
Confidence 996
No 13
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=100.00 E-value=8.6e-68 Score=519.03 Aligned_cols=272 Identities=35% Similarity=0.510 Sum_probs=236.7
Q ss_pred CccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhcc-c---CCC--CCCCCCcEEEEEE
Q psy9619 20 MATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAE-V---TTP--EGTESPKELLIAV 93 (407)
Q Consensus 20 Ma~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~-~---~~p--~~~~~~~~~~Ivi 93 (407)
|++|++||+||+||++|+|||+||||||++|++|+++++.+.+||++++.+++.++. . .+| ..++.++.++|||
T Consensus 1 M~~l~~lk~RI~sv~~i~kIt~aMkmvA~skl~k~~~~~~~~~~y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~ivi 80 (284)
T PRK05621 1 MASLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRKVISHLASASEYDHPLLVEREVKRVGYIVV 80 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCCCCcccccCCCceEEEEEE
Confidence 899999999999999999999999999999999999999999999999999988853 1 244 2233566789999
Q ss_pred cCCccccchhhHHHHHHHHHHHHhc---CCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHHhhhc
Q psy9619 94 TSDRGLCGAVHTSVARWIRNELQTK---GDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKY 170 (407)
Q Consensus 94 tSDrGLCG~fN~~i~k~~~~~l~~~---~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~~~~~ 170 (407)
||||||||+||++|+|.+.+.+++. ++++.+++||+||.++|.+ +|.++...+.+.+ +.|+|+.+..+++.+++.
T Consensus 81 tSd~GLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~iG~k~~~~l~~-~~~~i~~~~~~~~-~~~~~~~~~~i~~~i~~~ 158 (284)
T PRK05621 81 TSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKR-RGINVVAEYTGLG-DQPTFEEAIGIAKKLLDA 158 (284)
T ss_pred eCCCcccchhhHHHHHHHHHHHHHHHhcCCceEEEEehHHHHHHHHH-cCCCceeeeeccC-CCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998742 4577899999999999986 4878988888877 577999888888776320
Q ss_pred ccceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcchhH
Q psy9619 171 NFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSR 250 (407)
Q Consensus 171 ~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k~~ 250 (407)
+
T Consensus 159 ---------------------------------------------------------------~---------------- 159 (284)
T PRK05621 159 ---------------------------------------------------------------Y---------------- 159 (284)
T ss_pred ---------------------------------------------------------------H----------------
Confidence 0
Q ss_pred HHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccccccccccC---CCCCc
Q psy9619 251 AILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAA---PKLGV 327 (407)
Q Consensus 251 ~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~~~~---~~~~~ 327 (407)
. .+.+|++.++||+|.++++++|...+++|++..... +..+.
T Consensus 160 ----------------------------------~-~~~~~~i~viy~~f~~~~~~~~~~~~llP~~~~~~~~~~~~~~~ 204 (284)
T PRK05621 160 ----------------------------------D-NGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKEEEEEETSWDYE 204 (284)
T ss_pred ----------------------------------H-cCCCCEEEEEecccccceecceEEEEeCCCCcccccccccCCee
Confidence 0 127788888888888888888888888888643221 23578
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhhcCC
Q psy9619 328 YDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407 (407)
Q Consensus 328 ~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVsGa~Al 407 (407)
|||+++++|+.++|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+||||||+||
T Consensus 205 ~ep~~~~vl~~l~~~yl~~~l~~al~es~asE~aaR~~AM~~At~Na~e~i~~L~~~~Nr~RQ~~IT~El~EIvsGaeal 284 (284)
T PRK05621 205 YEPDAEEILDALLPRYVESQIYQALLENKASEQAARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGAEAL 284 (284)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
No 14
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=100.00 E-value=5.5e-67 Score=513.86 Aligned_cols=267 Identities=20% Similarity=0.242 Sum_probs=222.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhcccCC------C--CC-CCCCcEEEEEEcCC
Q psy9619 26 ISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTT------P--EG-TESPKELLIAVTSD 96 (407)
Q Consensus 26 ir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~Y~~~i~~~l~~~~~~~------p--~~-~~~~~~~~IvitSD 96 (407)
||+||+||++|+|||+||||||+||+|||++++.+.+||++.+.+++.++...+ | .. +..++.++||||||
T Consensus 1 ik~RI~Sv~~t~kITkAMkmVAasklrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IvitSD 80 (285)
T TIGR03323 1 LRRKIESAADLQSVVRTMKALAAVSIRQYEDAVRALDDYYRTVELGLAVCLRRIPLAALSPSGPNQKVSGHTGAIVFGSD 80 (285)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhCCCcccccccccccCCCcEEEEEEECC
Confidence 689999999999999999999999999999999999999999999988853211 2 11 12356789999999
Q ss_pred ccccchhhHHHHHHHHHHHHhcCCcEEEEEEccccHHHHHHhhCCceeEeecccCCCCCChhhhHHHHHHhhhcccceEE
Q psy9619 97 RGLCGAVHTSVARWIRNELQTKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK 176 (407)
Q Consensus 97 rGLCG~fN~~i~k~~~~~l~~~~~~~~li~IG~Kg~~~l~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~ 176 (407)
||||||||++|+|.+.+.+++...++.+++||+||.++|.+ +|.++...+. .+++++++..+++.+++.
T Consensus 81 rGLCG~fN~~l~k~~~~~~~~~~~~~~~~~iG~K~~~~~~~-~~~~i~~~~~----~~~~~~~~~~i~~~i~~~------ 149 (285)
T TIGR03323 81 QGLVGQFNEVILTFAAEELARLPGEATIWAVGERVASRLED-SGLTIGELFR----LPNSVGAITPLVSELLIE------ 149 (285)
T ss_pred CcCchHhHHHHHHHHHHHHHhccCCeEEEEECHHHHHHHHH-cCCCceEeec----CcCCHHHHHHHHHHHHHH------
Confidence 99999999999999999987533467899999999999985 5888888775 355777777777665320
Q ss_pred EEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcchhHHHHHHh
Q psy9619 177 IIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRAILQRL 256 (407)
Q Consensus 177 i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k~~~il~~~ 256 (407)
| ...+
T Consensus 150 --------------------------------------------~---------~~~~---------------------- 154 (285)
T TIGR03323 150 --------------------------------------------V---------EARR---------------------- 154 (285)
T ss_pred --------------------------------------------H---------Hhhh----------------------
Confidence 0 0000
Q ss_pred hchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeecccccccccccccccccccc--cc-------CCCCCc
Q psy9619 257 YGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASV--TA-------APKLGV 327 (407)
Q Consensus 257 ~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~~~~--~~-------~~~~~~ 327 (407)
..+.+|+++++||+|.++++++|..++|||++.. .. .+..+.
