Query psy9620
Match_columns 453
No_of_seqs 386 out of 2858
Neff 9.6
Searched_HMMs 46136
Date Sat Aug 17 00:25:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331|consensus 100.0 5.3E-74 1.2E-78 554.8 31.1 372 70-441 17-482 (519)
2 PTZ00110 helicase; Provisional 100.0 6.7E-72 1.5E-76 568.2 48.1 381 57-438 70-515 (545)
3 KOG0336|consensus 100.0 5.9E-70 1.3E-74 497.1 26.4 367 67-436 165-601 (629)
4 KOG0333|consensus 100.0 1.4E-63 3.1E-68 468.4 30.6 346 88-437 219-655 (673)
5 KOG0339|consensus 100.0 7.2E-63 1.6E-67 461.5 29.2 372 62-436 169-604 (731)
6 PLN00206 DEAD-box ATP-dependen 100.0 1.5E-61 3.2E-66 491.1 40.5 372 62-435 68-503 (518)
7 KOG0330|consensus 100.0 3.6E-61 7.7E-66 437.6 29.0 311 109-428 57-430 (476)
8 KOG0335|consensus 100.0 4.8E-60 1E-64 450.0 30.9 335 104-439 64-476 (482)
9 KOG0334|consensus 100.0 1.4E-60 2.9E-65 483.6 27.6 372 62-436 310-749 (997)
10 KOG0341|consensus 100.0 7.4E-61 1.6E-65 434.7 20.7 355 76-435 132-557 (610)
11 KOG0328|consensus 100.0 4.4E-58 9.6E-63 400.7 26.3 317 108-433 22-399 (400)
12 COG0513 SrmB Superfamily II DN 100.0 7.4E-57 1.6E-61 453.7 33.5 313 113-431 29-408 (513)
13 KOG0340|consensus 100.0 2.1E-56 4.4E-61 402.0 26.9 306 112-422 6-376 (442)
14 PRK04837 ATP-dependent RNA hel 100.0 7.3E-54 1.6E-58 427.1 33.1 308 111-422 6-377 (423)
15 KOG0338|consensus 100.0 3.2E-54 6.9E-59 403.9 21.9 301 113-418 181-544 (691)
16 PRK04537 ATP-dependent RNA hel 100.0 7.3E-53 1.6E-57 430.1 33.8 307 112-422 8-379 (572)
17 PRK10590 ATP-dependent RNA hel 100.0 8.3E-53 1.8E-57 422.2 33.4 305 114-422 2-367 (456)
18 KOG0326|consensus 100.0 1.9E-54 4.2E-59 383.9 17.6 309 113-431 85-453 (459)
19 PRK11776 ATP-dependent RNA hel 100.0 4.3E-52 9.3E-57 418.8 33.7 299 113-421 4-363 (460)
20 PRK11634 ATP-dependent RNA hel 100.0 6.8E-52 1.5E-56 425.1 33.2 300 112-420 5-365 (629)
21 KOG0342|consensus 100.0 3.3E-52 7E-57 390.0 25.7 304 111-417 80-447 (543)
22 KOG0343|consensus 100.0 1.2E-51 2.7E-56 389.8 25.2 303 110-416 66-432 (758)
23 KOG0345|consensus 100.0 4.1E-51 8.9E-56 380.1 27.0 296 113-411 4-368 (567)
24 PRK11192 ATP-dependent RNA hel 100.0 2.1E-50 4.6E-55 404.0 34.3 304 114-422 2-367 (434)
25 PRK01297 ATP-dependent RNA hel 100.0 4E-50 8.6E-55 405.5 36.2 318 111-432 85-469 (475)
26 KOG0344|consensus 100.0 3.6E-50 7.7E-55 384.9 26.6 337 95-435 113-523 (593)
27 KOG0348|consensus 100.0 5.4E-50 1.2E-54 377.6 25.2 310 108-417 131-564 (708)
28 KOG0346|consensus 100.0 2.7E-50 5.8E-55 371.6 21.2 307 113-421 19-424 (569)
29 KOG0332|consensus 100.0 4.3E-49 9.3E-54 356.8 27.4 316 110-434 87-472 (477)
30 PTZ00424 helicase 45; Provisio 100.0 2.2E-48 4.8E-53 386.6 31.8 308 112-428 27-395 (401)
31 KOG0347|consensus 100.0 6.3E-50 1.4E-54 378.2 14.9 311 108-423 176-586 (731)
32 KOG0327|consensus 100.0 1.8E-47 3.9E-52 349.2 20.6 311 112-433 25-396 (397)
33 TIGR03817 DECH_helic helicase/ 100.0 4E-45 8.7E-50 382.2 31.5 290 119-420 20-401 (742)
34 KOG0337|consensus 100.0 1.3E-44 2.7E-49 332.5 16.5 303 112-421 20-382 (529)
35 PLN03137 ATP-dependent DNA hel 100.0 7.3E-43 1.6E-47 363.4 31.0 277 119-417 443-797 (1195)
36 TIGR00614 recQ_fam ATP-depende 100.0 1E-42 2.2E-47 350.3 29.8 267 130-418 6-344 (470)
37 KOG4284|consensus 100.0 1.2E-43 2.6E-48 340.9 19.8 293 108-409 20-381 (980)
38 PRK11057 ATP-dependent DNA hel 100.0 8.8E-42 1.9E-46 352.2 31.0 273 121-417 10-353 (607)
39 KOG0350|consensus 100.0 1.9E-42 4.2E-47 324.4 22.0 302 113-421 127-554 (620)
40 TIGR01389 recQ ATP-dependent D 100.0 1.5E-40 3.3E-45 344.1 29.0 267 127-417 4-341 (591)
41 PRK02362 ski2-like helicase; P 100.0 9.9E-40 2.1E-44 345.2 28.8 282 114-407 2-397 (737)
42 PRK13767 ATP-dependent helicas 100.0 1.4E-38 3.1E-43 339.4 31.2 284 120-406 18-397 (876)
43 TIGR00580 mfd transcription-re 100.0 9.2E-38 2E-42 329.9 33.6 285 121-422 437-787 (926)
44 PRK00254 ski2-like helicase; P 100.0 4.4E-38 9.5E-43 331.9 29.1 284 114-408 2-389 (720)
45 COG0514 RecQ Superfamily II DN 100.0 3.7E-38 8E-43 311.3 25.9 273 126-419 7-349 (590)
46 PRK10917 ATP-dependent DNA hel 100.0 2.4E-37 5.3E-42 322.5 33.1 293 126-434 253-616 (681)
47 PRK10689 transcription-repair 100.0 6.1E-37 1.3E-41 330.3 33.5 298 122-436 588-953 (1147)
48 TIGR00643 recG ATP-dependent D 100.0 9E-37 1.9E-41 316.3 32.1 299 122-436 223-595 (630)
49 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.1E-37 6.7E-42 317.1 26.4 262 131-406 12-390 (844)
50 COG1201 Lhr Lhr-like helicases 100.0 6.9E-37 1.5E-41 312.9 28.4 283 119-406 7-361 (814)
51 PRK01172 ski2-like helicase; P 100.0 1.1E-36 2.3E-41 320.0 27.2 276 114-408 2-379 (674)
52 PHA02653 RNA helicase NPH-II; 100.0 3.5E-36 7.5E-41 307.8 28.3 263 138-409 167-516 (675)
53 PRK12898 secA preprotein trans 100.0 6.4E-36 1.4E-40 301.1 25.6 260 132-408 101-587 (656)
54 KOG0329|consensus 100.0 7.9E-37 1.7E-41 263.9 12.3 274 113-429 42-378 (387)
55 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.4E-33 7.4E-38 292.4 27.4 256 139-410 6-339 (819)
56 PRK11664 ATP-dependent RNA hel 100.0 5E-33 1.1E-37 291.9 24.7 254 140-409 10-341 (812)
57 PRK09751 putative ATP-dependen 100.0 6.4E-33 1.4E-37 300.7 25.3 241 155-401 1-379 (1490)
58 PRK09200 preprotein translocas 100.0 1.4E-32 3.1E-37 282.7 23.0 260 132-408 76-542 (790)
59 TIGR01587 cas3_core CRISPR-ass 100.0 6E-32 1.3E-36 264.5 24.4 244 152-408 1-337 (358)
60 PRK09401 reverse gyrase; Revie 100.0 8.6E-32 1.9E-36 291.1 28.0 239 132-394 78-431 (1176)
61 PHA02558 uvsW UvsW helicase; P 100.0 3.3E-31 7.2E-36 268.2 28.1 258 133-399 112-444 (501)
62 KOG0351|consensus 100.0 9.4E-32 2E-36 280.7 23.8 269 128-418 257-603 (941)
63 COG1202 Superfamily II helicas 100.0 9.6E-32 2.1E-36 256.5 21.5 280 114-407 195-553 (830)
64 COG1204 Superfamily II helicas 100.0 2.1E-31 4.6E-36 276.2 24.5 280 118-407 14-408 (766)
65 PRK14701 reverse gyrase; Provi 100.0 2.2E-31 4.7E-36 293.7 24.6 272 123-416 67-465 (1638)
66 KOG0352|consensus 100.0 7.8E-32 1.7E-36 248.6 16.6 281 123-417 6-372 (641)
67 TIGR00963 secA preprotein tran 100.0 8.8E-31 1.9E-35 265.4 24.2 261 132-409 54-519 (745)
68 TIGR03714 secA2 accessory Sec 100.0 1.1E-30 2.3E-35 266.5 24.7 171 232-409 360-539 (762)
69 KOG0349|consensus 100.0 1.5E-31 3.4E-36 247.0 13.6 220 186-406 286-614 (725)
70 COG1111 MPH1 ERCC4-like helica 100.0 1.6E-29 3.4E-34 239.6 27.5 267 133-408 13-482 (542)
71 KOG0353|consensus 100.0 3E-30 6.6E-35 235.0 17.0 276 116-409 74-469 (695)
72 KOG0952|consensus 100.0 1.9E-29 4.1E-34 255.4 23.9 282 131-416 106-500 (1230)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 3.6E-29 7.7E-34 242.6 24.2 233 139-392 1-357 (357)
74 COG1205 Distinct helicase fami 100.0 3.4E-29 7.4E-34 263.4 25.4 276 121-406 56-421 (851)
75 TIGR01054 rgy reverse gyrase. 100.0 8.4E-29 1.8E-33 268.4 25.2 235 124-380 67-410 (1171)
76 PRK13766 Hef nuclease; Provisi 100.0 4.9E-28 1.1E-32 259.2 30.5 126 283-409 347-481 (773)
77 KOG0354|consensus 100.0 6.2E-28 1.3E-32 241.6 26.6 265 132-407 59-529 (746)
78 COG1200 RecG RecG-like helicas 100.0 1.2E-26 2.6E-31 229.2 28.0 293 126-434 254-618 (677)
79 PRK11131 ATP-dependent RNA hel 100.0 1.9E-27 4.1E-32 254.2 23.5 255 139-410 78-414 (1294)
80 TIGR00603 rad25 DNA repair hel 100.0 1.4E-26 3E-31 236.4 27.1 268 135-420 255-622 (732)
81 PRK05580 primosome assembly pr 100.0 2.5E-26 5.4E-31 239.1 27.3 263 135-411 144-553 (679)
82 KOG0951|consensus 100.0 1.7E-26 3.6E-31 237.0 24.5 294 119-416 295-711 (1674)
83 PRK09694 helicase Cas3; Provis 99.9 4.9E-25 1.1E-29 231.2 31.9 293 134-437 285-727 (878)
84 PRK12906 secA preprotein trans 99.9 3.5E-26 7.7E-31 234.0 22.4 260 132-408 78-554 (796)
85 TIGR01967 DEAH_box_HrpA ATP-de 99.9 1.6E-25 3.5E-30 240.3 23.4 262 132-410 61-407 (1283)
86 TIGR00595 priA primosomal prot 99.9 1.2E-24 2.7E-29 218.7 22.6 241 154-408 1-382 (505)
87 PRK04914 ATP-dependent helicas 99.9 1.8E-23 3.9E-28 220.9 29.5 123 299-421 492-617 (956)
88 COG1197 Mfd Transcription-repa 99.9 4.4E-23 9.6E-28 214.9 29.2 283 121-420 580-928 (1139)
89 PRK13104 secA preprotein trans 99.9 1.1E-23 2.4E-28 216.8 24.0 127 279-408 424-588 (896)
90 KOG0948|consensus 99.9 2.8E-24 6.1E-29 210.9 18.0 257 135-407 129-539 (1041)
91 KOG0947|consensus 99.9 1.7E-23 3.6E-28 210.4 23.0 260 131-407 294-723 (1248)
92 PRK12904 preprotein translocas 99.9 1.5E-23 3.2E-28 215.7 22.2 260 132-408 79-574 (830)
93 COG1061 SSL2 DNA or RNA helica 99.9 2.9E-23 6.3E-28 206.3 23.1 247 135-394 36-376 (442)
94 COG4098 comFA Superfamily II D 99.9 1E-21 2.2E-26 177.6 26.9 270 134-420 96-428 (441)
95 COG0556 UvrB Helicase subunit 99.9 3.9E-22 8.4E-27 190.1 24.9 168 230-407 385-557 (663)
96 TIGR00631 uvrb excinuclease AB 99.9 4.7E-22 1E-26 204.7 27.2 117 299-416 441-562 (655)
97 KOG0950|consensus 99.9 5.5E-23 1.2E-27 207.9 19.7 288 120-417 207-621 (1008)
98 PRK13107 preprotein translocas 99.9 9.4E-22 2E-26 202.1 21.8 126 281-409 431-593 (908)
99 COG4581 Superfamily II RNA hel 99.9 2.2E-21 4.7E-26 202.3 23.8 268 126-406 111-536 (1041)
100 COG1203 CRISPR-associated heli 99.9 6.1E-21 1.3E-25 200.8 24.1 269 136-412 196-555 (733)
101 PRK12899 secA preprotein trans 99.9 9.5E-21 2.1E-25 195.0 24.7 104 116-227 65-176 (970)
102 PRK12900 secA preprotein trans 99.9 3E-21 6.5E-26 199.1 20.5 127 280-409 579-713 (1025)
103 PRK05298 excinuclease ABC subu 99.9 4.7E-20 1E-24 191.4 26.9 131 299-430 445-589 (652)
104 PRK11448 hsdR type I restricti 99.9 2.4E-20 5.1E-25 201.5 22.1 96 299-396 697-802 (1123)
105 COG1643 HrpA HrpA-like helicas 99.9 5.4E-20 1.2E-24 190.7 22.6 257 137-408 52-388 (845)
106 cd00268 DEADc DEAD-box helicas 99.8 5.8E-20 1.2E-24 165.1 16.3 142 115-259 1-202 (203)
107 COG1198 PriA Primosomal protei 99.8 6.9E-19 1.5E-23 179.9 25.3 269 134-416 197-612 (730)
108 KOG0920|consensus 99.8 2.5E-19 5.5E-24 185.0 20.9 265 135-408 173-545 (924)
109 KOG0922|consensus 99.8 3.5E-18 7.6E-23 167.9 22.3 258 138-410 54-393 (674)
110 COG1110 Reverse gyrase [DNA re 99.8 6.7E-18 1.5E-22 172.3 23.1 226 127-378 74-416 (1187)
111 cd00079 HELICc Helicase superf 99.8 1E-18 2.3E-23 145.2 14.4 120 283-403 12-131 (131)
112 TIGR01407 dinG_rel DnaQ family 99.8 6.1E-18 1.3E-22 181.7 24.0 132 287-421 661-830 (850)
113 KOG0923|consensus 99.8 9.8E-18 2.1E-22 163.4 19.5 258 135-406 265-605 (902)
114 PRK12326 preprotein translocas 99.8 4.3E-17 9.2E-22 164.3 23.6 260 132-408 76-548 (764)
115 PF00271 Helicase_C: Helicase 99.8 2E-18 4.3E-23 129.6 9.0 78 318-395 1-78 (78)
116 PLN03142 Probable chromatin-re 99.7 8.2E-16 1.8E-20 163.7 24.2 124 283-407 471-599 (1033)
117 KOG0924|consensus 99.7 1.3E-16 2.9E-21 155.9 16.2 253 137-407 358-697 (1042)
118 KOG0949|consensus 99.7 3.6E-16 7.9E-21 158.4 18.9 90 327-416 965-1055(1330)
119 PRK13103 secA preprotein trans 99.7 1.5E-15 3.3E-20 156.8 20.2 126 279-408 429-592 (913)
120 PRK07246 bifunctional ATP-depe 99.7 7.3E-15 1.6E-19 156.0 23.9 131 287-421 635-799 (820)
121 KOG4150|consensus 99.7 9.8E-16 2.1E-20 147.2 15.4 267 129-406 280-639 (1034)
122 PRK12903 secA preprotein trans 99.7 4E-15 8.6E-20 152.3 20.4 259 132-408 76-540 (925)
123 KOG0953|consensus 99.7 7.3E-15 1.6E-19 141.2 18.7 245 150-416 191-485 (700)
124 KOG0926|consensus 99.7 6.9E-15 1.5E-19 146.4 18.7 80 327-407 607-704 (1172)
125 CHL00122 secA preprotein trans 99.6 2E-14 4.4E-19 147.9 21.7 83 132-225 74-156 (870)
126 KOG0925|consensus 99.6 3.5E-14 7.5E-19 134.5 21.1 273 112-407 24-387 (699)
127 smart00490 HELICc helicase sup 99.6 1.4E-15 3.1E-20 115.1 9.2 81 315-395 2-82 (82)
128 TIGR00348 hsdR type I site-spe 99.6 7.9E-14 1.7E-18 145.7 24.6 94 300-394 514-634 (667)
129 PF00270 DEAD: DEAD/DEAH box h 99.6 2.8E-15 6.2E-20 130.4 11.2 83 137-225 1-83 (169)
130 KOG0951|consensus 99.6 6.7E-15 1.5E-19 152.6 12.7 321 77-417 1085-1504(1674)
131 PRK08074 bifunctional ATP-depe 99.6 6.1E-13 1.3E-17 143.9 25.4 134 287-420 739-908 (928)
132 COG4096 HsdR Type I site-speci 99.6 1.1E-13 2.3E-18 139.9 17.3 252 135-394 165-525 (875)
133 PRK12902 secA preprotein trans 99.5 1.7E-12 3.7E-17 133.7 22.4 82 132-224 83-164 (939)
134 COG4889 Predicted helicase [Ge 99.5 2E-13 4.3E-18 137.3 14.7 123 302-424 462-618 (1518)
135 TIGR03117 cas_csf4 CRISPR-asso 99.5 3.2E-11 7E-16 123.1 27.1 130 288-419 458-629 (636)
136 KOG1123|consensus 99.4 1.9E-12 4.1E-17 123.2 13.2 244 134-394 301-634 (776)
137 COG1199 DinG Rad3-related DNA 99.4 2.2E-11 4.7E-16 128.6 22.2 137 284-423 463-635 (654)
138 KOG0387|consensus 99.4 4E-11 8.6E-16 120.3 21.2 125 282-407 529-658 (923)
139 PRK12901 secA preprotein trans 99.4 1.8E-11 3.9E-16 127.6 18.4 125 281-408 610-742 (1112)
140 PF06862 DUF1253: Protein of u 99.4 4.8E-11 1E-15 116.0 18.5 187 230-416 214-424 (442)
141 KOG2340|consensus 99.3 5.8E-11 1.3E-15 114.0 15.0 186 231-416 469-677 (698)
142 KOG0390|consensus 99.3 4.8E-10 1E-14 115.1 22.3 102 302-403 597-701 (776)
143 KOG0385|consensus 99.2 4.9E-10 1.1E-14 112.2 18.8 126 282-408 470-600 (971)
144 PRK14873 primosome assembly pr 99.2 8.5E-10 1.8E-14 114.2 20.8 60 156-225 166-225 (665)
145 TIGR00604 rad3 DNA repair heli 99.2 4.4E-09 9.5E-14 111.5 25.3 121 286-407 508-674 (705)
146 smart00487 DEXDc DEAD-like hel 99.2 3.8E-10 8.3E-15 100.2 13.0 126 131-262 4-191 (201)
147 TIGR02562 cas3_yersinia CRISPR 99.1 3.7E-09 8E-14 111.2 16.3 91 303-396 759-881 (1110)
148 KOG1000|consensus 99.0 2.6E-08 5.6E-13 95.4 16.7 105 299-403 491-597 (689)
149 KOG0384|consensus 99.0 4.3E-09 9.3E-14 110.5 12.5 110 299-408 698-812 (1373)
150 KOG0389|consensus 98.9 3.8E-08 8.3E-13 99.2 17.3 126 282-408 760-889 (941)
151 KOG0392|consensus 98.9 9.1E-09 2E-13 107.8 13.3 127 282-408 1309-1455(1549)
152 COG0653 SecA Preprotein transl 98.9 3.1E-08 6.8E-13 102.3 14.1 124 282-408 412-546 (822)
153 PF02399 Herpes_ori_bp: Origin 98.8 6.8E-07 1.5E-11 92.1 22.1 240 152-407 51-388 (824)
154 KOG1002|consensus 98.8 3.5E-07 7.6E-12 87.8 17.5 126 283-408 620-750 (791)
155 PF04851 ResIII: Type III rest 98.7 5.2E-08 1.1E-12 85.6 7.4 66 135-211 3-75 (184)
156 KOG0921|consensus 98.6 1.1E-07 2.4E-12 97.0 8.7 106 300-406 643-773 (1282)
157 smart00489 DEXDc3 DEAD-like he 98.6 2.3E-07 5.1E-12 87.4 9.7 74 135-210 8-85 (289)
158 smart00488 DEXDc2 DEAD-like he 98.6 2.3E-07 5.1E-12 87.4 9.7 74 135-210 8-85 (289)
159 PRK11747 dinG ATP-dependent DN 98.5 2.6E-06 5.7E-11 90.0 16.5 129 286-419 521-688 (697)
160 cd00046 DEXDc DEAD-like helica 98.5 6E-07 1.3E-11 74.6 9.1 70 151-227 1-70 (144)
161 PF13307 Helicase_C_2: Helicas 98.4 4.6E-07 1E-11 78.2 6.8 108 298-407 7-150 (167)
162 KOG4439|consensus 98.3 2.9E-05 6.2E-10 78.1 17.5 121 281-401 727-850 (901)
163 KOG0386|consensus 98.2 1.8E-05 4E-10 82.4 12.4 122 284-406 711-835 (1157)
164 PRK11747 dinG ATP-dependent DN 98.1 8.1E-06 1.7E-10 86.3 9.2 65 132-204 23-96 (697)
165 KOG0952|consensus 98.1 1.1E-06 2.3E-11 91.7 1.6 89 133-227 925-1014(1230)
166 KOG0391|consensus 98.0 4.5E-05 9.7E-10 80.5 12.2 143 282-436 1259-1409(1958)
167 COG0553 HepA Superfamily II DN 98.0 9.4E-05 2E-09 81.3 14.2 125 283-408 692-823 (866)
168 KOG0388|consensus 97.9 6.5E-05 1.4E-09 75.6 10.3 127 281-408 1026-1155(1185)
169 PF07652 Flavi_DEAD: Flaviviru 97.8 4.3E-05 9.3E-10 62.7 5.9 53 150-209 4-56 (148)
170 PF13245 AAA_19: Part of AAA d 97.8 9E-05 2E-09 54.5 7.0 60 143-206 2-62 (76)
171 TIGR00596 rad1 DNA repair prot 97.8 0.00012 2.5E-09 77.9 10.1 43 280-322 267-317 (814)
172 COG0610 Type I site-specific r 97.8 0.0013 2.8E-08 72.0 18.1 81 340-423 581-667 (962)
173 PF13086 AAA_11: AAA domain; P 97.6 0.00021 4.6E-09 65.1 7.2 73 135-208 1-75 (236)
174 PF07517 SecA_DEAD: SecA DEAD- 97.4 0.00077 1.7E-08 62.2 9.0 84 131-225 74-157 (266)
175 smart00492 HELICc3 helicase su 97.4 0.0016 3.4E-08 54.3 9.9 77 330-406 27-137 (141)
176 smart00491 HELICc2 helicase su 97.4 0.0012 2.6E-08 55.1 9.0 70 337-406 31-138 (142)
177 KOG1802|consensus 97.3 0.0006 1.3E-08 68.5 7.6 85 127-222 402-486 (935)
178 PF00580 UvrD-helicase: UvrD/R 97.3 0.00073 1.6E-08 64.6 7.3 69 136-210 1-69 (315)
179 PF00176 SNF2_N: SNF2 family N 97.2 0.0032 7E-08 59.7 10.5 87 150-240 25-116 (299)
180 KOG1015|consensus 97.2 0.0021 4.5E-08 67.2 9.4 120 283-403 1126-1271(1567)
181 COG3973 Superfamily I DNA and 97.1 0.028 6E-07 56.6 16.0 92 118-211 187-285 (747)
182 PF13604 AAA_30: AAA domain; P 97.0 0.0021 4.5E-08 57.1 7.4 63 135-205 1-65 (196)
183 TIGR00376 DNA helicase, putati 97.0 0.0024 5.1E-08 67.0 8.2 68 134-209 156-224 (637)
184 PF02562 PhoH: PhoH-like prote 96.7 0.0027 6E-08 56.1 5.5 59 134-198 3-61 (205)
185 KOG1803|consensus 96.7 0.0044 9.5E-08 62.1 7.1 65 135-207 185-250 (649)
186 PTZ00146 fibrillarin; Provisio 96.6 0.0051 1.1E-07 57.3 6.3 37 133-169 107-151 (293)
187 PRK15483 type III restriction- 96.6 0.0065 1.4E-07 65.3 7.7 73 350-422 501-583 (986)
188 PRK14873 primosome assembly pr 96.3 0.03 6.4E-07 58.9 11.0 94 281-376 170-265 (665)
189 PTZ00146 fibrillarin; Provisio 96.3 0.0096 2.1E-07 55.5 6.5 10 330-339 242-251 (293)
190 PF13871 Helicase_C_4: Helicas 96.3 0.024 5.2E-07 52.5 8.8 67 341-407 52-127 (278)
191 PF12340 DUF3638: Protein of u 96.3 0.032 6.9E-07 50.0 9.3 86 114-209 4-92 (229)
192 PRK05580 primosome assembly pr 96.3 0.029 6.2E-07 59.6 10.6 92 282-375 173-265 (679)
193 TIGR00595 priA primosomal prot 96.2 0.029 6.2E-07 57.4 10.0 90 283-374 9-99 (505)
194 PRK10917 ATP-dependent DNA hel 96.1 0.033 7.1E-07 59.3 9.9 75 300-374 310-389 (681)
195 PRK11054 helD DNA helicase IV; 96.0 0.033 7.2E-07 58.9 9.3 79 134-218 195-273 (684)
196 PRK10536 hypothetical protein; 95.9 0.021 4.5E-07 52.2 6.5 61 132-198 56-116 (262)
197 COG2805 PilT Tfp pilus assembl 95.9 0.014 3E-07 53.9 5.1 52 108-178 101-152 (353)
198 PRK13833 conjugal transfer pro 95.8 0.028 6E-07 53.6 7.1 65 126-198 121-186 (323)
199 PRK13894 conjugal transfer ATP 95.6 0.03 6.4E-07 53.5 6.7 66 125-198 124-190 (319)
200 KOG1596|consensus 95.6 0.039 8.4E-07 49.1 6.7 34 132-165 130-171 (317)
201 PRK10919 ATP-dependent DNA hel 95.6 0.03 6.6E-07 59.4 7.1 70 135-210 2-71 (672)
202 TIGR00643 recG ATP-dependent D 95.4 0.065 1.4E-06 56.5 9.1 74 300-373 284-362 (630)
203 COG1198 PriA Primosomal protei 95.4 0.069 1.5E-06 56.2 8.8 96 276-373 222-318 (730)
204 COG1110 Reverse gyrase [DNA re 95.1 0.11 2.4E-06 55.6 9.2 65 297-361 122-192 (1187)
205 TIGR02782 TrbB_P P-type conjug 95.1 0.071 1.5E-06 50.6 7.2 66 125-198 108-174 (299)
206 KOG0701|consensus 95.1 0.017 3.6E-07 65.0 3.3 93 302-394 294-398 (1606)
207 TIGR01075 uvrD DNA helicase II 95.0 0.05 1.1E-06 58.4 6.9 71 134-210 3-73 (715)
208 TIGR00580 mfd transcription-re 95.0 0.12 2.5E-06 56.7 9.6 75 300-374 500-579 (926)
209 TIGR01448 recD_rel helicase, p 95.0 0.1 2.2E-06 55.8 8.9 67 131-204 320-386 (720)
210 TIGR02768 TraA_Ti Ti-type conj 95.0 0.13 2.8E-06 55.2 9.7 62 135-204 352-414 (744)
211 TIGR01074 rep ATP-dependent DN 94.9 0.091 2E-06 56.0 8.4 69 136-210 2-70 (664)
212 PRK13889 conjugal transfer rel 94.9 0.13 2.8E-06 56.4 9.4 64 131-203 343-407 (988)
213 PRK11773 uvrD DNA-dependent he 94.9 0.064 1.4E-06 57.6 7.0 71 134-210 8-78 (721)
214 PF10593 Z1: Z1 domain; Inter 94.7 0.15 3.3E-06 46.6 8.1 103 324-435 110-217 (239)
215 PRK10875 recD exonuclease V su 94.7 0.13 2.8E-06 53.6 8.5 67 137-207 154-220 (615)
216 KOG1133|consensus 94.5 2.5 5.4E-05 43.8 16.6 140 286-438 615-801 (821)
217 TIGR01447 recD exodeoxyribonuc 94.5 0.13 2.9E-06 53.4 8.1 69 137-208 147-215 (586)
218 COG4962 CpaF Flp pilus assembl 94.4 0.061 1.3E-06 50.9 4.8 61 132-201 154-215 (355)
219 PHA00370 III attachment protei 94.4 0.11 2.4E-06 46.1 6.0 11 185-195 243-253 (297)
220 PF05970 PIF1: PIF1-like helic 94.3 0.11 2.3E-06 51.0 6.6 60 135-202 1-66 (364)
221 TIGR02785 addA_Gpos recombinat 94.2 0.12 2.6E-06 58.8 7.6 66 136-208 2-67 (1232)
222 KOG1596|consensus 94.1 0.17 3.6E-06 45.2 6.5 6 187-192 158-163 (317)
223 PRK10689 transcription-repair 94.0 0.19 4.2E-06 56.3 8.6 74 300-373 649-727 (1147)
224 PHA00370 III attachment protei 94.0 0.25 5.4E-06 44.0 7.5 6 22-27 102-107 (297)
225 COG4371 Predicted membrane pro 94.0 0.098 2.1E-06 46.4 5.0 12 161-172 177-188 (334)
226 PRK13851 type IV secretion sys 93.9 0.079 1.7E-06 51.1 4.7 44 146-198 158-201 (344)
227 COG0513 SrmB Superfamily II DN 93.8 0.27 6E-06 50.4 8.8 86 285-374 81-180 (513)
228 COG1419 FlhF Flagellar GTP-bin 93.8 3.2 6.8E-05 40.6 15.2 64 150-220 203-266 (407)
229 PF01695 IstB_IS21: IstB-like 93.8 0.1 2.2E-06 45.4 4.8 46 148-202 45-90 (178)
230 PRK13900 type IV secretion sys 93.8 0.16 3.5E-06 48.9 6.6 43 147-198 157-199 (332)
231 PF02534 T4SS-DNA_transf: Type 93.6 0.12 2.6E-06 52.7 5.7 50 151-210 45-94 (469)
232 TIGR01073 pcrA ATP-dependent D 93.6 0.22 4.7E-06 53.7 7.8 71 134-210 3-73 (726)
233 TIGR02524 dot_icm_DotB Dot/Icm 93.5 0.16 3.4E-06 49.5 6.0 26 149-175 133-158 (358)
234 cd01130 VirB11-like_ATPase Typ 93.4 0.2 4.3E-06 43.9 6.0 32 135-166 9-41 (186)
235 PRK14722 flhF flagellar biosyn 93.4 0.18 3.8E-06 49.2 6.0 23 150-172 137-159 (374)
236 cd01126 TraG_VirD4 The TraG/Tr 93.2 0.079 1.7E-06 52.4 3.5 48 152-209 1-48 (384)
237 TIGR02525 plasmid_TraJ plasmid 93.2 0.25 5.4E-06 48.3 6.8 28 149-177 148-175 (372)
238 KOG1016|consensus 93.2 0.35 7.6E-06 50.2 7.9 117 300-416 719-856 (1387)
239 PRK13897 type IV secretion sys 93.1 0.16 3.5E-06 52.8 5.7 50 151-210 159-208 (606)
240 KOG0339|consensus 93.0 1.3 2.8E-05 44.1 11.2 68 302-373 298-375 (731)
241 PRK13764 ATPase; Provisional 93.0 0.21 4.5E-06 51.7 6.2 27 149-176 256-282 (602)
242 PRK14701 reverse gyrase; Provi 92.9 0.66 1.4E-05 53.9 10.6 61 299-359 121-187 (1638)
243 KOG1133|consensus 92.8 0.13 2.9E-06 52.6 4.5 43 135-177 15-61 (821)
244 cd00268 DEADc DEAD-box helicas 92.8 0.73 1.6E-05 40.8 9.0 83 288-374 54-149 (203)
245 KOG1132|consensus 92.6 0.44 9.6E-06 50.3 7.8 78 135-212 21-136 (945)
246 KOG1131|consensus 92.5 0.71 1.5E-05 46.0 8.8 72 133-208 14-89 (755)
247 PRK08181 transposase; Validate 92.4 0.41 8.9E-06 44.6 6.9 59 136-203 88-150 (269)
248 COG0630 VirB11 Type IV secreto 92.3 0.2 4.4E-06 47.7 4.9 42 133-175 125-167 (312)
249 COG2804 PulE Type II secretory 92.3 0.2 4.3E-06 49.9 4.9 41 136-177 242-284 (500)
250 TIGR03819 heli_sec_ATPase heli 92.0 0.28 6.1E-06 47.4 5.5 63 125-198 154-217 (340)
251 TIGR01420 pilT_fam pilus retra 92.0 0.42 9E-06 46.4 6.7 43 149-198 121-163 (343)
252 COG1200 RecG RecG-like helicas 91.8 0.97 2.1E-05 46.7 9.2 84 288-373 301-389 (677)
253 PRK13850 type IV secretion sys 91.8 0.22 4.7E-06 52.5 4.7 49 151-209 140-188 (670)
254 COG1484 DnaC DNA replication p 91.7 0.33 7.3E-06 44.8 5.5 51 149-208 104-154 (254)
255 TIGR03877 thermo_KaiC_1 KaiC d 91.7 0.29 6.4E-06 44.7 5.0 53 149-210 20-72 (237)
256 PRK10436 hypothetical protein; 91.7 0.37 8.1E-06 48.5 6.1 39 136-175 202-242 (462)
257 PRK12727 flagellar biosynthesi 91.5 18 0.0004 37.1 18.1 21 149-169 349-369 (559)
258 KOG0338|consensus 91.5 1.4 3E-05 43.9 9.4 70 301-374 253-333 (691)
259 PRK05973 replicative DNA helic 91.5 0.56 1.2E-05 42.7 6.4 66 135-210 50-115 (237)
260 COG1219 ClpX ATP-dependent pro 91.4 0.12 2.5E-06 48.3 2.0 21 148-168 95-115 (408)
261 TIGR02760 TraI_TIGR conjugativ 91.4 6.4 0.00014 47.2 16.5 63 135-205 429-493 (1960)
262 PRK13826 Dtr system oriT relax 91.3 1.1 2.5E-05 49.7 9.7 62 135-204 381-443 (1102)
