RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9619
(407 letters)
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding,
F(O), F(1), mitochondr inner membrane, transmembrane;
HET: ANP; 3.01A {Saccharomyces cerevisiae}
Length = 311
Score = 222 bits (568), Expect = 3e-70
Identities = 80/242 (33%), Positives = 137/242 (56%), Gaps = 10/242 (4%)
Query: 5 TALLVPQCMQQQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPI 64
A + R ATLK + +RLKS+KNI+KIT++MK+V++ + ++AE+ +AK +
Sbjct: 18 QAQVGILYKTNPVRTYATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKM 77
Query: 65 GAGASAFYSKAEVTTPE----GTESPKELLIAVTSDRGLCGAVHTSVARWIRNELQTKGD 120
FY AE + T +PKEL++A+TSD+GLCG++H+ +A+ +R L
Sbjct: 78 DEAEQLFYKNAETKNLDVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLN-DQP 136
Query: 121 KVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET----SKYNFTSGK 176
++TIGDK + L R + NNI L+ N +G+ PTF +++ +A + +
Sbjct: 137 NADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKIS 196
Query: 177 IIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD-SLDADVIQSYLEFSMAAMLYYAMK 235
I YN S +S+ S+ PIF+ ++ +P G ++ DA+V + E+++A + AM
Sbjct: 197 IFYNDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMA 256
Query: 236 EG 237
+G
Sbjct: 257 QG 258
Score = 214 bits (547), Expect = 4e-67
Identities = 67/179 (37%), Positives = 110/179 (61%), Gaps = 5/179 (2%)
Query: 234 MKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET----SKYN 289
+ + ++TIGDK + L R + NNI L+ N +G+ PTF +++ +A +
Sbjct: 132 LNDQPNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGT 191
Query: 290 FTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD-SLDADVIQSYLEFSMAAML 348
+ I YN S +S+ S+ PIF+ ++ +P G ++ DA+V + E+++A +
Sbjct: 192 YPKISIFYNDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQM 251
Query: 349 YYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407
AM +G +E S+R +MDNASKNAG+MI + ++ +NRTRQAVIT EL++II+GAS+L
Sbjct: 252 LTAMAQGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 310
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G*
1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G*
1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G*
2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ...
Length = 272
Score = 221 bits (565), Expect = 4e-70
Identities = 116/222 (52%), Positives = 163/222 (73%), Gaps = 7/222 (3%)
Query: 21 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTTP 80
ATLK I+ RLKS+KNIQKIT+SMKMV+AAKY RAERELK A+ G G+ A Y KA++ TP
Sbjct: 1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTP 60
Query: 81 EGTESPKELLIAVTSDRGLCGAVHTSVARWIRN---ELQTKGDKVLVITIGDKSRAILQR 137
E + K L+I V+SDRGLCGA+H+SVA+ +++ L G +V +I +GDK R+IL R
Sbjct: 61 E--DKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHR 118
Query: 138 LYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNKFKSVVSYTTSDLPI 195
+ + ++ EVGRRPPTF DAS +A E S Y F G II+N+F+SV+SY T + PI
Sbjct: 119 THSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPI 178
Query: 196 FSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEG 237
FSL ++++A + +YD +DADV+++Y E+S+A ++YY++KE
Sbjct: 179 FSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKES 220
Score = 219 bits (560), Expect = 2e-69
Identities = 101/175 (57%), Positives = 136/175 (77%), Gaps = 2/175 (1%)