T Consensus 155 -----------------------------~~~~~d~v~iiY~~f~s~~~~~~~~~~llP~~~~~~~~~~~~~~~~~~~~~ 205 (285)
T TIGR03323 155 -----------------------------EQGQLAELYLFFNRPSSGGSYEPTCQRLLPLDETWQRQLATQQWPTKCLPE 205 (285)
T ss_pred -----------------------------hcCCCcEEEEEecccccCcccceeeEEeeCCCccccccccccccccCCCce
Confidence 0126788888888888888888888888888531 11 112378
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhhcCC
Q psy9619 328 YDSLDADVIQSYLEFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407 (407)
Q Consensus 328 ~e~~~~~ll~~ll~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVsGa~Al 407 (407)
|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+||+++|+++|||+||++||+||+||||||+||
T Consensus 206 ~ep~~~~il~~L~~~yl~~~ly~alles~asE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~Ei~EIvsGaeal 285 (285)
T TIGR03323 206 LMGEPEETFSALIREYLFVSLFRACAESLASENASRLAAMQRAEKNIDELLDDLNRRFHRLRQSAIDEELFDVVSGFEAL 285 (285)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
No 15
>KOG1531|consensus
Probab=99.76 E-value=6.7e-20 Score=176.07 Aligned_cols=114 Identities=42% Similarity=0.642 Sum_probs=107.9
Q ss_pred cceEEEEEeeceecccccccccccccccccccCCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcchhHH
Q psy9619 172 FTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRA 251 (407)
Q Consensus 172 ~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k~~~ 251 (407)
||++.++||+|+|.++++|+.+||||+..+.+.+.+++||..++|+++.|+|++++.++|++|.||
T Consensus 186 ~d~~~ivyNkF~SvVs~e~~~~~il~l~~i~~s~~l~~~d~iddev~q~~~e~~la~~I~~am~Es-------------- 251 (304)
T KOG1531|consen 186 FDKGSIVYNKFKSVVSYETSEKPILPLETIEESESLSCYDSIDDEVLQSLMEYSLANQIYYAMKES-------------- 251 (304)
T ss_pred ccceEEEeecchhheeeccccccccCHHHhcccccccchhhhhHHHHhhHHHHHHHHHHHHHHHHH--------------
Confidence 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccccc
Q psy9619 252 ILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSL 316 (407)
Q Consensus 252 il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP~ 316 (407)
.|||+++||++|.+|+++|.| |+|+|++.|||.||+ .+|.++.+|+..
T Consensus 252 ------------~~SE~saRm~AMdnaSkNAge----mi~kltl~yNRtRQA-~IT~ELieIisG 299 (304)
T KOG1531|consen 252 ------------ATSELSARMNAMDNASKNAGE----MIDKLTLTYNRTRQA-VITNELIEIISG 299 (304)
T ss_pred ------------HHHHHHHHHhhhhccccCHHH----HHHHHhhhhhhhccc-chHHHHHHHHhh
Confidence 899999999999999999988 999999999999998 677777777654
No 16
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=99.75 E-value=7.5e-20 Score=179.37 Aligned_cols=127 Identities=20% Similarity=0.251 Sum_probs=110.6
Q ss_pred hhhHHHHHHhhhcccceEEEEEeeceeccccccccccccccccccc---CCCC--CcccCCh--HHHHHHHHHHHHHHHH
Q psy9619 158 LDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTA---APKL--GVYDSLD--ADVIQSYLEFSMAAML 230 (407)
Q Consensus 158 ~~a~~i~~~~~~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~---~~~~--~~~~~~~--~~~~~~~~~~~~~~~l 230 (407)
..+..+.+.+.+..+|+++|+||+|+|+++|.|+..+++|++.... .... ..|+||| +++++.|+|.|+..+|
T Consensus 148 ~i~~~~~~~~~~g~~d~v~l~yn~f~n~~sq~~~~~~llP~~~~~~~~~~~~~~~~~~efEpd~e~il~~Ll~~Y~~~~i 227 (287)
T COG0224 148 QIADKILDAFLEGEIDELYLVYNKFKNALSQEPTVQQLLPLDKIEDEAEEEEPGLWDYEFEPDAEEILETLLPRYLESQL 227 (287)
T ss_pred HHHHHHHHHHhCCCCceEEEEecccccceeeeeeeEEEecCCcccchhhhccccccceeeCCCHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999999999999999999985432 1111 4777777 7799999999999999
Q ss_pred HHHHhcCcchhhhhhcchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccc
Q psy9619 231 YYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSD 310 (407)
Q Consensus 231 y~~~~e~~~~~~~~ig~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~ 310 (407)
|+++.|+ .|||+++||.+|++|++||.+ ++++|++.|||.||+ .+|.++
T Consensus 228 y~alles--------------------------~asE~aaRm~AM~~ATdNA~~----lI~~l~l~yNk~RQa-~ITqEL 276 (287)
T COG0224 228 YGALLES--------------------------KASEHAARMTAMKNATDNAGD----LIKELTLVYNKARQA-AITQEL 276 (287)
T ss_pred HHHHHHH--------------------------HHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHH-HHHHHH
Confidence 9999999 799999999999999999998 999999999999996 556666
Q ss_pred ccccc
Q psy9619 311 LPIFS 315 (407)
Q Consensus 311 ~~llP 315 (407)
.+|+.
