RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy962
(155 letters)
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A
{Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A
Length = 156
Score = 225 bits (576), Expect = 2e-77
Identities = 90/154 (58%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Query: 2 PAIKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTS 60
+KAVCV+ VKG + FTQE + PV V E GL+ G HGFH+HEFGD TNGCTS
Sbjct: 2 SNMKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTS 61
Query: 61 AGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVV 120
AG HFNP ++HGAP D+ RHVGDLGN+VA A+ A D +ISL G+++I+GR++V+
Sbjct: 62 AGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRSMVI 121
Query: 121 HADPDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
H + DDLG+GGHELSK TGNAG R+ACGV+G+A
Sbjct: 122 HENEDDLGRGGHELSKVTGNAGGRLACGVVGLAA 155
>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation,
amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A
{Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A
1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A*
3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A
1uxl_A ...
Length = 153
Score = 223 bits (571), Expect = 1e-76
Identities = 100/153 (65%), Positives = 120/153 (78%), Gaps = 1/153 (0%)
Query: 3 AIKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSA 61
A KAVCVL + PV+G I F Q+ ++ PVKV G I+G+ EG HGFH+HEFGDNT GCTSA
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGVTEGLHGFHVHEFGDNTAGCTSA 60
Query: 62 GPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVH 121
GPHFNPL + HG P D +RHVGDLGN+ A + VA V IEDS+ISL+G + I+GRTLVVH
Sbjct: 61 GPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVH 120
Query: 122 ADPDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
DDLGKGG+E S TGNAG+R+ACGVIGIA+
Sbjct: 121 EKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 153
>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide
acceptor), greek KEY beta-barrel, amyloid filaments,
ALS, FALS; 0.99A {Alvinella pompejana} PDB: 3f7k_A
Length = 152
Score = 223 bits (570), Expect = 2e-76
Identities = 97/153 (63%), Positives = 115/153 (75%), Gaps = 3/153 (1%)
Query: 3 AIKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSA 61
AI AVCVL + PV GTI +E V VTGEI GL G HGFH+HEFGDNTNGCTSA
Sbjct: 1 AIHAVCVLKGDSPVTGTIHLKEE--GDMVTVTGEITGLTPGKHGFHVHEFGDNTNGCTSA 58
Query: 62 GPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVH 121
G HFNP GK+HGAP D +RH GDLGN+VA + A + ++D ++ LTG ++++GRTLVVH
Sbjct: 59 GGHFNPHGKEHGAPEDENRHAGDLGNVVAGEDGKAVINMKDKLVKLTGPDSVIGRTLVVH 118
Query: 122 ADPDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
D DDLG+GGHE SK TGNAG R+ACGVIGI K
Sbjct: 119 VDEDDLGRGGHEQSKITGNAGGRLACGVIGITK 151
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase,
antioxidant, oxidoreductase, NEM disulfide bond,
metal-binding; 1.10A {Caenorhabditis elegans} PDB:
3kbf_A
Length = 157
Score = 221 bits (566), Expect = 8e-76
Identities = 86/154 (55%), Positives = 111/154 (72%), Gaps = 3/154 (1%)
Query: 3 AIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAG 62
+ +AV VL E V GTI+ TQ+ + + GEI+GL G HGFH+H++GD+TNGC SAG
Sbjct: 1 SNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAG 60
Query: 63 PHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHA 122
PHFNP GK HG P RHVGDLGN+ A A+ VAK+++ D++++L G N +VGR++VVHA
Sbjct: 61 PHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHA 120
Query: 123 DPDDLGKG---GHELSKTTGNAGARIACGVIGIA 153
DDLG+G E SK TGNAGAR ACGVI +A
Sbjct: 121 GQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 154
>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase,