Query: 235 KEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTS 292
G +V +I +GDK R+IL R + + ++ EVGRRPPTF DAS +A E S Y F
Sbjct: 98 AAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDE 157
Query: 293 GKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAM 352
G II+N+F+SV+SY T + PIFSL ++++A + +YD +DADV+++Y E+S+A ++YY++
Sbjct: 158 GSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSL 217
Query: 353 KEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407
KE SEQS+RMT+MDNASKNA EMI+KLTLTFNRTRQAVIT+ELIEIISGA+AL
Sbjct: 218 KESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP
synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A
{Saccharomyces cerevisiae} PDB: 2wpd_G* 3fks_G 2hld_G*
3oeh_G* 3ofn_G* 3zry_G* 3oe7_G*
Length = 278
Score = 215 bits (549), Expect = 1e-67
Identities = 67/179 (37%), Positives = 110/179 (61%), Gaps = 5/179 (2%)
Query: 234 MKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET----SKYN 289
+ + ++TIGDK + L R + NNI L+ N +G+ PTF +++ +A +
Sbjct: 99 LNDQPNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGT 158
Query: 290 FTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD-SLDADVIQSYLEFSMAAML 348
+ I YN S +S+ S+ PIF+ ++ +P G ++ DA+V + E+++A +
Sbjct: 159 YPKISIFYNDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQM 218
Query: 349 YYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASAL 407
AM +G +E S+R +MDNASKNAG+MI + ++ +NRTRQAVIT EL++II+GAS+L
Sbjct: 219 LTAMAQGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 277
Score = 212 bits (541), Expect = 1e-66
Identities = 78/226 (34%), Positives = 134/226 (59%), Gaps = 10/226 (4%)
Query: 21 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTTP 80
ATLK + +RLKS+KNI+KIT++MK+V++ + ++AE+ +AK + FY AE
Sbjct: 1 ATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNL 60
Query: 81 E----GTESPKELLIAVTSDRGLCGAVHTSVARWIRNELQTKGDKVLVITIGDKSRAILQ 136
+ T +PKEL++A+TSD+GLCG++H+ +A+ +R L ++TIGDK + L
Sbjct: 61 DVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLN-DQPNADIVTIGDKIKMQLL 119
Query: 137 RLYGNNIILAANEVGRRPPTFLDASKVAQET----SKYNFTSGKIIYNKFKSVVSYTTSD 192
R + NNI L+ N +G+ PTF +++ +A + + I YN S +S+ S+
Sbjct: 120 RTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSE 179
Query: 193 LPIFSLASVTAAPKLGVYD-SLDADVIQSYLEFSMAAMLYYAMKEG 237
PIF+ ++ +P G ++ DA+V + E+++A + AM +G
Sbjct: 180 KPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQG 225
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1}
Length = 286
Score = 148 bits (375), Expect = 8e-42
Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 21/187 (11%)
Query: 235 KEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK 294
+G + + IG K + + GN ++ +G P + + + + + G+
Sbjct: 107 DKGVQCDLAMIGSKGVSFFNSVGGN-VVAQVTGMGDNP-SLSELIGPVKVMLQA-YDEGR 163
Query: 295 -----IIYNKFKSVVSYTTSD---LPIFSLASVTAAPKLGVY------DSLDADVIQSYL 340
I+ NKF + +S + LP+ + K Y +L +++ Y+
Sbjct: 164 LDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDTLLRRYV 223
Query: 341 EFSMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEI 400
E + +Y + E SEQ++RM +M A+ N G +I++L L +N+ RQA IT+EL EI
Sbjct: 224 E----SQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEI 279
Query: 401 ISGASAL 407
+SGA+A+
Sbjct: 280 VSGAAAV 286
Score = 125 bits (316), Expect = 2e-33
Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 24/185 (12%)