T Consensus 277 ~EIV~ 281 (287)
T COG0224 277 IEIVG 281 (287)
T ss_pred HHHHh
Confidence 66654
No 17
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.67 E-value=4.7e-18 Score=167.81 Aligned_cols=127 Identities=17% Similarity=0.084 Sum_probs=108.4
Q ss_pred hhHHHHHHhhhcccceEEEEEeeceecccccccccccccccccc--cC-CCCCcccCCh--HHHHHHHHHHHHHHHHHHH
Q psy9619 159 DASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVT--AA-PKLGVYDSLD--ADVIQSYLEFSMAAMLYYA 233 (407)
Q Consensus 159 ~a~~i~~~~~~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~--~~-~~~~~~~~~~--~~~~~~~~~~~~~~~ly~~ 233 (407)
-+..+.+.+.+.+||+++|+||+|+|.++|.|...++||++... .. .....|.+|| ++|++.++|.|+.+.||.+
T Consensus 153 i~~~l~~~~~~~~~d~v~viy~~f~s~~~q~~~~~~llP~~~~~~~~~~~~~~~~~~ep~~~~vl~~l~~~yl~~~ly~a 232 (289)
T PRK13427 153 LANLFMERFANESVDAVEIASTVYYSAASQKPETTRVLPLEPPTAAAEGSVQDDVVYEPSPEAILESLLPLVVKTAFLKA 232 (289)
T ss_pred HHHHHHHHHHcCCCCEEEEEecccccceecceeeEEeeCCCcccccccccCCCceEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 46677888889999999999999999999999999999996322 11 1112365665 8899999999999999999
Q ss_pred HhcCcchhhhhhcchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeecccccccccccccc
Q psy9619 234 MKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPI 313 (407)
Q Consensus 234 ~~e~~~~~~~~ig~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~l 313 (407)
+.|+ .+||+++||.+|.+|++||++ ++++|++.|||.||+ .+|.++.+|
T Consensus 233 lles--------------------------~aSE~aaRm~AM~~At~Na~e----~i~~L~l~yNr~RQ~-~IT~EL~EI 281 (289)
T PRK13427 233 ILEA--------------------------NASEQIARRIAMKSATDAASE----MIKLLTRGYNRVRQA-KITQEISEI 281 (289)
T ss_pred HHHH--------------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999 799999999999999999998 999999999999997 677777777
Q ss_pred ccc
Q psy9619 314 FSL 316 (407)
Q Consensus 314 lP~ 316 (407)
+..
T Consensus 282 v~G 284 (289)
T PRK13427 282 VGG 284 (289)
T ss_pred HHH
Confidence 643
No 18
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.66 E-value=6.2e-18 Score=166.83 Aligned_cols=127 Identities=24% Similarity=0.246 Sum_probs=108.1
Q ss_pred hhHHHHHHhhhcccceEEEEEeeceecccccccccccccccccccC--CCCCcccCCh--HHHHHHHHHHHHHHHHHHHH
Q psy9619 159 DASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAA--PKLGVYDSLD--ADVIQSYLEFSMAAMLYYAM 234 (407)
Q Consensus 159 ~a~~i~~~~~~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~ly~~~ 234 (407)
-+..+.+.+...+||+++|+||+|+|.++|.|...++||++..... +....|.+|| ++|++.++|+|+.+.||.++
T Consensus 152 i~~~l~~~~~~~~~d~v~iiy~~f~n~~~q~~~~~~llP~~~~~~~~~~~~~~~~~ep~~~~vl~~l~~~yl~~~ly~al 231 (288)
T PRK13423 152 LAQELIEGYLAGEYDEVYLVYNEFKSVMSQDITVQQLLPIDPPEAADDEYLPEYIYEPSRDALLAELLPKHVEVQIYRAL 231 (288)
T ss_pred HHHHHHHHHhcCCCCEEEEEecccccccccceeEEEecCCCcccccccccccceeecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888889999999999999999999999999999632222 1122366655 88999999999999999999
Q ss_pred hcCcchhhhhhcchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccccc
Q psy9619 235 KEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIF 314 (407)
Q Consensus 235 ~e~~~~~~~~ig~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~ll 314 (407)
.|+ .+||+++||.+|++|++||++ ++++|++.|||.||+ .+|.++.+|+
T Consensus 232 ~es--------------------------~aSE~aaRm~AM~~At~Na~e----~i~~L~l~yNr~RQ~-~IT~EL~EIv 280 (288)
T PRK13423 232 LES--------------------------VASEHGARMTAMDSATKNATE----MIGKLTLQYNRARQA-AITTELMEIV 280 (288)
T ss_pred HHH--------------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999 799999999999999999998 999999999999997 6667777776
Q ss_pred cc
Q psy9619 315 SL 316 (407)
Q Consensus 315 P~ 316 (407)
..
T Consensus 281 sG 282 (288)
T PRK13423 281 SG 282 (288)
T ss_pred HH
Confidence 43
No 19
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.66 E-value=7.5e-18 Score=166.49 Aligned_cols=127 Identities=19% Similarity=0.191 Sum_probs=107.1
Q ss_pred hhHHHHHHhhhcccceEEEEEeeceeccccccccccccccccc--ccC-CCCCcccCCh--HHHHHHHHHHHHHHHHHHH
Q psy9619 159 DASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASV--TAA-PKLGVYDSLD--ADVIQSYLEFSMAAMLYYA 233 (407)
Q Consensus 159 ~a~~i~~~~~~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~--~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~ly~~ 233 (407)
-+..+.+.+.+.++|+++++||+|+|.++|.|...+++|++.. .+. +....|+++| ++|++.++|+|+...||.+
T Consensus 155 i~~~l~~~~~~~~~d~v~iiy~~f~s~~~~~~~~~~llP~~~~~~~~~~~~~~~~~~ep~~~~vl~~L~~~yl~~~ly~a 234 (291)
T PRK14110 155 VGGILASRYIEEETDAVYLINNEMITRATYKPKVRKFLPFEVEAQEKKLDELSVYNIEVSEEEFLDKLLQLYLNYQLYRA 234 (291)
T ss_pred HHHHHHHHHHcCCCCEEEEEecccccceeeeEEEEEecCCCccccccccCCCCCeEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888889999999999999999999999999999521 111 2222466666 7899999999999999999
Q ss_pred HhcCcchhhhhhcchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeecccccccccccccc
Q psy9619 234 MKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPI 313 (407)
Q Consensus 234 ~~e~~~~~~~~ig~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~l 313 (407)
+.|+ .+||+++||.+|++|+++|++ ++++|++.|||.||+ .+|.++.+|
T Consensus 235 l~es--------------------------~aSE~aaRm~AM~~At~Na~e----~i~~L~l~yNr~RQ~-~IT~Ei~EI 283 (291)
T PRK14110 235 LVES--------------------------NAAEHFARMVAMDNATRNAGE----LIRKWTLIFNKARQE-AITTELIDI 283 (291)
T ss_pred HHHH--------------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999 799999999999999999998 999999999999997 666777666
Q ss_pred ccc
Q psy9619 314 FSL 316 (407)
Q Consensus 314 lP~ 316 (407)
+..
