Query psy962
Match_columns 155
No_of_seqs 112 out of 1044
Neff 7.1
Searched_HMMs 46136
Date Sat Aug 17 00:24:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02386 superoxide dismutase 100.0 4.3E-52 9.4E-57 312.5 19.8 149 4-153 2-151 (152)
2 PLN02642 copper, zinc superoxi 100.0 3.6E-51 7.8E-56 309.9 19.5 149 4-153 8-157 (164)
3 KOG0441|consensus 100.0 9E-45 1.9E-49 269.5 15.0 150 4-153 2-153 (154)
4 PF00080 Sod_Cu: Copper/zinc s 100.0 1.1E-44 2.4E-49 269.0 14.8 139 6-150 1-142 (142)
5 cd00305 Cu-Zn_Superoxide_Dismu 100.0 1.4E-43 3.1E-48 264.3 19.0 141 4-152 1-143 (144)
6 PRK15388 Cu/Zn superoxide dism 100.0 1.5E-43 3.3E-48 270.8 18.2 130 14-151 38-176 (177)
7 PRK10290 superoxide dismutase; 100.0 2.3E-42 5.1E-47 263.9 17.9 129 14-151 36-173 (173)
8 COG2032 SodC Cu/Zn superoxide 100.0 1.8E-40 3.9E-45 252.3 15.2 132 14-151 41-179 (179)
9 PLN02957 copper, zinc superoxi 100.0 8.1E-38 1.7E-42 250.4 16.8 127 4-153 81-207 (238)
10 KOG4656|consensus 100.0 1.3E-36 2.9E-41 235.0 10.2 133 6-154 84-217 (247)
11 PF07452 CHRD: CHRD domain; I 85.7 6.7 0.00014 27.4 7.5 37 14-50 19-55 (119)
12 smart00754 CHRD A domain in th 80.7 10 0.00022 26.7 6.8 37 14-51 19-55 (118)
13 PF07731 Cu-oxidase_2: Multico 42.5 27 0.00059 24.6 2.7 23 30-52 42-64 (138)
14 TIGR02807 cas6_var CRISPR-asso 39.9 18 0.0004 28.3 1.5 36 111-150 152-188 (190)
15 PF09559 Cas6: Cas6 Crispr; I 39.1 24 0.00053 27.7 2.1 41 110-154 151-192 (195)
16 PF07495 Y_Y_Y: Y_Y_Y domain; 35.2 34 0.00073 20.9 2.0 20 33-52 30-49 (66)
17 PF08896 DUF1842: Domain of un 25.5 88 0.0019 22.4 3.0 24 14-38 32-55 (114)
18 PF09912 DUF2141: Uncharacteri 24.5 84 0.0018 22.0 2.7 21 30-50 41-61 (112)
19 PF08308 PEGA: PEGA domain; I 23.1 2E+02 0.0042 17.8 4.2 37 16-52 1-45 (71)
20 COG5637 Predicted integral mem 21.8 1.2E+02 0.0025 24.0 3.2 28 14-42 151-178 (217)
No 1
>PLN02386 superoxide dismutase [Cu-Zn]
Probab=100.00 E-value=4.3e-52 Score=312.54 Aligned_cols=149 Identities=64% Similarity=1.115 Sum_probs=142.8
Q ss_pred eeEEEEEcCC-CeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEeecCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q psy962 4 IKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRHV 82 (155)
Q Consensus 4 ~~Ava~l~~~-~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe~g~~~~gc~saGghfnp~~~~~~~p~~~~~~~ 82 (155)
.+|+|.|+++ .++|+|+|+|.+++ .+.|+++|+||+||.|+|||||+|+|+++|+|||+||||.++.|+.|.+..+|+
T Consensus 2 ~~a~a~~~~~~~v~G~v~f~q~~~g-~v~i~~~~~GL~pG~hg~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H~ 80 (152)
T PLN02386 2 VKAVAVLNSSEGVKGTIFFTQEGDG-PTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHA 80 (152)
T ss_pred ceEEEEEcCCCCCEEEEEEEEcCCC-CEEEEEEEeCCCCCceeEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCcc
Confidence 6899999987 69999999998764 699999999999999999999999999999999999999999999999889999
Q ss_pred CCcCCeEEcCCCeEEEEEEeccEEecCCCCccccEEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEEee
Q psy962 83 GDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIA 153 (155)
Q Consensus 83 GDLg~i~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~G~RiACgvI~~~ 153 (155)
||||||.++++|.+++.+++++++|.++++|+|||||||+.+|||++++++.|+++|++|+|||||||++.