263 KOG0331|consensus 91.2 1.6 3.5E-05 44.1 9.9 90 300-393 165-272 (519)
264 COG1197 Mfd Transcription-repa 90.9 1 2.3E-05 49.4 8.8 75 299-373 642-721 (1139)
265 COG3421 Uncharacterized protei 90.9 1.4 3E-05 44.8 8.9 57 338-394 316-384 (812)
266 cd01129 PulE-GspE PulE/GspE Th 90.8 0.49 1.1E-05 44.0 5.6 38 137-175 65-104 (264)
267 TIGR00614 recQ_fam ATP-depende 90.8 0.91 2E-05 46.2 8.0 59 300-358 51-109 (470)
268 PF06745 KaiC: KaiC; InterPro 90.7 0.33 7.1E-06 44.0 4.3 54 149-210 18-71 (226)
269 PF02456 Adeno_IVa2: Adenoviru 90.7 1.1 2.4E-05 41.8 7.5 41 153-199 90-130 (369)
270 PF00437 T2SE: Type II/IV secr 90.6 0.28 6E-06 45.9 3.8 43 148-198 125-167 (270)
271 cd01124 KaiC KaiC is a circadi 90.6 0.47 1E-05 41.4 5.1 49 153-210 2-50 (187)
272 PRK13876 conjugal transfer cou 90.5 0.34 7.4E-06 51.0 4.7 50 150-209 144-193 (663)
273 PRK05707 DNA polymerase III su 90.5 1.9 4.1E-05 41.5 9.5 86 135-220 3-112 (328)
274 PRK08769 DNA polymerase III su 90.4 1.8 4E-05 41.3 9.2 89 133-222 2-121 (319)
275 COG5008 PilU Tfp pilus assembl 90.4 0.24 5.2E-06 45.1 3.0 15 152-166 129-143 (375)
276 PRK10590 ATP-dependent RNA hel 90.4 1.9 4E-05 43.8 9.8 69 302-374 77-155 (456)
277 PRK04537 ATP-dependent RNA hel 90.3 1.2 2.6E-05 46.5 8.5 70 301-374 85-165 (572)
278 KOG1805|consensus 90.3 2 4.4E-05 46.1 9.9 81 117-209 655-736 (1100)
279 PRK11889 flhF flagellar biosyn 90.2 17 0.00037 35.9 15.5 21 151-171 242-262 (436)
280 PRK13880 conjugal transfer cou 90.2 0.47 1E-05 50.0 5.4 46 151-206 176-221 (636)
281 TIGR02538 type_IV_pilB type IV 90.2 0.36 7.8E-06 50.2 4.5 44 128-175 295-340 (564)
282 TIGR01054 rgy reverse gyrase. 90.1 1.1 2.3E-05 50.7 8.4 60 300-359 121-187 (1171)
283 KOG0347|consensus 90.1 0.69 1.5E-05 46.4 6.0 67 303-373 266-345 (731)
284 PRK06526 transposase; Provisio 90.1 0.38 8.3E-06 44.4 4.2 24 147-170 95-118 (254)
285 PRK06835 DNA replication prote 90.0 1 2.2E-05 43.4 7.1 46 149-203 182-227 (329)
286 PRK13822 conjugal transfer cou 90.0 0.41 8.9E-06 50.3 4.8 50 150-209 224-273 (641)
287 PRK11776 ATP-dependent RNA hel 89.9 1.3 2.8E-05 45.0 8.3 70 301-374 73-153 (460)
288 COG3587 Restriction endonuclea 89.8 0.58 1.3E-05 49.3 5.6 52 152-209 76-127 (985)
289 PRK06921 hypothetical protein; 89.7 2 4.4E-05 39.9 8.7 47 150-204 117-163 (266)
290 PF09848 DUF2075: Uncharacteri 89.5 0.59 1.3E-05 45.6 5.2 52 152-209 3-54 (352)
291 TIGR02767 TraG-Ti Ti-type conj 89.5 0.44 9.5E-06 49.8 4.5 49 151-209 212-260 (623)
292 PRK06871 DNA polymerase III su 89.4 3.5 7.6E-05 39.5 10.2 89 136-224 3-117 (325)
293 PRK11192 ATP-dependent RNA hel 89.3 2 4.4E-05 43.1 9.1 70 301-374 74-153 (434)
294 COG1875 NYN ribonuclease and A 89.2 0.57 1.2E-05 44.7 4.6 65 131-200 224-290 (436)
295 PF00448 SRP54: SRP54-type pro 89.2 3.3 7.2E-05 36.6 9.3 16 153-168 4-19 (196)
296 PF13872 AAA_34: P-loop contai 89.1 4.5 9.8E-05 38.0 10.3 84 116-212 24-117 (303)
297 PRK05703 flhF flagellar biosyn 89.1 20 0.00043 35.9 15.7 20 150-169 221-240 (424)
298 PRK08116 hypothetical protein; 88.9 8.9 0.00019 35.7 12.4 44 152-204 116-159 (268)
299 PRK12726 flagellar biosynthesi 88.9 10 0.00022 37.1 12.9 22 150-171 206-227 (407)
300 PRK08699 DNA polymerase III su 88.8 4 8.7E-05 39.2 10.3 60 136-195 2-80 (325)
301 PRK01297 ATP-dependent RNA hel 88.7 3 6.6E-05 42.5 10.0 72 300-374 162-243 (475)
302 TIGR01389 recQ ATP-dependent D 88.7 1.6 3.4E-05 45.9 8.1 59 300-358 53-111 (591)
303 KOG1513|consensus 88.7 0.77 1.7E-05 48.0 5.4 79 343-421 850-940 (1300)
304 KOG1001|consensus 88.3 0.14 3E-06 53.8 -0.1 102 301-402 540-643 (674)
305 TIGR02533 type_II_gspE general 88.1 0.79 1.7E-05 46.6 5.2 39 136-175 226-266 (486)
306 PRK04328 hypothetical protein; 88.0 0.8 1.7E-05 42.2 4.8 53 149-210 22-74 (249)
307 cd01131 PilT Pilus retraction 87.9 0.67 1.5E-05 41.1 4.1 22 153-175 4-25 (198)
308 PRK14712 conjugal transfer nic 87.9 1.5 3.2E-05 50.6 7.5 65 135-203 835-901 (1623)
309 PF12846 AAA_10: AAA-like doma 87.8 0.72 1.6E-05 43.5 4.5 43 150-200 1-43 (304)
310 PRK08727 hypothetical protein; 87.7 4.3 9.3E-05 36.9 9.3 50 151-209 42-91 (233)
311 TIGR02788 VirB11 P-type DNA tr 87.6 0.74 1.6E-05 44.0 4.4 20 147-166 141-160 (308)
312 PRK12678 transcription termina 87.2 3.9 8.5E-05 42.0 9.2 87 341-438 575-666 (672)
313 PF00270 DEAD: DEAD/DEAH box h 87.1 4.8 0.0001 34.1 9.0 81 290-374 34-125 (169)
314 PRK09183 transposase/IS protei 87.1 1.2 2.6E-05 41.3 5.4 47 147-202 99-145 (259)
315 PRK04837 ATP-dependent RNA hel 87.0 3.5 7.6E-05 41.3 9.1 70 301-374 84-163 (423)
316 PRK12377 putative replication 86.9 1.7 3.8E-05 39.9 6.2 47 150-205 101-147 (248)
317 TIGR02640 gas_vesic_GvpN gas v 86.4 0.7 1.5E-05 43.0 3.4 27 142-168 13-39 (262)
318 TIGR03754 conj_TOL_TraD conjug 86.2 1.8 3.9E-05 45.2 6.5 56 150-213 180-237 (643)
319 TIGR03743 SXT_TraD conjugative 86.2 1.9 4.1E-05 45.4 6.8 55 150-212 176-232 (634)
320 PRK08533 flagellar accessory p 86.1 1.3 2.9E-05 40.2 5.0 54 148-210 22-75 (230)
321 PRK07952 DNA replication prote 85.9 2.4 5.2E-05 38.8 6.6 43 151-202 100-142 (244)
322 TIGR03881 KaiC_arch_4 KaiC dom 85.9 1.2 2.7E-05 40.2 4.8 53 149-210 19-71 (229)
323 smart00382 AAA ATPases associa 85.8 0.53 1.1E-05 38.2 2.1 18 150-167 2-19 (148)
324 TIGR03878 thermo_KaiC_2 KaiC d 85.7 1.7 3.7E-05 40.3 5.7 37 149-193 35-71 (259)
325 cd00009 AAA The AAA+ (ATPases 85.7 2.8 6E-05 34.1 6.5 17 150-166 19-35 (151)
326 PHA02244 ATPase-like protein 85.5 0.8 1.7E-05 44.4 3.3 22 146-167 115-136 (383)
327 PRK09401 reverse gyrase; Revie 85.4 3.4 7.3E-05 46.9 8.6 75 299-373 122-206 (1176)
328 COG0553 HepA Superfamily II DN 85.4 0.89 1.9E-05 50.1 4.2 74 134-212 337-415 (866)
329 PHA02533 17 large terminase pr 85.3 4.1 8.9E-05 42.0 8.6 69 135-209 59-127 (534)
330 cd01127 TrwB Bacterial conjuga 85.2 0.71 1.5E-05 46.0 3.1 47 147-201 39-85 (410)
331 PF10412 TrwB_AAD_bind: Type I 85.1 0.98 2.1E-05 44.6 3.9 49 147-203 12-60 (386)
332 TIGR02760 TraI_TIGR conjugativ 85.1 2.4 5.3E-05 50.6 7.7 63 134-203 1018-1085(1960)
333 PRK12723 flagellar biosynthesi 84.7 2.8 6.1E-05 41.3 6.8 18 151-168 175-192 (388)
334 COG0593 DnaA ATPase involved i 84.1 3.5 7.7E-05 40.6 7.1 90 150-248 113-225 (408)
335 PRK13709 conjugal transfer nic 84.1 3.1 6.7E-05 48.7 7.7 65 135-203 967-1033(1747)
336 PRK11057 ATP-dependent DNA hel 84.0 4.1 8.9E-05 42.9 8.2 59 300-358 65-123 (607)
337 PRK06964 DNA polymerase III su 83.8 7.7 0.00017 37.5 9.3 35 136-170 2-41 (342)
338 cd01122 GP4d_helicase GP4d_hel 83.7 0.56 1.2E-05 43.8 1.5 54 147-208 27-80 (271)
339 PF04665 Pox_A32: Poxvirus A32 83.6 1.4 3E-05 40.1 3.9 36 152-195 15-50 (241)
340 PTZ00110 helicase; Provisional 83.6 5 0.00011 41.7 8.6 71 300-374 203-283 (545)
341 PRK14723 flhF flagellar biosyn 83.6 22 0.00048 38.2 13.2 22 150-171 185-206 (767)
342 PRK07993 DNA polymerase III su 83.6 7.9 0.00017 37.4 9.3 90 135-224 2-118 (334)
343 KOG0745|consensus 83.6 1.3 2.8E-05 43.4 3.8 38 149-196 225-262 (564)
344 PF13555 AAA_29: P-loop contai 83.6 0.7 1.5E-05 32.2 1.5 17 150-166 23-39 (62)
345 PRK06090 DNA polymerase III su 83.3 11 0.00024 36.1 10.0 90 135-224 3-118 (319)
346 TIGR03499 FlhF flagellar biosy 83.2 1.8 3.8E-05 40.8 4.6 20 150-169 194-213 (282)
347 COG0210 UvrD Superfamily I DNA 83.1 3.2 6.9E-05 44.2 7.1 71 135-211 2-72 (655)
348 cd00032 CASc Caspase, interleu 82.9 23 0.0005 32.4 11.8 85 299-389 8-108 (243)
349 PF12775 AAA_7: P-loop contain 82.9 0.66 1.4E-05 43.4 1.6 19 148-166 31-49 (272)
350 PRK05642 DNA replication initi 82.7 5.9 0.00013 36.1 7.7 45 151-204 46-90 (234)
351 KOG1806|consensus 82.6 2.6 5.6E-05 45.5 5.8 72 132-209 735-806 (1320)
352 COG1074 RecB ATP-dependent exo 82.4 2.5 5.5E-05 47.9 6.2 57 149-208 15-71 (1139)
353 TIGR02655 circ_KaiC circadian 82.3 2 4.3E-05 43.9 4.9 56 149-212 20-75 (484)
354 PF05729 NACHT: NACHT domain 82.2 20 0.00043 29.9 10.6 43 300-346 120-162 (166)
355 COG3972 Superfamily I DNA and 82.2 1.6 3.6E-05 43.3 4.0 80 123-210 151-230 (660)
356 TIGR03817 DECH_helic helicase/ 82.1 5.7 0.00012 42.9 8.4 83 287-374 68-163 (742)
357 PF01078 Mg_chelatase: Magnesi 82.0 1.1 2.3E-05 39.7 2.5 19 149-167 21-39 (206)
358 PRK14721 flhF flagellar biosyn 81.9 2.4 5.2E-05 42.1 5.1 20 150-169 191-210 (420)
359 COG0467 RAD55 RecA-superfamily 81.6 2.2 4.8E-05 39.5 4.6 55 149-212 22-76 (260)
360 TIGR02655 circ_KaiC circadian 81.6 2 4.4E-05 43.8 4.7 52 150-210 263-314 (484)
361 PRK14974 cell division protein 81.5 7.5 0.00016 37.5 8.2 50 152-209 142-194 (336)
362 PLN03137 ATP-dependent DNA hel 81.4 5.4 0.00012 44.5 7.9 59 300-358 500-560 (1195)
363 PRK13766 Hef nuclease; Provisi 81.3 10 0.00023 41.3 10.3 72 298-374 56-137 (773)
364 PRK14086 dnaA chromosomal repl 81.1 37 0.0008 35.6 13.4 60 286-347 397-459 (617)
365 COG4185 Uncharacterized protei 80.2 1 2.3E-05 37.8 1.6 38 153-202 5-42 (187)
366 PF07728 AAA_5: AAA domain (dy 79.7 1.2 2.7E-05 36.6 2.0 16 152-167 1-16 (139)
367 KOG0060|consensus 79.5 1.2 2.7E-05 45.1 2.2 20 147-166 458-477 (659)
368 KOG0733|consensus 79.5 3.2 6.9E-05 42.6 5.0 61 106-167 501-562 (802)
369 KOG0330|consensus 79.4 9.8 0.00021 36.8 7.9 83 287-373 115-209 (476)
370 TIGR03880 KaiC_arch_3 KaiC dom 79.4 2.8 6.1E-05 37.8 4.4 53 149-210 15-67 (224)
371 PRK04296 thymidine kinase; Pro 79.3 2.1 4.6E-05 37.6 3.5 36 151-194 3-38 (190)
372 smart00115 CASc Caspase, inter 79.2 24 0.00051 32.3 10.5 72 299-376 7-93 (241)
373 PF13481 AAA_25: AAA domain; P 79.2 5 0.00011 35.0 5.9 61 149-210 31-93 (193)
374 TIGR02784 addA_alphas double-s 79.1 4.3 9.4E-05 46.3 6.7 55 149-208 9-63 (1141)
375 TIGR01425 SRP54_euk signal rec 79.0 16 0.00034 36.5 9.7 17 152-168 102-118 (429)
376 KOG1807|consensus 78.6 4.5 9.8E-05 42.5 5.9 71 135-207 378-448 (1025)
377 PRK11331 5-methylcytosine-spec 78.5 1.9 4.2E-05 42.9 3.2 32 136-167 180-211 (459)
378 KOG1533|consensus 78.5 2.1 4.6E-05 38.4 3.1 25 153-178 5-29 (290)
379 TIGR02237 recomb_radB DNA repa 78.5 3.4 7.3E-05 36.8 4.6 39 149-195 11-49 (209)
380 PRK14087 dnaA chromosomal repl 78.4 9.8 0.00021 38.4 8.3 47 151-204 142-188 (450)
381 KOG0391|consensus 78.3 6.3 0.00014 43.5 7.0 82 135-224 615-700 (1958)
382 COG1120 FepC ABC-type cobalami 78.2 5.4 0.00012 36.7 5.8 18 148-165 26-43 (258)
383 PF13401 AAA_22: AAA domain; P 78.1 1.2 2.7E-05 36.0 1.5 20 149-168 3-22 (131)
384 PF01580 FtsK_SpoIIIE: FtsK/Sp 78.1 3.5 7.6E-05 36.6 4.6 24 149-172 37-60 (205)
385 COG4604 CeuD ABC-type enteroch 78.1 11 0.00023 33.3 7.1 61 287-347 173-233 (252)
386 cd00984 DnaB_C DnaB helicase C 78.0 2.6 5.6E-05 38.5 3.8 40 148-194 11-50 (242)
387 PRK13700 conjugal transfer pro 77.9 2.3 4.9E-05 44.9 3.6 69 122-200 157-227 (732)
388 PF03193 DUF258: Protein of un 77.7 3.1 6.8E-05 35.3 3.9 44 122-165 2-50 (161)
389 COG2256 MGS1 ATPase related to 77.6 6.5 0.00014 38.3 6.3 19 151-169 49-67 (436)
390 PF04364 DNA_pol3_chi: DNA pol 77.6 7.9 0.00017 31.9 6.2 117 285-424 15-133 (137)
391 cd01120 RecA-like_NTPases RecA 77.4 4 8.7E-05 34.1 4.6 38 153-198 2-39 (165)
392 cd00046 DEXDc DEAD-like helica 77.3 17 0.00037 28.9 8.3 73 283-359 12-88 (144)
393 KOG3915|consensus 77.0 6 0.00013 38.7 5.8 14 189-202 224-237 (641)
394 TIGR00150 HI0065_YjeE ATPase, 76.8 1.8 3.9E-05 35.5 2.1 42 149-201 21-62 (133)
395 PF05876 Terminase_GpA: Phage 76.8 2.4 5.2E-05 44.0 3.5 63 134-203 15-79 (557)
396 PF12683 DUF3798: Protein of u 76.8 7.6 0.00016 35.6 6.2 79 298-382 60-144 (275)
397 PF13207 AAA_17: AAA domain; P 76.7 1.8 3.9E-05 34.5 2.1 15 153-167 2-16 (121)
398 KOG0335|consensus 76.6 35 0.00077 34.3 11.2 69 301-373 153-231 (482)
399 cd01363 Motor_domain Myosin an 76.3 2 4.2E-05 37.7 2.3 25 142-166 14-40 (186)
400 PRK06067 flagellar accessory p 75.9 4.4 9.6E-05 36.8 4.7 53 149-210 24-76 (234)
401 TIGR03744 traC_PFL_4706 conjug 75.6 3.3 7.1E-05 45.8 4.3 41 150-197 475-515 (893)
402 PRK10867 signal recognition pa 75.5 20 0.00044 35.9 9.5 18 152-169 102-119 (433)
403 PRK07764 DNA polymerase III su 75.3 52 0.0011 36.1 13.1 21 151-171 38-58 (824)
404 PF07724 AAA_2: AAA domain (Cd 75.2 1.8 3.9E-05 37.3 1.8 16 152-167 5-20 (171)
405 KOG0239|consensus 75.2 76 0.0016 33.8 13.9 36 135-170 369-413 (670)
406 KOG0389|consensus 75.0 16 0.00035 38.8 8.6 61 299-362 447-511 (941)
407 PF13177 DNA_pol3_delta2: DNA 75.0 22 0.00048 30.2 8.5 73 151-224 20-112 (162)
408 KOG0329|consensus 75.0 14 0.0003 33.6 7.2 109 302-417 112-236 (387)
409 PLN02165 adenylate isopentenyl 74.8 1.3 2.7E-05 42.4 0.8 21 149-169 42-62 (334)
410 TIGR00959 ffh signal recogniti 74.6 13 0.00027 37.3 7.7 19 152-170 101-119 (428)
411 COG0514 RecQ Superfamily II DN 74.4 8.3 0.00018 39.9 6.5 59 300-358 57-115 (590)
412 PF13238 AAA_18: AAA domain; P 74.4 1.8 3.9E-05 34.8 1.6 15 153-167 1-15 (129)
413 COG0606 Predicted ATPase with 74.4 2.5 5.5E-05 42.0 2.7 18 149-166 197-214 (490)
414 PF09439 SRPRB: Signal recogni 74.4 2 4.3E-05 37.3 1.8 20 150-169 3-22 (181)
415 TIGR00064 ftsY signal recognit 74.2 7.8 0.00017 36.2 5.9 21 151-171 73-93 (272)
416 KOG0350|consensus 74.2 8.4 0.00018 38.5 6.1 73 302-374 217-301 (620)
417 PF00158 Sigma54_activat: Sigm 74.1 15 0.00033 31.5 7.2 44 146-196 18-61 (168)
418 PRK12422 chromosomal replicati 74.0 20 0.00043 36.2 9.0 43 151-202 142-184 (445)
419 COG1660 Predicted P-loop-conta 73.9 74 0.0016 29.3 14.8 26 309-334 257-283 (286)
420 PF00004 AAA: ATPase family as 73.8 2.2 4.8E-05 34.4 1.9 15 153-167 1-15 (132)
421 PRK13531 regulatory ATPase Rav 73.7 4.3 9.4E-05 40.9 4.2 26 142-167 31-56 (498)
422 TIGR01547 phage_term_2 phage t 73.7 6.9 0.00015 38.8 5.8 52 153-209 4-56 (396)
423 TIGR02012 tigrfam_recA protein 73.5 5.8 0.00013 37.9 4.9 44 149-200 54-97 (321)
424 cd01394 radB RadB. The archaea 73.3 6.9 0.00015 35.0 5.2 36 150-193 19-54 (218)
425 smart00450 RHOD Rhodanese Homo 73.3 8.9 0.00019 28.7 5.2 39 298-336 54-93 (100)
426 COG1111 MPH1 ERCC4-like helica 73.0 24 0.00052 35.5 8.9 70 300-374 58-137 (542)
427 PRK14729 miaA tRNA delta(2)-is 73.0 1.9 4E-05 40.8 1.4 17 151-167 5-21 (300)
428 PRK06995 flhF flagellar biosyn 73.0 6.8 0.00015 39.7 5.5 22 150-171 256-277 (484)
429 cd01393 recA_like RecA is a b 72.9 18 0.00039 32.4 7.9 46 149-196 18-63 (226)
430 PF02367 UPF0079: Uncharacteri 72.7 3.7 8E-05 33.2 2.9 41 148-199 13-53 (123)
431 smart00487 DEXDc DEAD-like hel 72.7 38 0.00082 28.9 9.8 88 283-374 36-135 (201)
432 cd00544 CobU Adenosylcobinamid 72.5 5.2 0.00011 34.4 4.0 45 153-208 2-46 (169)
433 TIGR02759 TraD_Ftype type IV c 72.3 3.9 8.4E-05 42.6 3.7 27 148-175 174-200 (566)
434 TIGR00382 clpX endopeptidase C 72.3 2.9 6.3E-05 41.5 2.6 18 150-167 116-133 (413)
435 KOG0298|consensus 72.2 6.8 0.00015 43.6 5.5 96 299-398 1220-1315(1394)
436 PRK00771 signal recognition pa 72.1 13 0.00029 37.2 7.2 19 151-169 96-114 (437)
437 TIGR02688 conserved hypothetic 72.1 4.5 9.7E-05 40.0 3.8 25 145-169 204-228 (449)
438 PF14532 Sigma54_activ_2: Sigm 72.0 4 8.7E-05 33.6 3.1 26 142-167 13-38 (138)
439 PRK05728 DNA polymerase III su 72.0 56 0.0012 27.1 10.7 122 281-426 11-134 (142)
440 COG1444 Predicted P-loop ATPas 72.0 16 0.00035 38.9 8.1 77 126-208 205-283 (758)
441 cd01524 RHOD_Pyr_redox Member 71.9 7 0.00015 29.3 4.2 36 300-335 51-86 (90)
442 PRK13342 recombination factor 71.9 15 0.00031 36.8 7.6 19 151-169 37-55 (413)
443 COG3267 ExeA Type II secretory 71.7 18 0.00038 33.2 7.2 57 147-210 47-104 (269)
444 TIGR03420 DnaA_homol_Hda DnaA 71.6 6.9 0.00015 35.1 4.9 20 149-168 37-56 (226)
445 KOG1132|consensus 71.5 73 0.0016 34.5 12.5 79 299-378 560-655 (945)
446 TIGR02880 cbbX_cfxQ probable R 71.3 2.3 4.9E-05 40.1 1.6 18 150-167 58-75 (284)
447 PF06309 Torsin: Torsin; Inte 71.1 10 0.00022 30.7 5.0 21 151-171 52-74 (127)
448 TIGR01650 PD_CobS cobaltochela 71.0 4.4 9.6E-05 38.7 3.5 22 146-167 60-81 (327)
449 cd00983 recA RecA is a bacter 70.9 7.4 0.00016 37.3 4.9 44 149-200 54-97 (325)
450 PF13671 AAA_33: AAA domain; P 70.8 2.5 5.3E-05 34.9 1.6 14 153-166 2-15 (143)
451 cd01125 repA Hexameric Replica 70.7 12 0.00026 34.1 6.3 42 152-193 3-48 (239)
452 TIGR02746 TraC-F-type type-IV 70.7 4.9 0.00011 43.9 4.3 39 151-197 431-469 (797)
453 PF01935 DUF87: Domain of unkn 70.7 6.1 0.00013 35.7 4.3 42 150-198 23-64 (229)
454 PF07088 GvpD: GvpD gas vesicl 70.6 4 8.7E-05 39.7 3.0 38 149-195 9-46 (484)
455 PRK06646 DNA polymerase III su 70.6 64 0.0014 27.2 10.7 126 279-427 9-140 (154)
456 PRK11823 DNA repair protein Ra 70.5 6.6 0.00014 39.6 4.8 53 149-210 79-131 (446)
457 PRK09302 circadian clock prote 70.4 6.5 0.00014 40.5 4.9 52 150-210 273-324 (509)
458 PRK09751 putative ATP-dependen 70.3 18 0.0004 41.9 8.6 71 300-374 37-130 (1490)
459 KOG3875|consensus 70.1 11 0.00024 35.1 5.6 9 382-390 324-332 (362)
460 TIGR02881 spore_V_K stage V sp 70.1 2.9 6.2E-05 38.8 2.0 19 151-169 43-61 (261)
461 cd00071 GMPK Guanosine monopho 70.0 3 6.6E-05 34.4 1.9 14 153-166 2-15 (137)
462 cd03115 SRP The signal recogni 69.8 9.7 0.00021 32.6 5.2 17 153-169 3-19 (173)
463 PRK08084 DNA replication initi 69.7 7 0.00015 35.6 4.4 19 150-168 45-63 (235)
464 COG1205 Distinct helicase fami 69.6 21 0.00045 39.2 8.6 70 285-358 100-175 (851)
465 TIGR00631 uvrb excinuclease AB 69.6 45 0.00098 35.5 10.9 107 278-388 36-173 (655)
466 PRK12724 flagellar biosynthesi 69.6 10 0.00023 37.6 5.8 21 152-172 225-245 (432)
467 COG1126 GlnQ ABC-type polar am 69.5 4.2 9E-05 36.2 2.7 18 148-165 26-43 (240)
468 PRK08939 primosomal protein Dn 69.5 7.3 0.00016 37.1 4.6 18 150-167 156-173 (306)
469 PRK09361 radB DNA repair and r 69.4 5.2 0.00011 36.1 3.5 24 149-172 22-45 (225)
470 cd01368 KISc_KIF23_like Kinesi 68.8 3.6 7.9E-05 39.9 2.5 25 143-167 80-106 (345)
471 COG3451 VirB4 Type IV secretor 68.8 5.3 0.00011 43.3 3.9 23 151-173 437-459 (796)
472 TIGR03015 pepcterm_ATPase puta 68.6 5.8 0.00013 36.7 3.8 33 135-167 23-60 (269)
473 TIGR00390 hslU ATP-dependent p 68.2 6.6 0.00014 38.9 4.0 17 151-167 48-64 (441)
474 COG4098 comFA Superfamily II D 68.2 1.1E+02 0.0023 29.6 11.6 149 232-408 89-243 (441)
475 PF05496 RuvB_N: Holliday junc 68.2 6.8 0.00015 35.2 3.8 18 152-169 52-69 (233)
476 PTZ00454 26S protease regulato 68.2 3.5 7.5E-05 40.9 2.2 55 110-167 139-196 (398)
477 PRK08903 DnaA regulatory inact 68.1 6.9 0.00015 35.3 4.1 19 149-167 41-59 (227)
478 cd01370 KISc_KIP3_like Kinesin 68.0 3.8 8.2E-05 39.7 2.4 25 143-167 79-105 (338)
479 PRK09302 circadian clock prote 67.9 8.8 0.00019 39.5 5.2 55 149-211 30-84 (509)
480 COG1223 Predicted ATPase (AAA+ 67.6 2.9 6.4E-05 38.2 1.4 17 150-166 151-167 (368)
481 PRK06893 DNA replication initi 67.5 6.5 0.00014 35.6 3.7 18 151-168 40-57 (229)
482 PF03668 ATP_bind_2: P-loop AT 67.4 1.1E+02 0.0024 28.7 15.9 27 309-335 256-282 (284)
483 PRK09354 recA recombinase A; P 67.4 9.1 0.0002 37.0 4.8 44 149-200 59-102 (349)
484 KOG3875|consensus 67.4 9.3 0.0002 35.6 4.5 8 141-148 200-207 (362)
485 TIGR00963 secA preprotein tran 67.3 23 0.00049 37.9 8.0 54 300-359 97-154 (745)
486 KOG0989|consensus 67.1 5.8 0.00013 37.2 3.2 32 140-171 41-78 (346)
487 cd01367 KISc_KIF2_like Kinesin 66.9 4.1 8.8E-05 39.2 2.4 26 141-166 74-101 (322)
488 COG0133 TrpB Tryptophan syntha 66.8 31 0.00068 32.6 7.8 193 155-391 106-322 (396)
489 PRK07940 DNA polymerase III su 66.5 22 0.00047 35.2 7.4 103 151-253 37-168 (394)
490 cd01533 4RHOD_Repeat_2 Member 66.4 16 0.00035 28.4 5.4 54 286-339 52-107 (109)
491 COG1224 TIP49 DNA helicase TIP 66.4 3.3 7.2E-05 39.6 1.6 21 148-168 63-83 (450)
492 KOG3915|consensus 66.3 5.6 0.00012 38.9 3.1 29 19-47 63-91 (641)
493 PF06068 TIP49: TIP49 C-termin 66.2 4.1 8.9E-05 39.4 2.1 24 148-171 48-71 (398)
494 PRK05342 clpX ATP-dependent pr 66.1 4 8.7E-05 40.6 2.2 24 148-171 106-129 (412)
495 COG3587 Restriction endonuclea 66.0 13 0.00028 39.8 5.8 76 348-423 481-569 (985)
496 cd01373 KISc_KLP2_like Kinesin 66.0 4.6 0.0001 39.1 2.6 26 141-166 64-91 (337)
497 PRK12402 replication factor C 66.0 6.8 0.00015 37.7 3.8 34 138-171 22-57 (337)
498 PF03354 Terminase_1: Phage Te 65.9 22 0.00048 36.2 7.6 68 138-209 1-77 (477)
499 PF01745 IPT: Isopentenyl tran 65.8 4.2 9E-05 36.2 2.0 19 153-171 4-22 (233)
500 CHL00181 cbbX CbbX; Provisiona 65.7 4 8.7E-05 38.5 2.0 22 150-171 59-80 (287)
No 1
>KOG0331|consensus
Probab=100.00 E-value=5.3e-74 Score=554.75 Aligned_cols=372 Identities=61% Similarity=1.011 Sum_probs=343.7
Q ss_pred CCCccccCCCCCCcccCCCCHHHHHHHHHHcCCeeccc--CCCccccccc-----------------------------c
Q psy9620 70 NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKGN--APNPITEFAE-----------------------------A 118 (453)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~p~~~f~~-----------------------------~ 118 (453)
.++++.+++|.+++........+...++..+++++.+. .|.|+.+|++ +
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 96 (519)
T KOG0331|consen 17 DLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQEL 96 (519)
T ss_pred ccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhcc
Confidence 67899999999998888888888888888888877664 5766655544 4
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhh-cCCCCCCCCcEEEEEcCCHH
Q psy9620 119 NFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINH-QSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 119 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~-~~~~~~~~~~~vlil~Ptr~ 197 (453)
++++.+...++..||..|||||+++||.+++|+|++.+|.||||||++|++|++.++.. ......+.+|++|||+||||
T Consensus 97 ~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRE 176 (519)
T KOG0331|consen 97 GLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRE 176 (519)
T ss_pred cccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHH
Confidence 45666777778999999999999999999999999999999999999999999999998 56666778999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------------------------
Q psy9620 198 LAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------------ 229 (453)
Q Consensus 198 La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------------ 229 (453)
||.|+.+.+.+++....+++.|+|||.+...|
T Consensus 177 LA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGF 256 (519)
T KOG0331|consen 177 LAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGF 256 (519)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhcccc
Confidence 99999999999999999999999999998877
Q ss_pred -------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccc-ccccCccceeEEEEccccchhhhHHHHHHhh
Q psy9620 230 -------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL-TLSANHNIQQVVEVCAEHEKENKLFGLLNDI 295 (453)
Q Consensus 230 -------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 295 (453)
+++|++|+|||||.+++.++..|+.+++.+.+... .+.+.+++.|++..+....|..+|..+|..+
T Consensus 257 e~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~ 336 (519)
T KOG0331|consen 257 EPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDI 336 (519)
T ss_pred HHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHH
Confidence 56699999999999999999999999999999876 7788999999999999999999999999998
Q ss_pred hcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 296 SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 296 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
....++|+||||+|++.|++|+..|...++++..|||+++|.+|+.+++.|++|+..||||||+++||||||+|++||||
T Consensus 337 ~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIny 416 (519)