T Consensus 284 v~G 286 (291)
T PRK14110 284 VNA 286 (291)
T ss_pred HHH
Confidence 543
No 20
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.65 E-value=1.1e-17 Score=165.84 Aligned_cols=76 Identities=24% Similarity=0.141 Sum_probs=68.2
Q ss_pred ccCCh--HHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhcc
Q psy9619 210 YDSLD--ADVIQSYLEFSMAAMLYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSK 287 (407)
Q Consensus 210 ~~~~~--~~~~~~~~~~~~~~~ly~~~~e~~~~~~~~ig~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~ 287 (407)
|.++| ++|++.|+|+|+.+.||.++.|| .+||+++||.+|++|++||++
T Consensus 217 ~~~ep~~~~il~~L~~~yl~~~ly~al~eS--------------------------~aSE~aaRm~AM~~At~Na~e--- 267 (298)
T PRK13422 217 YIYERDIEEVLNALCIRYIEAQVRGAILEN--------------------------AACEQAARMMAMKNATDNASD--- 267 (298)
T ss_pred eEecCCHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHH---
Confidence 45554 88999999999999999999999 799999999999999999998
Q ss_pred CccceEEEEEeeccccccccccccccccc
Q psy9619 288 YNFTSGKIIYNKFKSVVSYTTSDLPIFSL 316 (407)
Q Consensus 288 ~~i~~l~l~yNr~rq~is~~~~~~~llP~ 316 (407)
++++|++.|||.||+ .+|.++.+|+..
T Consensus 268 -li~~L~l~yNr~RQa-~IT~Ei~EIvsG 294 (298)
T PRK13422 268 -IIDQLKLDYNKVRQA-MITQELAEICSG 294 (298)
T ss_pred -HHHHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence 999999999999997 667777777644
No 21
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.65 E-value=1.2e-17 Score=165.02 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=107.4
Q ss_pred hhHHHHHHhhhcccceEEEEEeeceecccccccccccccccccccC-CCCCcccCCh--HHHHHHHHHHHHHHHHHHHHh
Q psy9619 159 DASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAA-PKLGVYDSLD--ADVIQSYLEFSMAAMLYYAMK 235 (407)
Q Consensus 159 ~a~~i~~~~~~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~ly~~~~ 235 (407)
-+..+.+.+...+||+++|+||+|+|.++|.|...++||++..... .....|+++| ++|++.++|.|+.+.||.++.
T Consensus 155 i~~~~~~~~~~~~~d~v~iiy~~f~s~~~~~~~~~~llP~~~~~~~~~~~~~~~~ep~~~~il~~L~~~yl~~~ly~al~ 234 (290)
T PRK14111 155 VATSAINGFQSGKYDEVYVLYSEFINTLVQRPTIKQLLPIEPPEISTTTVVDYTYEPSPEEVLRALLPRFVEVQLYQAVL 234 (290)
T ss_pred HHHHHHHHHHcCCCCEEEEEecccccceeeeeeEEEecCCCccccccccccceeecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888889999999999999999999999999999632111 1112366665 889999999999999999999
Q ss_pred cCcchhhhhhcchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeecccccccccccccccc
Q psy9619 236 EGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFS 315 (407)
Q Consensus 236 e~~~~~~~~ig~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP 315 (407)
|+ .+||+++||.+|.+|++||++ ++++|++.|||.||+ .+|.++.+|+.
T Consensus 235 es--------------------------~aSE~aaRm~AM~~At~Na~e----~i~~L~~~yNr~RQ~-~IT~El~EIVs 283 (290)
T PRK14111 235 ES--------------------------IASEHSARMVAMRNATDNAKE----LVRDLTLTYNKARQA-AITKEVSEIAS 283 (290)
T ss_pred HH--------------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 99 799999999999999999998 999999999999997 66677777764
Q ss_pred c
Q psy9619 316 L 316 (407)
Q Consensus 316 ~ 316 (407)
.
T Consensus 284 G 284 (290)
T PRK14111 284 G 284 (290)
T ss_pred H
Confidence 3
No 22
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=99.65 E-value=1.2e-17 Score=164.64 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=105.9
Q ss_pred hhHHHHHHhh----hcccceEEEEEeeceeccccccccccccccccc--ccC---C--CCCcccCCh--HHHHHHHHHHH
Q psy9619 159 DASKVAQETS----KYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASV--TAA---P--KLGVYDSLD--ADVIQSYLEFS 225 (407)
Q Consensus 159 ~a~~i~~~~~----~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~--~~~---~--~~~~~~~~~--~~~~~~~~~~~ 225 (407)
-+..+.+.+. +.+||+++|+||+|+|.++|.|...++||++.. ... + ....|+++| ++|++.|+|+|
T Consensus 142 i~~~i~~~~~~~~~~~~~d~v~iiY~~f~s~~~~~~~~~~llP~~~~~~~~~~~~~~~~~~~~~~ep~~~~il~~L~~~y 221 (285)
T TIGR03323 142 LVSELLIEVEARREQGQLAELYLFFNRPSSGGSYEPTCQRLLPLDETWQRQLATQQWPTKCLPELMGEPEETFSALIREY 221 (285)
T ss_pred HHHHHHHHHHhhhhcCCCcEEEEEecccccCcccceeeEEeeCCCccccccccccccccCCCceecCCHHHHHHHHHHHH
Confidence 4556666664 779999999999999999999999999999642 221 1 111266665 88999999999
Q ss_pred HHHHHHHHHhcCcchhhhhhcchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeecccccc
Q psy9619 226 MAAMLYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVS 305 (407)
Q Consensus 226 ~~~~ly~~~~e~~~~~~~~ig~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is 305 (407)
+.+.||.++.|+ .+||+++||.+|++|++||++ ++++|++.|||.||+ .
T Consensus 222 l~~~ly~alles--------------------------~asE~aaRm~AM~~At~Na~e----~i~~L~~~yNr~RQa-~ 270 (285)
T TIGR03323 222 LFVSLFRACAES--------------------------LASENASRLAAMQRAEKNIDE----LLDDLNRRFHRLRQS-A 270 (285)
T ss_pred HHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-H
Confidence 999999999999 799999999999999999998 999999999999997 6
Q ss_pred ccccccccccc
Q psy9619 306 YTTSDLPIFSL 316 (407)
Q Consensus 306 ~~~~~~~llP~ 316 (407)
+|.++.+|+..