antioxidant, metal-binding, DIS bond, transit peptide;
1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A
3hog_A 1srd_A
Length = 154
Score = 220 bits (562), Expect = 4e-75
Identities = 89/153 (58%), Positives = 104/153 (67%), Gaps = 2/153 (1%)
Query: 3 AIKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSA 61
KAV VL N V+G + +Q+ D P V I GL G HGFH+HE+GD TNGC S
Sbjct: 2 TKKAVAVLKGNSNVEGVVTLSQD-DDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMST 60
Query: 62 GPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVH 121
G HFNP HGAP D RH GDLGNIVA A+ VA+V + D+ I LTG N++VGR LVVH
Sbjct: 61 GAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVH 120
Query: 122 ADPDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
DDLGKGGHELS TTGNAG R+ACGV+G+
Sbjct: 121 ELEDDLGKGGHELSLTTGNAGGRLACGVVGLTP 153
>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein,
glycoprotein, metal binding protein; HET: NAG MAN; 2.11A
{Bombyx mori} PDB: 2e46_A
Length = 156
Score = 220 bits (562), Expect = 4e-75
Identities = 77/149 (51%), Positives = 100/149 (67%), Gaps = 1/149 (0%)
Query: 4 IKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGP 63
+A+ VL+ E ++G I FTQ D V V G I GL G +GFH+HE GD + GC S G
Sbjct: 8 SRAIAVLSTETIRGNITFTQV-QDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGS 66
Query: 64 HFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHAD 123
HFNP KDHG P+D +RHVGDLGN+V N +++++ D ISL+G + I+GR +V+H
Sbjct: 67 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 126
Query: 124 PDDLGKGGHELSKTTGNAGARIACGVIGI 152
DD GK H S+ TGNAG R+ACGVIGI
Sbjct: 127 ADDYGKSDHPDSRKTGNAGGRVACGVIGI 155
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel,
antioxidant, copper, cytoplasm, metal- binding,
oxidoreductase; 1.80A {Bombyx mori} PDB: 3l9e_A
Length = 154
Score = 219 bits (560), Expect = 8e-75
Identities = 110/155 (70%), Positives = 123/155 (79%), Gaps = 3/155 (1%)
Query: 1 MPAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTS 60
MP KAVCVL + V GT+FF Q+ SPV V+GE+QGL +G HGFH+HEFGDNTNGCTS
Sbjct: 1 MP-AKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTS 58
Query: 61 AGPHFNPLGKDHGAPSDADRHVGDLGNIVATA-NKVAKVEIEDSIISLTGANNIVGRTLV 119
AG HFNP +DHG PS A RHVGDLGNI A V KV I+DS ISL G N+I+GRTLV
Sbjct: 59 AGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLV 118
Query: 120 VHADPDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
VHADPDDLG GG+ELSKTTGNAG RIACGVIG+AK
Sbjct: 119 VHADPDDLGLGGNELSKTTGNAGGRIACGVIGLAK 153
>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase,
metal-binding; 2.37A {Potentilla atrosanguinea}
Length = 152
Score = 219 bits (559), Expect = 9e-75
Identities = 94/150 (62%), Positives = 108/150 (72%), Gaps = 2/150 (1%)
Query: 5 KAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGP 63
K V VL+ +E V GTI FTQE D P VTG I GL+ G HGFH+H GD TNGC S GP
Sbjct: 3 KGVAVLSSSEGVAGTILFTQE-GDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTGP 61
Query: 64 HFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHAD 123
HFNP GK+HG+P D RH GDLGNI + A I D I LTG ++I+GR +VVHAD
Sbjct: 62 HFNPAGKEHGSPEDETRHAGDLGNITVGDDGTACFTIVDKQIPLTGPHSIIGRAVVVHAD 121
Query: 124 PDDLGKGGHELSKTTGNAGARIACGVIGIA 153
PDDLGKGGHELSK+TGNAG RIACG+IG+
Sbjct: 122 PDDLGKGGHELSKSTGNAGGRIACGIIGLQ 151
>1do5_A Human copper chaperone for superoxide dismutase domain II;
beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1
Length = 154
Score = 217 bits (556), Expect = 3e-74
Identities = 68/152 (44%), Positives = 92/152 (60%), Gaps = 5/152 (3%)
Query: 5 KAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGP 63
AV +L V+G + F Q + G I GLE G HG H+H++GD TN C S G