Query: 21 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKP--------IGAGASAFY 72
A K I ++ SV+N QKIT++M+MV+A+K +++ + A++P IG A
Sbjct: 1 AGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHG-- 58
Query: 73 SKAEVTTP--EGTESPKELLIAVTSDRGLCGAVHTSVARWIRN---ELQTKGDKVLVITI 127
E P E + + + V++DRGLCG ++ ++ + + KG + + I
Sbjct: 59 -NLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMI 117
Query: 128 GDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK-----IIYNKF 182
G K + + G N++ +G P+ + + + + G+ I+ NKF
Sbjct: 118 GSKGVSFFNSVGG-NVVAQVTGMGDN-PSLSELIGPVKVMLQA-YDEGRLDKLYIVSNKF 174
Query: 183 KSVVS 187
+ +S
Sbjct: 175 INTMS 179
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP}
Length = 286
Score = 143 bits (362), Expect = 6e-40
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 19/185 (10%)
Query: 235 KEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK 294
+ D+ ++ +G K R ++ ++ + P + + +AQ F
Sbjct: 108 QSKDEYVIFAVGRKGRDFFKKRGYP-VVEEVTGISDTP-SLTEIQDIAQSAIGM-FADET 164
Query: 295 -----IIYNKFKSVVSYTTSD---LPIFSLASVTAAPKLGVY----DSLDADVIQSYLEF 342
I YN+F S + + LP+ S + Y +S+ ++ Y E
Sbjct: 165 FDKLTIFYNEFVSPIVQRPVEKQLLPLTSEEVLDGPVSAYEYEPDSESVLEVLLPKYAE- 223
Query: 343 SMAAMLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIIS 402
++Y A+ + SE +RMT+M NA+ NA EM+E LTL FNR RQA IT+E+ EI++
Sbjct: 224 ---TLIYSALLDAKASEFGARMTAMGNATDNATEMLETLTLQFNRARQAAITQEIAEIVA 280
Query: 403 GASAL 407
GA+AL
Sbjct: 281 GANAL 285
Score = 126 bits (319), Expect = 9e-34
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 20 MATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKP--------IGAGASAF 71
M ++ I R++SVKN ++IT++MKMV+AAK RA+ + A+P I + A+
Sbjct: 1 MQGMREIKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSIAAG- 59
Query: 72 YSKAEVTTP--EGTESPKELLIAVTSDRGLCGAVHTSVARWIRN---ELQTKGDKVLVIT 126
+ + P E K + +TSDRGL G + ++ R + E D+ ++
Sbjct: 60 --TKDFSHPMLEARPVKKTGYMVITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFA 117
Query: 127 IGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK-----IIYNK 181
+G K R ++ ++ + P+ + +AQ F I YN+
Sbjct: 118 VGRKGRDFFKKRGY-PVVEEVTGISDT-PSLTEIQDIAQSAIGM-FADETFDKLTIFYNE 174
Query: 182 FKSVVS 187
F S +
Sbjct: 175 FVSPIV 180
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A
{Escherichia coli} SCOP: c.49.2.1
Length = 230
Score = 104 bits (263), Expect = 2e-26
Identities = 38/168 (22%), Positives = 76/168 (45%), Gaps = 24/168 (14%)
Query: 38 KITQSMKMVSAAKYTRAERELKAAKP--------IGAGASAFYSKAEVTTP--EGTESPK 87
KIT++M+MV+A+K +++ + A++P IG A E P E + +
Sbjct: 1 KITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGN---LEYKHPYLEDRDVKR 57
Query: 88 ELLIAVTSDRGLCGAVHTSVARWIRN---ELQTKGDKVLVITIGDKSRAILQRLYGNNII 144
+ V++DRGLCG ++ ++ + + KG + + IG K + + G N++
Sbjct: 58 VGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGG-NVV 116
Query: 145 LAANEVGRRPPTFLDASKVAQETSKYNFTSGK-----IIYNKFKSVVS 187
+G P+ + + + + G+ I+ NKF + +S
Sbjct: 117 AQVTGMGDN-PSLSELIGPVKVMLQA-YDEGRLDKLYIVSNKFINTMS 162
Score = 68.7 bits (169), Expect = 1e-13
Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 21/147 (14%)
Query: 235 KEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK 294
+G + + IG K + + GN ++ +G P + + + + + G+
Sbjct: 90 DKGVQCDLAMIGSKGVSFFNSVGGN-VVAQVTGMGDNP-SLSELIGPVKVMLQA-YDEGR 146