T Consensus 271 IT~Ei~EIvsG 281 (285)
T TIGR03323 271 IDEELFDVVSG 281 (285)
T ss_pred HHHHHHHHHHH
Confidence 66677666543
No 23
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.65 E-value=1.3e-17 Score=164.79 Aligned_cols=127 Identities=19% Similarity=0.170 Sum_probs=107.3
Q ss_pred hhHHHHHHhhhcccceEEEEEeeceeccccccccccccccccccc-CCCCCcccCCh--HHHHHHHHHHHHHHHHHHHHh
Q psy9619 159 DASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTA-APKLGVYDSLD--ADVIQSYLEFSMAAMLYYAMK 235 (407)
Q Consensus 159 ~a~~i~~~~~~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~ly~~~~ 235 (407)
-+..+.+.+.+.++|+++|+||+|+|.++|.|...++||++.... ......|+++| ++|++.++|+|+...||.++.
T Consensus 156 i~~~~~~~~~~~~~d~v~viy~~f~~~~~~~~~~~~llP~~~~~~~~~~~~~~~~eP~~~~il~~L~~~yl~~~ly~al~ 235 (291)
T PRK13425 156 IAETASGMYLRGEVDKVVVVYNEFKSVLAPNLKSEVLLPITPEKPGAEGGSDYIYEPSPAAIIDELVPKHLNTQVWRMML 235 (291)
T ss_pred HHHHHHHHHHcCCCCEEEEEeccceeceeeeEEEEEeeCCCccccccccCCCeEecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888999999999999999999999999999963221 11111366666 889999999999999999999
Q ss_pred cCcchhhhhhcchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeecccccccccccccccc
Q psy9619 236 EGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFS 315 (407)
Q Consensus 236 e~~~~~~~~ig~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP 315 (407)
|+ .+||+++||.+|++|++||++ ++++|++.|||.||+ .+|.++.+|+.
T Consensus 236 es--------------------------~aSE~aaRm~AM~~At~Na~e----~i~~L~~~yNr~RQ~-~IT~Ei~EIv~ 284 (291)
T PRK13425 236 ES--------------------------NAAEQAARMTAMDSATENAKE----LLRTLNISYNRARQA-AITKELSEIVA 284 (291)
T ss_pred HH--------------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 99 799999999999999999998 999999999999997 66677767654
Q ss_pred c
Q psy9619 316 L 316 (407)
Q Consensus 316 ~ 316 (407)
.
T Consensus 285 G 285 (291)
T PRK13425 285 G 285 (291)
T ss_pred H
Confidence 3
No 24
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.64 E-value=1.6e-17 Score=164.13 Aligned_cols=127 Identities=18% Similarity=0.145 Sum_probs=107.9
Q ss_pred hhHHHHHHhhhcccceEEEEEeeceecccccccccccccccc--cc---cCCCC-CcccCCh--HHHHHHHHHHHHHHHH
Q psy9619 159 DASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLAS--VT---AAPKL-GVYDSLD--ADVIQSYLEFSMAAML 230 (407)
Q Consensus 159 ~a~~i~~~~~~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~--~~---~~~~~-~~~~~~~--~~~~~~~~~~~~~~~l 230 (407)
-+..+.+.+.+.+||+++++||+|+|.++|.|...+++|++. .. ..+.. ..|.+|| ++|++.|+|.|+...|
T Consensus 153 i~~~l~~~~~~~~~d~v~iiy~~f~s~~~q~~~~~~llPi~~~~~~~~~~~~~~~~~~~~Ep~~e~il~~L~~~yl~~~l 232 (291)
T PRK13426 153 LAMRLMELFLEGEIDKVELIYHHFKSMGVQVLTRETYLPIDLSQEKNAEHAGGVANDYIIEPSADTVLNDLIPKLLSLKI 232 (291)
T ss_pred HHHHHHHHHhcCCCCEEEEEecccccccccceeEEEecCCCcccccccccccCCCCceEecCCHHHHHHHHHHHHHHHHH
Confidence 456777888889999999999999999999999999999963 21 11111 2356665 8899999999999999
Q ss_pred HHHHhcCcchhhhhhcchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccc
Q psy9619 231 YYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSD 310 (407)
Q Consensus 231 y~~~~e~~~~~~~~ig~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~ 310 (407)
|.++.|+ .+||+++||.+|++|++||++ ++++|++.|||.||+ .+|.++
T Consensus 233 y~alles--------------------------~aSE~aaRm~AM~~At~Na~e----~i~~L~~~yNr~RQ~-~IT~El 281 (291)
T PRK13426 233 YTALLDS--------------------------NASEHAARMVAMQIATDNANE----LLQELTLQYNKSRQQ-AITNEL 281 (291)
T ss_pred HHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHH
Confidence 9999999 799999999999999999998 999999999999997 667777
Q ss_pred cccccc
Q psy9619 311 LPIFSL 316 (407)
Q Consensus 311 ~~llP~ 316 (407)
.+|+..
T Consensus 282 ~EIvsG 287 (291)
T PRK13426 282 LDIVGG 287 (291)
T ss_pred HHHHhh
Confidence 777654
No 25
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.64 E-value=1.9e-17 Score=163.52 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=108.7
Q ss_pred hhHHHHHHhhhcccceEEEEEeeceeccccccccccccccccc-c-cCC--CCCcccCCh--HHHHHHHHHHHHHHHHHH
Q psy9619 159 DASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASV-T-AAP--KLGVYDSLD--ADVIQSYLEFSMAAMLYY 232 (407)
Q Consensus 159 ~a~~i~~~~~~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~-~-~~~--~~~~~~~~~--~~~~~~~~~~~~~~~ly~ 232 (407)
-+..+.+.+....||+++++||+|+|.++|.|...+++|++.. . ..+ ....|+++| +++++.|+|+|+.+.||.
