RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy962
(155 letters)
>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human
(Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 173 bits (439), Expect = 5e-57
Identities = 101/153 (66%), Positives = 120/153 (78%), Gaps = 1/153 (0%)
Query: 3 AIKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSA 61
A KAVCVL + PV+G I F Q+ ++ PVKV G I+GL EG HGFH+HEFGDNT GCTSA
Sbjct: 1 ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
Query: 62 GPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVH 121
GPHFNPL + HG P D +RHVGDLGN+ A + VA V IEDS+ISL+G + I+GRTLVVH
Sbjct: 61 GPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVH 120
Query: 122 ADPDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
DDLGKGG+E S TGNAG+R+ACGVIGIA+
Sbjct: 121 EKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 153
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke
(Schistosoma mansoni) [TaxId: 6183]}
Length = 156
Score = 165 bits (419), Expect = 6e-54
Identities = 90/152 (59%), Positives = 114/152 (75%), Gaps = 1/152 (0%)
Query: 4 IKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAG 62
+KAVCV+ VKG + FTQE + PV V E GL+ G HGFH+HEFGD TNGCTSAG
Sbjct: 4 MKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAG 63
Query: 63 PHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHA 122
HFNP ++HGAP D+ RHVGDLGN+VA A+ A D +ISL G+++I+GR++V+H
Sbjct: 64 AHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRSMVIHE 123
Query: 123 DPDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
+ DDLG+GGHELSK TGNAG R+ACGV+G+A
Sbjct: 124 NEDDLGRGGHELSKVTGNAGGRLACGVVGLAA 155
>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 153
Score = 158 bits (400), Expect = 4e-51
Identities = 82/152 (53%), Positives = 98/152 (64%), Gaps = 2/152 (1%)
Query: 4 IKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLE-EGNHGFHIHEFGDNTNGCTSA 61
++AV VL + V G + F Q P V+ EI G GFHIHEFGD TNGC SA
Sbjct: 1 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA 60
Query: 62 GPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVH 121
GPHFNP K HGAP+D RHVGD+GN+ N VAK +DS+I L G ++VGR++V+H
Sbjct: 61 GPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIH 120
Query: 122 ADPDDLGKGGHELSKTTGNAGARIACGVIGIA 153
A DDLGKG E S TGNAG R ACGVIG+
Sbjct: 121 AGQDDLGKGDTEESLKTGNAGPRPACGVIGLT 152
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach
(Spinacia oleracea) [TaxId: 3562]}
Length = 154
Score = 153 bits (387), Expect = 4e-49
Identities = 92/151 (60%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
Query: 5 KAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGP 63
KAV VL V+G + TQE D P V I GL G HGFH+HEFGD TNGC S GP
Sbjct: 4 KAVAVLKGTSNVEGVVTLTQE-DDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGP 62
Query: 64 HFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHAD 123
HFNP K HGAP D RH GDLGNIVA + VA+ I D+ I LTG N++VGR LVVH
Sbjct: 63 HFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHEL 122
Query: 124 PDDLGKGGHELSKTTGNAGARIACGVIGIAK 154
DDLGKGGHELS TTGNAG R+ACGV+G+
Sbjct: 123 EDDLGKGGHELSPTTGNAGGRLACGVVGLTP 153
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 150
Score = 151 bits (383), Expect = 2e-48
Identities = 92/151 (60%), Positives = 111/151 (73%), Gaps = 3/151 (1%)
Query: 4 IKAVCVLN-NEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAG 62
+KAVCVL + VKG + F Q+ + V V G+I+GL +G HGFHIH FGDNTNGC SAG
Sbjct: 1 VKAVCVLAGSGDVKGVVHFEQQ-DEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAG 59
Query: 63 PHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHA 122
HFNP K+HGAP D DRHVGDLGN+ A VA+ +I DS+ISL G N+I+GRT VVH
Sbjct: 60 SHFNPENKNHGAPGDTDRHVGDLGNVTA-EGGVAQFKITDSLISLKGPNSIIGRTAVVHE 118
Query: 123 DPDDLGKGGHELSKTTGNAGARIACGVIGIA 153