T Consensus 81 GDLgNi~~~~~G~a~~~~~~~~~~L~g~~~i~GrslVIHa~~DD~~~~~~~~s~~~G~aG~RiACgvI~~~ 151 (152)
T PLN02386 81 GDLGNVTVGDDGTATFTIVDKQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151 (152)
T ss_pred ccccCEEECCCCeEEEEEECCceEeCCCCccCCcEEEEEccCCCcCCCcccccccCCCCCceEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975
No 2
>PLN02642 copper, zinc superoxide dismutase
Probab=100.00 E-value=3.6e-51 Score=309.88 Aligned_cols=149 Identities=56% Similarity=1.041 Sum_probs=142.5
Q ss_pred eeEEEEEcCC-CeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEeecCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q psy962 4 IKAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRHV 82 (155)
Q Consensus 4 ~~Ava~l~~~-~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe~g~~~~gc~saGghfnp~~~~~~~p~~~~~~~ 82 (155)
.+|+|.|++. .++|+|+|+|..++ .+.|+++|+||+||.|+|||||+|||+++|+|+|+||||.++.|+.|.+..+|+
T Consensus 8 ~~A~a~~~g~~~v~G~v~f~q~~~g-~v~I~~~v~GL~pG~HG~HIHe~Gd~~~g~~SaGgHfNP~~~~HG~~~~~~rH~ 86 (164)
T PLN02642 8 LRAVALIAGDNNVRGCLQFVQDIFG-TTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPPNEEERHA 86 (164)
T ss_pred eeEEEEEcCCCCcEEEEEEEECCCC-cEEEEEEEcCCCCCceeEEEcCCCcCCCCcccccCcccCCCCcCCCCCcCCCcc
Confidence 5799999986 79999999998764 699999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCeEEcCCCeEEEEEEeccEEecCCCCccccEEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEEee
Q psy962 83 GDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIA 153 (155)
Q Consensus 83 GDLg~i~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~G~RiACgvI~~~ 153 (155)
||||||+++++|.+++.++++.++|.++++|+|||||||+.+|||++++++.|+++||+|+|||||||+..
T Consensus 87 GDLgNi~a~~~G~a~~~~~~~~i~L~g~~~iiGRalVVHa~~DD~~~~~~~~s~~tGnaG~RiACGVI~~~ 157 (164)
T PLN02642 87 GDLGNILAGSDGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157 (164)
T ss_pred cccCCEEECCCCeEEEEEEcCceecCCCCCcCCcEEEEeccCCccCcCcccccccCCCCCceEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999965
No 3
>KOG0441|consensus
Probab=100.00 E-value=9e-45 Score=269.54 Aligned_cols=150 Identities=62% Similarity=1.023 Sum_probs=143.7
Q ss_pred eeEEEEEcCC--CeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEeecCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q psy962 4 IKAVCVLNNE--PVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRH 81 (155)
Q Consensus 4 ~~Ava~l~~~--~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe~g~~~~gc~saGghfnp~~~~~~~p~~~~~~ 81 (155)
.+|+|+|++. .|.|+|.|+|..+++.+.|++.|+||+||.|+|||||+||.++||.|||+||||.+..|+.|.++.+|
T Consensus 2 ~~~~avl~g~~~~V~G~i~F~Q~~~~~~~~v~~~i~GL~pg~hgfHvHqfGD~t~GC~SaGphFNp~~~~hg~p~~~~rH 81 (154)
T KOG0441|consen 2 AQAVAVLEGDEIQVIGVITFEQFLPGEPLRVSGEVTGLPPGKHGFHVHQFGDNTNGCKSAGPHFNPNKKTHGGPVDEVRH 81 (154)
T ss_pred cceEEEEecCCCCceeEEEEEEcCCCCcEEEEEEEecCCCceeeEEEEeccCCCCChhcCCCCCCCcccCCCCccccccc
Confidence 3799999986 79999999996666689999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCeEEcCCCeEEEEEEeccEEecCCCCccccEEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEEee
Q psy962 82 VGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIA 153 (155)
Q Consensus 82 ~GDLg~i~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~G~RiACgvI~~~ 153 (155)
+|||||+.++.+|.+...+.+..++|+|+++|+|||+|||+.+||.+++..+.+..+||+|+|+|||+|+..
