RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9619
         (407 letters)



>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 272

 Score =  138 bits (347), Expect = 1e-38
 Identities = 101/181 (55%), Positives = 136/181 (75%), Gaps = 2/181 (1%)

Query: 229 MLYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TS 286
                   G +V +I +GDK R+IL R + +  ++   EVGRRPPTF DAS +A E   S
Sbjct: 92  EAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNS 151

Query: 287 KYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYLEFSMAA 346
            Y F  G II+N+F+SV+SY T + PIFSL ++++A  + +YD +DADV+++Y E+S+A 
Sbjct: 152 GYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLAN 211

Query: 347 MLYYAMKEGACSEQSSRMTSMDNASKNAGEMIEKLTLTFNRTRQAVITRELIEIISGASA 406
           ++YY++KE   SEQS+RMT+MDNASKNA EMI+KLTLTFNRTRQAVIT+ELIEIISGA+A
Sbjct: 212 IIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAA 271

Query: 407 L 407
           L
Sbjct: 272 L 272



 Score =  120 bits (302), Expect = 3e-32
 Identities = 115/221 (52%), Positives = 162/221 (73%), Gaps = 7/221 (3%)

Query: 21  ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERELKAAKPIGAGASAFYSKAEVTTP 80
           ATLK I+ RLKS+KNIQKIT+SMKMV+AAKY RAERELK A+  G G+ A Y KA++ TP
Sbjct: 1   ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTP 60

Query: 81  EGTESPKELLIAVTSDRGLCGAVHTSVARWIRNEL---QTKGDKVLVITIGDKSRAILQR 137
              +  K L+I V+SDRGLCGA+H+SVA+ +++E       G +V +I +GDK R+IL R
Sbjct: 61  --EDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHR 118

Query: 138 LYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNKFKSVVSYTTSDLPI 195
            + +  ++   EVGRRPPTF DAS +A E   S Y F  G II+N+F+SV+SY T + PI
Sbjct: 119 THSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPI 178

Query: 196 FSLASVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKE 236
           FSL ++++A  + +YD +DADV+++Y E+S+A ++YY++KE
Sbjct: 179 FSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKE 219


>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit
           {Escherichia coli [TaxId: 562]}
          Length = 230

 Score = 89.1 bits (220), Expect = 4e-21
 Identities = 41/218 (18%), Positives = 85/218 (38%), Gaps = 19/218 (8%)

Query: 38  KITQSMKMVSAAKYTRAERELKAAKP--------IGAGASAFYSKAEVTTPEGTESPKEL 89
           KIT++M+MV+A+K  +++  + A++P        IG  A            E  +  +  
Sbjct: 1   KITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYL-EDRDVKRVG 59

Query: 90  LIAVTSDRGLCGAVHTSVARWIRNELQ---TKGDKVLVITIGDKSRAILQRLYGNNIILA 146
            + V++DRGLCG ++ ++ + +  E++    KG +  +  IG K  +    + GN +   
Sbjct: 60  YLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQV 119

Query: 147 ANEVGRRPPTFLDA--SKVAQETSKYNFTSGKIIYNKFKSV-----VSYTTSDLPIFSLA 199
                    + L      + Q   +       I+ NKF +             LP     
Sbjct: 120 TGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDD 179

Query: 200 SVTAAPKLGVYDSLDADVIQSYLEFSMAAMLYYAMKEG 237
            +       +Y+     ++ + L   + + +Y  + E 
Sbjct: 180 DLKHKSWDYLYEPDPKALLDTLLRRYVESQVYQGVVEN 217



 Score = 54.8 bits (131), Expect = 3e-09
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 7/147 (4%)

Query: 228 AMLYYAMKEGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDA--SKVAQET 285
           A +     +G +  +  IG K  +    + GN +            + L      + Q  
Sbjct: 83  AEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAY 142

Query: 286 SKYNFTSGKIIYNKFKSV-----VSYTTSDLPIFSLASVTAAPKLGVYDSLDADVIQSYL 340
            +       I+ NKF +             LP      +       +Y+     ++ + L
Sbjct: 143 DEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDTLL 202

Query: 341 EFSMAAMLYYAMKEGACSEQSSRMTSM 367
              + + +Y  + E   SEQ++RM +M
Sbjct: 203 RRYVESQVYQGVVENLASEQAARMVAM 229


>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase,
           QPCT {Human (Homo sapiens) [TaxId: 9606]}
          Length = 329

 Score = 26.3 bits (57), Expect = 6.5
 Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 6/53 (11%)

Query: 104 HTSVARWIRNELQTKGDKVLVITIGDKSRAILQRLYGNNIILAANEVGRRPPT 156
             +  + I   +Q      ++      S+        +NII          PT
Sbjct: 52  SYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSFSNII------STLNPT 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,307,016
Number of extensions: 56410
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 5
Length of query: 407
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,213,086
Effective search space: 388187520
Effective search space used: 388187520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)