T KOG0331|consen 337 SSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINY 416 (519)
T ss_pred hccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeC
Confidence 76677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHhhcCCCC
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASRSGGSG 441 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~~~~~~~ 441 (453)
|+|.++++|+||+|||||+|+.|.+++||+..+...+..++++++++++.|++.|..++...+..+
T Consensus 417 dfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~~~~ 482 (519)
T KOG0331|consen 417 DFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSGSGG 482 (519)
T ss_pred CCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhcccCC
Confidence 999999999999999999999999999999999999999999999999999999999988765444
No 2
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=6.7e-72 Score=568.18 Aligned_cols=381 Identities=56% Similarity=0.953 Sum_probs=348.6
Q ss_pred CCCCCCcccccCC--CCCccccCCCCCCcccCCCCHHHHHHHHHHcCCee-ccc-CCCccccccccCCCHHHHHHHHHCC
Q psy9620 57 STMGGALRAIDWG--NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTL-KGN-APNPITEFAEANFPDYVLKEVKRQG 132 (453)
Q Consensus 57 ~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~p~p~~~f~~~~l~~~l~~~l~~~g 132 (453)
...+..+..++|+ +++||+++||.+++.+..++.+++..++....+.+ .+. +|.|+.+|++++|++++++.|+++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g 149 (545)
T PTZ00110 70 STLGKRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAG 149 (545)
T ss_pred cccccccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCC
Confidence 4446678889997 88999999999999999999999999999998886 566 8999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
|.+|||+|.++||.+++|+|+|++||||||||++|++|++.++...+......+|.+|||+||+|||.|+.+.+.+++..
T Consensus 150 ~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~ 229 (545)
T PTZ00110 150 FTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGAS 229 (545)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999987765555567899999999999999999999999988
Q ss_pred CCceEEEEeCCccCCCC------------------------------------------------------------CCc
Q psy9620 213 TYLRSTCVYGGASKGPQ------------------------------------------------------------PDR 232 (453)
Q Consensus 213 ~~~~~~~~~gg~~~~~~------------------------------------------------------------~~~ 232 (453)
..+++.+++|+.....+ +++
T Consensus 230 ~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~ 309 (545)
T PTZ00110 230 SKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 309 (545)
T ss_pred cCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCC
Confidence 89999999998754321 678
Q ss_pred eEEEEeccCcHHHHHHHHHhhc-cceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchh
Q psy9620 233 QVLMWSATWPREVQKLAEDFLD-SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 311 (453)
Q Consensus 233 q~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~ 311 (453)
|+++||||||.+++.+++.++. +++.+.+..........+.+.+..+...+|...|..++..+.. ...++||||++++
T Consensus 310 q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~-~~~k~LIF~~t~~ 388 (545)
T PTZ00110 310 QTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMR-DGDKILIFVETKK 388 (545)
T ss_pred eEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcc-cCCeEEEEecChH
Confidence 9999999999999999999886 5777777766666667888888888888888888888887643 4679999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcc
Q psy9620 312 KVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRT 391 (453)
Q Consensus 312 ~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRa 391 (453)
.|+.++..|...++.+..+||+|++.+|++++++|++|+++|||||+++++|||+|+|++||+||+|.++++|+||+||+
T Consensus 389 ~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRt 468 (545)
T PTZ00110 389 GADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRT 468 (545)
T ss_pred HHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHhhcC
Q psy9620 392 GRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASRSG 438 (453)
Q Consensus 392 gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~~~~ 438 (453)
||+|..|.|++|+++++...+++|+++|++.+++||++|.+|+....
T Consensus 469 GR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~ 515 (545)
T PTZ00110 469 GRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERS 515 (545)
T ss_pred ccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999997654
No 3
>KOG0336|consensus
Probab=100.00 E-value=5.9e-70 Score=497.09 Aligned_cols=367 Identities=41% Similarity=0.755 Sum_probs=338.0
Q ss_pred cCCCCCccccCCCCCCcccCCCCHHHHHHHHHHc-CCeec----cc---CCCcccccccc-CCCHHHHHHHHHCCCCCCC
Q psy9620 67 DWGNLPPFEKNFFHPSPSVLNRSPHEVQAFRDKH-QMTLK----GN---APNPITEFAEA-NFPDYVLKEVKRQGFDRPT 137 (453)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~---~p~p~~~f~~~-~l~~~l~~~l~~~g~~~~~ 137 (453)
.|.++||..++||.+.++..+++++++.+|+.+. .|+.. +. +|+|.-+|+++ .-.+.+++++++.||.+||
T Consensus 165 kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPt 244 (629)
T KOG0336|consen 165 KWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPT 244 (629)
T ss_pred ccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCC
Confidence 4668999999999999999999999999999876 34432 22 89999999886 6789999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCC-CCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCce
Q psy9620 138 PIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLK-PGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLR 216 (453)
Q Consensus 138 ~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~ 216 (453)
|+|++|||++|+|+|++.+|+||+|||++|++|.+.++..++... ...+|.+|+++|||||+.|+.-++.++. ..+++
T Consensus 245 PIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~k 323 (629)
T KOG0336|consen 245 PIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLK 323 (629)
T ss_pred cchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcc
Confidence 999999999999999999999999999999999999887765432 3468999999999999999999888874 46789
Q ss_pred EEEEeCCccCCCC------------------------------------------------------------CCceEEE
Q psy9620 217 STCVYGGASKGPQ------------------------------------------------------------PDRQVLM 236 (453)
Q Consensus 217 ~~~~~gg~~~~~~------------------------------------------------------------~~~q~v~ 236 (453)
.+|++|+.+...+ +++|++|
T Consensus 324 svc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvm 403 (629)
T KOG0336|consen 324 SVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVM 403 (629)
T ss_pred eEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeee
Confidence 9999999887765 8999999
Q ss_pred EeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHH
Q psy9620 237 WSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKI 316 (453)
Q Consensus 237 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l 316 (453)
.|||||+.+++++..|+++++.+.++.+.+.....++|.+.+..+.+|...+..++.... ...++||||..+..|+.|
T Consensus 404 TSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms--~ndKvIiFv~~K~~AD~L 481 (629)
T KOG0336|consen 404 TSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMS--SNDKVIIFVSRKVMADHL 481 (629)
T ss_pred ecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcC--CCceEEEEEechhhhhhc
Confidence 999999999999999999999999999999999999999988888888877777776653 356999999999999999
Q ss_pred HHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCC
Q psy9620 317 TKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDN 396 (453)
Q Consensus 317 ~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~ 396 (453)
...|...++.+..+||+.++.+|+.+++.|++|+++||||||+++||||+++|+||+|||+|.++++|+||+||+||+|.
T Consensus 482 SSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr 561 (629)
T KOG0336|consen 482 SSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGR 561 (629)
T ss_pred cchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHhh
Q psy9620 397 TGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASR 436 (453)
Q Consensus 397 ~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~~ 436 (453)
.|.+++|++.+|...+.+|+++|++++|+||++|..||++
T Consensus 562 ~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAer 601 (629)
T KOG0336|consen 562 TGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAER 601 (629)
T ss_pred CcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999975
No 4
>KOG0333|consensus
Probab=100.00 E-value=1.4e-63 Score=468.37 Aligned_cols=346 Identities=38% Similarity=0.653 Sum_probs=316.1
Q ss_pred CCHHHHHHHHHHcCCeeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhh
Q psy9620 88 RSPHEVQAFRDKHQMTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~ 166 (453)
++..+..-|++.+.|.++|. +|.|+.+|++.+||..+++.+.+.||..|+|+|.++||..++.+|+|.+|.||||||++
T Consensus 219 m~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaa 298 (673)
T KOG0333|consen 219 MTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAA 298 (673)
T ss_pred cCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCcccc
Confidence 33444555566778888887 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCCCC----CCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------
Q psy9620 167 YMLPAIVHINHQSQLKP----GDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------- 229 (453)
Q Consensus 167 ~~l~~l~~~~~~~~~~~----~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------- 229 (453)
|++|++..+...++... ..+|.++||+|||+|++|+.++-.+|++..+++++.+.||.+...+
T Consensus 299 f~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceivia 378 (673)
T KOG0333|consen 299 FLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIA 378 (673)
T ss_pred chhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeec
Confidence 99999999988775433 4689999999999999999999999999999999999999887665
Q ss_pred ------------------------------------------------------------------------CCceEEEE
Q psy9620 230 ------------------------------------------------------------------------PDRQVLMW 237 (453)
Q Consensus 230 ------------------------------------------------------------------------~~~q~v~~ 237 (453)
.-+|++||
T Consensus 379 tPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mf 458 (673)
T KOG0333|consen 379 TPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMF 458 (673)
T ss_pred CchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEE
Confidence 23899999
Q ss_pred eccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHH
Q psy9620 238 SATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKIT 317 (453)
Q Consensus 238 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~ 317 (453)
|||+|+.++.+++.|+.+|+.+.++... ....-++|.+.++.+.+|..+|.++|... ...++|||+|+++.|+.|+
T Consensus 459 tatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~~---~~ppiIIFvN~kk~~d~lA 534 (673)
T KOG0333|consen 459 TATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILESN---FDPPIIIFVNTKKGADALA 534 (673)
T ss_pred ecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHhC---CCCCEEEEEechhhHHHHH
Confidence 9999999999999999999999999887 45567889999999989999999988764 4679999999999999999
Q ss_pred HHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc
Q psy9620 318 KSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT 397 (453)
Q Consensus 318 ~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~ 397 (453)
+.|.+.++.+..+||+.++++|+.++..|++|..+||||||+++||||||+|.+|||||+++++++|+|||||+||+|+.
T Consensus 535 k~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~ 614 (673)
T KOG0333|consen 535 KILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKS 614 (673)
T ss_pred HHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCCChHHHHHHHHHHH-hcCCCCChHHHHHHhhc
Q psy9620 398 GTSYTFFTQQNSRQAKDLIDVLT-ESNHPVDPKLSALASRS 437 (453)
Q Consensus 398 g~~~~~~~~~~~~~~~~l~~~l~-~~~~~v~~~l~~~~~~~ 437 (453)
|.+++|+++.|...+.+|...|. .....+|++|.....+.
T Consensus 615 GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~a~ 655 (673)
T KOG0333|consen 615 GTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPDAQ 655 (673)
T ss_pred ceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChhhc
Confidence 99999999999999999998766 56778898887776554
No 5
>KOG0339|consensus
Probab=100.00 E-value=7.2e-63 Score=461.46 Aligned_cols=372 Identities=40% Similarity=0.693 Sum_probs=346.0
Q ss_pred CcccccCC--CCCccccCCCCCCcccCCCCHHHHHHHHHHcCCeeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCH
Q psy9620 62 ALRAIDWG--NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTP 138 (453)
Q Consensus 62 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~ 138 (453)
.+..+++. +++||.++||.++.++..++..+...++....+.+.+. .|.|+.+|++.++++.|+.++.+..|.+|||
T Consensus 169 pl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptp 248 (731)
T KOG0339|consen 169 PLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTP 248 (731)
T ss_pred CCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCc
Confidence 45555555 78999999999999999999999999999999999988 8999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEE
Q psy9620 139 IQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRST 218 (453)
Q Consensus 139 ~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~ 218 (453)
+|.+++|..++|+|++.+|.||||||.+|+.|++.+++.++.+.++.+|..||+|||||||.|++.++++|++..+++++
T Consensus 249 iq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v 328 (731)
T KOG0339|consen 249 IQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVV 328 (731)
T ss_pred ccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCccCCCC------------------------------------------------------------CCceEEEEe
Q psy9620 219 CVYGGASKGPQ------------------------------------------------------------PDRQVLMWS 238 (453)
Q Consensus 219 ~~~gg~~~~~~------------------------------------------------------------~~~q~v~~S 238 (453)
++|||.++..| +++|+|+||
T Consensus 329 ~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFs 408 (731)
T KOG0339|consen 329 AVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFS 408 (731)
T ss_pred EeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEee
Confidence 99999998876 899999999
Q ss_pred ccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHH
Q psy9620 239 ATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKIT 317 (453)
Q Consensus 239 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~ 317 (453)
||++..++.+++.++.+++.+...... ..+..|.|.+.++...++ +|-++++++.. ...+++|||+..+..++.++
T Consensus 409 aTf~~kIe~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~--Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~ 485 (731)
T KOG0339|consen 409 ATFKKKIEKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEK--KLNWLLRHLVEFSSEGKVLIFVTKKADAEEIA 485 (731)
T ss_pred ccchHHHHHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHH--HHHHHHHHhhhhccCCcEEEEEeccCCHHHHH
Confidence 999999999999999999988877665 567889999999876433 33444444322 23579999999999999999
Q ss_pred HHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc
Q psy9620 318 KSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT 397 (453)
Q Consensus 318 ~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~ 397 (453)
..|...++++..+|++|.+.+|.+++.+|+.+++.||||||++++|+||+++..||+||+-.+++.|.||+||+||+|..
T Consensus 486 a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k 565 (731)
T KOG0339|consen 486 ANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK 565 (731)
T ss_pred HHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHhh
Q psy9620 398 GTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASR 436 (453)
Q Consensus 398 g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~~ 436 (453)
|.+|+++++.|.+++-.|++.|+.++|.||+.|.+|+..
T Consensus 566 GvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk 604 (731)
T KOG0339|consen 566 GVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMK 604 (731)
T ss_pred ceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhh
Confidence 999999999999999999999999999999999999843
No 6
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.5e-61 Score=491.14 Aligned_cols=372 Identities=31% Similarity=0.522 Sum_probs=329.7
Q ss_pred CcccccCCCCCccccCCCCCCcccCC-CCHHHHHHHHHHcCCeeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHH
Q psy9620 62 ALRAIDWGNLPPFEKNFFHPSPSVLN-RSPHEVQAFRDKHQMTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPI 139 (453)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~ 139 (453)
.+....|+.+++++++||...++... ++.+++..++....+.+.|. .|.|+.+|++++|++.+++.|.+.||..|||+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpi 147 (518)
T PLN00206 68 AVGAPKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPI 147 (518)
T ss_pred CcCCCchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHH
Confidence 34445566889999999998887754 88999999999999999888 99999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCC--CCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceE
Q psy9620 140 QAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQ--LKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRS 217 (453)
Q Consensus 140 Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~--~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~ 217 (453)
|.++||.+++|+|++++||||||||++|++|++.++..... .....++++|||+||+|||.|+.+.++.+....++++
T Consensus 148 Q~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~ 227 (518)
T PLN00206 148 QMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKT 227 (518)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceE
Confidence 99999999999999999999999999999999988764321 1223678999999999999999999999998888898
Q ss_pred EEEeCCccCCCC-----------------------------------------------------------CCceEEEEe
Q psy9620 218 TCVYGGASKGPQ-----------------------------------------------------------PDRQVLMWS 238 (453)
Q Consensus 218 ~~~~gg~~~~~~-----------------------------------------------------------~~~q~v~~S 238 (453)
.+++||.....+ +..|++++|
T Consensus 228 ~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~S 307 (518)
T PLN00206 228 ALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFS 307 (518)
T ss_pred EEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEE
Confidence 888888653321 567999999
Q ss_pred ccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHH
Q psy9620 239 ATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITK 318 (453)
Q Consensus 239 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~ 318 (453)
||++.+++.++..++.+++.+.+.... .....+.+.+..+....+...+.+++..... ...++||||+++..|+.+++
T Consensus 308 ATl~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~-~~~~~iVFv~s~~~a~~l~~ 385 (518)
T PLN00206 308 ATVSPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQH-FKPPAVVFVSSRLGADLLAN 385 (518)
T ss_pred eeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhcc-cCCCEEEEcCCchhHHHHHH
Confidence 999999999999999998888776544 3445677777777777777778887765422 24589999999999999999
Q ss_pred HHHh-cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc
Q psy9620 319 SIQN-YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT 397 (453)
Q Consensus 319 ~L~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~ 397 (453)
.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+|.++++|+||+|||||.|..
T Consensus 386 ~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~ 465 (518)
T PLN00206 386 AITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK 465 (518)
T ss_pred HHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC
Confidence 9975 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHh
Q psy9620 398 GTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALAS 435 (453)
Q Consensus 398 g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~ 435 (453)
|.+++|+++++...+.++++.|+..++.+|++|.++..
T Consensus 466 G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~~ 503 (518)
T PLN00206 466 GTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSRY 503 (518)
T ss_pred eEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhChh
Confidence 99999999999999999999999999999999998763
No 7
>KOG0330|consensus
Probab=100.00 E-value=3.6e-61 Score=437.63 Aligned_cols=311 Identities=34% Similarity=0.550 Sum_probs=287.0
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 109 p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
-....+|.++++.+.+++++++.+|..||++|+++||.++.|+|+|+.|+||||||.+|++|++++++++++ .+.
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~ 131 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFF 131 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----Cce
Confidence 345678999999999999999999999999999999999999999999999999999999999999998654 589
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------- 229 (453)
+|||+||||||.||.+.+..++...++++.++.||.+...+
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlD 211 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLD 211 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhc
Confidence 99999999999999999999999999999999999875433
Q ss_pred ----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhh
Q psy9620 230 ----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENK 287 (453)
Q Consensus 230 ----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~ 287 (453)
..+|+++||||++..+.++....+++++.+.+.... .....++|.+.+++...|...
T Consensus 212 EADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~y 290 (476)
T KOG0330|consen 212 EADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTY 290 (476)
T ss_pred hHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchh
Confidence 689999999999999999999999999988776654 445678888889999999999
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD 367 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip 367 (453)
|++++++. ....+||||++...++.++-.|...++.+..+||.|++..|.-.++.|++|.++||||||+++||+|||
T Consensus 291 LV~ll~e~---~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip 367 (476)
T KOG0330|consen 291 LVYLLNEL---AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIP 367 (476)
T ss_pred HHHHHHhh---cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCC
Confidence 99999975 357999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCC--CCh
Q psy9620 368 DVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHP--VDP 428 (453)
Q Consensus 368 ~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~--v~~ 428 (453)
.|++|||||+|.+..+|+||+||++|+|..|.++.|++.-|.+.+.++...+...... ++.
T Consensus 368 ~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 368 HVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred CceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 9999999999999999999999999999999999999999999888888777766544 555
No 8
>KOG0335|consensus
Probab=100.00 E-value=4.8e-60 Score=450.03 Aligned_cols=335 Identities=43% Similarity=0.713 Sum_probs=307.0
Q ss_pred eccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCC
Q psy9620 104 LKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLK 182 (453)
Q Consensus 104 ~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~ 182 (453)
..+. .|.++..|.+..+++.+..+++..+|..|||+|+.+||.+..|+|+++||+||||||.+|++|++.+++......