T Consensus 82 ~gdlGnv~~~~~G~~~~~~~d~~i~l~g~~sivgrs~vvHa~~ddLg~G~~~~s~ktgnag~r~aCgvi~~~ 153 (154)
T KOG0441|consen 82 VGDLGNVDAKDDGVISRVFGDSVITLSGPNSIVGRSVVVHAGEDDLGKGGHELSKKTGNAGARPACGVIGIA 153 (154)
T ss_pred cccccccccCCCceEEEEEccceEEEeeccccceeEEEEeccCccccCCchhhhhhccccCCCccceeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999864
No 4
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide []. Superoxide is a normal by-product of aerobic respiration and is produced by a number of reactions, including oxidative phosphorylation and photosynthesis. The dismutase enzymes have a very high catalytic efficiency due to the attraction of superoxide to the ions bound at the active site [, ]. There are three forms of superoxide dismutase, depending on the metal cofactor: Cu/Zn (which binds both copper and zinc), Fe and Mn types. The Fe and Mn forms are similar in their primary, secondary and tertiary structures, but are distinct from the Cu/Zn form []. Prokaryotes and protists contain Mn, Fe or both types, while most eukaryotic organisms utilise the Cu/Zn type.; GO: 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 2K4W_A 2APS_B 2WWN_B 2WWO_B 1ESO_A 2AQM_A 3F7L_A 3F7K_A 2E47_A 2E46_A ....
Probab=100.00 E-value=1.1e-44 Score=268.99 Aligned_cols=139 Identities=52% Similarity=0.862 Sum_probs=131.1
Q ss_pred EEEEEcCC--CeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEeecCCC-CCCCCCCCCccCCCCCCCCCCCCCCCCC
Q psy962 6 AVCVLNNE--PVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDN-TNGCTSAGPHFNPLGKDHGAPSDADRHV 82 (155)
Q Consensus 6 Ava~l~~~--~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe~g~~-~~gc~saGghfnp~~~~~~~p~~~~~~~ 82 (155)
|+|+|+++ +|+|+|+|+|..+...+.|+++|+||++|.|+|||||+|++ +.+|.++|+||||.++.|..|+...|++
T Consensus 1 a~a~l~~~~~~v~G~v~f~q~~~~~~~~v~~~~~GL~~g~~~~hIH~~g~~~~~~c~s~G~h~np~~~~~~~~~~~~~~~ 80 (142)
T PF00080_consen 1 AVAVLKGAGGKVKGTVTFTQVSDGDGVQVTVSLNGLPPGQHGYHIHENGDCSSNNCSSAGGHYNPTNVPHGGPSADNCHA 80 (142)
T ss_dssp EEEEEBETSSSEEEEEEEEEETTTTEEEEEEEEESSSSEEEEEEEESSSTCSTTTTGGG-SBCETTTSSSSSTTSSSSCT
T ss_pred CEEEEeCCCCCeEEEEEEEEeCCCCCEEEEEEEECCCCCCceEEEEeccccccccccccceecCccccccCCcccccccc
Confidence 89999954 99999999999976569999999999999999999999999 7789999999999999999998788999
Q ss_pred CCcCCeEEcCCCeEEEEEEeccEEecCCCCccccEEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEE
Q psy962 83 GDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVI 150 (155)
Q Consensus 83 GDLg~i~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~G~RiACgvI 150 (155)
|||++++++.+|.+++.|++++|+|+|.++|+|||||||+.+||+ .++++|++|+|||||+|
T Consensus 81 GDL~~~~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~~d~------~~~~~g~~g~RlACg~I 142 (142)
T PF00080_consen 81 GDLGNKYVDADGSASFTFTDSNLSLSGPNSIIGRSIVIHSGPDDF------TSQPTGNAGARLACGVI 142 (142)
T ss_dssp TEEEEEEESTTSEEEEEEEESSSBSSSTTBHTTSEEEEESSSSTT------THHHHTTTTSEEEEEEE
T ss_pred ccccccccccCCceEEEEEeeeEeccCCccccCCEEEEEeCCCCc------ccccCCCCCCcEEEEeC
Confidence 999999999999999999999999999999999999999999998 78899999999999998
No 5
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=100.00 E-value=1.4e-43 Score=264.30 Aligned_cols=141 Identities=55% Similarity=0.874 Sum_probs=133.0
Q ss_pred eeEEEEEcCC--CeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEeecCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q psy962 4 IKAVCVLNNE--PVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRH 81 (155)
Q Consensus 4 ~~Ava~l~~~--~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe~g~~~~gc~saGghfnp~~~~~~~p~~~~~~ 81 (155)
.+|+|.|+++ .++|+|+|+|.++ .++|+++|+||+||.|+|||||+|+|+.+|+|+|+||||+++.|+.|.+..+|
T Consensus 1 ~~a~~~l~~~~g~v~G~v~f~q~~~--~v~v~~~l~GL~pG~hg~HIHe~Gd~~~~~~saGgh~np~~~~hg~~~~~~~h 78 (144)
T cd00305 1 VSAVAVLKGPDGKVVGTVTFTQQSG--GVTITGELSGLTPGLHGFHIHEFGDCTNGCTSAGGHFNPFGKKHGGPNDEGRH 78 (144)
T ss_pred CcEEEEEECCCCceEEEEEEEECCC--CEEEEEEEECCCCCceeEEEEecCCCCCccccccCccCCCCCCCCCCCCCCCC
Confidence 3699999986 5999999999986 59999999999999999999999999999999999999999999999989999
Q ss_pred CCCcCCeEEcCCCeEEEEEEeccEEecCCCCccccEEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEEe
Q psy962 82 VGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGI 152 (155)
Q Consensus 82 ~GDLg~i~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~G~RiACgvI~~ 152 (155)
+||||||.++++|+++++|++++++|++..+++|||||||+.+||| .++|.|++|.|++||+|..