Sbjct: 5 AAVAILGGPGTVQGVVRFLQL-TPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGN 63
Query: 64 HFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHAD 123
HFNP G HG P D+DRH GDLGN+ A A+ A +ED + + +++GR+L++
Sbjct: 64 HFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKV---WDVIGRSLIIDEG 120
Query: 124 PDDLGKGGHELSKTTGNAGARIACGVIGIAKA 155
DDLG+GGH LSK TGN+G R+ACG+I +
Sbjct: 121 EDDLGRGGHPLSKITGNSGERLACGIIARSAG 152
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide
acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1
Length = 150
Score = 215 bits (550), Expect = 2e-73
Identities = 92/151 (60%), Positives = 111/151 (73%), Gaps = 3/151 (1%)
Query: 4 IKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAG 62
+KAVCVL + VKG + F Q+ + V V G+I+GL +G HGFHIH FGDNTNGC SAG
Sbjct: 1 VKAVCVLAGSGDVKGVVHFEQQ-DEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAG 59
Query: 63 PHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHA 122
HFNP K+HGAP D DRHVGDLGN+ A VA+ +I DS+ISL G N+I+GRT VVH
Sbjct: 60 SHFNPENKNHGAPGDTDRHVGDLGNVTA-EGGVAQFKITDSLISLKGPNSIIGRTAVVHE 118
Query: 123 DPDDLGKGGHELSKTTGNAGARIACGVIGIA 153
DDLGKGG++ S TGNAG R+ACGVIG +
Sbjct: 119 KADDLGKGGNDESLKTGNAGGRLACGVIGYS 149
>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant,
copper, metal-binding, oxidoreductase, zinc; 1.20A
{Cryptococcus liquefaciens}
Length = 168
Score = 216 bits (551), Expect = 2e-73
Identities = 91/154 (59%), Positives = 113/154 (73%), Gaps = 2/154 (1%)
Query: 4 IKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLE-EGNHGFHIHEFGDNTNGCTSA 61
IKA+ VL + PV+G I FTQE + PV V+GEI+ ++ GFH+H+FGDN+NGCTSA
Sbjct: 5 IKAIAVLKGDSPVQGVITFTQESSGGPVTVSGEIKNMDANAQRGFHVHQFGDNSNGCTSA 64
Query: 62 GPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVH 121
GPHFNP G +HG + RHVGDLGN+ A+ VAKV+I DS +SL G ++I+GRT+V+H
Sbjct: 65 GPHFNPTGTNHGDRTAEVRHVGDLGNVKTDASGVAKVQISDSQLSLVGPHSIIGRTIVIH 124
Query: 122 ADPDDLGKGGHELSKTTGNAGARIACGVIGIAKA 155
A DDLGK H S TGNAGAR ACGVIGIA A
Sbjct: 125 AGEDDLGKTDHPESLKTGNAGARSACGVIGIAAA 158
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide,
oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP:
b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A
1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A
Length = 154
Score = 214 bits (548), Expect = 4e-73
Identities = 82/152 (53%), Positives = 98/152 (64%), Gaps = 2/152 (1%)
Query: 4 IKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLE-EGNHGFHIHEFGDNTNGCTSA 61
++AV VL + V G + F Q P V+ EI G GFHIHEFGD TNGC SA
Sbjct: 2 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 61
Query: 62 GPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVH 121
GPHFNP K HGAP+D RHVGD+GN+ N VAK +DS+I L G ++VGR++V+H
Sbjct: 62 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 121
Query: 122 ADPDDLGKGGHELSKTTGNAGARIACGVIGIA 153
A DDLGKG E S TGNAG R ACGVIG+
Sbjct: 122 AGQDDLGKGDTEESLKTGNAGPRPACGVIGLT 153
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD,
SOD-like, superoxide dismutase mutants, STRU genomics,
unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B
1s4i_B 1u3n_A
Length = 175
Score = 185 bits (471), Expect = 5e-61
Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 15/158 (9%)
Query: 5 KAVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEGNH-GFHIHEFGDNTN-GCTSA 61
V ++N E G I + D + + L G GFHIHE G SA
Sbjct: 22 HHVQLVNREGKAVGFIEIKES-DDEGLDIHISANSLRPGASLGFHIHEKGSCVRPDFESA 80
Query: 62 GPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGAN-----NIVGR 116
G HFNPL K+HG + H GDL N+ A+ V + SL + + G
Sbjct: 81 GGHFNPLNKEHGFNNPMGHHAGDLPNLEVGADGKVDVIMNAPDTSLKKGSKLNILDEDGS 140