T Consensus 64 ~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~ 143 (482)
T KOG0335|consen 64 VSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPED 143 (482)
T ss_pred ccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCccc
Confidence 3455 899999999999999999999999999999999999999999999999999999999999999999998765422
Q ss_pred C-----CCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC----------------------------
Q psy9620 183 P-----GDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ---------------------------- 229 (453)
Q Consensus 183 ~-----~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---------------------------- 229 (453)
. ...|.+||++||||||.|++++.+++.....+++..+||+.+...+
T Consensus 144 ~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~ 223 (482)
T KOG0335|consen 144 RGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKIS 223 (482)
T ss_pred CcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceee
Confidence 1 1358999999999999999999999999999999999999665444
Q ss_pred -------------------------------------CCceEEEEeccCcHHHHHHHHHhhcc-ceEEEecccccccCcc
Q psy9620 230 -------------------------------------PDRQVLMWSATWPREVQKLAEDFLDS-YIQINIGSLTLSANHN 271 (453)
Q Consensus 230 -------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 271 (453)
..+|++|||||+|.++..++..++.+ ++.+.+.... ....+
T Consensus 224 l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg-~~~~n 302 (482)
T KOG0335|consen 224 LDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG-STSEN 302 (482)
T ss_pred hhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec-ccccc
Confidence 57899999999999999999999986 8888888877 67789
Q ss_pred ceeEEEEccccchhhhHHHHHHhhhcC-CC-----CcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Q psy9620 272 IQQVVEVCAEHEKENKLFGLLNDISSK-DE-----NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKE 345 (453)
Q Consensus 272 i~~~~~~~~~~~k~~~l~~ll~~~~~~-~~-----~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 345 (453)
+.|.+.++.+.+|...|+++|...... .. .+++|||++++.|+.|+.+|...++++..+|++.++.+|++.++.
T Consensus 303 i~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~ 382 (482)
T KOG0335|consen 303 ITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALND 382 (482)
T ss_pred ceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHH
Confidence 999999999999999999999865421 12 389999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCC
Q psy9620 346 FRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHP 425 (453)
Q Consensus 346 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (453)
|++|++.|||||++++||||||+|+|||+||+|.+..+|+||+||+||+|..|.++.|++..+....+.|+++|.+++++
T Consensus 383 Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~ 462 (482)
T KOG0335|consen 383 FRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQE 462 (482)
T ss_pred hhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhcCC
Q psy9620 426 VDPKLSALASRSGG 439 (453)
Q Consensus 426 v~~~l~~~~~~~~~ 439 (453)
||+||.+++.....
T Consensus 463 vP~wl~~~~~~~~~ 476 (482)
T KOG0335|consen 463 VPQWLSELSREREL 476 (482)
T ss_pred CcHHHHhhhhhccc
Confidence 99999997766443
No 9
>KOG0334|consensus
Probab=100.00 E-value=1.4e-60 Score=483.57 Aligned_cols=372 Identities=42% Similarity=0.737 Sum_probs=351.2
Q ss_pred CcccccCC--CCCccccCCCCCCcccCCCCHHHHHHHHHHcC-Ceeccc-CCCccccccccCCCHHHHHHHHHCCCCCCC
Q psy9620 62 ALRAIDWG--NLPPFEKNFFHPSPSVLNRSPHEVQAFRDKHQ-MTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPT 137 (453)
Q Consensus 62 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~ 137 (453)
.+-.++++ .+.||.++||.+...+..++..+++.++.... |.+.+. +|.|+.+|.+.++...++..++++||..|+
T Consensus 310 ~~~~~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~ 389 (997)
T KOG0334|consen 310 NLIQVDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPT 389 (997)
T ss_pred ceeecccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCc
Confidence 45556665 78999999999999999999999999999887 889888 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceE
Q psy9620 138 PIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRS 217 (453)
Q Consensus 138 ~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~ 217 (453)
|||.+|||+|++|+|+|.+|.||||||++|++|++.|+..++....+.||.+||++|||+||.||.+++++|....++++
T Consensus 390 ~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~ 469 (997)
T KOG0334|consen 390 PIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRV 469 (997)
T ss_pred chhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceE
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred EEEeCCccCCCC---------------------------------------------------------------CCceE
Q psy9620 218 TCVYGGASKGPQ---------------------------------------------------------------PDRQV 234 (453)
Q Consensus 218 ~~~~gg~~~~~~---------------------------------------------------------------~~~q~ 234 (453)
+|+||+.....+ +++|+
T Consensus 470 v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQt 549 (997)
T KOG0334|consen 470 VCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQT 549 (997)
T ss_pred EEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhh
Confidence 999999877655 78999
Q ss_pred EEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcc-ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHH
Q psy9620 235 LMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCA-EHEKENKLFGLLNDISSKDENKTIIFAETKRKV 313 (453)
Q Consensus 235 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~ 313 (453)
+++|||+|..+..++...++.|+.+.+.... .+...+.+.+.++. +.+|..+|+++|....+ ..++||||.+...|
T Consensus 550 vlfSatfpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e--~~~tiiFv~~qe~~ 626 (997)
T KOG0334|consen 550 VLFSATFPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGERYE--DGKTIIFVDKQEKA 626 (997)
T ss_pred hhhhhhhhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHHHhh--cCCEEEEEcCchHH
Confidence 9999999999999999999999998877544 67788999999998 88999999999988654 77999999999999
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccC
Q psy9620 314 DKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGR 393 (453)
Q Consensus 314 ~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR 393 (453)
+.+.+.|.+.++.+..+||+.++.+|..++++|+++.+++||||+++++|+|++++.+|||||+|...++|+||+|||||
T Consensus 627 d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgr 706 (997)
T KOG0334|consen 627 DALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGR 706 (997)
T ss_pred HHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHhh
Q psy9620 394 SDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASR 436 (453)
Q Consensus 394 ~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~~ 436 (453)
+|..|.|++|+++.+...+.+|++.|+...+++|..|..|...
T Consensus 707 agrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~ 749 (997)
T KOG0334|consen 707 AGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSER 749 (997)
T ss_pred CCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999998754
No 10
>KOG0341|consensus
Probab=100.00 E-value=7.4e-61 Score=434.74 Aligned_cols=355 Identities=38% Similarity=0.647 Sum_probs=311.4
Q ss_pred cCCCCCCcccCCCCHHHHHHHHHHcCCeeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEE
Q psy9620 76 KNFFHPSPSVLNRSPHEVQAFRDKHQMTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMV 154 (453)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l 154 (453)
+.+|.+.-.+..+|.++-+..+.+..|.++|. +|+|+.+|.++.+|..+++.|++.|+..|||+|.+.+|.+++|+|+|
T Consensus 132 ~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmI 211 (610)
T KOG0341|consen 132 KTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMI 211 (610)
T ss_pred hhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCcee
Confidence 34566666677788888888888899999999 99999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcchhhhhHHHHHHhhhcC---CCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC------CCCceEEEEeCCcc
Q psy9620 155 GVAQTGSGKTLAYMLPAIVHINHQS---QLKPGDGPIVLVLAPTRELAQQIQEVARDFGS------STYLRSTCVYGGAS 225 (453)
Q Consensus 155 i~a~TGsGKT~~~~l~~l~~~~~~~---~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~------~~~~~~~~~~gg~~ 225 (453)
.+|-||||||++|.+|++.....+. ....+.+|..||+||+||||.|+++.+..++. ...+++..+.||.+
T Consensus 212 GIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~ 291 (610)
T KOG0341|consen 212 GIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVP 291 (610)
T ss_pred eEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCcc
Confidence 9999999999999999987766543 34557899999999999999999988777642 33567778888877
Q ss_pred CCCC------------------------------------------------------------CCceEEEEeccCcHHH
Q psy9620 226 KGPQ------------------------------------------------------------PDRQVLMWSATWPREV 245 (453)
Q Consensus 226 ~~~~------------------------------------------------------------~~~q~v~~SAT~~~~~ 245 (453)
...+ ..+|+++||||+|..+
T Consensus 292 v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KI 371 (610)
T KOG0341|consen 292 VREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKI 371 (610)
T ss_pred HHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHH
Confidence 6655 6799999999999999
Q ss_pred HHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCC
Q psy9620 246 QKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW 325 (453)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~ 325 (453)
+.+++.-+..|+.++++.... .+.++.|.+.++....|...|++.|. +...++||||..+.+++.+.++|.-.|.
T Consensus 372 Q~FAkSALVKPvtvNVGRAGA-AsldViQevEyVkqEaKiVylLeCLQ----KT~PpVLIFaEkK~DVD~IhEYLLlKGV 446 (610)
T KOG0341|consen 372 QNFAKSALVKPVTVNVGRAGA-ASLDVIQEVEYVKQEAKIVYLLECLQ----KTSPPVLIFAEKKADVDDIHEYLLLKGV 446 (610)
T ss_pred HHHHHhhcccceEEecccccc-cchhHHHHHHHHHhhhhhhhHHHHhc----cCCCceEEEeccccChHHHHHHHHHccc
Confidence 999999999999999998874 44555566666655555444444333 3467999999999999999999999999
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEc
Q psy9620 326 AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFT 405 (453)
Q Consensus 326 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 405 (453)
.++.+||+.++++|...++.|+.|+.+||||||+++.|+|+|++.||||||+|..++.|+||+||+||.|++|.+.+|++
T Consensus 447 EavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfIN 526 (610)
T KOG0341|consen 447 EAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFIN 526 (610)
T ss_pred eeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-ChHHHHHHHHHHHhcCCCCChHHHHHHh
Q psy9620 406 QQ-NSRQAKDLIDVLTESNHPVDPKLSALAS 435 (453)
Q Consensus 406 ~~-~~~~~~~l~~~l~~~~~~v~~~l~~~~~ 435 (453)
.+ +...+-+|...|.++.|++|+.|.+++.
T Consensus 527 K~~~esvLlDLK~LL~EakQ~vP~~L~~L~~ 557 (610)
T KOG0341|consen 527 KNQEESVLLDLKHLLQEAKQEVPPVLAELAG 557 (610)
T ss_pred ccchHHHHHHHHHHHHHhhccCCHHHHHhCC
Confidence 85 4556777888899999999999999974
No 11
>KOG0328|consensus
Probab=100.00 E-value=4.4e-58 Score=400.67 Aligned_cols=317 Identities=32% Similarity=0.568 Sum_probs=289.4
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
...++.+|++++|.+.+++.+...||.+|+.+|+.|++.++.|+|++++|+.|+|||.+|.+.+|+.+.-.. ...
T Consensus 22 ~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~-----r~t 96 (400)
T KOG0328|consen 22 KVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV-----RET 96 (400)
T ss_pred CcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc-----cee
Confidence 456778999999999999999999999999999999999999999999999999999999999988765432 346
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------- 229 (453)
.+|||+||||||.|+.+.+..++...++.+..+.||.+....
T Consensus 97 Q~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLD 176 (400)
T KOG0328|consen 97 QALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLD 176 (400)
T ss_pred eEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEec
Confidence 799999999999999999999999999999999999885443
Q ss_pred ----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccc-hhh
Q psy9620 230 ----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHE-KEN 286 (453)
Q Consensus 230 ----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-k~~ 286 (453)
+..|++++|||+|.++.++.+.|+.+|+.+.+...+++. +.+++++..+..++ |.+
T Consensus 177 EaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltl-EgIKqf~v~ve~EewKfd 255 (400)
T KOG0328|consen 177 EADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTL-EGIKQFFVAVEKEEWKFD 255 (400)
T ss_pred cHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCch-hhhhhheeeechhhhhHh
Confidence 689999999999999999999999999999988877544 55778777776655 888
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
.|.++...+ .-.+++|||||+..++.|.+.|++..+.+..+||+|+++||+.++++|++|+.+||++||+.+||||+
T Consensus 256 tLcdLYd~L---tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv 332 (400)
T KOG0328|consen 256 TLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV 332 (400)
T ss_pred HHHHHhhhh---ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc
Confidence 888887765 24589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHH
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSAL 433 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~ 433 (453)
|.|++|||||+|.+.+.|+||+||+||.|.+|.++-|+..++.+.++++..++.-...++|-.+.++
T Consensus 333 ~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 333 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred ceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence 9999999999999999999999999999999999999999999999999999998888888776543
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-57 Score=453.72 Aligned_cols=313 Identities=40% Similarity=0.653 Sum_probs=276.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
..|+++++++.+++++.+.||..|||+|.++||.++.|+|++++|+||||||++|++|+++.+..... ....+ +||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~--~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE--RKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc--cCCCc-eEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999764311 11122 9999
Q ss_pred cCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
+||||||.|+++.+..++... ++++.+++||.+...+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999888 7999999999875543
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccccc-ccCccceeEEEEccccc-hhhhHH
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTL-SANHNIQQVVEVCAEHE-KENKLF 289 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~-k~~~l~ 289 (453)
.++|+++||||+|..+..+++.++.++..+.+..... .....+.|.+..+...+ |...|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 5699999999999999999999999998888773332 35678889988888765 777777
Q ss_pred HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 290 ~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
.++... ...++||||+|+..|+.|+..|...++.+..+||+|++.+|..+++.|++|+.+||||||+++||||||+|
T Consensus 266 ~ll~~~---~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 266 KLLKDE---DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDV 342 (513)
T ss_pred HHHhcC---CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccc
Confidence 777654 34479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCC-ChHHHHHHHHHHHhc---CCCCChHHH
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ-NSRQAKDLIDVLTES---NHPVDPKLS 431 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~---~~~v~~~l~ 431 (453)
++|||||+|.+.++|+||+||+||+|..|.+++|+++. +...++.+.+.+... ...+|....
T Consensus 343 ~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~ 408 (513)
T COG0513 343 SHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408 (513)
T ss_pred ceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchh
Confidence 99999999999999999999999999999999999986 888888888877654 234554433
No 13
>KOG0340|consensus
Probab=100.00 E-value=2.1e-56 Score=402.01 Aligned_cols=306 Identities=32% Similarity=0.501 Sum_probs=274.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
...|+.++|++|+.+.++++|+.+|||+|..+||.|+.|+|+|.+|.||||||.+|.+|+|+.+..++ .+-.+||
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFalv 80 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFALV 80 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999998765 5888999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
++||||||.|+.+.|..+++..++++.+++||.+.-.+
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 99999999999999999999999999999999765333
Q ss_pred ----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEec-ccccccCccceeEEEEccccchhh
Q psy9620 230 ----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG-SLTLSANHNIQQVVEVCAEHEKEN 286 (453)
Q Consensus 230 ----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~k~~ 286 (453)
..+|+++||||+...+..+...-....+..... ....+....+.+.+..++...+..
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 457999999999988877655443332111111 133456677888899999999999
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
.|..+|....+++.+.++||+++..+|+.|+..|....+.+..+|+-|+|.+|...+.+|+++..+||||||+++||+||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 99999999877667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
|.|.+|||||+|.++.+|+||+||++|+|..|.+++|+++.|.+.+..+.+.+...
T Consensus 321 P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999988888777655443
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.3e-54 Score=427.09 Aligned_cols=308 Identities=32% Similarity=0.501 Sum_probs=266.1
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCC--CCCCCcE
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQL--KPGDGPI 188 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~--~~~~~~~ 188 (453)
+-.+|++++|++.+++++.++||..|||+|+++||.+++|+|++++||||||||++|++|+++.+...+.. ....+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 33689999999999999999999999999999999999999999999999999999999999988764332 1124689
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------- 229 (453)
+|||+||+|||.|+++.+..+....++++..++|+.....+
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999999998889999999887642211
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhh
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKEN 286 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 286 (453)
..++.+++|||++..+..++..++.++..+.+.... .....+.+.+......++..
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHH
Confidence 246789999999999999998888888777665443 23345666665555556666
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
.+..++.. ....++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 245 ~l~~ll~~---~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 245 LLQTLIEE---EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHh---cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 66666543 245689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
|+|++|||||+|.+.++|+||+||+||.|+.|.|++|+++.+...+..+.+.+...
T Consensus 322 p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 322 PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999888888876666544
No 15
>KOG0338|consensus
Probab=100.00 E-value=3.2e-54 Score=403.93 Aligned_cols=301 Identities=32% Similarity=0.518 Sum_probs=270.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
.+|.+++|+-.|++++..+||..|||+|..+||..+-|+|++.||.||||||.+|++|+|.++...++. -...+||||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLVL 258 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLVL 258 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEEE
Confidence 589999999999999999999999999999999999999999999999999999999999999886653 245689999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
||||||+.|++...++++....|.++.+.||.+...|
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 9999999999999999999999999999999887655
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEc--cccchhhhHH
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVC--AEHEKENKLF 289 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~k~~~l~ 289 (453)
..+|+++||||++.++.+++..-+.+|+.+.+..........-+.++..- .+.++...+.
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~ 418 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLA 418 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHH
Confidence 68999999999999999999999999999999876644333333333322 2345666677
Q ss_pred HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 290 ~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
.++.... ...+|||+.|+++|..+.-.|--.|+.+.-+||.++|.+|...++.|++.+++||||||+++|||||+.|
T Consensus 419 ~l~~rtf---~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 419 SLITRTF---QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHhc---ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 7776543 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHH
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDV 418 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 418 (453)
..||||++|.+++.|+||+||++|+|..|.+++|+.+.+...++.++..
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999988888865
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.3e-53 Score=430.06 Aligned_cols=307 Identities=36% Similarity=0.585 Sum_probs=265.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCC--CCCCCcEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQL--KPGDGPIV 189 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~--~~~~~~~v 189 (453)
..+|++++|++.|++.|.++||..|||+|+++||.+++|+|++++||||||||++|++|++.++...... .....+++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3479999999999999999999999999999999999999999999999999999999999988654321 11236899
Q ss_pred EEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC----------------------------------------
Q psy9620 190 LVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ---------------------------------------- 229 (453)
Q Consensus 190 lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---------------------------------------- 229 (453)
|||+||+|||.|+++.+.+++...++++..++|+.....+
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 9999999999999999999998889999999988653211
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhh
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKEN 286 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 286 (453)
..+|+++||||++..+..++..++.++..+.+.... .....+.+.+......++..
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHH
Confidence 268999999999999999999988887666554433 23345666666666666666
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
.+..++.. ....++||||+++..|+.|++.|...++.+..+|++|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 247 ~L~~ll~~---~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDi 323 (572)
T PRK04537 247 LLLGLLSR---SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHI 323 (572)
T ss_pred HHHHHHhc---ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCc
Confidence 56555543 346699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
|+|++|||||+|.+.++|+||+||+||.|..|.|++|+++.+...++++.+.+...
T Consensus 324 p~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 324 DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred cCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999998888888877766543
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=8.3e-53 Score=422.21 Aligned_cols=305 Identities=34% Similarity=0.609 Sum_probs=264.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCC-CCCCcEEEEE
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLK-PGDGPIVLVL 192 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vlil 192 (453)
+|++++|++.+++.|.++||..||++|.++||.+++++|+|++||||||||++|++|+++.+....... ....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999886543221 1234689999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
+||++||.|+.+.+..+....++++..++|+.+...+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 9999999999999999988888888888888653211
Q ss_pred -----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHH
Q psy9620 230 -----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLL 292 (453)
Q Consensus 230 -----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 292 (453)
..+|++++|||++.++..++..++.++..+.+.... .....+.+.+..+....+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHH
Confidence 457999999999999999999999888777665433 33455666776666655555444444
Q ss_pred HhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEE
Q psy9620 293 NDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFV 372 (453)
Q Consensus 293 ~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V 372 (453)
.. ....++||||+++..|+.+++.|...++.+..+|++|++.+|..+++.|++|+++|||||+++++|||+|+|++|
T Consensus 241 ~~---~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 241 GK---GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred Hc---CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 32 345689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 373 INFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 373 I~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
||||+|.+.++|+||+||+||+|..|.|++|++..+...++.+.+.+...
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999988888887776644
No 18
>KOG0326|consensus
Probab=100.00 E-value=1.9e-54 Score=383.88 Aligned_cols=309 Identities=31% Similarity=0.557 Sum_probs=285.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
..|++..|...|+..+.+.||..|+|+|.++||+++.|+|+++-|..|+|||.+|++|+|..+.... ....++|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~-----~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK-----NVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc-----cceeEEEE
Confidence 4789999999999999999999999999999999999999999999999999999999999886543 46679999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
+||||||.|+...++++++..++++.+..||++....
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL 239 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh
Confidence 9999999999999999999999999999999887655
Q ss_pred -----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHH
Q psy9620 230 -----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLL 292 (453)
Q Consensus 230 -----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 292 (453)
..+|++++|||+|-.+..+...++.+|..+..... -....+.|++.++.+..|...|..+.
T Consensus 240 Ls~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 240 LSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred hchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHHH
Confidence 68999999999999999999999999998876543 33467889999999999988888887
Q ss_pred HhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEE
Q psy9620 293 NDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFV 372 (453)
Q Consensus 293 ~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V 372 (453)
..+ .-...||||||...++.||..+.+.|+.+.++|+.|-++.|..++.+|++|.++.|||||.+.||||+++|++|
T Consensus 318 skL---qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 318 SKL---QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHh---cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 766 34588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHH
Q psy9620 373 INFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLS 431 (453)
Q Consensus 373 I~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~ 431 (453)
||||+|++.++|+||+||+||.|..|.++.+++.+|...+.++.+.|-....++|+.++
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 99999999999999999999999999999999999999999998888888888886554
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.3e-52 Score=418.79 Aligned_cols=299 Identities=32% Similarity=0.542 Sum_probs=263.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
.+|++++|++.+++++.++||..|||+|+++||.+++++|++++||||||||++|++|++.++.... ..+++|||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-----~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-----FRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-----CCceEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999875432 35679999
Q ss_pred cCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
+||+|||.|+.+.++.++... ++++..++|+.+...+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999987644 6888888888654211
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHH
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGL 291 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 291 (453)
..+|++++|||+++.+..++..++.++..+.+.... ....+.+.+..+...++...+..+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~l 236 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRL 236 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHH
Confidence 568999999999999999999999998877765543 234477777767666677777776
Q ss_pred HHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcE
Q psy9620 292 LNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKF 371 (453)
Q Consensus 292 l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~ 371 (453)
+... ...++||||+++..|+.+++.|...++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|||+|++++
T Consensus 237 l~~~---~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 237 LLHH---QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHhc---CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 6543 4568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHh
Q psy9620 372 VINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTE 421 (453)
Q Consensus 372 VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 421 (453)
||+||+|.+.++|+||+||+||+|..|.|++|+++.+...++.+.+.+..
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999988887777766554
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.8e-52 Score=425.15 Aligned_cols=300 Identities=34% Similarity=0.601 Sum_probs=260.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
..+|++++|++.++++|.++||.+|+|+|+++||.+++++|+|++||||||||++|++|++..+.... ..+++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~-----~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL-----KAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc-----CCCeEEE
Confidence 35699999999999999999999999999999999999999999999999999999999998875432 4678999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC-----------------------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ----------------------------------------- 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~----------------------------------------- 229 (453)
|+||++||.|+++.+..+.... ++.+..++|+.+...+
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999886554 6888888888653211
Q ss_pred -------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHH
Q psy9620 230 -------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFG 290 (453)
Q Consensus 230 -------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 290 (453)
...|+++||||+|..+..+++.++.++..+.+.... .....+.+.+..+....|...|..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHH
Confidence 468999999999999999999999998877665543 233456666666665566666666
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
++.. ....++||||+|+..++.|++.|...++.+..+|++|++.+|+.++++|++|+++|||||+++++|||+|+|+
T Consensus 239 ~L~~---~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 239 FLEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHHh---cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 6654 3456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHH
Q psy9620 371 FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 371 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
+|||||+|.+.++|+||+|||||+|+.|.|++|+++.+...++.+.+.++
T Consensus 316 ~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 316 LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred EEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999887777766655543
No 21
>KOG0342|consensus
Probab=100.00 E-value=3.3e-52 Score=390.05 Aligned_cols=304 Identities=32% Similarity=0.492 Sum_probs=268.2
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
+...|++..|++..+++++++||..+|++|+.+++.++.|+|+++.|.||+|||++|++|+++.+...+.. +.++..||
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~-~r~~~~vl 158 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK-PRNGTGVL 158 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccC-CCCCeeEE
Confidence 34578899999999999999999999999999999999999999999999999999999999998876543 33778899
Q ss_pred EEcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC----------------------------------------
Q psy9620 191 VLAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ---------------------------------------- 229 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~---------------------------------------- 229 (453)
|||||||||.|++.+++++.... .+.+..+.||......
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999998777 8889999998765432
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhcc-ceEEEeccccc-ccCccceeEEEEccccchhh
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDS-YIQINIGSLTL-SANHNIQQVVEVCAEHEKEN 286 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~i~~~~~~~~~~~k~~ 286 (453)
..+|+++||||.++++++++...+.. ++.+.+..... ...+.+.|-+.+++...+..
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 67899999999999999999887764 77776554432 33455677777777766667
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
.+..+|+.... ..++||||+|...+..+++.|....++|..+||.++|..|..+..+|+..+.-||||||+++||+|+
T Consensus 319 ll~~~LKk~~~--~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~ 396 (543)
T KOG0342|consen 319 LLYTFLKKNIK--RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDI 396 (543)
T ss_pred HHHHHHHHhcC--CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCC
Confidence 77777776432 3799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
|+|++||+||+|.+.++|+||+||+||.|+.|.+++|+.+.+..+++.|.+
T Consensus 397 P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 397 PDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred CCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999888877764
No 22
>KOG0343|consensus
Probab=100.00 E-value=1.2e-51 Score=389.82 Aligned_cols=303 Identities=32% Similarity=0.501 Sum_probs=276.1
Q ss_pred CccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEE
Q psy9620 110 NPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIV 189 (453)
Q Consensus 110 ~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 189 (453)
..+..|++++|+...++.|++.+|..+|.+|+++||..+.|+|+|..|.||||||++|++|+|+++... ++.+..|--|
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~-kWs~~DGlGa 144 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL-KWSPTDGLGA 144 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc-CCCCCCCcee
Confidence 345689999999999999999999999999999999999999999999999999999999999998764 4566678889
Q ss_pred EEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC----------------------------------------
Q psy9620 190 LVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ---------------------------------------- 229 (453)
Q Consensus 190 lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---------------------------------------- 229 (453)
|||+||||||.|+++.+.+.+....+.+..+.||......
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA 224 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA 224 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH
Confidence 9999999999999999999999999999999999764432
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccc-cccCccceeEEEEccccchhhhH
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLT-LSANHNIQQVVEVCAEHEKENKL 288 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~k~~~l 288 (453)
..+|+++||||-...+.++++.-+.+|..+.+.... ...+.++.|.+..++..+|.+.|
T Consensus 225 DR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L 304 (758)
T KOG0343|consen 225 DRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDML 304 (758)
T ss_pred HHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHH
Confidence 679999999999999999999999999988887433 56778899999999999999988
Q ss_pred HHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 289 ~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
..++.. +.+.++|||+.|++++..+++.++.. |+++..+||.|+|..|..++++|-..+.-||+|||+++||||+
T Consensus 305 ~sFI~s---hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF 381 (758)
T KOG0343|consen 305 WSFIKS---HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF 381 (758)
T ss_pred HHHHHh---ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC
Confidence 888775 45679999999999999999999975 8899999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCCh-HHHHHHH
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS-RQAKDLI 416 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~-~~~~~l~ 416 (453)
|.|++||++|.|.++++|+||+||++|....|.|++++++.+. .++..|.
T Consensus 382 paVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 382 PAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred cccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999884 4444433
No 23
>KOG0345|consensus
Probab=100.00 E-value=4.1e-51 Score=380.15 Aligned_cols=296 Identities=33% Similarity=0.525 Sum_probs=259.4
Q ss_pred ccccccC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 113 TEFAEAN--FPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 113 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
..|++++ |.++|++++.+.||..+||+|..+||.++.++|+++.|+||||||+||++|++..+.......+....-+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3566664 55999999999999999999999999999999999999999999999999999998554333222345799
Q ss_pred EEcCCHHHHHHHHHHHHHhcCC-CCceEEEEeCCccCCCC----------------------------------------
Q psy9620 191 VLAPTRELAQQIQEVARDFGSS-TYLRSTCVYGGASKGPQ---------------------------------------- 229 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~---------------------------------------- 229 (453)
||+||||||.||.+.+..|... ..+.+.++.||.+....