T Consensus 79 ~GDLgni~~~~~G~~~~~~~~~~~~l~~~~~iiGrsivVH~~~Dd~------~~~p~~~sg~~~~~G~~~a 143 (144)
T cd00305 79 AGDLGNIVADKDGVATVSVLDPLISLKGGNSIIGRSLVVHAGQDDL------GKGPDELSGGTGNAGVRVA 143 (144)
T ss_pred CCcCCCEEECCCCeEEEEEEeCcEEcCCCCCcCCcEEEEecCCCCC------CCCCCcccccceeeEeEEe
Confidence 9999999999999999999999999998899999999999999998 5788899999999999854
No 6
>PRK15388 Cu/Zn superoxide dismutase; Provisional
Probab=100.00 E-value=1.5e-43 Score=270.78 Aligned_cols=130 Identities=29% Similarity=0.502 Sum_probs=117.6
Q ss_pred CeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEeecCCCCC----C----CCCCCCccCCCCC-CCCCCCCCCCCCCC
Q psy962 14 PVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTN----G----CTSAGPHFNPLGK-DHGAPSDADRHVGD 84 (155)
Q Consensus 14 ~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe~g~~~~----g----c~saGghfnp~~~-~~~~p~~~~~~~GD 84 (155)
++.|+|+|+|...+ +.|+++++||+||.|+|||||+|+|+. + |.|||+||||+++ .|+.|++..+|+||
T Consensus 38 ~~~G~v~f~~~~~g--v~I~~~l~GL~pG~HGfHIHe~GdC~~~~~~G~~~~~~SAGgHfNP~~~~~Hg~p~~~~~H~GD 115 (177)
T PRK15388 38 ENIGEITVSETPYG--LLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGHLGD 115 (177)
T ss_pred ceEEEEEEEEcCCc--EEEEEEEcCCCCcceEEEEccCCCccCcccCCCcccccccCCCcCCCCCCCCCCCCCCCCCcCc
Confidence 89999999999764 999999999999999999999999963 2 8999999999997 68889888899999
Q ss_pred cCCeEEcCCCeEEEEEEeccEEecCCCCccccEEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEE
Q psy962 85 LGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIG 151 (155)
Q Consensus 85 Lg~i~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~G~RiACgvI~ 151 (155)
||||+++++|.+++.++++.+. +.++|+|||||||+.+|||+. .|+++||+|.|||||||+
T Consensus 116 LpNi~a~~dG~a~~~~~~~~~~--~~~~i~GralVIHa~~DD~~~----~p~~~GnaG~RiACGVI~ 176 (177)
T PRK15388 116 LPGLVVNADGTATYPLLAPRLK--SLSELKGHSLMIHKGGDNYSD----KPAPLGGGGARFACGVIE 176 (177)
T ss_pred CcCEEECCCccEEEEEEeCCcc--cCcccCCcEEEEECCCCCCCC----CCCcCCCCCceEEEEeec
Confidence 9999999999999999988764 245999999999999999963 477889999999999996
No 7
>PRK10290 superoxide dismutase; Provisional
Probab=100.00 E-value=2.3e-42 Score=263.88 Aligned_cols=129 Identities=29% Similarity=0.571 Sum_probs=116.0
Q ss_pred CeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEeecCCCC----CC----CCCCCCccCCCCC-CCCCCCCCCCCCCC
Q psy962 14 PVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNT----NG----CTSAGPHFNPLGK-DHGAPSDADRHVGD 84 (155)
Q Consensus 14 ~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe~g~~~----~g----c~saGghfnp~~~-~~~~p~~~~~~~GD 84 (155)
.+.|+|+|+|.+.+ ++|+++++||+||.|+|||||+|+|+ ++ |.|+|+||||.++ .|+.|.. .+|+||
T Consensus 36 ~~~G~v~f~~~~~g--v~i~~~l~GL~pG~HGfHIHe~Gdc~~~~~~G~~~~~~sAGgHfNP~~~~~hg~p~~-~~H~GD 112 (173)
T PRK10290 36 QSIGSVTITETDKG--LEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAEAAGGHLDPQNTGKHEGPEG-AGHLGD 112 (173)
T ss_pred ceEEEEEEEEcCCc--EEEEEEEcCCCCCceEEEEeCCCccCCcccCCCcccccccCCccCCCCCcCCCCCCC-CCCcCc