Query: 117 TLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
++H DD + +GN+GARI CG +
Sbjct: 141 AFIIHEQADDYL------TNPSGNSGARIVCGALLGNN 172
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant,
metal binding, greek KEY barrel, oxidoreductase; 1.63A
{Mycobacterium tuberculosis} SCOP: b.1.8.1
Length = 208
Score = 181 bits (462), Expect = 3e-59
Identities = 38/173 (21%), Positives = 59/173 (34%), Gaps = 21/173 (12%)
Query: 2 PAIKAVCVLNNE--PVKGTIFFTQEHADSPVKV-TGEIQGLEEGNHGFHIHEFGDNTNGC 58
A L T F + + V + T + L G HG HIH+ G
Sbjct: 36 GAQSLTSTLTAPDGTKVATAKFEFANGYATVTIATTGVGKLTPGFHGLHIHQVGKCEPNS 95
Query: 59 T-----SAGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNI 113
+ G + G H GDL ++ + A + ++ +
Sbjct: 96 VAPTGGAPGNFLSAGGHYHVPGHTGTPASGDLASLQVRGDGSAMLVTTTDAFTMDDLLSG 155
Query: 114 VGRTLVVHADPDDLGK-------------GGHELSKTTGNAGARIACGVIGIA 153
+++HA D+ G E + TTG+AG R+ACGVIG
Sbjct: 156 AKTAIIIHAGADNFANIPPERYVQVNGTPGPDETTLTTGDAGKRVACGVIGSG 208
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric
superoxide dismutase, copper enzymes, enzyme evolution,
X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB:
2k4w_A
Length = 154
Score = 178 bits (453), Expect = 1e-58
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 16/156 (10%)
Query: 3 AIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGD--------N 54
+ V G++ T+ D ++ + +++ L G HGFHIH G
Sbjct: 6 EMNLVTSQGVGQSIGSVTITET--DKGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGK 63
Query: 55 TNGCTSAGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIV 114
+ SAG H +P + H+GDL +V + A + L + I
Sbjct: 64 ASAAESAGGHLDPQNTGKHEGPEGAGHLGDLPALVVNNDGKATDAVIAP--RLKSLDEIK 121
Query: 115 GRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVI 150
+ L+VH D++ + K G G R ACGVI
Sbjct: 122 DKALMVHVGGDNMS----DQPKPLGGGGERYACGVI 153
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella
abortus}
Length = 154
Score = 177 bits (451), Expect = 3e-58
Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 17/157 (10%)
Query: 2 PAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNG---- 57
+A+ + GT+ ++ + ++ L G HGFH+HE G
Sbjct: 6 KMYEALPTGPGK-EVGTVVISEA--PGGLHFKVNMEKLTPGYHGFHVHENPSCAPGEKDG 62
Query: 58 ----CTSAGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNI 113
+AG H++P H + D H+GDL + A A+ + L I
Sbjct: 63 KIVPALAAGGHYDPGNTHHHLGPEGDGHMGDLPRLSANADGKVSETVVA--PHLKKLAEI 120
Query: 114 VGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVI 150
R+L+VH D+ G GAR ACGVI
Sbjct: 121 KQRSLMVHVGGDNYSDKPEP----LGGGGARFACGVI 153
>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu,
protein-subunit interaction recognition, protein
electrostatic; 1.5A {Photobacterium leiognathi} SCOP:
b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A
1ibb_A 1ibf_A
Length = 151
Score = 176 bits (448), Expect = 8e-58
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 19/156 (12%)
Query: 4 IKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNG------ 57
+K + + GTI +Q V E+ L G HGFHIH+ G +
Sbjct: 5 VKMTDLQTGK-PVGTIELSQN--KYGVVFIPELADLTPGEHGFHIHQNGSCASSEKDGKV 61
Query: 58 --CTSAGPHFNPLG-KDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIV 114
+AG H++P HG P D H GDL + +AN +A + ++L +
Sbjct: 62 VLGGAAGGHYDPEHTNKHGFPWTDDNHKGDLPALFVSANGLATNPVLAPRLTL---KELK 118
Query: 115 GRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVI 150
G +++HA D+ ++ K G GAR+ACGVI
Sbjct: 119 GHAIMIHAGGDN----HSDMPKALGGGGARVACGVI 150
>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria
MENI oxidoreductase; 1.30A {Neisseria meningitidis} PDB:
2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A
Length = 164
Score = 175 bits (445), Expect = 3e-57