T Consensus 153 i~~~~~~~~~~~~~d~v~viy~~f~s~~~~~~~~~~llP~~~~~~~~~~~~~~~~~~~ep~~~~il~~L~~~yl~~~ly~ 232 (291)
T PRK13424 153 IGLEVIDGYLTGELDEVVLVYGEFVSMARQLPITLQILPIAPEEAEEEEAGASSEYIYEPSVEGLLAELLPRFIKVQIYR 232 (291)
T ss_pred HHHHHHHHHHcCCCCEEEEEeccccccccCceEEEEecCCCcccccccccccccCeeecCCHHHHHHHHHHHHHHHHHHH
Confidence 4567778888889999999999999999999999999999643 2 112 122367776 789999999999999999
Q ss_pred HHhcCcchhhhhhcchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeeccccccccccccc
Q psy9619 233 AMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLP 312 (407)
Q Consensus 233 ~~~e~~~~~~~~ig~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~ 312 (407)
++.|+ .+||+++||.+|++|++||++ ++++|++.|||.||+ .+|.++.+
T Consensus 233 al~es--------------------------~asE~aaR~~AM~~At~Na~e----~i~~L~~~yNr~RQ~-~IT~Ei~E 281 (291)
T PRK13424 233 GLLDT--------------------------SASEHAARMTAMDNATRNCDD----MIGSLTLLYNKTRQA-SITRELMD 281 (291)
T ss_pred HHHHH--------------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999 799999999999999999998 999999999999997 66777777
Q ss_pred cccc
Q psy9619 313 IFSL 316 (407)
Q Consensus 313 llP~ 316 (407)
|+..
T Consensus 282 IvsG 285 (291)
T PRK13424 282 IVGG 285 (291)
T ss_pred HHHH
Confidence 7644
No 26
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP.
Probab=99.63 E-value=2.3e-17 Score=162.59 Aligned_cols=127 Identities=21% Similarity=0.231 Sum_probs=108.0
Q ss_pred hhHHHHHHhhhcccceEEEEEeeceecccccccccccccccccc--cCCCC-CcccCCh--HHHHHHHHHHHHHHHHHHH
Q psy9619 159 DASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVT--AAPKL-GVYDSLD--ADVIQSYLEFSMAAMLYYA 233 (407)
Q Consensus 159 ~a~~i~~~~~~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~--~~~~~-~~~~~~~--~~~~~~~~~~~~~~~ly~~ 233 (407)
-+..+.+.+...+||+++++||+|+|.++|.|...+++|++... ..++. ..|.++| ++|++.++|+|+.+.||.+
T Consensus 152 i~~~i~~~~~~~~~d~v~viy~~f~~~~~~~~~~~~llP~~~~~~~~~~~~~~~~~~ep~~~~vl~~l~~~yl~~~ly~a 231 (287)
T TIGR01146 152 IADKLLDAFASGEFDEVYIVYNKFVSSISQEPTVKQLLPLSEQGPDEGFKFGQDYIFEPDEEEILDDLLPRYLESQIYGA 231 (287)
T ss_pred HHHHHHHHHHcCCCCEEEEEecccccceeeeEEEEEeeCCCcccccccccCCCCeEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888899999999999999999999999999997422 11111 2355555 8899999999999999999
Q ss_pred HhcCcchhhhhhcchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeecccccccccccccc
Q psy9619 234 MKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPI 313 (407)
Q Consensus 234 ~~e~~~~~~~~ig~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~l 313 (407)
+.|+ .+||+++||.+|.+|++||++ ++++|++.|||.||+ .+|.++.+|
T Consensus 232 ~~es--------------------------~asE~aaR~~AM~~At~Na~e----~i~~L~~~yNr~RQ~-~IT~El~EI 280 (287)
T TIGR01146 232 LLES--------------------------AASEQAARMTAMDNATDNAGD----LIKKLTLSYNRARQA-AITQELIEI 280 (287)
T ss_pred HHHH--------------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999 789999999999999999998 999999999999997 677777777
Q ss_pred ccc
Q psy9619 314 FSL 316 (407)
Q Consensus 314 lP~ 316 (407)
+..
T Consensus 281 vsG 283 (287)
T TIGR01146 281 VAG 283 (287)
T ss_pred HHH
Confidence 643
No 27
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=99.59 E-value=1.1e-16 Score=157.55 Aligned_cols=127 Identities=19% Similarity=0.223 Sum_probs=108.3
Q ss_pred hhHHHHHHhhhcccceEEEEEeeceecccccccccccccccccccCC-CCCcccCCh--HHHHHHHHHHHHHHHHHHHHh
Q psy9619 159 DASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAP-KLGVYDSLD--ADVIQSYLEFSMAAMLYYAMK 235 (407)
Q Consensus 159 ~a~~i~~~~~~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~ly~~~~ 235 (407)
-+..+.+.+...+||+++++||+|+|.+.|.|...+++|++...... ....|+++| +++++.++|+|+.+.||.++.
T Consensus 151 i~~~i~~~~~~~~~~~i~viy~~f~~~~~~~~~~~~llP~~~~~~~~~~~~~~~~ep~~~~vl~~l~~~yl~~~l~~al~ 230 (284)
T PRK05621 151 IAKKLLDAYDNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKEEEEEETSWDYEYEPDAEEILDALLPRYVESQIYQALL 230 (284)
T ss_pred HHHHHHHHHHcCCCCEEEEEecccccceecceEEEEeCCCCcccccccccCCeeeCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888899999999999999999999999999997422211 123466665 889999999999999999999
Q ss_pred cCcchhhhhhcchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeecccccccccccccccc
Q psy9619 236 EGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFS 315 (407)
Q Consensus 236 e~~~~~~~~ig~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~~~~llP 315 (407)
|| .+||+++||.+|.+|+++|++ ++++|++.|||.||+ .+|.++.+|+.
T Consensus 231 es--------------------------~asE~aaR~~AM~~At~Na~e----~i~~L~~~~Nr~RQ~-~IT~El~EIvs 279 (284)
T PRK05621 231 EN--------------------------KASEQAARMTAMKNATDNAGD----LIKKLTLVYNRARQA-AITQEITEIVG 279 (284)
T ss_pred HH--------------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 99 799999999999999999998 999999999999997 67777777764
Q ss_pred c
Q psy9619 316 L 316 (407)
Q Consensus 316 ~ 316 (407)
.
T Consensus 280 G 280 (284)
T PRK05621 280 G 280 (284)
T ss_pred H
Confidence 3
No 28
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=99.58 E-value=4.4e-17 Score=160.62 Aligned_cols=127 Identities=25% Similarity=0.247 Sum_probs=106.7
Q ss_pred hhhHHHHHHhhhcccceEEEEEeeceecccccccccccccccc----c--ccCCCCCcccCCh--HHHHHHHHHHHHHHH
Q psy9619 158 LDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLAS----V--TAAPKLGVYDSLD--ADVIQSYLEFSMAAM 229 (407)
Q Consensus 158 ~~a~~i~~~~~~~~~~~~~i~y~~f~~~v~q~~~~~~~~~~~~----~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 229 (407)
.-+..+.+.+.+.+||+++|+||+|+|.+.|.+...++||+.. . ...+....|+++| +++++.++|.|+...