Confidence 88899999999764 99999999999999999999999997 33 8999999999998 6888864 689999
Q ss_pred cCCeEEcCCCeEEEEEEeccEEecCCCCccccEEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEE
Q psy962 85 LGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIG 151 (155)
Q Consensus 85 Lg~i~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~G~RiACgvI~ 151 (155)
||||+++++|.+++.++++.+. +.++|+|||||||+.+|||+. .|+++||+|.|||||||+
T Consensus 113 L~ni~a~~dG~a~~~~~~~~~~--~~~~i~GralVIH~~~DD~~~----~~~~~GnaG~RiACGVI~ 173 (173)
T PRK10290 113 LPALVVNNDGKATDPVIAPRLK--SLDEVKDKALMVHVGGDNMSD----QPKPLGGGGERYACGVIK 173 (173)
T ss_pred ccCEEECCCeeEEEEEEeCCcc--CccccCCcEEEEECCCCCCCC----CCCcCCCCcceEEEEeEC
Confidence 9999999999999999988764 357999999999999999963 377899999999999995
No 8
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-40 Score=252.34 Aligned_cols=132 Identities=40% Similarity=0.641 Sum_probs=122.2
Q ss_pred CeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEeecCCCCC------CCCCCCCccCCC-CCCCCCCCCCCCCCCCcC
Q psy962 14 PVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTN------GCTSAGPHFNPL-GKDHGAPSDADRHVGDLG 86 (155)
Q Consensus 14 ~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe~g~~~~------gc~saGghfnp~-~~~~~~p~~~~~~~GDLg 86 (155)
+..|+|+|++...+ +.++..+.+|+||.|+|||||+|+|.+ .|.||||||||. ..+|+.|+.+..|+|||+
T Consensus 41 ~~vG~vt~~e~~~g--~~~~~~~~~L~pg~hGfHIHe~G~C~pkdgk~~~~~sAGGHfdP~~~~~Hg~p~~~~~H~GDLP 118 (179)
T COG2032 41 KDVGTVTITETGYG--LLFTPALGGLPPGEHGFHIHEKGSCTPKDGKPVDFLSAGGHFDPQNTKKHGGPNADGGHAGDLP 118 (179)
T ss_pred ceeEEEEEeecCCc--eEEeecccCCCCcceeEEecccCCCcCCCCCCcccccccCCcCCccCCCCCCCCCCCCCcCcCc
Confidence 67899999999985 999999999999999999999999976 599999999999 678999999899999999
Q ss_pred CeEEcCCCeEEEEEEeccEEecCCCCccccEEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEE
Q psy962 87 NIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIG 151 (155)
Q Consensus 87 ~i~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~G~RiACgvI~ 151 (155)
+|+++++|.++..++++.+++.+..++.|||||||+.+|||. +.+.|+|++|+|+|||||+
T Consensus 119 ~L~v~~dG~a~~~v~~~~~~l~~l~~v~G~alvIHag~Dd~~----~~P~p~G~aG~R~ACGVI~ 179 (179)
T COG2032 119 NLFVNADGKATLPVLAPRLKLKGLLEVKGRALVIHAGGDDYS----TQPEPLGGAGARVACGVIK 179 (179)
T ss_pred ceEECCCCcEEEEEecccceeccccccCCeEEEEEcCCcccc----CCCccCCCCccceeeeeeC
Confidence 999999999999999999999999999999999999999994 1223499999999999995
No 9
>PLN02957 copper, zinc superoxide dismutase
Probab=100.00 E-value=8.1e-38 Score=250.36 Aligned_cols=127 Identities=31% Similarity=0.522 Sum_probs=116.5
Q ss_pred eeEEEEEcCCCeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEeecCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC
Q psy962 4 IKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRHVG 83 (155)
Q Consensus 4 ~~Ava~l~~~~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe~g~~~~gc~saGghfnp~~~~~~~p~~~~~~~G 83 (155)
..|+|.+++..|.|+|+|+|.+++ .+.|+++|+||+||.|+|||||+|||+++|.|+|+||||.+++|+ .+|+|