Query: 295 -----IIYNKFKSVVSYTTSD---LPIFSLASVTAAPKLGVY------DSLDADVIQSYL 340
I+ NKF + +S + LP+ + K Y +L +++ Y+
Sbjct: 147 LDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDTLLRRYV 206
Query: 341 EFSMAAMLYYAMKEGACSEQSSRMTSM 367
E + +Y + E SEQ++RM +M
Sbjct: 207 E----SQVYQGVVENLASEQAARMVAM 229
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.7 bits (157), Expect = 3e-11
Identities = 73/461 (15%), Positives = 144/461 (31%), Gaps = 170/461 (36%)
Query: 23 LKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTTPEG 82
+ A S R ++ + + + +V A + A + L+ F PE
Sbjct: 1 MDAYSTRPLTLSH-GSLEHVL-LVPTASFFIASQ-LQEQ---------FNK----ILPEP 44
Query: 83 TE---------SPKELL------IAVTSDRG--------------------LCGA-VHTS 106
TE +P EL+ ++ + L G +H
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 107 VARWIRNELQTKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPT------FLDA 160
A +L + D LV K++ +++ A + +RP A
Sbjct: 105 AA-----KLLQENDTTLV-----KTKELIKNYI------TARIMAKRPFDKKSNSALFRA 148
Query: 161 SK------VAQ-----ETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLG- 208
VA T Y F + +Y + +V + +A L
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDY-FEELRDLYQTYHVLVG------DLIK----FSAETLSE 197
Query: 209 -VYDSLDA--------DVIQ-----------SYL---EFSM-----AAMLYYAMKEGDKV 240
+ +LDA ++++ YL S + +Y + K+
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA--KL 255
Query: 241 LVITIGDKSRAILQRL--YGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYN 298
L T G+ R+ L+ + ++ A A +A+ S +F +
Sbjct: 256 LGFTPGE-LRSYLKGATGHSQGLVTAV------------A--IAETDSWESF------FV 294
Query: 299 KFKSVVSYTTSDLPIFS--LASVTAAPKLGVYDSLDADVIQSYLEF---SMAAMLYYAMK 353
+ ++ +F + A P SL +++ LE + ML ++
Sbjct: 295 SVRKAITV------LFFIGVRCYEAYPNT----SLPPSILEDSLENNEGVPSPML--SIS 342
Query: 354 EGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVIT 394
EQ + N+ AG+ +E ++L N + V++
Sbjct: 343 -NLTQEQVQDYVNKTNSHLPAGKQVE-ISL-VNGAKNLVVS 380
Score = 61.2 bits (148), Expect = 4e-10
Identities = 70/404 (17%), Positives = 127/404 (31%), Gaps = 147/404 (36%)
Query: 37 QKITQSMKMVSAAKYTRAERELKAAKPIG-AGASAFYSKAEVTTPEG------------- 82
+ ++ +++ Y A K +P SA + EG
Sbjct: 114 TTLVKTKELIKN--YITARIMAK--RPFDKKSNSALFRAVG----EGNAQLVAIFGGQGN 165
Query: 83 TESP-KEL-------------LIAVTSDRGLCGAVHTS------------VARWIRNELQ 116
T+ +EL LI +++ L + T+ + W+ N
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAET-LSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 117 TKGDKVLVIT------IGDKSRAILQRLYGNNIILAANEVGRRPPTFLD----------- 159
T L+ IG ++Q + ++ A +G P
Sbjct: 225 TPDKDYLLSIPISCPLIG-----VIQLA---HYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 160 ---ASKVAQETSKYNFT--SGKIIYNKF----KSVVSYTTSDLPIFSLA-SV-----TAA 204
A +A+ S +F K I F + +Y + LP L S+ +
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 205 PKLGVYDSLDADVIQSYLE-----FSMAAMLYYAMKEGDKVLVITIGD-KSRAILQRLYG 258
P L + + L + +Q Y+ + ++ G K LV++ G +S LYG
Sbjct: 337 PMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS-GPPQS------LYG 388
Query: 259 NNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGKI-IYNKFKSVVSYTTSDLPIFS-- 315
N+ L + P+ LD S++ F+ K+ N+F LP+ S
Sbjct: 389 LNLTLR----KAKAPSGLDQSRIP-------FSERKLKFSNRF----------LPVASPF 427
Query: 316 ----LASVTA--------------APKLG--VYDSLDADVIQSY 339