T Consensus 151 ~i~~~l~~~~~~~~~d~v~viy~~~~~~~~~~~~~~~llP~~~~~~~~~~~~~~~~~~~~~ep~~~~il~~L~~~yl~~~ 230 (290)
T PF00231_consen 151 EIAEKLIDLYESGEIDEVYVIYNKFKSAVSQEPVVEQLLPLEKDIEQSSEEKWPKKSPYEFEPSPEEILDDLLPQYLFAQ 230 (290)
T ss_dssp HHHHHHHHHCCCCS-SEEEEEEEEECSTTEEEEEEEEESSS-----HHHHHTTTTGGGCCCSSTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCCCCeEEEEEEEeccceeeeEEeeehhhhhccchhhccccccCCCceEEcCCHHHHHHHHHHHHHHHH
Confidence 3466788888888999999999999999999999999999721 1 1222334566665 999999999999999
Q ss_pred HHHHHhcCcchhhhhhcchhHHHHHHhhchhhhhhhhhcCCCCcchhhhhhhhhhhccCccceEEEEEeecccccccccc
Q psy9619 230 LYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTS 309 (407)
Q Consensus 230 ly~~~~e~~~~~~~~ig~k~~~il~~~~~~~~~~~~~E~~~r~~~~~~a~~~a~~~~~~~i~~l~l~yNr~rq~is~~~~ 309 (407)
||.++.|| .+||+++||.+|.+|+++|++ ++++|++.|||.||+ .+|.+
T Consensus 231 l~~al~eS--------------------------~asE~~aR~~AM~~At~Na~e----~i~~L~~~yNr~RQa-~IT~E 279 (290)
T PF00231_consen 231 LYGALLES--------------------------KASENAARMIAMENATDNAEE----LIDKLTLEYNRARQA-EITQE 279 (290)
T ss_dssp HHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HhHHH
Confidence 99999999 789999999999999999998 999999999999997 66667
Q ss_pred cccccc
Q psy9619 310 DLPIFS 315 (407)
Q Consensus 310 ~~~llP 315 (407)
+.+|+.
T Consensus 280 i~EIvs 285 (290)
T PF00231_consen 280 IIEIVS 285 (290)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 29
>PF00700 Flagellin_C: Bacterial flagellin C-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1ORY_B 3V47_C 1IO1_A 1UCU_A 3A5X_A 3K8V_A 2ZBI_B 3K8W_A.
Probab=69.98 E-value=29 Score=27.59 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=46.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhh
Q psy9619 353 KEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISG 403 (407)
Q Consensus 353 leS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIVsG 403 (407)
+.+..++.++|...++.+.++.+.....++-...+.+-.-+.+++.++...
T Consensus 11 v~~~~a~lGa~~~~l~~~~~~~~~~~~~l~~~~s~i~d~D~a~~~~~l~~~ 61 (86)
T PF00700_consen 11 VSSARAQLGARQNRLESAKDRLSNQSENLTASLSNIEDADMAEAITNLTQA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999987643
No 30
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=27.91 E-value=1.1e+02 Score=26.30 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=36.2
Q ss_pred CCcEEEEEEcCCcccc--chhhHHHHHHHHHHHHhcCCcEEEEEEccccHHHHH
Q psy9619 85 SPKELLIAVTSDRGLC--GAVHTSVARWIRNELQTKGDKVLVITIGDKSRAILQ 136 (407)
Q Consensus 85 ~~~~~~IvitSDrGLC--G~fN~~i~k~~~~~l~~~~~~~~li~IG~Kg~~~l~ 136 (407)
...+.+++++++.+-. +..+...++.+.+.+.-......+++||+-|..-++
T Consensus 41 eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 41 ERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred cCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEe
Confidence 4556777776665544 567778888888777643445778999999975554
No 31
>smart00216 VWD von Willebrand factor (vWF) type D domain. Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.
Probab=27.09 E-value=21 Score=31.51 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=9.4
Q ss_pred CccccchhhHH
Q psy9619 96 DRGLCGAVHTS 106 (407)
Q Consensus 96 DrGLCG~fN~~ 106 (407)
=+||||.||.+
T Consensus 142 ~~GLCGn~ng~ 152 (162)
T smart00216 142 TCGLCGNFDGE 152 (162)
T ss_pred eeEccCCCCCC
Confidence 37999999976
No 32
>PF03598 CdhC: CO dehydrogenase/acetyl-CoA synthase complex beta subunit; InterPro: IPR004461 The carbon monoxide dehydrogenase alpha subunit (1.2.99.2 from EC) catalyses the interconversion of CO and CO2 and the synthesis of acteyl-coA from the methylated corrinoid/iron sulphur protein, CO and CoA. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process; PDB: 2Z8Y_O 1MJG_N 3GIT_A 3S2X_B 3I01_O 3I04_N 1OAO_C 1RU3_A.
Probab=25.88 E-value=31 Score=36.11 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=13.9
Q ss_pred EEEEcCCc-cccchhhHHHHHHHH
Q psy9619 90 LIAVTSDR-GLCGAVHTSVARWIR 112 (407)
Q Consensus 90 ~IvitSDr-GLCG~fN~~i~k~~~ 112 (407)
+-|||.|| ||||++|=-=.|++.
T Consensus 200 VCvvtPeR~~lCGaisWlDakAa~ 223 (411)
T PF03598_consen 200 VCVVTPERPGLCGAISWLDAKAAY 223 (411)
T ss_dssp -EEEBTTB--TTSS--HHHHHHHH
T ss_pred eEEECCCCcccccccchhhhhhhh
Confidence 44679998 999999976555543
No 33
>TIGR00316 cdhC CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit. Nomenclature follows the description for Methanosarcina thermophila. The CO-methylating acetyl-CoA synthase is considered the defining enzyme of the Wood-Ljungdahl pathway, used for acetate catabolism by sulfate reducing bacteria but for acetate biosynthesis by acetogenic bacteria such as oorella thermoacetica (f. Clostridium thermoaceticum).
Probab=25.47 E-value=1.1e+02 Score=32.70 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=16.9
Q ss_pred EEEEcCCc-cccchhhHHHHHHHH
Q psy9619 90 LIAVTSDR-GLCGAVHTSVARWIR 112 (407)
Q Consensus 90 ~IvitSDr-GLCG~fN~~i~k~~~ 112 (407)
+-|||.|| ||||++|=-=.|++.