T Consensus 81 ~~av~~~~g~~v~G~v~~~~~~~~-~v~i~~~~~GL~pg~hg~hiHe~Gd~~~~~~saG~hfnp~~~~h~-----~~h~G 154 (238)
T PLN02957 81 SAAVAEFKGPDIFGVVRFAQVSME-LARIEAAFSGLSPGTHGWSINEYGDLTRGAASTGKVYNPSDDDTD-----EEPLG 154 (238)
T ss_pred ceEEEEecCCceEEEEEEEEcCCC-CEEEEEEEcCCCCCcEEEEEcCCCCCCCCccccCCCCCCccCCCC-----CCCCC
Confidence 458999999889999999998763 599999999999999999999999999999999999999999886 57999
Q ss_pred CcCCeEEcCCCeEEEEEEeccEEecCCCCccccEEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEEee
Q psy962 84 DLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIA 153 (155)
Q Consensus 84 DLg~i~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~G~RiACgvI~~~ 153 (155)
|||||.++++|.+++.+++..++|+ +|+|||||||+.+|+- +.++|||||+|+
T Consensus 155 DLgni~~~~~G~a~~~~~~~~~~l~---~iiGrs~vih~~~D~~--------------~~~~~~gvi~rs 207 (238)
T PLN02957 155 DLGTLEADENGEATFSGTKEKLKVW---DLIGRSLAVYATADKS--------------GPGIAAAVIARS 207 (238)
T ss_pred ccCCEEeCCCceEEEEEECCCcCcc---ccCCcEEEEEeCCCCC--------------CCCeEEEEEecc
Confidence 9999999999999999999988886 9999999999998852 345999999997
No 10
>KOG4656|consensus
Probab=100.00 E-value=1.3e-36 Score=235.00 Aligned_cols=133 Identities=40% Similarity=0.751 Sum_probs=121.2
Q ss_pred EEEEEcCC-CeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEeecCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCC
Q psy962 6 AVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPHFNPLGKDHGAPSDADRHVGD 84 (155)
Q Consensus 6 Ava~l~~~-~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe~g~~~~gc~saGghfnp~~~~~~~p~~~~~~~GD 84 (155)
|++.+.++ .|.|.|+|.|... +.++|+.+++||+||.|+|||||+||++++|+|+|.||||+..+|++|.. ||
T Consensus 84 t~a~~~~~~~v~GvvRf~qvt~-ek~lid~tvdGlspG~h~~~Ihe~GDlsng~~StG~~ynpf~~p~g~~~~-----gD 157 (247)
T KOG4656|consen 84 TVAKYTGPQAVQGVVRFVQVTE-EKTLIDGTVDGLSPGLHGLHIHEYGDLSNGCESTGKHYNPFQEPHGCPNE-----GD 157 (247)
T ss_pred HHHHhcCCccceeEEEEEEecc-ccEEEEEEecCCCCcccceeEeeccccccchhhcccccCCCcCCCCCCCc-----cc
Confidence 44555666 9999999999998 47999999999999999999999999999999999999999999998864 99
Q ss_pred cCCeEEcCCCeEEEEEEeccEEecCCCCccccEEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEEeec
Q psy962 85 LGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIAK 154 (155)
Q Consensus 85 Lg~i~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~G~RiACgvI~~~~ 154 (155)
|||+.+|++|++.+++.|..|+.| ++||||+||.+..||.|. . .|++|+|+|||+|+|+.
T Consensus 158 LGn~~ad~nGraf~s~~de~Lkvw---dlIGRsvVi~k~~ddlgg--~-----p~nsge~la~gvIARSA 217 (247)
T KOG4656|consen 158 LGNNRADKNGRAFFSAPDEKLKVW---DLIGRSVVISKSLDDLGG--E-----PGNSGERLACGVIARSA 217 (247)
T ss_pred ccccccccCCcEEEecccccccHh---hhhceeEEEeccccccCC--C-----CCCcCcceeEEEeeecc
Confidence 999999999999999999999999 999999999999999742 1 27899999999999973
No 11
>PF07452 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins. This family includes bacterial homologues. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made [].