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988765 67889999999665443
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccc-cCccceeEEEEccccchh
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLS-ANHNIQQVVEVCAEHEKE 285 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~k~ 285 (453)
..+.+=+||||...++.++....+.|++.+.+...... .+..+...+..+...+|.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 56788899999999999999999999999988776532 344567778888888898
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARG 363 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 363 (453)
..++++|.. ....++|||++|...++..+..|... ...+..+||.|.+..|..+++.|+.-...+|+|||+++||
T Consensus 244 ~~lv~~L~~---~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 244 SQLVHLLNN---NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHhc---cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 888888876 35679999999999999999998765 6788999999999999999999999889999999999999
Q ss_pred CCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHH
Q psy9620 364 LDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQ 411 (453)
Q Consensus 364 iDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~ 411 (453)
||||+|++||+||+|.+...|+||+|||+|+|..|.+++|+.+++..+
T Consensus 321 lDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred CCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHH
Confidence 999999999999999999999999999999999999999999965443
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.1e-50 Score=404.01 Aligned_cols=304 Identities=33% Similarity=0.566 Sum_probs=259.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
+|++++|++.+++.++++||..|+++|.++|+.+++++|++++||||+|||++|++|++.++...+.. ....+++|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR-KSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCceEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999988754321 22357899999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------------
Q psy9620 194 PTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------------- 229 (453)
Q Consensus 194 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------- 229 (453)
||++||.|+.+.+..++...++++..++|+.....+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 999999999999999998888999999887643211
Q ss_pred ----------------CCceEEEEeccCcH-HHHHHHHHhhccceEEEecccccccCccceeEEEEccc-cchhhhHHHH
Q psy9620 230 ----------------PDRQVLMWSATWPR-EVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGL 291 (453)
Q Consensus 230 ----------------~~~q~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~l 291 (453)
...|+++||||++. .+..+...++.+++.+...... .....+.+.+..... ..+...+..+
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHH
Confidence 34789999999985 4778888888888877665433 333456665555443 3344444444
Q ss_pred HHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcE
Q psy9620 292 LNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKF 371 (453)
Q Consensus 292 l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~ 371 (453)
+.. ....++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++
T Consensus 240 ~~~---~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 240 LKQ---PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred Hhc---CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCE
Confidence 432 24579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 372 VINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 372 VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
|||||+|.+.+.|+||+||+||+|..|.+++|++..+...+..+.+++...
T Consensus 317 VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 317 VINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred EEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988888887766543
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4e-50 Score=405.51 Aligned_cols=318 Identities=32% Similarity=0.493 Sum_probs=270.9
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCC--CCCCcE
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLK--PGDGPI 188 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~ 188 (453)
....|.+++|++.+.+.|.++||..|+++|.++|+.+++|+|+|+++|||||||++|++|++..+...+... ....++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 346789999999999999999999999999999999999999999999999999999999999887653211 112578
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------- 229 (453)
+|||+||++||.|+.+.++.+....++++..++|+.+...+
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 99999999999999999999988888999998887543211
Q ss_pred ------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchh
Q psy9620 230 ------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE 285 (453)
Q Consensus 230 ------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~ 285 (453)
..+|++++|||++.++..++..++.++..+.+.... .....+.+.+..+...++.
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhHH
Confidence 257999999999999999999999888777665443 2334556666666666666
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLD 365 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiD 365 (453)
..+..++.. ....++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||
T Consensus 324 ~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GID 400 (475)
T PRK01297 324 KLLYNLVTQ---NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIH 400 (475)
T ss_pred HHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCc
Confidence 666665543 23468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcC--CCCChHHHH
Q psy9620 366 VDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESN--HPVDPKLSA 432 (453)
Q Consensus 366 ip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~--~~v~~~l~~ 432 (453)
||++++||+||+|.+..+|+||+||+||.|.+|.+++|++++|...+..+.+++.... ...+.+|..
T Consensus 401 i~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 401 IDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred ccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 9999999999999999999999999999999999999999998888888887776553 334445544
No 26
>KOG0344|consensus
Probab=100.00 E-value=3.6e-50 Score=384.86 Aligned_cols=337 Identities=33% Similarity=0.545 Sum_probs=288.3
Q ss_pred HHHHHcCCeeccc-CCCcccccccc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhH
Q psy9620 95 AFRDKHQMTLKGN-APNPITEFAEA----NFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 95 ~~~~~~~~~~~~~-~p~p~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l 169 (453)
..+..+.+.+.|. .|+|+.+|+++ ...+.+++++.+.+|..|+|+|.+|+|.+++++|+++|||||+|||++|.+
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 3455567788888 79999999984 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc--CCCCceEEEEeCCccCCCC------------------
Q psy9620 170 PAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG--SSTYLRSTCVYGGASKGPQ------------------ 229 (453)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~--~~~~~~~~~~~gg~~~~~~------------------ 229 (453)
|++.++..........+-+++|+.||++||.|++.++.++. .....++............
T Consensus 193 Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~r 272 (593)
T KOG0344|consen 193 PILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMR 272 (593)
T ss_pred HHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHH
Confidence 99999987664444567899999999999999999999998 4444443332222111000
Q ss_pred -----------------------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEec
Q psy9620 230 -----------------------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 230 -----------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
++..+-+||||++..++++++....+.+.+.++
T Consensus 273 i~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg 352 (593)
T KOG0344|consen 273 IVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVG 352 (593)
T ss_pred HHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEe
Confidence 566778999999999999999999999988887
Q ss_pred ccccccCccceeEEEEcc-ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHH-HhcCCeEEEEcCCCCHHHHH
Q psy9620 263 SLTLSANHNIQQVVEVCA-EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI-QNYGWAAVGIHGDKSQQERD 340 (453)
Q Consensus 263 ~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L-~~~~~~~~~~h~~~~~~~r~ 340 (453)
... +....+.|...++- +..|.-.+.+++. ..-..++|||+.+.+.|.+|...| .-.++++.++||..++.+|+
T Consensus 353 ~~~-sa~~~V~QelvF~gse~~K~lA~rq~v~---~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrd 428 (593)
T KOG0344|consen 353 LRN-SANETVDQELVFCGSEKGKLLALRQLVA---SGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRD 428 (593)
T ss_pred cch-hHhhhhhhhheeeecchhHHHHHHHHHh---ccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHH
Confidence 765 34556666655554 3344444444444 345679999999999999999999 66789999999999999999
Q ss_pred HHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHH
Q psy9620 341 YVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 341 ~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
.++++|+.|++.|||||++++||||+.+|+.|||||+|.+...|+||+||+||+|+.|.+|+||++.+....+.+.+.++
T Consensus 429 e~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 429 ETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred HHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCChHHHHHHh
Q psy9620 421 ESNHPVDPKLSALAS 435 (453)
Q Consensus 421 ~~~~~v~~~l~~~~~ 435 (453)
..+.+||+++..|..
T Consensus 509 ~sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 509 QSGCEVPEKIMGIKK 523 (593)
T ss_pred HcCCcchHHHHhhhh
Confidence 999999999999875
No 27
>KOG0348|consensus
Probab=100.00 E-value=5.4e-50 Score=377.56 Aligned_cols=310 Identities=30% Similarity=0.464 Sum_probs=261.3
Q ss_pred CCCccccccccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhc-CCCCCCC
Q psy9620 108 APNPITEFAEANFPDYVLKEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQ-SQLKPGD 185 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~-~~~~~~~ 185 (453)
.|-.-..|..++|++.+.+.|+. +++..||.+|+++||.+++|+|++|.++||||||++|++|+++.+... ++..+.+
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 34444679999999999999985 599999999999999999999999999999999999999999998764 4556678
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC-----------------------------------
Q psy9620 186 GPIVLVLAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ----------------------------------- 229 (453)
Q Consensus 186 ~~~vlil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~----------------------------------- 229 (453)
|+.+|||+||||||.|+++.+.++.+.. .|-...+.||..+...
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 9999999999999999999999997654 4455667777765543
Q ss_pred ---------------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccc-----
Q psy9620 230 ---------------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLT----- 265 (453)
Q Consensus 230 ---------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----- 265 (453)
+..|.+++|||+...+..++..-++|++.+..+...
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p 370 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNP 370 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCc
Confidence 247899999999999999999999999887722211
Q ss_pred -------------------cccCccceeEEEEccccchhhhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhc--
Q psy9620 266 -------------------LSANHNIQQVVEVCAEHEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY-- 323 (453)
Q Consensus 266 -------------------~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~-- 323 (453)
...+..+.|.+.+++.......|..+|..... ....++|||+.+.+.++.-+..|...
T Consensus 371 ~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 371 KDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred chhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 12234456667777777777777777765533 34558999999999999988887642
Q ss_pred --------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhH
Q psy9620 324 --------------------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSED 383 (453)
Q Consensus 324 --------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~ 383 (453)
+..+..+||+|+|++|..++..|...+..||+|||+++||||+|+|.+||+||.|.+.++
T Consensus 451 ~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ad 530 (708)
T KOG0348|consen 451 SHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTAD 530 (708)
T ss_pred cccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHH
Confidence 345778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 384 YIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 384 y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
|+||+||++|+|..|.+++|+.+.+.+++..+..
T Consensus 531 ylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 531 YLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred HHHHhhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 9999999999999999999999999886665544
No 28
>KOG0346|consensus
Probab=100.00 E-value=2.7e-50 Score=371.60 Aligned_cols=307 Identities=29% Similarity=0.491 Sum_probs=266.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCC-CCCCCcEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQL-KPGDGPIVLV 191 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~vli 191 (453)
.+|++++|++.|++++.+.||..||-+|+.|||.+++|+|+++.|.||||||.+|++|+++.+...... ....+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 589999999999999999999999999999999999999999999999999999999999999887655 3456899999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCC--CceEEEEeCCccCCCC----------------------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSST--YLRSTCVYGGASKGPQ---------------------------------------- 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~--~~~~~~~~gg~~~~~~---------------------------------------- 229 (453)
|+||+|||+|++..+.++.... .+++.-+....+....
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999888763211 2232222221111100
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhH
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKL 288 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 288 (453)
+..|.++||||+..++..+-+.++.+|+.+.....+......+.|++..|.+.+|...+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 67899999999999999999999999999999888888888999999999998888887
Q ss_pred HHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc---------
Q psy9620 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV--------- 359 (453)
Q Consensus 289 ~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~--------- 359 (453)
..+++.- --.+++|||+||.+.|.+|.-+|...|+...++++.|+..-|..++++|..|-.+||||||.
T Consensus 259 yallKL~--LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 259 YALLKLR--LIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHH--HhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 7777642 23679999999999999999999999999999999999999999999999999999999991
Q ss_pred --------------------------CccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHH
Q psy9620 360 --------------------------AARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAK 413 (453)
Q Consensus 360 --------------------------~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~ 413 (453)
++||||+.+|..|||||+|.+...|+||+||++|++++|.+++|+.+.+..-..
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKE 416 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhh
Confidence 579999999999999999999999999999999999999999999998766444
Q ss_pred HHHHHHHh
Q psy9620 414 DLIDVLTE 421 (453)
Q Consensus 414 ~l~~~l~~ 421 (453)
.+..+++.
T Consensus 417 ~le~~~~d 424 (569)
T KOG0346|consen 417 SLESILKD 424 (569)
T ss_pred HHHHHHhh
Confidence 44445444
No 29
>KOG0332|consensus
Probab=100.00 E-value=4.3e-49 Score=356.82 Aligned_cols=316 Identities=28% Similarity=0.468 Sum_probs=270.6
Q ss_pred CccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc--CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 110 NPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMS--GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 110 ~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
..+.+|+++.|.|++++.+..++|.+|+.+|..|+|.++. -+++|.+++.|+|||.||.+.+|.++.... ..|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~-----~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV-----VVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc-----cCC
Confidence 3568999999999999999999999999999999999996 489999999999999999999999876543 467
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCC--C----C--------------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKG--P----Q-------------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~--~----~-------------------------------- 229 (453)
.+++|+||||||.|+.+.+.+.++..++.+..+.-+.... . +
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEA 241 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEA 241 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecch
Confidence 8999999999999999999999988877766655443111 0 0
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc-cchhhh
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENK 287 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~ 287 (453)
.+.|+++||||+...+..++..+..++..+.+...++.. .+|+|++..|.. .+|.+.
T Consensus 242 D~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L-~~IkQlyv~C~~~~~K~~~ 320 (477)
T KOG0332|consen 242 DVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELAL-DNIKQLYVLCACRDDKYQA 320 (477)
T ss_pred hhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccc-cchhhheeeccchhhHHHH
Confidence 489999999999999999999999999888888877544 678888888864 456666
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD 367 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip 367 (453)
|.++...+ .-+..||||.|++.|..|+..|...|+.|..+||+|...+|..++++|+.|..+|||+|++++||||++
T Consensus 321 l~~lyg~~---tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~ 397 (477)
T KOG0332|consen 321 LVNLYGLL---TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVA 397 (477)
T ss_pred HHHHHhhh---hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccc
Confidence 66654433 356899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCC------ChhHHHHhhhcccCCCCcceEEEEEcCCC-hHHHHHHHHHHHhc-CCCCChHHHHHH
Q psy9620 368 DVKFVINFDYPN------NSEDYIHRIGRTGRSDNTGTSYTFFTQQN-SRQAKDLIDVLTES-NHPVDPKLSALA 434 (453)
Q Consensus 368 ~v~~VI~~d~p~------s~~~y~qr~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~-~~~v~~~l~~~~ 434 (453)
.|++|||||+|. +.+.|+||+||+||.|+.|.++.|++..+ .+.+..+.++++.. ..-.|+.++++.
T Consensus 398 qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~e 472 (477)
T KOG0332|consen 398 QVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDELE 472 (477)
T ss_pred eEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHHH
Confidence 999999999994 68899999999999999999999998754 56677788877543 444555555553
No 30
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.2e-48 Score=386.56 Aligned_cols=308 Identities=33% Similarity=0.556 Sum_probs=257.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
..+|+++++++.+.+++.+.||..|+|+|.++|+.+++++|++++||||||||++|++|++..+... ..++++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999877532 14678999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC---------C---------------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP---------Q--------------------------------- 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---------~--------------------------------- 229 (453)
|+||++|+.|+.+.+..++....+.+..+.|+..... .
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 9999999999999999988777677666666542110 0
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc-cchhhhHHH
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFG 290 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ 290 (453)
+..|++++|||+|.++..+...++.++..+.+..... ....+.+.+..... ..+...+..
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL-TLEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc-ccCCceEEEEecChHHHHHHHHHH
Confidence 5679999999999999988888888876665544332 22344444444432 223333444
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
++.. ....++||||+++..++.+++.|...++.+..+|++|++.+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 261 ~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~ 337 (401)
T PTZ00424 261 LYET---LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS 337 (401)
T ss_pred HHHh---cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC
Confidence 4332 2356899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCCh
Q psy9620 371 FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDP 428 (453)
Q Consensus 371 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~ 428 (453)
+||++|+|.+..+|+||+||+||.|..|.|++|+++++...++.+.+.+....++.+.
T Consensus 338 ~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 338 LVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred EEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 9999999999999999999999999999999999999988888887777665555543
No 31
>KOG0347|consensus
Probab=100.00 E-value=6.3e-50 Score=378.19 Aligned_cols=311 Identities=31% Similarity=0.489 Sum_probs=258.5
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEEecCCCcchhhhhHHHHHHhhhcCCC-----
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG-SNMVGVAQTGSGKTLAYMLPAIVHINHQSQL----- 181 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~----- 181 (453)
-+..+..|.++.||..++++|.++||..||++|+.++|.+..| .|+|..|.||||||++|-||+++.+.+....
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3456678999999999999999999999999999999999988 7999999999999999999999855432211
Q ss_pred ---CCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-----------------------------
Q psy9620 182 ---KPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ----------------------------- 229 (453)
Q Consensus 182 ---~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------------------- 229 (453)
.....|.+||++||||||.|+.+.+..++...++++..++||.....|
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 112345699999999999999999999999999999999999765443
Q ss_pred ---------------------------------------CCceEEEEeccCcHHHH---------------------HHH
Q psy9620 230 ---------------------------------------PDRQVLMWSATWPREVQ---------------------KLA 249 (453)
Q Consensus 230 ---------------------------------------~~~q~v~~SAT~~~~~~---------------------~~~ 249 (453)
..+|++.||||+.-... .+.
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 67899999999862211 111
Q ss_pred HHh--hccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeE
Q psy9620 250 EDF--LDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAA 327 (453)
Q Consensus 250 ~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~ 327 (453)
+.. ..++..+.+.+.. .....+......|+..+|...|..+|..+ .+++|||||+++.+.+|+-+|...+++.
T Consensus 416 k~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~ry----PGrTlVF~NsId~vKRLt~~L~~L~i~p 490 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTRY----PGRTLVFCNSIDCVKRLTVLLNNLDIPP 490 (731)
T ss_pred HHhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEeec----CCceEEEechHHHHHHHHHHHhhcCCCC
Confidence 111 1233333333322 23344444455566666666666665443 6899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCC
Q psy9620 328 VGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 328 ~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 407 (453)
..+|+.|.|.+|...+++|++....||||||+++||||||.|.|||||-.|.+.+.|+||.||++|++..|..++|+.+.
T Consensus 491 ~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~ 570 (731)
T KOG0347|consen 491 LPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQ 570 (731)
T ss_pred chhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q psy9620 408 NSRQAKDLIDVLTESN 423 (453)
Q Consensus 408 ~~~~~~~l~~~l~~~~ 423 (453)
+...+++|+.-|+...
T Consensus 571 e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 571 EVGPLKKLCKTLKKKE 586 (731)
T ss_pred HhHHHHHHHHHHhhcc
Confidence 9999999998887654
No 32
>KOG0327|consensus
Probab=100.00 E-value=1.8e-47 Score=349.19 Aligned_cols=311 Identities=33% Similarity=0.590 Sum_probs=282.2
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
+.+|++++|++.|++.+...||.+|+.+|+.||..+..|.|+++++++|+|||.+|.+++++.+.-. .....||+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-----~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-----VKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc-----hHHHHHHH
Confidence 3589999999999999999999999999999999999999999999999999999999999987432 23556999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
++|||+||.|+.+....++...+.++..+.|+.....+
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 99999999999999999999999999888887665422
Q ss_pred -------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHH
Q psy9620 230 -------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFG 290 (453)
Q Consensus 230 -------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 290 (453)
.+.|++++|||.|.++..+.+.++.+++.+.+...+++ ...++|++..+...+|...|..
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHHH
Confidence 67899999999999999999999999999998887755 4667788877777777777777
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
+.+ .....+||||+++.++.+...|...++.+..+|++|.+.+|+.+++.|+.|..+|||.|+.++||||+..+.
T Consensus 259 l~~-----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~s 333 (397)
T KOG0327|consen 259 LYR-----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVS 333 (397)
T ss_pred HHH-----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcc
Confidence 766 245789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHH
Q psy9620 371 FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSAL 433 (453)
Q Consensus 371 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~ 433 (453)
.||+||+|...++|+||+||+||.|.+|.++.|+++.+.+.++++.+++.-.-+++|....++
T Consensus 334 lvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l 396 (397)
T KOG0327|consen 334 LVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADL 396 (397)
T ss_pred eeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhc
Confidence 999999999999999999999999999999999999999999999999888888888766543
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4e-45 Score=382.24 Aligned_cols=290 Identities=18% Similarity=0.245 Sum_probs=226.3
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 119 NFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 119 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
.+++.+.+.|++.||.+|+++|+++|+.+++|+|+++++|||||||++|++|++..+... .++++|||+||+||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 488999999999999999999999999999999999999999999999999999988653 35789999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------------
Q psy9620 199 AQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------------- 229 (453)
Q Consensus 199 a~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------------- 229 (453)
|.|+.+.+++++ ..++++..+.|+.+...+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~ 172 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV 172 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc
Confidence 999999999987 446777777776542110
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc--------
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-------- 281 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------- 281 (453)
.++|++++|||++...+ +++.++..++.+ +...... ....+...+...
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~--~~~~~~~~~~p~~~~~~~~~ 248 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSP--RGARTVALWEPPLTELTGEN 248 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCC--cCceEEEEecCCcccccccc
Confidence 34799999999987654 566777666543 2221111 111122111111
Q ss_pred -----cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc--------CCeEEEEcCCCCHHHHHHHHHHHhc
Q psy9620 282 -----HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY--------GWAAVGIHGDKSQQERDYVLKEFRN 348 (453)
Q Consensus 282 -----~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~r~~~~~~f~~ 348 (453)
.........++..+.. ...++||||+|++.|+.++..|... +..+..+|+++++++|..++++|++
T Consensus 249 ~~~~r~~~~~~~~~~l~~l~~-~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~ 327 (742)
T TIGR03817 249 GAPVRRSASAEAADLLADLVA-EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD 327 (742)
T ss_pred ccccccchHHHHHHHHHHHHH-CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc
Confidence 0001122233333322 2569999999999999999998763 5678899999999999999999999
Q ss_pred CCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCC--ChHHHHHHHHHHH
Q psy9620 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ--NSRQAKDLIDVLT 420 (453)
Q Consensus 349 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~--~~~~~~~l~~~l~ 420 (453)
|++++||||+++++||||+++++||+||+|.+.++|+||+|||||.|+.|.++++.+++ |...+....++++
T Consensus 328 G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 328 GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998743 3333443333443
No 34
>KOG0337|consensus
Probab=100.00 E-value=1.3e-44 Score=332.54 Aligned_cols=303 Identities=33% Similarity=0.547 Sum_probs=276.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
.-.|..++|+..+++++.+.||..|||+|++++|.+++++|++..+.||||||.||++|+++++.... ..+.++|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 45799999999999999999999999999999999999999999999999999999999999998754 25788999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
++||++|+.|..+.+++++...++++.+++|+....++
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999998766544
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHH
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGL 291 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 291 (453)
..+|+++||||+|..+..+++.-+.+|+.+.++... .....++.....+...+|...|+.+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHH
Confidence 567999999999999999999999999888755433 5667777778888888899999888
Q ss_pred HHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcE
Q psy9620 292 LNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKF 371 (453)
Q Consensus 292 l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~ 371 (453)
+..... +.+++|||.|+..++.+...|...++.+..+++.|++.-|..-+.+|+.++..+||.||+++||+|||-.+.
T Consensus 255 l~~~~~--~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 255 LGGRIK--DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred Hhcccc--ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 887643 458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHh
Q psy9620 372 VINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTE 421 (453)
Q Consensus 372 VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 421 (453)
|||||+|.+..-|+||+||+.|+|..|.+|.++.+++..++-+|-.++..
T Consensus 333 vinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 333 VINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred cccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 99999999999999999999999999999999999998888777766544
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=7.3e-43 Score=363.39 Aligned_cols=277 Identities=23% Similarity=0.327 Sum_probs=210.8
Q ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH
Q psy9620 119 NFPDYVLKEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 119 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~ 197 (453)
+....+...+++ +||..|+|+|.++|+.++.|+|+|+++|||+|||+||++|+|.. .+.+|||+|+++
T Consensus 443 pw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTLVISPLiS 511 (1195)
T PLN03137 443 PWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISPLVS 511 (1195)
T ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEEEEeCHHH
Confidence 344556665554 58999999999999999999999999999999999999999853 346999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeCCccCCC-------------------------------------------------
Q psy9620 198 LAQQIQEVARDFGSSTYLRSTCVYGGASKGP------------------------------------------------- 228 (453)
Q Consensus 198 La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~------------------------------------------------- 228 (453)
|+.++...+... ++++..+.++.....
T Consensus 512 LmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVI 587 (1195)
T PLN03137 512 LIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVI 587 (1195)
T ss_pred HHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceecc
Confidence 998655555443 233333333211000
Q ss_pred --------------------------CCCceEEEEeccCcHHHHHHHHHhhccc-eEEEecccccccCccceeEEEEccc
Q psy9620 229 --------------------------QPDRQVLMWSATWPREVQKLAEDFLDSY-IQINIGSLTLSANHNIQQVVEVCAE 281 (453)
Q Consensus 229 --------------------------~~~~q~v~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 281 (453)
-+..+++++|||++..+.+.+...+... ..+.... ....++. +.+...
T Consensus 588 DEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S---f~RpNL~--y~Vv~k 662 (1195)
T PLN03137 588 DEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS---FNRPNLW--YSVVPK 662 (1195)
T ss_pred CcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc---cCccceE--EEEecc
Confidence 0578899999999998887655554321 1111111 1112222 222222
Q ss_pred cch-hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 282 HEK-ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 282 ~~k-~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
..+ ...+..++... ....+.||||.++++|+.++..|...++.+..+|++|++.+|..++++|+.|+++|||||+++
T Consensus 663 ~kk~le~L~~~I~~~--~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAF 740 (1195)
T PLN03137 663 TKKCLEDIDKFIKEN--HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAF 740 (1195)
T ss_pred chhHHHHHHHHHHhc--ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechh
Confidence 211 22333333321 224578999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 361 ARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 361 ~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
+||||+|+|++||||++|.+++.|+||+|||||.|.++.|++|+...|....+.++.
T Consensus 741 GMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 741 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred hcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999888776666664
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1e-42 Score=350.27 Aligned_cols=267 Identities=24% Similarity=0.349 Sum_probs=208.0
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 130 RQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 130 ~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.+||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. +..+|||+||++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 459999999999999999999999999999999999999999852 346999999999999998888765
Q ss_pred cCCCCceEEEEeCCccCC-------------------------------------C------------------------
Q psy9620 210 GSSTYLRSTCVYGGASKG-------------------------------------P------------------------ 228 (453)
Q Consensus 210 ~~~~~~~~~~~~gg~~~~-------------------------------------~------------------------ 228 (453)
+ +.+..+.++.... .
T Consensus 75 g----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 G----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred C----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 3 3333332222110 0
Q ss_pred ---------CCCceEEEEeccCcHHHHHHHHHhh--ccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhc
Q psy9620 229 ---------QPDRQVLMWSATWPREVQKLAEDFL--DSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISS 297 (453)
Q Consensus 229 ---------~~~~q~v~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 297 (453)
.++.+++++|||+++.+.......+ .++..+.. .. ...++...+... .......+..++.. .
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-s~---~r~nl~~~v~~~-~~~~~~~l~~~l~~--~ 223 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT-SF---DRPNLYYEVRRK-TPKILEDLLRFIRK--E 223 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC-CC---CCCCcEEEEEeC-CccHHHHHHHHHHH--h
Confidence 0577899999999998776554443 23322221 11 112222222111 11222333333332 2
Q ss_pred CCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC
Q psy9620 298 KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY 377 (453)
Q Consensus 298 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 377 (453)
.....+||||+|+++|+.++..|...++.+..+|++|++.+|..++++|++|+++|||||+++++|||+|+|++||||++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~ 303 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL 303 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC
Confidence 33456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHH
Q psy9620 378 PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDV 418 (453)
Q Consensus 378 p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 418 (453)
|.++++|+||+|||||.|.+|.|++|+++.|...++.++..
T Consensus 304 P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 304 PKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 99999999999999999999999999999988877776643
No 37
>KOG4284|consensus
Probab=100.00 E-value=1.2e-43 Score=340.93 Aligned_cols=293 Identities=30% Similarity=0.462 Sum_probs=257.0
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
.|.-...|+++.|...++..|+..+|..||++|..|||.++.+-|+|++|..|+|||++|.+.+++.+.... ..+
T Consensus 20 ~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~-----~~~ 94 (980)
T KOG4284|consen 20 QSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS-----SHI 94 (980)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc-----Ccc
Confidence 345556899999999999999999999999999999999999999999999999999999999988776542 577
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCC-CCceEEEEeCCccCCCC-------------------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSS-TYLRSTCVYGGASKGPQ------------------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~------------------------------------- 229 (453)
.++||+||||+|.|+.+.+.+++.. .+.++.+..||+.....
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLD 174 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLD 174 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEec
Confidence 8999999999999999999999864 58999999999875543
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcccc----
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH---- 282 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---- 282 (453)
..+|++.||||.|.++..++..|++++..+...... ...-.|+|++......
T Consensus 175 EADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d-~~L~GikQyv~~~~s~nnsv 253 (980)
T KOG4284|consen 175 EADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADD-VQLFGIKQYVVAKCSPNNSV 253 (980)
T ss_pred cHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCC-ceeechhheeeeccCCcchH
Confidence 578999999999999999999999999888765544 3334567776655432
Q ss_pred ----chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 283 ----EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 283 ----~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
.|...|-++++.| +-..+||||+....|+.++..|...|++|.++.|.|++.+|..+++.++.-.++|||+||
T Consensus 254 eemrlklq~L~~vf~~i---py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTD 330 (980)
T KOG4284|consen 254 EEMRLKLQKLTHVFKSI---PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTD 330 (980)
T ss_pred HHHHHHHHHHHHHHhhC---chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecc
Confidence 3445555555544 345889999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 359 VAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
..+||||-++|++|||.|.|.+.+.|+||||||||.|..|.+++|+.....
T Consensus 331 LtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 331 LTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred hhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999987654
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=8.8e-42 Score=352.21 Aligned_cols=273 Identities=22% Similarity=0.376 Sum_probs=210.2
Q ss_pred CHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 121 PDYVLKEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 121 ~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
++...+.|++ +||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. ...+|||+|+++|+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~ 78 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLM 78 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHH
Confidence 3334444544 59999999999999999999999999999999999999999853 23599999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCccCC----------------------------------------------------
Q psy9620 200 QQIQEVARDFGSSTYLRSTCVYGGASKG---------------------------------------------------- 227 (453)
Q Consensus 200 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~---------------------------------------------------- 227 (453)
.|+.+.++.++ +.+.++.++....
T Consensus 79 ~dqv~~l~~~g----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 79 KDQVDQLLANG----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHHcC----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccc
Confidence 99988887653 2222222211100
Q ss_pred ----------------CCCCceEEEEeccCcHHHHHHHHHhh--ccceEEEecccccccCccceeEEEEccccchhhhHH
Q psy9620 228 ----------------PQPDRQVLMWSATWPREVQKLAEDFL--DSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 289 (453)
Q Consensus 228 ----------------~~~~~q~v~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 289 (453)
..+..+++++|||.+..+.......+ .++.. ..... ...++. +.+.....+...+.