DDLGKGG++ S TGNAG R+ACGVIG +
Sbjct: 119 KADDLGKGGNDESLKTGNAGGRLACGVIGYS 149
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 148 bits (375), Expect = 3e-47
Identities = 68/149 (45%), Positives = 92/149 (61%), Gaps = 5/149 (3%)
Query: 6 AVCVLNNE-PVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSAGPH 64
AV +L V+G + F Q + G I GLE G HG H+H++GD TN C S G H
Sbjct: 6 AVAILGGPGTVQGVVRFLQL-TPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNH 64
Query: 65 FNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADP 124
FNP G HG P D+DRH GDLGN+ A A+ A +ED + + +++GR+L++
Sbjct: 65 FNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVW---DVIGRSLIIDEGE 121
Query: 125 DDLGKGGHELSKTTGNAGARIACGVIGIA 153
DDLG+GGH LSK TGN+G R+ACG+I +
Sbjct: 122 DDLGRGGHPLSKITGNSGERLACGIIARS 150
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella
typhimurium [TaxId: 90371]}
Length = 155
Score = 125 bits (314), Expect = 4e-38
Identities = 39/145 (26%), Positives = 56/145 (38%), Gaps = 17/145 (11%)
Query: 15 VKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNG--------CTSAGPHFN 66
G I ++ + T + GL G HGFH+H G AG H +
Sbjct: 18 NIGEITVSET--PYGLLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLD 75
Query: 67 PLGKD-HGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPD 125
P H P + H+GDL +V A+ A + L + + G +L++H D
Sbjct: 76 PEKTGKHLGPYNDKGHLGDLPGLVVNADGTATYPLLAP--RLKSLSELKGHSLMIHKGGD 133
Query: 126 DLGKGGHELSKTTGNAGARIACGVI 150
+ G GAR ACGVI
Sbjct: 134 NYSDK----PAPLGGGGARFACGVI 154
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD
{Actinobacillus pleuropneumoniae [TaxId: 715]}
Length = 155
Score = 123 bits (310), Expect = 2e-37
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 3 AIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDN-------- 54
++ + + GT+ T+ + T + GL +G HGFHIH+
Sbjct: 6 QVQQLDPVKGNKDVGTVEITES--AYGLVFTPHLHGLAQGLHGFHIHQNPSCEPKEKDGK 63
Query: 55 TNGCTSAGPHFNPLGKD-HGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNI 113
AG H++P HG P + H+GDL + + A + L + +
Sbjct: 64 LVAGLGAGGHWDPKETKQHGYPWSDNAHLGDLPALFVEHDGSATNPVLAP--RLKKLDEV 121
Query: 114 VGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVI 150
G +L++H D+ + G G R+ACGVI
Sbjct: 122 KGHSLMIHEGGDNHS----DHPAPLGGGGPRMACGVI 154
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 171
Score = 123 bits (309), Expect = 5e-37
Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 19/156 (12%)
Query: 15 VKGTIFFTQEHADSPVKV-TGEIQGLEEGNHGFHIHEFGDNTNGCTS-----AGPHFNPL 68
T F + + V + T + L G HG HIH+ G + G +
Sbjct: 14 KVATAKFEFANGYATVTIATTGVGKLTPGFHGLHIHQVGKCEPNSVAPTGGAPGNFLSAG 73
Query: 69 GKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDDLG 128
G H GDL ++ + A + ++ + +++HA D+
Sbjct: 74 GHYHVPGHTGTPASGDLASLQVRGDGSAMLVTTTDAFTMDDLLSGAKTAIIIHAGADNFA 133
Query: 129 K-------------GGHELSKTTGNAGARIACGVIG 151
G E + TTG+AG R+ACGVIG
Sbjct: 134 NIPPERYVQVNGTPGPDETTLTTGDAGKRVACGVIG 169
>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD
{Photobacterium leiognathi [TaxId: 553611]}
Length = 151
Score = 122 bits (306), Expect = 6e-37
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 19/156 (12%)
Query: 4 IKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNG------ 57
+K + +PV GTI +Q V E+ L G HGFHIH+ G +
Sbjct: 5 VKMTDLQTGKPV-GTIELSQN--KYGVVFIPELADLTPGEHGFHIHQNGSCASSEKDGKV 61
Query: 58 --CTSAGPHFNPLGKD-HGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIV 114
+AG H++P + HG P D H GDL + +AN +A + ++L +
Sbjct: 62 VLGGAAGGHYDPEHTNKHGFPWTDDNHKGDLPALFVSANGLATNPVLAPRLTL---KELK 118
Query: 115 GRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVI 150
G +++HA D+ ++ K G GAR+ACGVI
Sbjct: 119 GHAIMIHAGGDNHS----DMPKALGGGGARVACGVI 150
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia
coli [TaxId: 562]}
Length = 154