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 3 AIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGD--------N 54
++ + +N GT+ T+ + + T ++QGL G HGFHIHE
Sbjct: 15 KVQQLDPVNGNKDVGTVTITES--NYGLVFTPDLQGLSAGLHGFHIHENPSCEPKEKEGK 72
Query: 55 TNGCTSAGPHFNPLG-KDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNI 113
AG H++P G K HG P D H+GDL + + A + L +++
Sbjct: 73 LTAGLGAGGHWDPKGAKQHGYPWQDDAHLGDLPALTVLHDGTATNPVLAP--RLKHLDDV 130
Query: 114 VGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVI 150
G ++++H D+ G G R+ACGVI
Sbjct: 131 RGHSIMIHTGGDNHSDH----PAPLGGGGPRMACGVI 163
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase;
2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB:
2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A*
Length = 156
Score = 172 bits (439), Expect = 2e-56
Identities = 41/158 (25%), Positives = 59/158 (37%), Gaps = 19/158 (12%)
Query: 4 IKAVCVL--NNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNG---- 57
+K L G I ++ + T + GL G HGFH+H G
Sbjct: 5 VKMNDALSSGTGENIGEITVSET--PYGLLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDG 62
Query: 58 ----CTSAGPHFNPLG-KDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANN 112
AG H +P H P + H+GDL +V A+ A + L +
Sbjct: 63 KEVPALMAGGHLDPEKTGKHLGPYNDKGHLGDLPGLVVNADGTATYPLLAP--RLKSLSE 120
Query: 113 IVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVI 150
+ G +L++H D+ G GAR ACGVI
Sbjct: 121 LKGHSLMIHKGGDNYSDKPAP----LGGGGARFACGVI 154
>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase; HET:
HEM; 1.50A {Haemophilus ducreyi}
Length = 177
Score = 171 bits (434), Expect = 2e-55
Identities = 41/157 (26%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 3 AIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGC---- 58
++ + N GT+ T+ + T ++ L G HGFHIHE
Sbjct: 28 PVQQLDPQNGNKDVGTVEITES--AYGLVFTPKLHDLAHGLHGFHIHEKPSCEPKEKDGK 85
Query: 59 ----TSAGPHFNPLG-KDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNI 113
AG H++P + HG P D H+GDL + + A + L +
Sbjct: 86 LVAGLGAGGHWDPKQTQKHGYPWSDDAHMGDLPALFVMHDGSATTPVLAP--RLKKLAEV 143
Query: 114 VGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVI 150
G +L++HA D+ + G G R+ACGVI
Sbjct: 144 KGHSLMIHAGGDN----HSDHPAPLGGGGPRMACGVI 176
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation,
oxidoreductase, heparin binding, heparin-BIND oxidative
stress, antioxidant; 1.70A {Homo sapiens}
Length = 222
Score = 172 bits (437), Expect = 3e-55
Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 3 AIKAVCVL--------NNEPVKGTIFFTQEHADSPVKVTGEIQGL----EEGNHGFHIHE 50
+ A C + V G + F Q + + ++G + H+H+
Sbjct: 40 TLHAACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQ 99
Query: 51 FGDNTNGCTSAGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGA 110
FGD + GC S GPH+NPL H +H GD GN + SL G
Sbjct: 100 FGDLSQGCESTGPHYNPLAVPH------PQHPGDFGNFAV-RDGSLWRYRAGLAASLAGP 152
Query: 111 NNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIA 153
++IVGR +VVHA DDLG+GG++ S GNAG R+AC V+G+
Sbjct: 153 HSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVGVC 195
>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A
{Saccharomyces cerevisiae} SCOP: b.1.8.1
Length = 140
Score = 135 bits (341), Expect = 7e-42
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 33/158 (20%)
Query: 5 KAVCVLN-----------NEPVKGTIFFTQEHADSPVKVTGEIQGLEE-GNHGFHIHEFG 52
AV +L + V+G Q ++ + G+ E GN+ IHE G
Sbjct: 2 SAVAILETFQKYTIDQKKDTAVRGLARIVQV-GENKTLFDITVNGVPEAGNYHASIHEKG 60
Query: 53 DNTNGCTSAGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANN 112
D + G S G ++ + + DLG N + + +
Sbjct: 61 DVSKGVESTGKVWHKFDEPIEC-----FNESDLGK-----NLYSGKTFLSAPLPT---WQ 107