T Consensus 155 G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~-~~~~~---~r~nl~--~~v~~~~~~~~~l~ 228 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI-QISSF---DRPNIR--YTLVEKFKPLDQLM 228 (607)
T ss_pred cCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEE-EECCC---CCCcce--eeeeeccchHHHHH
Confidence 00577899999999987765443333 23322 22211 112222 12222222333333
Q ss_pred HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 290 ~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
.++ ......++||||+|+++|+.++..|...++.+..+|++|++.+|..+++.|+.|+++|||||+++++|||+|+|
T Consensus 229 ~~l---~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V 305 (607)
T PRK11057 229 RYV---QEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNV 305 (607)
T ss_pred HHH---HhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCc
Confidence 333 33456789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
++|||||+|.|.++|+||+|||||.|.+|.|++|+++.|...++.+++
T Consensus 306 ~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~ 353 (607)
T PRK11057 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (607)
T ss_pred CEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988777666553
No 39
>KOG0350|consensus
Probab=100.00 E-value=1.9e-42 Score=324.35 Aligned_cols=302 Identities=25% Similarity=0.380 Sum_probs=246.8
Q ss_pred ccccccCCCHH----------HHHHHHHCCCCCCCHHHHHHHHHHhc---------CCcEEEEecCCCcchhhhhHHHHH
Q psy9620 113 TEFAEANFPDY----------VLKEVKRQGFDRPTPIQAQGWPIAMS---------GSNMVGVAQTGSGKTLAYMLPAIV 173 (453)
Q Consensus 113 ~~f~~~~l~~~----------l~~~l~~~g~~~~~~~Q~~~i~~i~~---------g~d~li~a~TGsGKT~~~~l~~l~ 173 (453)
..|+.+++.+. +.+++.++++....|+|..++|.++. .+|+.+.||||||||++|.||+++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 44555555544 44558899999999999999998862 579999999999999999999999
Q ss_pred HhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------
Q psy9620 174 HINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------ 229 (453)
Q Consensus 174 ~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------ 229 (453)
.+.+.+- +.-++|||+||++|+.|+++.+.++....++.++.+.|..+....
T Consensus 207 ~L~~R~v----~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLV 282 (620)
T KOG0350|consen 207 LLSSRPV----KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLV 282 (620)
T ss_pred HHccCCc----cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHH
Confidence 9876532 346899999999999999999999999999998777765433221
Q ss_pred ----------------------------------------------------------------------------CCce
Q psy9620 230 ----------------------------------------------------------------------------PDRQ 233 (453)
Q Consensus 230 ----------------------------------------------------------------------------~~~q 233 (453)
+..+
T Consensus 283 DHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~ 362 (620)
T KOG0350|consen 283 DHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLW 362 (620)
T ss_pred HhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhH
Confidence 3345
Q ss_pred EEEEeccCcHHHHHHHHHhhccceEEEec---ccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcch
Q psy9620 234 VLMWSATWPREVQKLAEDFLDSYIQINIG---SLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETK 310 (453)
Q Consensus 234 ~v~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~ 310 (453)
.+++|||+...-.++...-+..|....+. ...++.+..+.+....+....+.-.+..++.. .+-.++|+|+++.
T Consensus 363 kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~---~k~~r~lcf~~S~ 439 (620)
T KOG0350|consen 363 KLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS---NKLNRTLCFVNSV 439 (620)
T ss_pred hhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHH---hhcceEEEEecch
Confidence 77889998777777766666666333322 12345556666666666666666666666654 3567999999999
Q ss_pred hHHHHHHHHHH----hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHH
Q psy9620 311 RKVDKITKSIQ----NYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIH 386 (453)
Q Consensus 311 ~~~~~l~~~L~----~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~q 386 (453)
..+.+++..|. ....++-.+.|.++...|...+++|+.|.++||||+|+++||||+.+|+.|||||+|.+...|+|
T Consensus 440 ~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVH 519 (620)
T KOG0350|consen 440 SSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVH 519 (620)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHH
Confidence 99999999987 33566777999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHh
Q psy9620 387 RIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTE 421 (453)
Q Consensus 387 r~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 421 (453)
|+||++|+|+.|.|+.+++..+.+.+.++++....
T Consensus 520 R~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 520 RAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred hhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 99999999999999999999999999888876554
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.5e-40 Score=344.06 Aligned_cols=267 Identities=25% Similarity=0.408 Sum_probs=211.3
Q ss_pred HHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 127 EVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 127 ~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
.|++ +||.+|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. ...+|||+|+++|+.|+.+.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHH
Confidence 3443 69999999999999999999999999999999999999999842 33589999999999999988
Q ss_pred HHHhcCCCCceEEEEeCCccCCCC--------------------------------------------------------
Q psy9620 206 ARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------------------------- 229 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------------------- 229 (453)
++.++ +.+..+.++......
T Consensus 73 l~~~g----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 73 LRAAG----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHcC----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHH
Confidence 88763 444444333211100
Q ss_pred ------------CCceEEEEeccCcHHHHHHHHHhhc--cceEEEecccccccCccceeEEEEccccchhhhHHHHHHhh
Q psy9620 230 ------------PDRQVLMWSATWPREVQKLAEDFLD--SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDI 295 (453)
Q Consensus 230 ------------~~~q~v~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 295 (453)
+..+++++|||.+..+.......+. ++..+ ... ....++. +.......+...+.+++..
T Consensus 149 ~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~~---~~r~nl~--~~v~~~~~~~~~l~~~l~~- 221 (591)
T TIGR01389 149 EYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEF-ITS---FDRPNLR--FSVVKKNNKQKFLLDYLKK- 221 (591)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ecC---CCCCCcE--EEEEeCCCHHHHHHHHHHh-
Confidence 4567999999999888766555543 22221 111 1112222 2222333444555555543
Q ss_pred hcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 296 SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 296 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
....++||||+|++.|+.+++.|...++.+..+|++|++.+|..+++.|.+|+++|||||+++++|||+|+|++||||
T Consensus 222 --~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~ 299 (591)
T TIGR01389 222 --HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHY 299 (591)
T ss_pred --cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEc
Confidence 335689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
++|.|++.|+|++|||||.|.++.|++|++..|....+.+++
T Consensus 300 ~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 300 DMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred CCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHh
Confidence 999999999999999999999999999999888766665553
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=9.9e-40 Score=345.20 Aligned_cols=282 Identities=23% Similarity=0.318 Sum_probs=213.9
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
.|++++||+.+++.+++.||.+|+|+|.++++. +++++|++++||||||||++|++|++.++.. +.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 588999999999999999999999999999998 7789999999999999999999999988742 5579999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
+|+++||.|+++.++++.. .++++..++|+......
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~ 152 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSA 152 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCC
Confidence 9999999999999998753 47888888887643321
Q ss_pred -----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccccccc----Cccc--eeEEEEccccchhh
Q psy9620 230 -----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSA----NHNI--QQVVEVCAEHEKEN 286 (453)
Q Consensus 230 -----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i--~~~~~~~~~~~k~~ 286 (453)
+..|++++|||++. ..++++++....+........... ...+ ...........+ .
T Consensus 153 ~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~-~ 230 (737)
T PRK02362 153 NRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK-D 230 (737)
T ss_pred cchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccc-h
Confidence 46799999999964 455555543221110000000000 0000 000000000111 1
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc------------------------------------CCeEEEE
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY------------------------------------GWAAVGI 330 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------------~~~~~~~ 330 (453)
....++.... ...+++||||+|++.|+.++..|... ...+.++
T Consensus 231 ~~~~~~~~~~-~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~h 309 (737)
T PRK02362 231 DTLNLVLDTL-EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFH 309 (737)
T ss_pred HHHHHHHHHH-HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEee
Confidence 2222232222 24579999999999999998888643 1368899
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cC-----CCCChhHHHHhhhcccCCCCc--ce
Q psy9620 331 HGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FD-----YPNNSEDYIHRIGRTGRSDNT--GT 399 (453)
Q Consensus 331 h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d-----~p~s~~~y~qr~GRagR~g~~--g~ 399 (453)
|++|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.|.+ |.
T Consensus 310 Hagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~ 389 (737)
T PRK02362 310 HAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGE 389 (737)
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999997 76 588999999999999999865 89
Q ss_pred EEEEEcCC
Q psy9620 400 SYTFFTQQ 407 (453)
Q Consensus 400 ~~~~~~~~ 407 (453)
|++++...
T Consensus 390 ~ii~~~~~ 397 (737)
T PRK02362 390 AVLLAKSY 397 (737)
T ss_pred EEEEecCc
Confidence 99988654
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.4e-38 Score=339.37 Aligned_cols=284 Identities=20% Similarity=0.286 Sum_probs=204.7
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCC-CCCCcEEEEEcCCHHH
Q psy9620 120 FPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLK-PGDGPIVLVLAPTREL 198 (453)
Q Consensus 120 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vlil~Ptr~L 198 (453)
|++.+.+.+++ +|..|||+|.++|+.+++|+|++++||||||||++|++|++..+....... ...++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 66777777665 699999999999999999999999999999999999999999887532211 1346789999999999
Q ss_pred HHHHHHHHHH-------h----cCCC-CceEEEEeCCccCCCC-------------------------------------
Q psy9620 199 AQQIQEVARD-------F----GSST-YLRSTCVYGGASKGPQ------------------------------------- 229 (453)
Q Consensus 199 a~q~~~~~~~-------~----~~~~-~~~~~~~~gg~~~~~~------------------------------------- 229 (453)
+.|+++.+.+ + +... ++++.+.+|+.+...+
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999875542 2 2233 6777878777542110
Q ss_pred -----------------------------CCceEEEEeccCcHHHHHHHHHhhcc-----ceEEEecccccccCccceeE
Q psy9620 230 -----------------------------PDRQVLMWSATWPREVQKLAEDFLDS-----YIQINIGSLTLSANHNIQQV 275 (453)
Q Consensus 230 -----------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~ 275 (453)
...|++++|||+++ ...++.++... +..+.+..........+...
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 45799999999965 34444443221 11111111000000001000
Q ss_pred -----EEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc------CCeEEEEcCCCCHHHHHHHHH
Q psy9620 276 -----VEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY------GWAAVGIHGDKSQQERDYVLK 344 (453)
Q Consensus 276 -----~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~~~~ 344 (453)
............+...+..+.. ...++||||+|+..|+.++..|... +..+..+||+|++++|..+++
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~-~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~ 334 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIK-EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEE 334 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHH
Confidence 0001111122333444444332 2568999999999999999999873 467999999999999999999
Q ss_pred HHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC-CCcceEEEEEcC
Q psy9620 345 EFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS-DNTGTSYTFFTQ 406 (453)
Q Consensus 345 ~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~-g~~g~~~~~~~~ 406 (453)
.|++|+++|||||+++++|||+|+|++||+++.|.+..+|+||+||+||. +..+.++++...
T Consensus 335 ~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 335 KLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 99999999999999999999999999999999999999999999999987 444555555543
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=9.2e-38 Score=329.87 Aligned_cols=285 Identities=19% Similarity=0.185 Sum_probs=218.8
Q ss_pred CHHHHHHHHH-CCCCCCCHHHHHHHHHHhcC------CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 121 PDYVLKEVKR-QGFDRPTPIQAQGWPIAMSG------SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 121 ~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
+..+.+.+.+ ++| +||++|.+||+.++++ .|++++|+||||||++|++|++..+.. +++++||+
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvLv 507 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVLV 507 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEEe
Confidence 3455555544 588 6999999999999874 799999999999999999999987753 56799999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC-------------C-------------------------------
Q psy9620 194 PTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP-------------Q------------------------------- 229 (453)
Q Consensus 194 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~-------------~------------------------------- 229 (453)
||++||.|+++.+++++...++++..++++.+... +
T Consensus 508 PT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrfgv 587 (926)
T TIGR00580 508 PTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFGV 587 (926)
T ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccccch
Confidence 99999999999999988878888887776543211 0
Q ss_pred ----------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCC
Q psy9620 230 ----------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKD 299 (453)
Q Consensus 230 ----------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 299 (453)
...|+++||||+.+....+......++..+...... ...+...+... ........++..+. .
T Consensus 588 ~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~---~~~~i~~~i~~el~--~ 659 (926)
T TIGR00580 588 KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEY---DPELVREAIRRELL--R 659 (926)
T ss_pred hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEec---CHHHHHHHHHHHHH--c
Confidence 568999999998776655554444555444432211 12233333211 11111122333332 3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY 377 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 377 (453)
.++++|||++++.++.+++.|... ++.+..+||.|++.+|+.++++|++|+.+|||||+++++|||+|++++||+++.
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC
Confidence 578999999999999999999985 788999999999999999999999999999999999999999999999999998
Q ss_pred CC-ChhHHHHhhhcccCCCCcceEEEEEcCCC--hHHHHHHHHHHHhc
Q psy9620 378 PN-NSEDYIHRIGRTGRSDNTGTSYTFFTQQN--SRQAKDLIDVLTES 422 (453)
Q Consensus 378 p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~ 422 (453)
|. +..+|+||+||+||.++.|.|++++.+.+ .....+-++.+++.
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 75 67899999999999999999999997653 23444444555444
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.4e-38 Score=331.85 Aligned_cols=284 Identities=21% Similarity=0.288 Sum_probs=212.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
+|+++++++.+.+.+++.||.+|+|+|.++++. +++++|+++++|||||||++|.+|++.++.. .+.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-------~~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-------EGGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-------cCCeEEEE
Confidence 578899999999999999999999999999986 7899999999999999999999999988764 25679999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
+|+++|+.|+++.+..+. ..++++..++|+......
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~ 153 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSY 153 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCc
Confidence 999999999999998864 457888888887643321
Q ss_pred --------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcccc--ch-hhhHHHHH
Q psy9620 230 --------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH--EK-ENKLFGLL 292 (453)
Q Consensus 230 --------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~k-~~~l~~ll 292 (453)
...|+|++|||++. ..++++++....+.......... ...+.+........ .+ ...+..++
T Consensus 154 ~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (720)
T PRK00254 154 DRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWLNAELVVSDWRPVKLR-KGVFYQGFLFWEDGKIERFPNSWESLV 231 (720)
T ss_pred cchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHhCCccccCCCCCCcce-eeEecCCeeeccCcchhcchHHHHHHH
Confidence 46799999999964 56666654332211100000000 00000011111111 01 11222233
Q ss_pred HhhhcCCCCcEEEEEcchhHHHHHHHHHHhc---------------------------------CCeEEEEcCCCCHHHH
Q psy9620 293 NDISSKDENKTIIFAETKRKVDKITKSIQNY---------------------------------GWAAVGIHGDKSQQER 339 (453)
Q Consensus 293 ~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------------------------------~~~~~~~h~~~~~~~r 339 (453)
..... ...++||||+|++.|+.++..|... ...+.++|++|++.+|
T Consensus 232 ~~~i~-~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 232 YDAVK-KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HHHHH-hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 22222 3569999999999999888776421 2358999999999999
Q ss_pred HHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE-------cCCCC-ChhHHHHhhhcccCCC--CcceEEEEEcCCC
Q psy9620 340 DYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN-------FDYPN-NSEDYIHRIGRTGRSD--NTGTSYTFFTQQN 408 (453)
Q Consensus 340 ~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~-------~d~p~-s~~~y~qr~GRagR~g--~~g~~~~~~~~~~ 408 (453)
..+++.|++|.++|||||+++++|+|+|++++||. ++.|. +..+|+||+|||||.| ..|.++++++.++
T Consensus 311 ~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 311 VLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999999999999999999999999999994 45443 5789999999999975 5699999988755
No 45
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-38 Score=311.31 Aligned_cols=273 Identities=26% Similarity=0.409 Sum_probs=217.8
Q ss_pred HHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 126 KEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 126 ~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
..|++ +||..+++-|.++|..+++++|+|+.+|||+||++||++|++.. ...+|||+|..+|.+.+.+
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVD 75 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHH
Confidence 33444 48999999999999999999999999999999999999999853 2259999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------------------
Q psy9620 205 VARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------------------- 229 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------------------- 229 (453)
.++..+ +++.++.+..+....
T Consensus 76 ~l~~~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 76 QLEAAG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHHcC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 998864 566655555333322
Q ss_pred -------------CCceEEEEeccCcHHHHHHHHHhhc-cceEEEecccccccCccceeEEEEccccchhhhHHHHHHhh
Q psy9620 230 -------------PDRQVLMWSATWPREVQKLAEDFLD-SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDI 295 (453)
Q Consensus 230 -------------~~~q~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 295 (453)
++.+++.+|||.++.++..+...+. +...+.+... ..+++...+.... +....+. ++...
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf---dRpNi~~~v~~~~--~~~~q~~-fi~~~ 225 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSF---DRPNLALKVVEKG--EPSDQLA-FLATV 225 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC---CCchhhhhhhhcc--cHHHHHH-HHHhh
Confidence 6789999999999998876666553 2212222221 1122322221111 1222333 33322
Q ss_pred hcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 296 SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 296 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
........||||.|++.++.++++|...|+.+..+|++|+.++|+.+.++|..++.+|+|||.++.+|||.|||.+||||
T Consensus 226 ~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~ 305 (590)
T COG0514 226 LPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHY 305 (590)
T ss_pred ccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEe
Confidence 23456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHH
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVL 419 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l 419 (453)
|+|.|+++|+|.+|||||.|.+..|++||.+.|....+.+++.-
T Consensus 306 ~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 306 DLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred cCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 99999999999999999999999999999999988777766653
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.4e-37 Score=322.51 Aligned_cols=293 Identities=20% Similarity=0.235 Sum_probs=218.5
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 126 KEVKRQGFDRPTPIQAQGWPIAMSG------SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 126 ~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
+.+..++| +||++|.++++.+.++ .++|++|+||||||++|++|++..+. .+++++|++||++||
T Consensus 253 ~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--------~g~q~lilaPT~~LA 323 (681)
T PRK10917 253 KFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--------AGYQAALMAPTEILA 323 (681)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEeccHHHH
Confidence 33445677 7999999999999876 37999999999999999999998774 367799999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCccCCC-------------C-------------------------------------
Q psy9620 200 QQIQEVARDFGSSTYLRSTCVYGGASKGP-------------Q------------------------------------- 229 (453)
Q Consensus 200 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~-------------~------------------------------------- 229 (453)
.|+++.+++++...++++.+++|+.+... .
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~qr~~l 403 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVEQRLAL 403 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHHHHHHH
Confidence 99999999999888899999999876211 0
Q ss_pred ----CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEE
Q psy9620 230 ----PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTII 305 (453)
Q Consensus 230 ----~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lV 305 (453)
...++++||||+.+....+.. ..+.....+.... .....+...+. ...+...+.+.+.... ....+++|
T Consensus 404 ~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p-~~r~~i~~~~~---~~~~~~~~~~~i~~~~-~~g~q~~v 476 (681)
T PRK10917 404 REKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELP-PGRKPITTVVI---PDSRRDEVYERIREEI-AKGRQAYV 476 (681)
T ss_pred HhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCC-CCCCCcEEEEe---CcccHHHHHHHHHHHH-HcCCcEEE
Confidence 357999999997665443332 2222111222111 11122333222 2223334444444333 34569999
Q ss_pred EEcch--------hHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 306 FAETK--------RKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 306 F~~s~--------~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
||+.. ..++.+++.|... ++.+..+||+|++.+|+.++++|++|+.+|||||+++++|||+|++++||++
T Consensus 477 ~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~ 556 (681)
T PRK10917 477 VCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIE 556 (681)
T ss_pred EEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEe
Confidence 99954 4566778888765 5789999999999999999999999999999999999999999999999999
Q ss_pred CCCC-ChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHH
Q psy9620 376 DYPN-NSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALA 434 (453)
Q Consensus 376 d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~ 434 (453)
+.|. ..+.|+||+||+||.+..|.|+++++........+.++.+.....-..-.-.++.
T Consensus 557 ~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~ 616 (681)
T PRK10917 557 NAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDLE 616 (681)
T ss_pred CCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhHh
Confidence 9997 5788999999999999999999999754444555566667665443332333444
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=6.1e-37 Score=330.29 Aligned_cols=298 Identities=19% Similarity=0.176 Sum_probs=224.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 122 DYVLKEVKRQGFDRPTPIQAQGWPIAMSG------SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 122 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
++..+....+.| .||++|.++|+.++++ .|+|++++||+|||.+|+.+++..+. .+++++||+||
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------~g~qvlvLvPT 658 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------NHKQVAVLVPT 658 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------cCCeEEEEeCc
Confidence 344455566788 8999999999999986 89999999999999999988876653 36789999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC----------------------------------------------
Q psy9620 196 RELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ---------------------------------------------- 229 (453)
Q Consensus 196 r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---------------------------------------------- 229 (453)
++||.|+++.+++++...++++.+++++.+...+
T Consensus 659 ~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG~~~ 738 (1147)
T PRK10689 659 TLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRH 738 (1147)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcchhH
Confidence 9999999999998776667777766665332110
Q ss_pred --------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCC
Q psy9620 230 --------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN 301 (453)
Q Consensus 230 --------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~ 301 (453)
.++|+++||||+.+....++...+.++..+...... ...++..+.... .......++..+. ..+
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~---~~~~k~~il~el~--r~g 810 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYD---SLVVREAILREIL--RGG 810 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecC---cHHHHHHHHHHHh--cCC
Confidence 578999999998888777777777777666543321 123333333221 1111223344432 256
Q ss_pred cEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCC-
Q psy9620 302 KTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYP- 378 (453)
Q Consensus 302 ~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p- 378 (453)
+++|||+++..++.+++.|... +..+..+||+|++.+|+.++++|++|+.+|||||+++++|||+|++++||..+..
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~ 890 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCC
Confidence 8999999999999999999987 7889999999999999999999999999999999999999999999999955443
Q ss_pred CChhHHHHhhhcccCCCCcceEEEEEcCCC--hHHHHHHHHHHHhcCC---CCChHHHHHHhh
Q psy9620 379 NNSEDYIHRIGRTGRSDNTGTSYTFFTQQN--SRQAKDLIDVLTESNH---PVDPKLSALASR 436 (453)
Q Consensus 379 ~s~~~y~qr~GRagR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~~~---~v~~~l~~~~~~ 436 (453)
.+..+|+||+||+||.++.|.|++++.+.+ ....++-++.+++... -..-.+.+|.-+
T Consensus 891 fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~r 953 (1147)
T PRK10689 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 (1147)
T ss_pred CCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc
Confidence 356789999999999999999999886542 3344444455554433 333344444433
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=9e-37 Score=316.34 Aligned_cols=299 Identities=21% Similarity=0.256 Sum_probs=219.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 122 DYVLKEVKRQGFDRPTPIQAQGWPIAMSG------SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 122 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
..+.+.++.++| +||++|.++|+.++++ .+.+++|+||||||++|++|++..+. .+.+++|++||
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--------~g~qvlilaPT 293 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--------AGYQVALMAPT 293 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------cCCcEEEECCH
Confidence 344556677789 8999999999999865 25899999999999999999998774 35679999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC----------------------------------------------
Q psy9620 196 RELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ---------------------------------------------- 229 (453)
Q Consensus 196 r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---------------------------------------------- 229 (453)
++||.|+++.+++++...++++.+++|+......
T Consensus 294 ~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 294 EILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccHHH
Confidence 9999999999999988888999999988653210
Q ss_pred --------C---CceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcC
Q psy9620 230 --------P---DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSK 298 (453)
Q Consensus 230 --------~---~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 298 (453)
. ..++++||||+.+....+.. ..+.....+.... .....+...+ .... ....+...+.... .
T Consensus 374 r~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p-~~r~~i~~~~--~~~~-~~~~~~~~i~~~l-~ 446 (630)
T TIGR00643 374 RKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELP-PGRKPITTVL--IKHD-EKDIVYEFIEEEI-A 446 (630)
T ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCC-CCCCceEEEE--eCcc-hHHHHHHHHHHHH-H
Confidence 2 68899999997654333221 1111111111111 0111222222 1222 2233444443322 2
Q ss_pred CCCcEEEEEcch--------hHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCC
Q psy9620 299 DENKTIIFAETK--------RKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDD 368 (453)
Q Consensus 299 ~~~~~lVF~~s~--------~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~ 368 (453)
...+++|||+.. ..++.+++.|.+. ++.+..+||+|++.+|..++++|++|+.+|||||+++++|||+|+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~ 526 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCC
Confidence 356899999876 4566777777753 678999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCC-ChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHhh
Q psy9620 369 VKFVINFDYPN-NSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASR 436 (453)
Q Consensus 369 v~~VI~~d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~~ 436 (453)
+++||+++.|. +.+.|+||+||+||.+..|.|++++.........+.++.+.....-..-...++.-+
T Consensus 527 v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~R 595 (630)
T TIGR00643 527 ATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLELR 595 (630)
T ss_pred CcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhcC
Confidence 99999999986 688899999999999999999999954444445555667766555444344455444
No 49
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.1e-37 Score=317.12 Aligned_cols=262 Identities=18% Similarity=0.199 Sum_probs=197.9
Q ss_pred CCCCCCCHHHHHHHHHHhcCC-cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE-EcCCHHHHHHHHHHHHH
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGS-NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV-LAPTRELAQQIQEVARD 208 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~-d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli-l~Ptr~La~q~~~~~~~ 208 (453)
.||. |+|+|.++++.+++|+ ++++++|||||||.++.++++.. ... ...++.|| ++|||+|+.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~-----~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG-----AKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc-----ccccceEEEeCchHHHHHHHHHHHHH
Confidence 3896 9999999999999998 57778999999999776555522 111 23455665 66999999999999998
Q ss_pred hcCCC-----------------------CceEEEEeCCccCCCC------------------------------------
Q psy9620 209 FGSST-----------------------YLRSTCVYGGASKGPQ------------------------------------ 229 (453)
Q Consensus 209 ~~~~~-----------------------~~~~~~~~gg~~~~~~------------------------------------ 229 (453)
+++.. .+++.+++||.+...+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi 164 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPL 164 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccc
Confidence 87644 4788999999765432
Q ss_pred ------------------------------C---------CceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCc
Q psy9620 230 ------------------------------P---------DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANH 270 (453)
Q Consensus 230 ------------------------------~---------~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (453)
. ++|+++||||++.++.++...++.++..+.+...... ..
T Consensus 165 ~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~-a~ 243 (844)
T TIGR02621 165 HAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLA-AK 243 (844)
T ss_pred hhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccccc-cc
Confidence 1 1599999999999888888888777665555433322 23
Q ss_pred cceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHH-----HHHHH
Q psy9620 271 NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERD-----YVLKE 345 (453)
Q Consensus 271 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~-----~~~~~ 345 (453)
.+.+.+ ......+...+...+..+......++||||||++.|+.+++.|...++ ..+||+|++.+|+ .++++
T Consensus 244 ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~ 320 (844)
T TIGR02621 244 KIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNR 320 (844)
T ss_pred ceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHH
Confidence 334432 222333433444433333334457899999999999999999998876 8899999999999 88999
Q ss_pred Hhc----CC-------CcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcc-eEEEEEcC
Q psy9620 346 FRN----GR-------AGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTG-TSYTFFTQ 406 (453)
Q Consensus 346 f~~----g~-------~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g-~~~~~~~~ 406 (453)
|++ +. .+|||||+++++||||+. ++||++..| ++.|+||+||+||.|..+ ..+.+++.
T Consensus 321 Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 321 FLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 987 44 689999999999999986 889998877 799999999999998754 33555543
No 50
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.9e-37 Score=312.88 Aligned_cols=283 Identities=24% Similarity=0.297 Sum_probs=227.3
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 119 NFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 119 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
-|++.+.+.+++. |..|||.|.+|||.+.+|+|+|++||||||||+++.+|++..+.......+..+..+|+|+|.|+|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 4788999999988 999999999999999999999999999999999999999999988743334467899999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------------
Q psy9620 199 AQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------------- 229 (453)
Q Consensus 199 a~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------------- 229 (453)
..++...+...+...++.+.+.+|+++....
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999999999999999999998876543
Q ss_pred ----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcccc-----chhhhH
Q psy9620 230 ----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH-----EKENKL 288 (453)
Q Consensus 230 ----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~k~~~l 288 (453)
.+.|.+.+|||.. +....++++......+.+...... ...+..+...... .....+
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~~--k~~~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSAA--KKLEIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccC-CHHHHHHHhcCCCCceEEEEcccC--CcceEEEEecCCccccccchhHHH
Confidence 5789999999996 455666666544211111111111 2222222211111 122333
Q ss_pred HHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcC-CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC
Q psy9620 289 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG-WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD 367 (453)
Q Consensus 289 ~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip 367 (453)
...+.++... ...+|||+||+..++.++..|.... ..+..|||.++.++|..++++|++|+.+++|||+.++-|||+.
T Consensus 243 ~~~i~~~v~~-~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 243 YERIAELVKK-HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHHhh-cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 3444444333 3489999999999999999999886 8999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCChhHHHHhhhcccCC-CCcceEEEEEcC
Q psy9620 368 DVKFVINFDYPNNSEDYIHRIGRTGRS-DNTGTSYTFFTQ 406 (453)
Q Consensus 368 ~v~~VI~~d~p~s~~~y~qr~GRagR~-g~~g~~~~~~~~ 406 (453)
+|+.|||+..|.++..++||+||+|+. +...+++++...
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999976 555677777665
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-36 Score=319.95 Aligned_cols=276 Identities=20% Similarity=0.270 Sum_probs=206.5
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
+|++++|++.+++.+.+.+|. ++++|.++++.+++++|++++||||||||+++.++++..+.. +.++||++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 578899999999999999985 999999999999999999999999999999999999887753 35699999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------------
Q psy9620 194 PTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------------- 229 (453)
Q Consensus 194 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------- 229 (453)
|+++||.|+++.++++. ..++++...+|+......