Score = 119 bits (299), Expect = 1e-35
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 16/144 (11%)
Query: 15 VKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGD--------NTNGCTSAGPHFN 66
G++ T+ D ++ + +++ L G HGFHIH G + SAG H +
Sbjct: 18 SIGSVTITET--DKGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAESAGGHLD 75
Query: 67 PLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADPDD 126
P + H+GDL +V + A + L + I + L+VH D+
Sbjct: 76 PQNTGKHEGPEGAGHLGDLPALVVNNDGKATDAVIAP--RLKSLDEIKDKALMVHVGGDN 133
Query: 127 LGKGGHELSKTTGNAGARIACGVI 150
+ + K G G R ACGVI
Sbjct: 134 MS----DQPKPLGGGGERYACGVI 153
>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 140
Score = 107 bits (268), Expect = 2e-31
Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 33/158 (20%)
Query: 5 KAVCVLN-----------NEPVKGTIFFTQEHADSPVKVTGEIQGLEE-GNHGFHIHEFG 52
AV +L + V+G Q ++ + G+ E GN+ IHE G
Sbjct: 2 SAVAILETFQKYTIDQKKDTAVRGLARIVQV-GENKTLFDITVNGVPEAGNYHASIHEKG 60
Query: 53 DNTNGCTSAGPHFNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANN 112
D + G S G ++ + N + + +
Sbjct: 61 DVSKGVESTGKVWHKFDEPI----------ECFNESDLGKNLYSGKTFLSAPLPT---WQ 107
Query: 113 IVGRTLVVHADPDDLGKGGHELSKTTGNAGARIACGVI 150
++GR+ V+ + + GVI
Sbjct: 108 LIGRSFVISKSLNHPENEPSSVKD-------YSFLGVI 138
>d2c7fa1 b.71.1.2 (A:2-16,A:387-502) Alpha-l-arabinofuranosidase
{Clostridium thermocellum [TaxId: 1515]}
Length = 131
Score = 28.7 bits (64), Expect = 0.19
Identities = 11/62 (17%), Positives = 25/62 (40%)
Query: 2 PAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSA 61
I++V + N E + TIF + + + +++G+++ HI + S
Sbjct: 37 TDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRGMKDYRLLEHIVLEHQDLKIRNSV 96
Query: 62 GP 63
Sbjct: 97 NG 98
>d1qw9a1 b.71.1.2 (A:5-17,A:385-501) Alpha-l-arabinofuranosidase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 130
Score = 28.3 bits (63), Expect = 0.21
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 2 PAIKAVCVLNNEPVKGTIFFTQEHADSPVKVTGEIQGLEEGNHGFHIHEFGDNTNGCTSA 61
P ++++ V N E + TIF + + + +++ E+ HI DN SA
Sbjct: 35 PYLESIAVYNEEKEEVTIFAVNRDMEDALLLECDVRSFEDYRVIEHIVLEHDNVKQTNSA 94
Query: 62 GPH 64
Sbjct: 95 QSS 97
>d1m55a_ d.89.1.3 (A:) Replication protein Rep, nuclease domain
{Adeno-associated virus, aav-5 [TaxId: 272636]}
Length = 193
Score = 25.6 bits (56), Expect = 2.1
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 39 LEEGNHGFHIH 49
E+G+ FH+H
Sbjct: 81 FEKGSEYFHLH 91
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 24.7 bits (54), Expect = 5.0
Identities = 21/98 (21%), Positives = 27/98 (27%), Gaps = 7/98 (7%)
Query: 65 FNPLGKDHGAPSDADRHVGDLGNIVATANKVAKVEIEDSIISLTGANNIVGRTLVVHADP 124
P K VG I+ N VAK S+ + G G L
Sbjct: 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE 121
Query: 125 DDLGKGGHELSKT-----TGN--AGARIACGVIGIAKA 155
+ SK N GAR + G+ A
Sbjct: 122 SGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVA 159
>d1q74a_ c.134.1.1 (A:) 1D-myo-inosityl
2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase
MshD {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 297
Score = 24.6 bits (52), Expect = 5.7
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 116 RTLVVHADPDD--LGKGG 131
R L VHA PDD L G
Sbjct: 4 RLLFVHAHPDDESLSNGA 21
>d1uana_ c.134.1.1 (A:) Hypothetical protein TT1542 {Thermus
thermophilus [TaxId: 274]}
Length = 227
Score = 23.8 bits (50), Expect = 9.4
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 116 RTLVVHADPDD--LGKGG 131
LVV PDD LG GG
Sbjct: 3 DLLVVAPHPDDGELGCGG 20
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.135 0.403
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 573,003
Number of extensions: 24213
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 20
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (22.8 bits)