Probab=85.69 E-value=6.7 Score=27.42 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=31.7
Q ss_pred CeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEee
Q psy962 14 PVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHE 50 (155)
Q Consensus 14 ~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe 50 (155)
.-.|.+.|+-..++..+.+++.++||....-.+|||.
T Consensus 19 ~a~G~a~~~l~~~~~~l~y~i~~~gl~~~~~~~hih~ 55 (119)
T PF07452_consen 19 SASGTAWFTLDDDGNTLHYSITLSGLSSPPTAAHIHQ 55 (119)
T ss_pred CCEEEEEEEEECCCCEEEEEEEEeCCCCCcEEEEEEc
Confidence 5679999999887657899999999966568999999
No 12
>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins.
Probab=80.74 E-value=10 Score=26.68 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=30.1
Q ss_pred CeEEEEEEEEcCCCCCEEEEEEEeCCCCCceeeEEeec
Q psy962 14 PVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEF 51 (155)
Q Consensus 14 ~v~G~v~f~q~~~~~~v~v~~~v~GL~~g~h~~HIHe~ 51 (155)
...|.+.|+-..+ ..+.++++++||..-.-..|||+-
T Consensus 19 ~a~G~a~~~l~~~-~~l~y~i~~~gl~~~~~~~hih~~ 55 (118)
T smart00754 19 GAVGGAWFTLDDD-GSLHYQVTLSGLSGPETAAHIHEG 55 (118)
T ss_pred CcEEEEEEEECCC-CEEEEEEEEcccCCCceeeeEecc
Confidence 6689999998855 479999999999863338999983
No 13
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=42.47 E-value=27 Score=24.61 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=18.3
Q ss_pred EEEEEEEeCCCCCceeeEEeecC
Q psy962 30 VKVTGEIQGLEEGNHGFHIHEFG 52 (155)
Q Consensus 30 v~v~~~v~GL~~g~h~~HIHe~g 52 (155)
-.+++.+.+.....|.||+|-+.
T Consensus 42 ~~v~~~l~N~~~~~Hp~HlHG~~ 64 (138)
T PF07731_consen 42 DVVEIVLQNNGSMPHPFHLHGHS 64 (138)
T ss_dssp SEEEEEEEECTTSSEEEEETTSE
T ss_pred CEEEEEEECCCCCccceEEEeeE
Confidence 46777788877778999999855
No 14
>TIGR02807 cas6_var CRISPR-associated protein, Cas6-related. Members of this protein family resemble the Cas6 proteins described by TIGR01877 in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis ATCC 29413, Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus DK 1622. Oddly, an orphan member is found in Thiobacillus denitrificans ATCC 25259, whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=39.88 E-value=18 Score=28.27 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=22.9
Q ss_pred CCccccEEEEecCCCCCCCCCCCCcccCCCC-CCeEEEEEE
Q psy962 111 NNIVGRTLVVHADPDDLGKGGHELSKTTGNA-GARIACGVI 150 (155)
Q Consensus 111 ~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~-G~RiACgvI 150 (155)
.-|+|||++||.-.+.-+ -.-|..|-. ..++.||+.