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~ 151 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDED 151 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCC
Confidence 99999999999998864 356777777775443211
Q ss_pred ----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEE-----Ecc-ccchhhh
Q psy9620 230 ----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVE-----VCA-EHEKENK 287 (453)
Q Consensus 230 ----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~-~~~k~~~ 287 (453)
++.|+|++|||++. ..++++++....+..... . ..+...+. ... .......
T Consensus 152 rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~~~r----~--vpl~~~i~~~~~~~~~~~~~~~~~ 224 (674)
T PRK01172 152 RGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKSNFR----P--VPLKLGILYRKRLILDGYERSQVD 224 (674)
T ss_pred ccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCCCCC----C--CCeEEEEEecCeeeeccccccccc
Confidence 46799999999964 556666543222111100 0 01110000 010 1111112
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-------------------------CCeEEEEcCCCCHHHHHHH
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-------------------------GWAAVGIHGDKSQQERDYV 342 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------~~~~~~~h~~~~~~~r~~~ 342 (453)
+..++.... ...+++||||++++.|+.++..|... ...+.++|++|++++|..+
T Consensus 225 ~~~~i~~~~-~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~v 303 (674)
T PRK01172 225 INSLIKETV-NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFI 303 (674)
T ss_pred HHHHHHHHH-hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHH
Confidence 334444332 23579999999999999999988653 1247889999999999999
Q ss_pred HHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC---------CCChhHHHHhhhcccCCCC--cceEEEEEcCCC
Q psy9620 343 LKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY---------PNNSEDYIHRIGRTGRSDN--TGTSYTFFTQQN 408 (453)
Q Consensus 343 ~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~---------p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~~ 408 (453)
++.|++|.++|||||+++++|+|+|+..+|| .|. |.+..+|.||+|||||.|. .|.+++++...+
T Consensus 304 e~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 304 EEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 9999999999999999999999999875544 332 4578899999999999984 577888876543
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.5e-36 Score=307.79 Aligned_cols=263 Identities=16% Similarity=0.202 Sum_probs=195.5
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCcchhh---------hhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 138 PIQAQGWPIAMSGSNMVGVAQTGSGKTLA---------YMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 138 ~~Q~~~i~~i~~g~d~li~a~TGsGKT~~---------~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
.+|+++++.+++++++|++|+||||||.+ |++|.+..+.... .....+.++|++||||||.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 47999999999999999999999999987 4455554443211 012356799999999999999998876
Q ss_pred hcCC---CCceEEEEeCCccCC----C----C-------------------------------------------CCceE
Q psy9620 209 FGSS---TYLRSTCVYGGASKG----P----Q-------------------------------------------PDRQV 234 (453)
Q Consensus 209 ~~~~---~~~~~~~~~gg~~~~----~----~-------------------------------------------~~~q~ 234 (453)
.... .+..+.+.+|+.... . . ..+|+
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ 324 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSL 324 (675)
T ss_pred HhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccchhHHHHHHHHhhhhcCEE
Confidence 4322 244556666665421 0 0 23599
Q ss_pred EEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc---------cchhhhHHHHHHhhhcCCCCcEEE
Q psy9620 235 LMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE---------HEKENKLFGLLNDISSKDENKTII 305 (453)
Q Consensus 235 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~k~~~l~~ll~~~~~~~~~~~lV 305 (453)
++||||++.++..+ ..++.++..+.+... ....+++.+..... ......+...+........+.+||
T Consensus 325 ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLV 400 (675)
T PHA02653 325 FLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIV 400 (675)
T ss_pred EEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEE
Confidence 99999999888776 578888777766432 12334444322110 011122233333222223468999
Q ss_pred EEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHH-hcCCCcEEEEeccCccCCCCCCCcEEEEcC---CCC
Q psy9620 306 FAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEF-RNGRAGILVATDVAARGLDVDDVKFVINFD---YPN 379 (453)
Q Consensus 306 F~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f-~~g~~~vLvaT~~~~~GiDip~v~~VI~~d---~p~ 379 (453)
||+++.+|+.+++.|... ++.+..+||+|++. ++++++| ++|+.+|||||+++++|||||+|++||++| .|.
T Consensus 401 Flpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~ 478 (675)
T PHA02653 401 FVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE 478 (675)
T ss_pred EECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC
Confidence 999999999999999987 68999999999975 5677787 789999999999999999999999999999 565
Q ss_pred ---------ChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 380 ---------NSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 380 ---------s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
|.++|+||+|||||. .+|.|+.|+++++.
T Consensus 479 ~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 479 PFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred cccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 888999999999999 89999999998764
No 53
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.4e-36 Score=301.15 Aligned_cols=260 Identities=19% Similarity=0.199 Sum_probs=217.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|..+++.++.|+ |+.+.||+|||++|.+|++.... .++.|+||+||++||.|.++++..+..
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 66 89999999999999999 99999999999999999998754 366799999999999999999999999
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
..++++.+++|+.+....
T Consensus 170 ~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 170 ALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred hcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 999999999888542100
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 230 -------------------------------------------------------------------------------- 229 (453)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (453)
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence
Q ss_pred -----------------------------------------------------------------------------CCc
Q psy9620 230 -----------------------------------------------------------------------------PDR 232 (453)
Q Consensus 230 -----------------------------------------------------------------------------~~~ 232 (453)
.-.
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 223
Q ss_pred eEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhH
Q psy9620 233 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRK 312 (453)
Q Consensus 233 q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~ 312 (453)
++..||+|.+....++.+.|..+++.+...... .....+.+..+...+|...|..++..+.. ...++||||+|++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~-~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHA-QGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHH
Confidence 567899999988888888888777665544332 22233445556667788888887776532 34689999999999
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC---CCc-----EEEEcCCCCChhHH
Q psy9620 313 VDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD---DVK-----FVINFDYPNNSEDY 384 (453)
Q Consensus 313 ~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip---~v~-----~VI~~d~p~s~~~y 384 (453)
++.++..|...++++..+|+.+. +|+..+..|+.+...|+||||+++||+||+ +|. +||++++|.|...|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y 563 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARID 563 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHH
Confidence 99999999999999999999855 555666667777778999999999999999 776 99999999999999
Q ss_pred HHhhhcccCCCCcceEEEEEcCCC
Q psy9620 385 IHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 385 ~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
+||+|||||.|.+|.+++|++.+|
T Consensus 564 ~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 564 RQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred HHhcccccCCCCCeEEEEEechhH
Confidence 999999999999999999999866
No 54
>KOG0329|consensus
Probab=100.00 E-value=7.9e-37 Score=263.90 Aligned_cols=274 Identities=28% Similarity=0.492 Sum_probs=232.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
+-|.+.-|.|+|++++-.+||..|+.+|.++||-..-|-|++.+|..|.|||.+|.+..|+.+.... ....+|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~-----g~vsvlvm 116 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD-----GQVSVLVM 116 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC-----CeEEEEEE
Confidence 4577888999999999999999999999999999999999999999999999999999887764321 24579999
Q ss_pred cCCHHHHHHHHHHHHHhcCC-CCceEEEEeCCccCCCC------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSS-TYLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
|.|||||-|+..+...|.+. ..+++.+.+||......
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 99999999999888887654 36899999999877654
Q ss_pred -------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHH
Q psy9620 230 -------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFG 290 (453)
Q Consensus 230 -------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 290 (453)
...|+++||||++.+++...+.|+.+|..+.++.......+.++|.+....+.+|..++.+
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d 276 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND 276 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 6789999999999999999999999999998887766666788888888888999999999
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
+|+.+ +-++++||+.+... | + | ..+ ||||+++.||+||..|+
T Consensus 277 LLd~L---eFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgmdiervN 318 (387)
T KOG0329|consen 277 LLDVL---EFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIERVN 318 (387)
T ss_pred hhhhh---hhcceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhccccCcccce
Confidence 98876 35689999988654 0 0 2 223 89999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCC-ChHHHHHHHHHHHhcCCCCChH
Q psy9620 371 FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ-NSRQAKDLIDVLTESNHPVDPK 429 (453)
Q Consensus 371 ~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~v~~~ 429 (453)
.|||||+|.+.++|+||++||||.|..|.++.|+... +...+..+.+.++-...++|++
T Consensus 319 i~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 319 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 9999999999999999999999999999999999864 4455566655555555555655
No 55
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.4e-33 Score=292.40 Aligned_cols=256 Identities=16% Similarity=0.243 Sum_probs=190.4
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH-HhcCCCCceE
Q psy9620 139 IQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR-DFGSSTYLRS 217 (453)
Q Consensus 139 ~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~-~~~~~~~~~~ 217 (453)
+-.+.+..+.+++++|++|+||||||++|.++++.... .++++||+.|||++|.|+++.+. .++...+..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 34456667778899999999999999999999987652 24579999999999999999885 4444444444
Q ss_pred EEEeCCccCCCC-------------------------------------------------------CCceEEEEeccCc
Q psy9620 218 TCVYGGASKGPQ-------------------------------------------------------PDRQVLMWSATWP 242 (453)
Q Consensus 218 ~~~~gg~~~~~~-------------------------------------------------------~~~q~v~~SAT~~ 242 (453)
...+.+...... .+.|+|+||||++
T Consensus 78 Gy~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~ 157 (819)
T TIGR01970 78 GYRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLD 157 (819)
T ss_pred EEEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 333222211100 5679999999998
Q ss_pred HHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchh-hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHH
Q psy9620 243 REVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE-NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQ 321 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~ 321 (453)
.+. ...++.++..+.+.... ..++..+......++. ..+...+..+.....+.+||||+++.+++.+++.|.
T Consensus 158 ~~~---l~~~l~~~~vI~~~gr~----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~ 230 (819)
T TIGR01970 158 GER---LSSLLPDAPVVESEGRS----FPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLA 230 (819)
T ss_pred HHH---HHHHcCCCcEEEecCcc----eeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH
Confidence 753 35666655444433221 2234443333222221 122233333333346789999999999999999998
Q ss_pred h---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCC------------------C
Q psy9620 322 N---YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPN------------------N 380 (453)
Q Consensus 322 ~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~------------------s 380 (453)
+ .++.+..+||+|++++|..+++.|++|+.+||||||++++|||||+|++||++++|+ |
T Consensus 231 ~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iS 310 (819)
T TIGR01970 231 ERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRIS 310 (819)
T ss_pred hhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEEC
Confidence 7 478999999999999999999999999999999999999999999999999999875 3
Q ss_pred hhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 381 SEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 381 ~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
.++|+||+|||||. .+|.||.|+++.+..
T Consensus 311 kasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 311 QASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred HHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 45699999999999 899999999976543
No 56
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5e-33 Score=291.87 Aligned_cols=254 Identities=15% Similarity=0.238 Sum_probs=190.7
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH-HhcCCCCceEE
Q psy9620 140 QAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR-DFGSSTYLRST 218 (453)
Q Consensus 140 Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~-~~~~~~~~~~~ 218 (453)
-.+.+..+.++++++++|+||||||++|.++++.... ...++||++|||++|.|+++.+. .++...+..+.
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 3455666778899999999999999999999886532 12479999999999999999885 44555555555
Q ss_pred EEeCCccCCCC-------------------------------------------------------CCceEEEEeccCcH
Q psy9620 219 CVYGGASKGPQ-------------------------------------------------------PDRQVLMWSATWPR 243 (453)
Q Consensus 219 ~~~gg~~~~~~-------------------------------------------------------~~~q~v~~SAT~~~ 243 (453)
..+++...... .+.|+++||||++.
T Consensus 82 y~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~ 161 (812)
T PRK11664 82 YRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred EEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCH
Confidence 44444321110 46799999999986
Q ss_pred HHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhh-hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHh
Q psy9620 244 EVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKEN-KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN 322 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~ 322 (453)
+. ...++.+...+.+.... ..+++.+......++.. .+...+..+.....+.+||||+++.+++.+++.|..
T Consensus 162 ~~---l~~~~~~~~~I~~~gr~----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~ 234 (812)
T PRK11664 162 DR---LQQLLPDAPVIVSEGRS----FPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLAS 234 (812)
T ss_pred HH---HHHhcCCCCEEEecCcc----ccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 52 34666655444433221 22444443333322222 222334444334467999999999999999999987
Q ss_pred ---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCC------------------Ch
Q psy9620 323 ---YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPN------------------NS 381 (453)
Q Consensus 323 ---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~------------------s~ 381 (453)
.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||||+|++||++++++ |.
T Consensus 235 ~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSk 314 (812)
T PRK11664 235 RVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQ 314 (812)
T ss_pred hccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeech
Confidence 578899999999999999999999999999999999999999999999999988764 34
Q ss_pred hHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 382 EDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 382 ~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
++|.||+|||||. .+|.||.++++.+.
T Consensus 315 asa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 315 ASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred hhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 6899999999999 79999999997643
No 57
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6.4e-33 Score=300.74 Aligned_cols=241 Identities=23% Similarity=0.303 Sum_probs=174.7
Q ss_pred EEecCCCcchhhhhHHHHHHhhhcCCC-----CCCCCcEEEEEcCCHHHHHHHHHHHHHh-----------c-CCCCceE
Q psy9620 155 GVAQTGSGKTLAYMLPAIVHINHQSQL-----KPGDGPIVLVLAPTRELAQQIQEVARDF-----------G-SSTYLRS 217 (453)
Q Consensus 155 i~a~TGsGKT~~~~l~~l~~~~~~~~~-----~~~~~~~vlil~Ptr~La~q~~~~~~~~-----------~-~~~~~~~ 217 (453)
|+||||||||++|++|+|..+...... ....++++|||+|+++|+.|+.+.++.. + ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 1234689999999999999999988641 1 1346888
Q ss_pred EEEeCCccCCCC-----------------------------------------------------------------CCc
Q psy9620 218 TCVYGGASKGPQ-----------------------------------------------------------------PDR 232 (453)
Q Consensus 218 ~~~~gg~~~~~~-----------------------------------------------------------------~~~ 232 (453)
...+|+++...+ .+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 889998754331 467
Q ss_pred eEEEEeccCcHHHHHHHHHhhcc-ceEEEecccccccCccceeEEEEccccch----------------h-----hhHHH
Q psy9620 233 QVLMWSATWPREVQKLAEDFLDS-YIQINIGSLTLSANHNIQQVVEVCAEHEK----------------E-----NKLFG 290 (453)
Q Consensus 233 q~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~k----------------~-----~~l~~ 290 (453)
|+|++|||+++ .+++++++..+ ++.+.. ... .....+... ....+..+ . .....
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~-~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPA-MRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCC-CcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 99999999976 56666655432 444322 111 111122211 11111000 0 01112
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcC---------------------------------CeEEEEcCCCCHH
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYG---------------------------------WAAVGIHGDKSQQ 337 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~~h~~~~~~ 337 (453)
++..+. ...++||||||+..|+.++..|.+.. +.+..|||+|+++
T Consensus 237 il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 237 ILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 333332 35689999999999999999997531 1256899999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC-CCcceEE
Q psy9620 338 ERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS-DNTGTSY 401 (453)
Q Consensus 338 ~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~-g~~g~~~ 401 (453)
+|..+++.|++|++++||||+++++||||++|++||+++.|.++.+|+||+||+||. +..+.++
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 999999999999999999999999999999999999999999999999999999997 2234444
No 58
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.4e-32 Score=282.67 Aligned_cols=260 Identities=19% Similarity=0.223 Sum_probs=205.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|..+++.+++|+ |+.+.||+|||++|++|++.... .++.|+|++||++||.|.++++..+..
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al--------~G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL--------EGKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH--------cCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 66 89999999999998887 99999999999999999986554 366799999999999999999999999
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
..++++.++.|+.+...+
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg 224 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISG 224 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeC
Confidence 999999999988761110
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 230 -------------------------------------------------------------------------------- 229 (453)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (453)
T Consensus 225 ~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~d 304 (790)
T PRK09200 225 KPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVD 304 (790)
T ss_pred CCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCc
Confidence
Q ss_pred ---------------------------------------------------------CCceEEEEeccCcHHHHHHHHHh
Q psy9620 230 ---------------------------------------------------------PDRQVLMWSATWPREVQKLAEDF 252 (453)
Q Consensus 230 ---------------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~ 252 (453)
.-..+..||.|...+..++.+.|
T Consensus 305 YiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y 384 (790)
T PRK09200 305 YIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY 384 (790)
T ss_pred EEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh
Confidence 11245567777655444444444
Q ss_pred hccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcC
Q psy9620 253 LDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG 332 (453)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~ 332 (453)
-.+.+.+ .......... .....+....+|...+...+.... ....++||||+|+..++.++..|...++++..+|+
T Consensus 385 ~l~v~~I--Pt~kp~~r~d-~~~~i~~~~~~K~~al~~~i~~~~-~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 385 NMEVVQI--PTNRPIIRID-YPDKVFVTLDEKYKAVIEEVKERH-ETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred CCcEEEC--CCCCCccccc-CCCeEEcCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 3332222 1111011111 112333455667777777776542 24679999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC---CCCc-----EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEE
Q psy9620 333 DKSQQERDYVLKEFRNGRAGILVATDVAARGLDV---DDVK-----FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFF 404 (453)
Q Consensus 333 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi---p~v~-----~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~ 404 (453)
.+.+.++..+...++.| +|+|||++++||+|| |+|. +||++++|.+...|+||+|||||.|.+|.+++|+
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 99998888888777766 799999999999999 6998 9999999999999999999999999999999999
Q ss_pred cCCC
Q psy9620 405 TQQN 408 (453)
Q Consensus 405 ~~~~ 408 (453)
+.+|
T Consensus 539 s~eD 542 (790)
T PRK09200 539 SLED 542 (790)
T ss_pred cchH
Confidence 9765
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=6e-32 Score=264.46 Aligned_cols=244 Identities=22% Similarity=0.226 Sum_probs=170.0
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC-CCce--------------
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS-TYLR-------------- 216 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~-~~~~-------------- 216 (453)
+++++||||||||++|++|++..+... ...+++|++|+++|+.|+++.+..++.. .++-
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGD 74 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCC
Confidence 589999999999999999999876432 3557999999999999999998887421 1100
Q ss_pred ----------------------EE-----------------------------EEeCCccCCC---------------CC
Q psy9620 217 ----------------------ST-----------------------------CVYGGASKGP---------------QP 230 (453)
Q Consensus 217 ----------------------~~-----------------------------~~~gg~~~~~---------------~~ 230 (453)
+. ++......-. ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~ 154 (358)
T TIGR01587 75 SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDN 154 (358)
T ss_pred chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHc
Confidence 00 0000000000 04
Q ss_pred CceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEc--cccchhhhHHHHHHhhhcCCCCcEEEEEc
Q psy9620 231 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVC--AEHEKENKLFGLLNDISSKDENKTIIFAE 308 (453)
Q Consensus 231 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~k~~~l~~ll~~~~~~~~~~~lVF~~ 308 (453)
+.|+++||||+|..+.+++..+............. ......+.+... ....+...+..++..+ ....++||||+
T Consensus 155 ~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lVf~~ 230 (358)
T TIGR01587 155 DVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE--ERRFERHRFIKIESDKVGEISSLERLLEFI--KKGGKIAIIVN 230 (358)
T ss_pred CCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc--ccccccccceeeccccccCHHHHHHHHHHh--hCCCeEEEEEC
Confidence 68999999999977766665543321111111000 000111111111 1123444555555443 23579999999
Q ss_pred chhHHHHHHHHHHhcCC--eEEEEcCCCCHHHHHH----HHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChh
Q psy9620 309 TKRKVDKITKSIQNYGW--AAVGIHGDKSQQERDY----VLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSE 382 (453)
Q Consensus 309 s~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~r~~----~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~ 382 (453)
+++.|+.+++.|.+.+. .+..+||++++.+|.. +++.|++++.+|||||+++++|||++ +++||++..| .+
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 99999999999988765 5899999999999976 48999999999999999999999995 8899998877 88
Q ss_pred HHHHhhhcccCCCCc----ceEEEEEcCCC
Q psy9620 383 DYIHRIGRTGRSDNT----GTSYTFFTQQN 408 (453)
Q Consensus 383 ~y~qr~GRagR~g~~----g~~~~~~~~~~ 408 (453)
+|+||+||+||.|+. |..++|....+
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999999998754 36777766544
No 60
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=8.6e-32 Score=291.12 Aligned_cols=239 Identities=20% Similarity=0.268 Sum_probs=188.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|+ .|+++|.+++|.++.|+|++++||||+|||. |.++++..+.. .++++|||+||++|+.|+++.++.++.
T Consensus 78 G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~~ 148 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFGE 148 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHhh
Confidence 77 8999999999999999999999999999995 55555544432 367899999999999999999999988
Q ss_pred CCCceEEEEeCCccC---------------CCC-----------------------------------------------
Q psy9620 212 STYLRSTCVYGGASK---------------GPQ----------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~---------------~~~----------------------------------------------- 229 (453)
..++.+..++++... ..+
T Consensus 149 ~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lG 228 (1176)
T PRK09401 149 KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLG 228 (1176)
T ss_pred hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCC
Confidence 877777776665321 011
Q ss_pred --------------C------------------------CceEEEEeccCcHH-HHHHHHHhhccceEEEecccccccCc
Q psy9620 230 --------------P------------------------DRQVLMWSATWPRE-VQKLAEDFLDSYIQINIGSLTLSANH 270 (453)
Q Consensus 230 --------------~------------------------~~q~v~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (453)
. ..|++++|||+++. +.. .++.+...+.+.... ....
T Consensus 229 F~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~-~~~r 304 (1176)
T PRK09401 229 FSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPV-FYLR 304 (1176)
T ss_pred CCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcc-cccC
Confidence 0 47899999999864 332 233444445554443 2335
Q ss_pred cceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhH---HHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh
Q psy9620 271 NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRK---VDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFR 347 (453)
Q Consensus 271 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~---~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 347 (453)
++.+.+..+. ++...+..++..+ ..++||||+++.. |+.+++.|...++.+..+||+| ...+++|+
T Consensus 305 nI~~~yi~~~--~k~~~L~~ll~~l----~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~ 373 (1176)
T PRK09401 305 NIVDSYIVDE--DSVEKLVELVKRL----GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFE 373 (1176)
T ss_pred CceEEEEEcc--cHHHHHHHHHHhc----CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHH
Confidence 5666665444 5666677777654 3589999999887 9999999999999999999999 23459999
Q ss_pred cCCCcEEEE----eccCccCCCCCC-CcEEEEcCCCC------ChhHHHHhhhcccCC
Q psy9620 348 NGRAGILVA----TDVAARGLDVDD-VKFVINFDYPN------NSEDYIHRIGRTGRS 394 (453)
Q Consensus 348 ~g~~~vLva----T~~~~~GiDip~-v~~VI~~d~p~------s~~~y~qr~GRagR~ 394 (453)
+|+++|||| |++++||||+|+ |++|||||+|. ..+.|.||+||+...
T Consensus 374 ~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 374 EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 999999999 699999999999 89999999998 678899999998643
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=3.3e-31 Score=268.20 Aligned_cols=258 Identities=15% Similarity=0.155 Sum_probs=182.1
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
...|+++|.++++.++.+++.++++|||+|||+++...+. .+... ...++|||+||++|+.|+.+.+.+++..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~-~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSR-YYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH-HHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 3489999999999999999999999999999987644222 11211 2337999999999999999999998754
Q ss_pred CCceEEEEeCCccCCCC----------------------------------------------CCceEEEEeccCcHHHH
Q psy9620 213 TYLRSTCVYGGASKGPQ----------------------------------------------PDRQVLMWSATWPREVQ 246 (453)
Q Consensus 213 ~~~~~~~~~gg~~~~~~----------------------------------------------~~~q~v~~SAT~~~~~~ 246 (453)
....+..+.+|...... ..++++++|||++....
T Consensus 185 ~~~~~~~i~~g~~~~~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lGLTATp~~~~~ 264 (501)
T PHA02558 185 PREAMHKIYSGTAKDTDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGKSLTSIITKLDNCKFKFGLTGSLRDGKA 264 (501)
T ss_pred cccceeEEecCcccCCCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccchhHHHHHHhhhccceEEEEeccCCCccc
Confidence 44445455555443211 35689999999865322
Q ss_pred HHH--HHhhccceEEEecccccccC-----c--------------------cceeEEE-EccccchhhhHHHHHHhhhcC
Q psy9620 247 KLA--EDFLDSYIQINIGSLTLSAN-----H--------------------NIQQVVE-VCAEHEKENKLFGLLNDISSK 298 (453)
Q Consensus 247 ~~~--~~~~~~~~~~~~~~~~~~~~-----~--------------------~i~~~~~-~~~~~~k~~~l~~ll~~~~~~ 298 (453)
... ..++. ++...+....+... . ...+.+. ......+...+..++..+. .
T Consensus 265 ~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~-~ 342 (501)
T PHA02558 265 NILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA-K 342 (501)
T ss_pred cHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH-h
Confidence 111 11111 11111110000000 0 0000000 0111122233344444443 2
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe-ccCccCCCCCCCcEEEEcCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVAT-DVAARGLDVDDVKFVINFDY 377 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~GiDip~v~~VI~~d~ 377 (453)
...++||||++.++++.|++.|...+.++..+||+|++.+|..+++.|++++..||||| +++++|+|+|++++||++++
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p 422 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHP 422 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecC
Confidence 35689999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred CCChhHHHHhhhcccCCCCcce
Q psy9620 378 PNNSEDYIHRIGRTGRSDNTGT 399 (453)
Q Consensus 378 p~s~~~y~qr~GRagR~g~~g~ 399 (453)
+.|...|+||+||++|.+....
T Consensus 423 ~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 423 SKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred CcchhhhhhhhhccccCCCCCc
Confidence 9999999999999999865443
No 62
>KOG0351|consensus
Probab=100.00 E-value=9.4e-32 Score=280.65 Aligned_cols=269 Identities=21% Similarity=0.330 Sum_probs=213.4
Q ss_pred HHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 128 VKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 128 l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
...+|+..+++-|.++|..++.|+|+++.+|||.||++||++|++. .++.+|||.|.+.|++.+...+.
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l-----------~~gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL-----------LGGVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc-----------cCCceEEeccHHHHHHHHHHhhh
Confidence 3456999999999999999999999999999999999999999985 34579999999999988766663
Q ss_pred HhcCCCCceEEEEeCCccCCCC----------------------------------------------------------
Q psy9620 208 DFGSSTYLRSTCVYGGASKGPQ---------------------------------------------------------- 229 (453)
Q Consensus 208 ~~~~~~~~~~~~~~gg~~~~~~---------------------------------------------------------- 229 (453)
. .+|....+.++.....+
T Consensus 326 ~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 326 K----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred h----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 3 33555555554433211
Q ss_pred -----------------CCceEEEEeccCcHHHHHHHHHhhc--cceEEEecccccccCccceeEEEEccccchhhhHHH
Q psy9620 230 -----------------PDRQVLMWSATWPREVQKLAEDFLD--SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFG 290 (453)
Q Consensus 230 -----------------~~~q~v~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 290 (453)
+...++.++||.+..+++.+-..+. ++... ... ....++...+..... ...+..
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~--~~s--fnR~NL~yeV~~k~~---~~~~~~ 474 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELF--KSS--FNRPNLKYEVSPKTD---KDALLD 474 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCccee--ccc--CCCCCceEEEEeccC---ccchHH
Confidence 5679999999998888766555543 33311 111 223444433333222 222333
Q ss_pred HHHhhh-cCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 291 LLNDIS-SKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 291 ll~~~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
++..+. ......+||||.++.+|+.++..|+..++.+..+|++|+..+|..|.+.|..++++|+|||=++.+|||.|||
T Consensus 475 ~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DV 554 (941)
T KOG0351|consen 475 ILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDV 554 (941)
T ss_pred HHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCce
Confidence 333332 2456689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHH
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDV 418 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~ 418 (453)
+.||||.+|.+++.|+|-+|||||.|....|++|+...|...++.++.-
T Consensus 555 R~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 555 RFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred eEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999988877777653
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=9.6e-32 Score=256.46 Aligned_cols=280 Identities=23% Similarity=0.296 Sum_probs=227.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
...++.+|+.+.+.++..|+.++.|+|.-++.. +++|+|.+++++|+||||++..++-+..+.. .+.+.|+|
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfL 267 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFL 267 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEE
Confidence 456788999999999999999999999999987 6799999999999999999999888887765 36679999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
+|..+||+|-++.|+.....+++++..-.|-......
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEi 347 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEI 347 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeee
Confidence 9999999999999998777777777655543211110
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcc-ccchh
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCA-EHEKE 285 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~ 285 (453)
+..|+|.+|||+ .+-+++++.+-.+.+...- .+..+...+.++. +.+|.