T Consensus 199 VCvvtPeR~~lCGaisW~D~rAa~ 222 (458)
T TIGR00316 199 VCIVTPDRPSLCGAINWFDARAAA 222 (458)
T ss_pred eEEECCCCcccccccchhhhhhhh
Confidence 44679998 999999865555443
No 34
>PRK04456 acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed
Probab=24.39 E-value=39 Score=35.83 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=17.0
Q ss_pred EEEEcCCc-cccchhhHHHHHHHH
Q psy9619 90 LIAVTSDR-GLCGAVHTSVARWIR 112 (407)
Q Consensus 90 ~IvitSDr-GLCG~fN~~i~k~~~ 112 (407)
+-|||.|| ||||++|=-=.|++.
T Consensus 202 VCvvtPeR~~lCGaisW~D~rAa~ 225 (463)
T PRK04456 202 VCVITPDRPSLCGAINWFDGRAAA 225 (463)
T ss_pred eEEECCCCcccccccchhhhhhhh
Confidence 44679998 999999865555443
No 35
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=23.78 E-value=1.4e+02 Score=25.70 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=25.8
Q ss_pred EEEEEcCCccccchhhHHHHHHHHHHHHhcCCcEEEEEEccccH
Q psy9619 89 LLIAVTSDRGLCGAVHTSVARWIRNELQTKGDKVLVITIGDKSR 132 (407)
Q Consensus 89 ~~IvitSDrGLCG~fN~~i~k~~~~~l~~~~~~~~li~IG~Kg~ 132 (407)
..|++-|| |+.++.+..++ ......+..+..+..+.||.-+.
T Consensus 96 ~~ivliTD-G~~~~~~~~~~-~~~~~~~~~~~~v~~~~~g~~~~ 137 (152)
T cd01462 96 ADIVLITD-GYEGGVSDELL-REVELKRSRVARFVALALGDHGN 137 (152)
T ss_pred ceEEEECC-CCCCCCCHHHH-HHHHHHHhcCcEEEEEEecCCCC
Confidence 46677778 77888888887 33333333345566677777443
No 36
>KOG3287|consensus
Probab=23.61 E-value=1.6e+02 Score=28.54 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=35.3
Q ss_pred cHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q psy9619 22 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKP 63 (407)
Q Consensus 22 ~lkeir~RI~Sv~~t~kITkAMkmVAaaKlrka~~~~~~~r~ 63 (407)
++.+|.++|.+|++ .|+++|.+-+-+|.++|+++......
T Consensus 154 kl~di~~~i~~i~~--nl~k~~~~q~~lRa~EaRDr~L~esN 193 (236)
T KOG3287|consen 154 KLDDIEDSIGTIKN--NLNKMWQYQALLRAREARDRNLQESN 193 (236)
T ss_pred cHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHhcc
Confidence 68899999999986 79999999999999999988776554
No 37
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=23.56 E-value=1.5e+02 Score=29.68 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=33.5
Q ss_pred CcEEEEEEcCCccccchhhHHHHHHHHHHHHhcCCcEEEEEEccccHHHHHH
Q psy9619 86 PKELLIAVTSDRGLCGAVHTSVARWIRNELQTKGDKVLVITIGDKSRAILQR 137 (407)
Q Consensus 86 ~~~~~IvitSDrGLCG~fN~~i~k~~~~~l~~~~~~~~li~IG~Kg~~~l~~ 137 (407)
+..++| +|+ |.|+.+-++++.+++.+++.|++..++.+|+--.+.|..
T Consensus 210 ~~~GIi-v~t---l~~q~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~n 257 (307)
T PF01866_consen 210 KTFGII-VGT---LGGQGYLELIKRLKKLLKKAGKKSYTLSVGEINPAKLAN 257 (307)
T ss_dssp -EEEEE-EE----STTT--HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTT
T ss_pred CEEEEE-Eec---CCCCCCHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhc
Confidence 444554 444 678899999999999999989999999999988777764
No 38
>PF00094 VWD: von Willebrand factor type D domain; InterPro: IPR001846 A family of growth regulators (originally called cef10, connective tissue growth factor, fisp-12, cyr61, or, alternatively, beta IG-M1 and beta IG-M2), all belong to immediate-early genes expressed after induction by growth factors or certain oncogenes. Sequence analysis of this family revealed the presence of four distinct modules. Each module has homologues in other extracellular mosaic proteins such as Von Willebrand factor, slit, thrombospondins, fibrillar collagens, IGF-binding proteins and mucins. Classification and analysis of these modules suggests the location of binding regions and, by analogy to better characterised modules in other proteins, sheds some light onto the structure of this new family []. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. One of the functions of von Willebrand factor (vWF) is to serve as a carrier of clotting factor VIII (FVIII). The native conformation of the D' domain of vWF is not only required for factor VIII (FVIII) binding but also for normal multimerisation and optimal secretion. The interaction between blood clotting factor VIII and VWF is necessary for normal survival of blood clotting factor VIII in blood circulation. The VWFD domain is a highly structured region, in which the first conserved Cys has been found to form a disulphide bridge with the second conserved one [].
Probab=22.74 E-value=31 Score=29.80 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=9.2
Q ss_pred CccccchhhHH
Q psy9619 96 DRGLCGAVHTS 106 (407)
Q Consensus 96 DrGLCG~fN~~ 106 (407)
=.||||.||.+
T Consensus 138 t~GLCG~~dg~ 148 (159)
T PF00094_consen 138 TCGLCGNFDGE 148 (159)
T ss_pred cccccCCCCCC
Confidence 35999999976
No 39
>PF02870 Methyltransf_1N: 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; InterPro: IPR008332 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources []. This group of proteins are characterised by having an N-terminal ribonuclease-like domain associated with 6-O-methylguanine DNA methyltransferase activity (IPR001497 from INTERPRO).; GO: 0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A.
Probab=22.15 E-value=42 Score=26.05 Aligned_cols=12 Identities=50% Similarity=1.182 Sum_probs=10.3
Q ss_pred EEEEcCCccccc
Q psy9619 90 LIAVTSDRGLCG 101 (407)
Q Consensus 90 ~IvitSDrGLCG 101 (407)
+.++++|+||||
T Consensus 14 l~l~a~e~gL~~ 25 (77)
T PF02870_consen 14 LLLAASEKGLCG 25 (77)
T ss_dssp EEEEEETTCEEE
T ss_pred EEEEEECCeEEE
Confidence 677899999996
Done!