T Consensus 152 ~~v~g~sL~v~~Ls~edS----l~LQ~~GLGg~r~mGCGlF 188 (190)
T TIGR02807 152 FTVVGFALELHGLSAEDS----LRLQEQGLGGRRKMGCGLF 188 (190)
T ss_pred ceEEEEEEEEcCCChHHh----HhHHHhcCCCCCceeeeec
Confidence 468999999998654210 012455544 456899975
No 15
>PF09559 Cas6: Cas6 Crispr; InterPro: IPR014174 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this entry resemble the Cas6 proteins described by IPR010156 from INTERPRO in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis (strain ATCC 29413/PCC 7937), Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus (strain DK 1622). Oddly, an orphan member is found in Thiobacillus denitrificans (strain ATCC 25259), whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=39.12 E-value=24 Score=27.68 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=26.0
Q ss_pred CCCccccEEEEecCCCCCCCCCCCCcccCCCC-CCeEEEEEEEeec
Q psy962 110 ANNIVGRTLVVHADPDDLGKGGHELSKTTGNA-GARIACGVIGIAK 154 (155)
Q Consensus 110 ~~siiGRSiVIH~~~Dd~g~~~~~~s~~~G~~-G~RiACgvI~~~~ 154 (155)
...|+|||++||.-..+-+ -.-|..|-. ..++.||++-.-|
T Consensus 151 ~~~v~g~sL~v~~L~~e~S----l~LQ~~GLG~~r~mGCGlFiPhK 192 (195)
T PF09559_consen 151 DGTVVGRSLMVAGLSPEDS----LRLQEQGLGGKRHMGCGLFIPHK 192 (195)
T ss_pred CcceEEEEEEecCCChhhc----eeehhhccCCCcccceeEeccCc
Confidence 3468999999999654311 012455544 4568999875543
No 16
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=35.23 E-value=34 Score=20.89 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=15.1
Q ss_pred EEEEeCCCCCceeeEEeecC
Q psy962 33 TGEIQGLEEGNHGFHIHEFG 52 (155)
Q Consensus 33 ~~~v~GL~~g~h~~HIHe~g 52 (155)
.++++.|+||.|.++|...-
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~ 49 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKD 49 (66)
T ss_dssp EEEEES--SEEEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEEC
Confidence 78889999999999998743
No 17
>PF08896 DUF1842: Domain of unknown function (DUF1842); InterPro: IPR014992 This domain is found at the N terminus of proteins that are functionally uncharacterised.
Probab=25.47 E-value=88 Score=22.41 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.5
Q ss_pred CeEEEEEEEEcCCCCCEEEEEEEeC
Q psy962 14 PVKGTIFFTQEHADSPVKVTGEIQG 38 (155)
Q Consensus 14 ~v~G~v~f~q~~~~~~v~v~~~v~G 38 (155)
.|+|.++++|... .++.|...++|
T Consensus 32 ~VsG~a~ItQat~-ppl~~~s~v~G 55 (114)
T PF08896_consen 32 SVSGRARITQATN-PPLNFHSDVWG 55 (114)
T ss_pred EEEeEEEEEEecC-CCcceEEEeEE
Confidence 8999999999876 47888888887
No 18
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=24.55 E-value=84 Score=22.05 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=18.2
Q ss_pred EEEEEEEeCCCCCceeeEEee
Q psy962 30 VKVTGEIQGLEEGNHGFHIHE 50 (155)
Q Consensus 30 v~v~~~v~GL~~g~h~~HIHe 50 (155)
-.+++++..|+||.|++-|..
T Consensus 41 ~~~~~~f~~lp~G~YAi~v~h 61 (112)
T PF09912_consen 41 GTVTITFEDLPPGTYAIAVFH 61 (112)
T ss_pred CcEEEEECCCCCccEEEEEEE
Confidence 467889999999999998876
No 19
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=23.10 E-value=2e+02 Score=17.80 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=21.5
Q ss_pred EEEEEEEEcCCCCCEEEEEEEeC--------CCCCceeeEEeecC
Q psy962 16 KGTIFFTQEHADSPVKVTGEIQG--------LEEGNHGFHIHEFG 52 (155)
Q Consensus 16 ~G~v~f~q~~~~~~v~v~~~v~G--------L~~g~h~~HIHe~g 52 (155)
+|.+++...+.+..+.|+....| |++|.|.+-|-.-|
T Consensus 1 tg~l~V~s~p~gA~V~vdg~~~G~tp~~~~~l~~G~~~v~v~~~G 45 (71)
T PF08308_consen 1 TGTLRVTSNPSGAEVYVDGKYIGTTPLTLKDLPPGEHTVTVEKPG 45 (71)
T ss_pred CEEEEEEEECCCCEEEECCEEeccCcceeeecCCccEEEEEEECC
Confidence 36777777776645555444433 45566666665533
No 20
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=21.78 E-value=1.2e+02 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=23.6
Q ss_pred CeEEEEEEEEcCCCCCEEEEEEEeCCCCC
Q psy962 14 PVKGTIFFTQEHADSPVKVTGEIQGLEEG 42 (155)
Q Consensus 14 ~v~G~v~f~q~~~~~~v~v~~~v~GL~~g 42 (155)
.-+|.|+|+..++. .+.|.++++--+||
T Consensus 151 ~NsG~VrF~~~pg~-~t~V~v~lsY~~Pg 178 (217)
T COG5637 151 ENSGAVRFYDAPGD-STEVKVTLSYRPPG 178 (217)
T ss_pred CCCccEEeeeCCCC-ceEEEEEEEecCCc
Confidence 56799999999974 78999999977775
Done!