Query: 113 IVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVI 150
++GR+ V+ + + + GVI
Sbjct: 108 LIGRSFVISKSLNHPENEPSSVKDYS-------FLGVI 138
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein
complex, heterodimer, metallochaperone, amyotrophic
lateral sclerosis; 2.90A {Saccharomyces cerevisiae}
SCOP: b.1.8.1 d.58.17.1
Length = 249
Score = 131 bits (329), Expect = 1e-38
Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 20/151 (13%)
Query: 1 MPAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTS 60
+ + V+G Q + + E GN+ IHE GD + G S
Sbjct: 86 TFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGNYHASIHEKGDVSKGVES 145
Query: 61 AGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVV 120
G ++ + + DLG N + + + ++GR+ V+
Sbjct: 146 TGKVWHKFDEPIE-----CFNESDLGK-----NLYSGKTFLSAPLPT---WQLIGRSFVI 192
Query: 121 HADPDDLGKGGHELSKTTGNAGARIACGVIG 151
+ + GVI
Sbjct: 193 SKSLNHPENE-------PSSVKDYSFLGVIA 216
>1qup_A Superoxide dismutase 1 copper chaperone; two domains,
beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A
{Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Length = 222
Score = 129 bits (325), Expect = 2e-38
Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 20/151 (13%)
Query: 3 AIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAG 62
+ + V+G Q + + E GN+ IHE GD + G S G
Sbjct: 87 QKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGNYHASIHEKGDVSKGVESTG 146
Query: 63 PHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHA 122
++ + + DLG + + + ++GR+ V+
Sbjct: 147 KVWHKFDEPIE-----CFNESDLGKNLYSGKTFLSAPLPT--------WQLIGRSFVISK 193
Query: 123 DPDDLGKGGHELSKTTGNAGARIACGVIGIA 153
+ + GVI +
Sbjct: 194 SLNHPENE-------PSSVKDYSFLGVIARS 217
>2yfr_A Levansucrase, inulosucrase; fructosyltransferase, glycoside
hydrolase family GH68, trans sugar utilization; 1.75A
{Lactobacillus johnsonii} PDB: 2yft_A* 2yfs_A*
Length = 571
Score = 27.2 bits (59), Expect = 2.5
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 108 TGANNIVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVIGIAKA 155
G + I + D+LG LS + A+ + IGI K
Sbjct: 307 QGDDQIYQWLNYGGTNKDNLGDFFQILSNSDIKDRAKWSNAAIGIIKL 354
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum,
triggered immunity, bacterial pathogenesis,
transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas
syringae PV}
Length = 117
Score = 26.0 bits (56), Expect = 4.3
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 67 PLGKDHGAPSDADRHVGDLGNIVATANKVAK 97
PLG D + + DR + ++ A
Sbjct: 2 PLGSDRASQTPVDRSPPRVNQRPIRVDRAAM 32
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural
genomics, protein structure initiative; 2.80A {Bacillus
halodurans}
Length = 455
Score = 26.0 bits (58), Expect = 7.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 96 AKVEIEDSIISLTGANNIVGRTLVVHADP 124
+E + +S+ G + G+ +VV D
Sbjct: 209 VNIEKDGLTVSIEGGQMLTGQHVVVPGDI 237
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii}
PDB: 3roi_A* 4egr_A* 3tr1_A
Length = 441
Score = 25.6 bits (57), Expect = 7.5
Identities = 3/29 (10%), Positives = 11/29 (37%)
Query: 96 AKVEIEDSIISLTGANNIVGRTLVVHADP 124
++ + I ++G + + + D
Sbjct: 209 YTLQKDKQSICVSGGGKLKANDISIPGDI 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.135 0.403
Gapped
Lambda K H
0.267 0.0471 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,417,135
Number of extensions: 141172
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 33
Length of query: 155
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 69
Effective length of database: 4,300,587
Effective search space: 296740503
Effective search space used: 296740503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.8 bits)