L + A + VYD+ D ++
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Score = 49.3 bits (117), Expect = 2e-06
Identities = 53/324 (16%), Positives = 93/324 (28%), Gaps = 130/324 (40%)
Query: 21 ATLKAISIRLKSVKNIQKITQSMKMVSAAK-----YTRAERELKAAKPIGAGASAFYS-- 73
+ LK + + + + ++ + + + IG Y
Sbjct: 265 SYLKGATGHSQGL-------VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 74 -------KAEVTTPEGTESP---------KELLIAVTSDRG-LCGAVHTSVARWIRNELQ 116
+ + EG SP +++ V L ++ + N
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS--LVN--- 372
Query: 117 TKGDKVLVITIGD-KSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSG 175
G K LV++ G +S LYG N+ L + P+ LD S++ F+
Sbjct: 373 --GAKNLVVS-GPPQS------LYGLNLTLR----KAKAPSGLDQSRIP-------FSER 412
Query: 176 KI-IYNKFKSVVSYTTSDLPIFS------LASVTA--------------APKLG--VYDS 212
K+ N+F LP+ S L + A + VYD+
Sbjct: 413 KLKFSNRF----------LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 213 LDADVIQSY------------------------------LEF-----SMAAMLYYAMKEG 237
D ++ L+F S +L + K+G
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 238 DKVLVITIG--DKSRAILQRLYGN 259
V VI G D + YG
Sbjct: 523 TGVRVIVAGTLDINPD---DDYGF 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 8e-06
Identities = 48/335 (14%), Positives = 99/335 (29%), Gaps = 109/335 (32%)
Query: 110 WIRNELQTKG-DKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETS 168
++ + ++T+ ++ + + R RLY +N + A V R +L + E
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAKYNV-SRLQPYLKLRQALLELR 148
Query: 169 KYNFTSGKIIYNKF---KSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFS 225
+I K+ +A D + +Q ++F
Sbjct: 149 P---AKNVLIDGVLGSGKTW------------VAL----------DVCLSYKVQCKMDFK 183
Query: 226 MAAMLYYAMKEGDKVLVITIGDKSRA-----ILQRLY-------------GNNIILAANE 267
+ ++ + + + + +LQ+L +NI L +
Sbjct: 184 I----FW----------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 268 VGRRPPTFLDASKVAQETSKY--------NFTSGKIIYNKF----KSVVSYTTSDLPIFS 315
+ L ++ Y N + K N F K ++ TT
Sbjct: 230 IQAELRRLL-------KSKPYENCLLVLLNVQNAKAW-NAFNLSCKILL--TTRF----- 274
Query: 316 LASVTAA--PKLGVYDSLDADVIQSYLEFSMAAML--YYAMKEGACSEQ----SSRMTSM 367
VT + SLD + + ++L Y + + + R S+
Sbjct: 275 -KQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 368 DNASKNAGEMIEKLTLTFNRTRQAVITRELIEIIS 402
E I T++ + V +L II
Sbjct: 333 ------IAESIRDGLATWDNWKH-VNCDKLTTIIE 360
Score = 35.2 bits (80), Expect = 0.038
Identities = 51/305 (16%), Positives = 88/305 (28%), Gaps = 87/305 (28%)
Query: 1 MFSKTALLVPQCMQQQTRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRA-ERELK 59
+ K PQ + ++ +SI +S+++ + K V+ K T E L
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 60 AAKPIGAGASAFYSKAEVTTPEGTESPKELLIAVTSDRGLCGAVHTSVARWIRNELQTKG 119
+P A + + V P P LL + V S + N+L
Sbjct: 365 VLEP--AEYRKMFDRLSVF-PPSAHIPTILLSL------IWFDVIKSDVMVVVNKLHKYS 415
Query: 120 -----DKVLVITIGD--------------KSRAILQRLY-------GNNII--------- 144
K I+I R+I+ Y +++I
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFY 474
Query: 145 ------LAANEVGRR----PPTFLDASKVAQETSKYNFTSGKIIY--------------- 179
L E R FLD + F KI +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLD----------FRFLEQKIRHDSTAWNASGSILNTL 524
Query: 180 NKFKSVVSYTTSDLPIFSL---ASVTAAPKLG--VYDSLDADVIQSYLEFSMAAMLYYAM 234
+ K Y + P + A + PK+ + S D+++ L A+ A
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 235 KEGDK 239
K+ +
Sbjct: 585 KQVQR 589
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.73
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 12/41 (29%)
Query: 37 QKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEV 77
+K Q++K + + LK A A A KA +
Sbjct: 18 EK--QALK--------KLQASLKLYADDSAPALAI--KATM 46
Score = 27.2 bits (59), Expect = 6.1
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 197 SLASVTAAPKLGVY--DSLDADVIQSYLE 223
+L + A+ KL Y DS A I++ +E
Sbjct: 21 ALKKLQASLKL--YADDSAPALAIKATME 47
Score = 27.2 bits (59), Expect = 6.1
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 315 SLASVTAAPKLGVY--DSLDADVIQSYLE 341
+L + A+ KL Y DS A I++ +E
Sbjct: 21 ALKKLQASLKL--YADDSAPALAIKATME 47
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; 2.00A {Thermus thermophilus} SCOP:
c.134.1.1
Length = 227
Score = 29.3 bits (66), Expect = 1.9
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 2/57 (3%)
Query: 223 EFSMAAMLYYAMKEGDKVLVITI--GDKSRAILQRLYGNNIILAANEVGRRPPTFLD 277
E L A EG ++ + G+ + A+ +G L
Sbjct: 15 ELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILGLDFRGNLG 71
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 2.80A {Vibrio parahaemolyticus}
Length = 213
Score = 29.2 bits (66), Expect = 2.2
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 15/66 (22%)
Query: 75 AEVTTPEGTESPKELLIAVTSDRGLCGAVHTSVARWIRNELQTKGDKVLVITIGDKSRAI 134
A + P ES S R V+R + D +L++T G R I
Sbjct: 112 AHHSLPNA-ESLSTF-----SQR---------VSRAWSQIINDINDNLLIVTHGGVIRII 156
Query: 135 LQRLYG 140
L + G
Sbjct: 157 LAHVLG 162
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 28.5 bits (64), Expect = 2.8
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 85 SPKELLIAVTSDRGLCGAVHTSVARWIRNELQTKGDKVLVITIGD---KSRAILQR 137
P L+A++ G G+ ++++ + L +G V+ + D +L+
Sbjct: 19 QPGRQLVALS---GAPGSGKSTLSNPLAAALSAQGLPAEVVPM-DGFHLDNRLLEP 70
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote
structure initiative; 1.75A {Saccharomyces cerevisiae}
PDB: 3lg2_A 3oi7_A* 3ll4_A*
Length = 265
Score = 28.2 bits (63), Expect = 4.5
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 79 TPEGTESPKELLIAVTSDRGLCGAVHTSVARWIRNELQTKGDKVLVITIGDKSRAILQRL 138
E E+ ++ R L A+ +++ + + ++V G R
Sbjct: 134 GCENGETTQQ-----IGLR-LSRAIARIQNLHRKHQSEGRASDIMVFAHGHALRYFAAIW 187
Query: 139 YG 140
+G
Sbjct: 188 FG 189
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Length = 139
Score = 26.7 bits (59), Expect = 9.9
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 209 VYDSLDADVI------QSYLEFSMAAMLYYAM----KEGDKVLVITIGDKSRAILQRLYG 258
+ +++ + + + + + AM + +E ++T GD+S +L L
Sbjct: 13 IREAVSGEYLIEPREEKMVEQVVIGAMSPQSALRYLREARNAALVTGGDRSDLLLTALEM 72
Query: 259 NNI 261
N+
Sbjct: 73 PNV 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.129 0.345
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,691,906
Number of extensions: 335390
Number of successful extensions: 793
Number of sequences better than 10.0: 1
Number of HSP's gapped: 757
Number of HSP's successfully gapped: 30
Length of query: 407
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 311
Effective length of database: 4,021,377
Effective search space: 1250648247
Effective search space used: 1250648247
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)