T Consensus 348 HtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV-gNp~elA~~l~a~lV~y~~------RPVplErHlvf~~~e~eK~ 420 (830)
T COG1202 348 HTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV-GNPEELAKKLGAKLVLYDE------RPVPLERHLVFARNESEKW 420 (830)
T ss_pred eeccchhcccchhhHHHHHHHhCCCCeEEEEEeec-CChHHHHHHhCCeeEeecC------CCCChhHeeeeecCchHHH
Confidence 779999999998 4455677777665554332 2234555555565 66777
Q ss_pred hhHHHHHHhhhc-----CCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 286 NKLFGLLNDISS-----KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 286 ~~l~~ll~~~~~-----~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
+.+..+.+.-.. .-.+++|||++|++.|..++.+|...|+.+..+|++|+..+|..+...|.++++.++|+|.++
T Consensus 421 ~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL 500 (830)
T COG1202 421 DIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAAL 500 (830)
T ss_pred HHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhh
Confidence 777776654321 124689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEE----cCCCCChhHHHHhhhcccCCC--CcceEEEEEcCC
Q psy9620 361 ARGLDVDDVKFVIN----FDYPNNSEDYIHRIGRTGRSD--NTGTSYTFFTQQ 407 (453)
Q Consensus 361 ~~GiDip~v~~VI~----~d~p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~ 407 (453)
+.|+|+|+-.+|+. -.-..|+.+|.||.|||||.+ ..|++|+++.+.
T Consensus 501 ~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 501 AAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999998775542 222457999999999999986 459999998875
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.1e-31 Score=276.24 Aligned_cols=280 Identities=20% Similarity=0.264 Sum_probs=213.4
Q ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH
Q psy9620 118 ANFPDYVLKEVKRQGFDRPTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR 196 (453)
Q Consensus 118 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr 196 (453)
..+++.+.+-++..++.++.+.|+.++...+ +++|+|+|+|||||||+.+++.++..+... +.++|+|||++
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlk 86 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLK 86 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChH
Confidence 3477788888888888888888888887654 679999999999999999999999988763 45699999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-----------------------------------------------
Q psy9620 197 ELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ----------------------------------------------- 229 (453)
Q Consensus 197 ~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------------------------------------- 229 (453)
+||.++++.++ .....++++...+|+......
T Consensus 87 ALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~ 165 (766)
T COG1204 87 ALAEEKYEEFS-RLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGP 165 (766)
T ss_pred HHHHHHHHHhh-hHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCc
Confidence 99999999999 335678999999998875442
Q ss_pred -------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccc------hhhhHHH
Q psy9620 230 -------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHE------KENKLFG 290 (453)
Q Consensus 230 -------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------k~~~l~~ 290 (453)
...|++.+|||+| +..+++.+.-.+.+........+.......+.+....... ..+....
T Consensus 166 ~lE~iv~r~~~~~~~~rivgLSATlp-N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~ 244 (766)
T COG1204 166 VLESIVARMRRLNELIRIVGLSATLP-NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALE 244 (766)
T ss_pred eehhHHHHHHhhCcceEEEEEeeecC-CHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHH
Confidence 3479999999995 5778888876665533333333222222233333332222 2233333
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-------------------------------------CCeEEEEcCC
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNY-------------------------------------GWAAVGIHGD 333 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~ 333 (453)
++.... ...+++||||+|++.+...+..|... -..+.+||++
T Consensus 245 ~v~~~~-~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 245 LVLESL-AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAG 323 (766)
T ss_pred HHHHHH-hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccC
Confidence 333322 34679999999999999999998830 1236789999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEE----EcC-----CCCChhHHHHhhhcccCCCCc--ceEEE
Q psy9620 334 KSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVI----NFD-----YPNNSEDYIHRIGRTGRSDNT--GTSYT 402 (453)
Q Consensus 334 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI----~~d-----~p~s~~~y~qr~GRagR~g~~--g~~~~ 402 (453)
++.++|..+.+.|+.|.++|||||+++++|+|+|.-.+|| .|| .+-+.-+++||+|||||.|-+ |.+++
T Consensus 324 L~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 324 LPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 9999999999999999999999999999999999988887 366 456789999999999999755 66666
Q ss_pred EEcCC
Q psy9620 403 FFTQQ 407 (453)
Q Consensus 403 ~~~~~ 407 (453)
+.+..
T Consensus 404 ~~~~~ 408 (766)
T COG1204 404 LATSH 408 (766)
T ss_pred EecCc
Confidence 66443
No 65
>PRK14701 reverse gyrase; Provisional
Probab=99.98 E-value=2.2e-31 Score=293.75 Aligned_cols=272 Identities=18% Similarity=0.183 Sum_probs=202.2
Q ss_pred HHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHH
Q psy9620 123 YVLKEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQ 201 (453)
Q Consensus 123 ~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q 201 (453)
++.+.+++ .|| .|+++|+++++.+++|+|++++||||+|||++++++++.... .++++|||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHHH
Confidence 34455665 699 799999999999999999999999999999976666554321 36689999999999999
Q ss_pred HHHHHHHhcCCC--CceEEEEeCCccCCC-------------C-------------------------------------
Q psy9620 202 IQEVARDFGSST--YLRSTCVYGGASKGP-------------Q------------------------------------- 229 (453)
Q Consensus 202 ~~~~~~~~~~~~--~~~~~~~~gg~~~~~-------------~------------------------------------- 229 (453)
+.+.++.++... ++++..++|+.+... +
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecccccc
Confidence 999999987654 345555555543211 0
Q ss_pred -------------------------------------------------CCce-EEEEeccCcHHHHHHHHHhhccceEE
Q psy9620 230 -------------------------------------------------PDRQ-VLMWSATWPREVQKLAEDFLDSYIQI 259 (453)
Q Consensus 230 -------------------------------------------------~~~q-~v~~SAT~~~~~~~~~~~~~~~~~~~ 259 (453)
...| ++++|||+++... . ..++.++..+
T Consensus 218 nid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~-~~l~~~~l~f 295 (1638)
T PRK14701 218 NIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-R-VKLYRELLGF 295 (1638)
T ss_pred ccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-H-HHHhhcCeEE
Confidence 0123 5679999985311 1 1334555555
Q ss_pred EecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhH---HHHHHHHHHhcCCeEEEEcCCCCH
Q psy9620 260 NIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRK---VDKITKSIQNYGWAAVGIHGDKSQ 336 (453)
Q Consensus 260 ~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~---~~~l~~~L~~~~~~~~~~h~~~~~ 336 (453)
.+.... ....++.+.+.......+ ..+..+++.. ...+||||++++. |+.+++.|...|+.+..+|++
T Consensus 296 ~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~----g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 296 EVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL----GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC----CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 555443 333556666554443333 4566666543 4589999999886 589999999999999999994
Q ss_pred HHHHHHHHHHhcCCCcEEEEe----ccCccCCCCCC-CcEEEEcCCCC---ChhHHHHhh-------------hcccCCC
Q psy9620 337 QERDYVLKEFRNGRAGILVAT----DVAARGLDVDD-VKFVINFDYPN---NSEDYIHRI-------------GRTGRSD 395 (453)
Q Consensus 337 ~~r~~~~~~f~~g~~~vLvaT----~~~~~GiDip~-v~~VI~~d~p~---s~~~y~qr~-------------GRagR~g 395 (453)
|..++++|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|.. ||++|.|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 8899999999999999999 58999999999 99999999999 888776655 9999999
Q ss_pred CcceEEEEEcCCChHHHHHHH
Q psy9620 396 NTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 396 ~~g~~~~~~~~~~~~~~~~l~ 416 (453)
.+..+++.+...+...++.++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~l 465 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFLRSIL 465 (1638)
T ss_pred CcchhHHHhHHHHHHHHHHHh
Confidence 888887555555544444444
No 66
>KOG0352|consensus
Probab=99.98 E-value=7.8e-32 Score=248.64 Aligned_cols=281 Identities=21% Similarity=0.285 Sum_probs=207.6
Q ss_pred HHHHHHHHC-CCCC-CCHHHHHHHHHHh-cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 123 YVLKEVKRQ-GFDR-PTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 123 ~l~~~l~~~-g~~~-~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
.+.++|++. |+.. -++.|.+|+..+- ..+|+.+++|||+||++||+||.|.+ +...||++|..+|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALI 74 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALI 74 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHH
Confidence 455677764 6664 4789999999876 46799999999999999999999964 34799999999999
Q ss_pred HHHHHHHHHhcC------------------------CCCceEEEEeCCc--cCCCC------------------------
Q psy9620 200 QQIQEVARDFGS------------------------STYLRSTCVYGGA--SKGPQ------------------------ 229 (453)
Q Consensus 200 ~q~~~~~~~~~~------------------------~~~~~~~~~~gg~--~~~~~------------------------ 229 (453)
.++.+.+..+-- ...++...+.... +...|
T Consensus 75 kDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVS 154 (641)
T KOG0352|consen 75 KDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVS 154 (641)
T ss_pred HHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHh
Confidence 988887776521 0111211111100 00000
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHh--hccceEEEecccccccCccceeEEEE-ccccchhh
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDF--LDSYIQINIGSLTLSANHNIQQVVEV-CAEHEKEN 286 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~k~~ 286 (453)
++..-|.++||..+.+++.+-.- +++|+.+.-.... . .++-..+.+ ....+...
T Consensus 155 QWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F-R--~NLFYD~~~K~~I~D~~~ 231 (641)
T KOG0352|consen 155 QWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF-R--DNLFYDNHMKSFITDCLT 231 (641)
T ss_pred hhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch-h--hhhhHHHHHHHHhhhHhH
Confidence 67788999999999888655443 3455543322111 0 111000000 00112233
Q ss_pred hHHHHHHhhhc-------C---CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy9620 287 KLFGLLNDISS-------K---DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVA 356 (453)
Q Consensus 287 ~l~~ll~~~~~-------~---~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLva 356 (453)
.|.++.....- . ..+-.||||.|+++|++++-.|...|+++..+|+++-..||.+|.++|.++++.||+|
T Consensus 232 ~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~A 311 (641)
T KOG0352|consen 232 VLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAA 311 (641)
T ss_pred hHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEE
Confidence 34333332211 1 1246899999999999999999999999999999999999999999999999999999
Q ss_pred eccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 357 TDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 357 T~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
|..+.+|+|-|+|++|||+++|.|++-|.|..|||||.|....|-++|..+|.+.+.-|+.
T Consensus 312 T~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 312 TVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred EeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999888777764
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.98 E-value=8.8e-31 Score=265.37 Aligned_cols=261 Identities=19% Similarity=0.214 Sum_probs=205.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|..+.+.++.|+ |+.++||+|||++|.+|++..... +..|+|++||++||.|.++++..+..
T Consensus 54 g~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~ 122 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYR 122 (745)
T ss_pred CC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 66 89999999999988877 999999999999999999644432 33599999999999999999999999
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
..++++.+++++.+...+
T Consensus 123 ~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 123 FLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred cCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 999999999887543211
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 230 -------------------------------------------------------------------------------- 229 (453)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (453)
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence
Q ss_pred --------------------------------------------------------CCceEEEEeccCcHHHHHHHHHhh
Q psy9620 230 --------------------------------------------------------PDRQVLMWSATWPREVQKLAEDFL 253 (453)
Q Consensus 230 --------------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~ 253 (453)
.-.++..||.|...+..++.+.|-
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 362 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN 362 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC
Confidence 123456677777655555555444
Q ss_pred ccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCC
Q psy9620 254 DSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD 333 (453)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~ 333 (453)
.+.+.+...... .... .....+....+|...+...+.... ....|+||||+|+..++.++..|...++++..+|+.
T Consensus 363 l~vv~IPtnkp~--~R~d-~~d~i~~t~~~k~~ai~~~i~~~~-~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~ 438 (745)
T TIGR00963 363 LEVVVVPTNRPV--IRKD-LSDLVYKTEEEKWKAVVDEIKERH-AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK 438 (745)
T ss_pred CCEEEeCCCCCe--eeee-CCCeEEcCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC
Confidence 443332211110 0011 111223334456655655554443 357799999999999999999999999999999997
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCC-------CcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 334 KSQQERDYVLKEFRNGRAGILVATDVAARGLDVDD-------VKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 334 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~-------v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
+.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|.|...|.|++||+||.|.+|.+..|++.
T Consensus 439 --q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~ 516 (745)
T TIGR00963 439 --NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSL 516 (745)
T ss_pred --hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEec
Confidence 889999999999999999999999999999998 55999999999999999999999999999999999998
Q ss_pred CCh
Q psy9620 407 QNS 409 (453)
Q Consensus 407 ~~~ 409 (453)
+|.
T Consensus 517 eD~ 519 (745)
T TIGR00963 517 EDN 519 (745)
T ss_pred cHH
Confidence 763
No 68
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.98 E-value=1.1e-30 Score=266.47 Aligned_cols=171 Identities=15% Similarity=0.171 Sum_probs=128.5
Q ss_pred ceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchh
Q psy9620 232 RQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 311 (453)
Q Consensus 232 ~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~ 311 (453)
.++..||.|...+..++.+.|-.+.+. +.... +....-.....+....+|...+...+.... ....++||||+|+.
T Consensus 360 ~kl~GmTGTa~~~~~Ef~~iY~l~v~~--IPt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~-~~~~pvLIft~s~~ 435 (762)
T TIGR03714 360 NKLSGMTGTGKVAEKEFIETYSLSVVK--IPTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYH-ETGQPVLLITGSVE 435 (762)
T ss_pred chhcccCCCChhHHHHHHHHhCCCEEE--cCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHh-hCCCCEEEEECcHH
Confidence 345667777655555554444333222 21111 000111112344455667777777766543 34679999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC---------CCcEEEEcCCCCChh
Q psy9620 312 KVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD---------DVKFVINFDYPNNSE 382 (453)
Q Consensus 312 ~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip---------~v~~VI~~d~p~s~~ 382 (453)
.++.++..|...++++..+|+.+.+.++..+..+++.| .|+|||++++||+||+ ++.+|+++++|....
T Consensus 436 ~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ri 513 (762)
T TIGR03714 436 MSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRV 513 (762)
T ss_pred HHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHH
Confidence 99999999999999999999999998888887777666 7999999999999999 999999999998877
Q ss_pred HHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 383 DYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 383 ~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
+ +||+|||||.|.+|.+++|++.+|.
T Consensus 514 d-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 514 D-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred H-HHhhhcccCCCCceeEEEEEccchh
Confidence 7 9999999999999999999998663
No 69
>KOG0349|consensus
Probab=99.97 E-value=1.5e-31 Score=246.98 Aligned_cols=220 Identities=30% Similarity=0.497 Sum_probs=160.8
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHh---cCCCCceEEEEeCCccCCCC---------------------------------
Q psy9620 186 GPIVLVLAPTRELAQQIQEVARDF---GSSTYLRSTCVYGGASKGPQ--------------------------------- 229 (453)
Q Consensus 186 ~~~vlil~Ptr~La~q~~~~~~~~---~~~~~~~~~~~~gg~~~~~~--------------------------------- 229 (453)
.|.+||+-|.|||++|.+..+.+| .++..++...+.||.....|
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 578999999999999999855554 44445555555555433322
Q ss_pred ---------------------------------CCceEEEEeccCc-HHHHHHHHHhhccceEEEecccccccCccceeE
Q psy9620 230 ---------------------------------PDRQVLMWSATWP-REVQKLAEDFLDSYIQINIGSLTLSANHNIQQV 275 (453)
Q Consensus 230 ---------------------------------~~~q~v~~SAT~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 275 (453)
...|.+++|||+. -++.++.+..+.-|.-+...... .++..+.++
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhv 444 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHV 444 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccc
Confidence 4568899999975 34556666666655544443322 222333332
Q ss_pred EEEccc------------------------------cchhhhHHHHH------HhhhcCCCCcEEEEEcchhHHHHHHHH
Q psy9620 276 VEVCAE------------------------------HEKENKLFGLL------NDISSKDENKTIIFAETKRKVDKITKS 319 (453)
Q Consensus 276 ~~~~~~------------------------------~~k~~~l~~ll------~~~~~~~~~~~lVF~~s~~~~~~l~~~ 319 (453)
+..+.. .+....-..++ ..+......++||||.|+.+|+.|.++
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 222110 00111111111 122333456999999999999999999
Q ss_pred HHhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCC
Q psy9620 320 IQNY---GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDN 396 (453)
Q Consensus 320 L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~ 396 (453)
|.+. .+.++++|++..+.||.+.++.|+....+.|||||+++|||||..+-++||.-+|.+...|+||+||+||+..
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraer 604 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAER 604 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhh
Confidence 9986 4789999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cceEEEEEcC
Q psy9620 397 TGTSYTFFTQ 406 (453)
Q Consensus 397 ~g~~~~~~~~ 406 (453)
-|.+|+++..
T Consensus 605 mglaislvat 614 (725)
T KOG0349|consen 605 MGLAISLVAT 614 (725)
T ss_pred cceeEEEeec
Confidence 8999988764
No 70
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.6e-29 Score=239.64 Aligned_cols=267 Identities=26% Similarity=0.334 Sum_probs=197.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
.-+++.+|......++.+ |+|++.|||-|||+.+++-+..++... .+ ++|+|+||+-|+.|.++.++++..-
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------GG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------CC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 347889999988887765 999999999999999888777776653 23 7999999999999999999998766
Q ss_pred CCceEEEEeCCccCCCC-----------------------------------------------------------CCce
Q psy9620 213 TYLRSTCVYGGASKGPQ-----------------------------------------------------------PDRQ 233 (453)
Q Consensus 213 ~~~~~~~~~gg~~~~~~-----------------------------------------------------------~~~q 233 (453)
..-.++.+.|....... .++.
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ 164 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPL 164 (542)
T ss_pred ChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCce
Confidence 66677777777665432 5567
Q ss_pred EEEEeccCcHHHHHH---HHHhhccceEEE----------------------ecc-------------------------
Q psy9620 234 VLMWSATWPREVQKL---AEDFLDSYIQIN----------------------IGS------------------------- 263 (453)
Q Consensus 234 ~v~~SAT~~~~~~~~---~~~~~~~~~~~~----------------------~~~------------------------- 263 (453)
++.+|||+-.+.+.+ .+.+.-..+.+. ...
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 999999975443332 221111111100 000
Q ss_pred ----cccc---------------cC--c-------------------------cce------------------------
Q psy9620 264 ----LTLS---------------AN--H-------------------------NIQ------------------------ 273 (453)
Q Consensus 264 ----~~~~---------------~~--~-------------------------~i~------------------------ 273 (453)
...+ .. . .+.
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred eeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHH
Confidence 0000 00 0 000
Q ss_pred --------------eEEEEccccchhhhHHHHHHhhh-cCCCCcEEEEEcchhHHHHHHHHHHhcCCeEE--EE------
Q psy9620 274 --------------QVVEVCAEHEKENKLFGLLNDIS-SKDENKTIIFAETKRKVDKITKSIQNYGWAAV--GI------ 330 (453)
Q Consensus 274 --------------~~~~~~~~~~k~~~l~~ll~~~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~--~~------ 330 (453)
........+.|...+.+++.+.. ...+.++|||++.+++|+.+.++|...+..+. ++
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred hcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 00000112345555566665543 23456999999999999999999999887763 32
Q ss_pred -cCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 331 -HGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 331 -h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
..+|+|.++.++++.|+.|+.+|||||++.++|||||++++||.|++..|...++||.|||||. ..|.+++++++..
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 2579999999999999999999999999999999999999999999999999999999999998 8999999999873
No 71
>KOG0353|consensus
Probab=99.97 E-value=3e-30 Score=234.96 Aligned_cols=276 Identities=21% Similarity=0.324 Sum_probs=211.2
Q ss_pred cccCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcC
Q psy9620 116 AEANFPDYVLKEVKRQ-GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAP 194 (453)
Q Consensus 116 ~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 194 (453)
++++.++...+.|++. ...+++|.|.++|...+.++|++++.|||.||++||.+|+|.. ...+||+||
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~p 142 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICP 142 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeech
Confidence 4567777777777765 5678999999999999999999999999999999999999863 456999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------------
Q psy9620 195 TRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------------- 229 (453)
Q Consensus 195 tr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------------- 229 (453)
...|++++.-.++.++- ....+....++...
T Consensus 143 lislmedqil~lkqlgi----~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 143 LISLMEDQILQLKQLGI----DASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred hHHHHHHHHHHHHHhCc----chhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 99999998888887752 22211111111000
Q ss_pred ------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEc
Q psy9620 230 ------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVC 279 (453)
Q Consensus 230 ------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (453)
+...++.++||....+...++.++.--........ ....++...+...
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~--fnr~nl~yev~qk 296 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG--FNRPNLKYEVRQK 296 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc--cCCCCceeEeeeC
Confidence 67789999999988888777776542111111111 1123333222222
Q ss_pred cccchhhhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 280 AEHEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 280 ~~~~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
+. ...+.+.++.+.+.. ......||||-++++|+.++..|+..|+.+..+|+.|.+.+|.-+-..|..|+++|+|||-
T Consensus 297 p~-n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatv 375 (695)
T KOG0353|consen 297 PG-NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATV 375 (695)
T ss_pred CC-ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEe
Confidence 22 122333334443321 2345789999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCCcEEEEcCCCCChhHHHH-------------------------------------------hhhcccCCC
Q psy9620 359 VAARGLDVDDVKFVINFDYPNNSEDYIH-------------------------------------------RIGRTGRSD 395 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~p~s~~~y~q-------------------------------------------r~GRagR~g 395 (453)
.+.+|||-|+|++|||..+|.|++.|.| ..||+||.+
T Consensus 376 afgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~ 455 (695)
T KOG0353|consen 376 AFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD 455 (695)
T ss_pred eecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC
Confidence 9999999999999999999999999999 679999999
Q ss_pred CcceEEEEEcCCCh
Q psy9620 396 NTGTSYTFFTQQNS 409 (453)
Q Consensus 396 ~~g~~~~~~~~~~~ 409 (453)
.+..|++++--.|.
T Consensus 456 ~~a~cilyy~~~di 469 (695)
T KOG0353|consen 456 MKADCILYYGFADI 469 (695)
T ss_pred CcccEEEEechHHH
Confidence 99999999975543
No 72
>KOG0952|consensus
Probab=99.97 E-value=1.9e-29 Score=255.39 Aligned_cols=282 Identities=19% Similarity=0.236 Sum_probs=213.0
Q ss_pred CCCCCCCHHHHHHHHHHh-cCCcEEEEecCCCcchhhhhHHHHHHhhhcCC--CCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 131 QGFDRPTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQ--LKPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~--~~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
++|..++.+|+.++|.++ ++.|+|||||||+|||..|+|.+|..+..... ....++.++++|+|+++||..+.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 478899999999999988 67899999999999999999999998875221 122357789999999999999999999
Q ss_pred HhcCCCCceEEEEeCCccCCCC----------------------------------------------------------
Q psy9620 208 DFGSSTYLRSTCVYGGASKGPQ---------------------------------------------------------- 229 (453)
Q Consensus 208 ~~~~~~~~~~~~~~gg~~~~~~---------------------------------------------------------- 229 (453)
+-....++++..++|+......
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRt 265 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVART 265 (1230)
T ss_pred hhcccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHH
Confidence 8888889999999998654322
Q ss_pred --------CCceEEEEeccCcHHHHHHHHHhhccce-EEEecccccccCccceeEEEEcccc---chhh-----hHHHHH
Q psy9620 230 --------PDRQVLMWSATWPREVQKLAEDFLDSYI-QINIGSLTLSANHNIQQVVEVCAEH---EKEN-----KLFGLL 292 (453)
Q Consensus 230 --------~~~q~v~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~---~k~~-----~l~~ll 292 (453)
....+|.+|||+| ++.+++.++-.++. .+...... -.+..+.+.+...... .+.. ...+++
T Consensus 266 lr~vessqs~IRivgLSATlP-N~eDvA~fL~vn~~~glfsFd~~-yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~ 343 (1230)
T KOG0952|consen 266 LRLVESSQSMIRIVGLSATLP-NYEDVARFLRVNPYAGLFSFDQR-YRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVV 343 (1230)
T ss_pred HHHHHhhhhheEEEEeeccCC-CHHHHHHHhcCCCccceeeeccc-ccccceeeeEEeeecccchhhhhhHHHHHHHHHH
Confidence 4568999999995 57788887766632 22111111 2223344444433322 1111 112222
Q ss_pred HhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-----------------------CCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 293 NDISSKDENKTIIFAETKRKVDKITKSIQNY-----------------------GWAAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 293 ~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-----------------------~~~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
+.+ ..+.+++|||.++..+...|+.|.+. .....++|++|...+|..+.+.|..|
T Consensus 344 e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G 421 (1230)
T KOG0952|consen 344 EFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG 421 (1230)
T ss_pred HHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC
Confidence 222 24679999999999999999998753 12467899999999999999999999
Q ss_pred CCcEEEEeccCccCCCCCCCcEEEE----cCCCC------ChhHHHHhhhcccCC--CCcceEEEEEcCCChHHHHHHH
Q psy9620 350 RAGILVATDVAARGLDVDDVKFVIN----FDYPN------NSEDYIHRIGRTGRS--DNTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 350 ~~~vLvaT~~~~~GiDip~v~~VI~----~d~p~------s~~~y~qr~GRagR~--g~~g~~~~~~~~~~~~~~~~l~ 416 (453)
.++||+||..+++|+++|+--++|- ||.-. .+.+.+|.+|||||. ...|.++++.+.+....+..|+
T Consensus 422 ~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 422 HIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred CceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 9999999999999999998777662 44433 477889999999998 4669999998887766665554
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=3.6e-29 Score=242.64 Aligned_cols=233 Identities=21% Similarity=0.265 Sum_probs=162.0
Q ss_pred HHHHHHHHHhcCCc--EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC----
Q psy9620 139 IQAQGWPIAMSGSN--MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS---- 212 (453)
Q Consensus 139 ~Q~~~i~~i~~g~d--~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~---- 212 (453)
+|.++++.+.++.+ ++++||||||||++|++|++.. ..++++++|+++|++|+.+.++.+...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999998874 7889999999999999998841 234899999999999999988887522
Q ss_pred CCceEEEEeCCccC-----------------------------CCC----------------------------------
Q psy9620 213 TYLRSTCVYGGASK-----------------------------GPQ---------------------------------- 229 (453)
Q Consensus 213 ~~~~~~~~~gg~~~-----------------------------~~~---------------------------------- 229 (453)
.+..+..+.|.... ...
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 12333333332000 000
Q ss_pred ------------------------------CCceEEEEeccCcHHHHHHHHHh--hccceEEEecc-ccc--------c-
Q psy9620 230 ------------------------------PDRQVLMWSATWPREVQKLAEDF--LDSYIQINIGS-LTL--------S- 267 (453)
Q Consensus 230 ------------------------------~~~q~v~~SAT~~~~~~~~~~~~--~~~~~~~~~~~-~~~--------~- 267 (453)
...+++++|||+++.+...+... +..++....+. ... .
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 24689999999999877766654 33332221111 000 0
Q ss_pred -------cCccceeEEEEccccchhhhHHHHHHhhh----cCCCCcEEEEEcchhHHHHHHHHHHhcC--CeEEEEcCCC
Q psy9620 268 -------ANHNIQQVVEVCAEHEKENKLFGLLNDIS----SKDENKTIIFAETKRKVDKITKSIQNYG--WAAVGIHGDK 334 (453)
Q Consensus 268 -------~~~~i~~~~~~~~~~~k~~~l~~ll~~~~----~~~~~~~lVF~~s~~~~~~l~~~L~~~~--~~~~~~h~~~ 334 (453)
....+.+.+.. ....+...+..+++.+. .....++||||+|+..++.++..|+..+ +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 00133333322 22233333433333331 2345699999999999999999999864 5788899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhccc
Q psy9620 335 SQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTG 392 (453)
Q Consensus 335 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRag 392 (453)
++.+|+.+ ++.+|||||+++++|||++.+ +|| ++ |.+.++|+||+||+|
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99998754 378999999999999999987 566 45 899999999999987
No 74
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=3.4e-29 Score=263.35 Aligned_cols=276 Identities=21% Similarity=0.316 Sum_probs=213.7
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHH
Q psy9620 121 PDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ 200 (453)
Q Consensus 121 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~ 200 (453)
...+..++.+.|...|+++|.+|+..+.+|+|+||+.+||||||++|++|+++++.+.+. .++|+|.||++||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------a~AL~lYPtnALa~ 129 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS------ARALLLYPTNALAN 129 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC------ccEEEEechhhhHh
Confidence 344577888888889999999999999999999999999999999999999999988654 27999999999999
Q ss_pred HHHHHHHHhcCCCC--ceEEEEeCCccCCCC-------------------------------------------------
Q psy9620 201 QIQEVARDFGSSTY--LRSTCVYGGASKGPQ------------------------------------------------- 229 (453)
Q Consensus 201 q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~------------------------------------------------- 229 (453)
++.+.++++....+ +.+....|++.....
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 99999999987776 666666666543321
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcc--------
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCA-------- 280 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------- 280 (453)
...|+|++|||+.. -.+.++.+........+.... .......++...+
T Consensus 210 v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~n-p~e~~~~l~~~~f~~~v~~~g--~~~~~~~~~~~~p~~~~~~~~ 286 (851)
T COG1205 210 VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLAN-PGEFAEELFGRDFEVPVDEDG--SPRGLRYFVRREPPIRELAES 286 (851)
T ss_pred cchhHHHHHHHHHHHHHhccCCCceEEEEeccccC-hHHHHHHhcCCcceeeccCCC--CCCCceEEEEeCCcchhhhhh
Confidence 47899999999954 445556665544433233222 1222233332222
Q ss_pred -ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHH----HHHHhcC----CeEEEEcCCCCHHHHHHHHHHHhcCCC
Q psy9620 281 -EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKIT----KSIQNYG----WAAVGIHGDKSQQERDYVLKEFRNGRA 351 (453)
Q Consensus 281 -~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~----~~L~~~~----~~~~~~h~~~~~~~r~~~~~~f~~g~~ 351 (453)
.......+..++.... .+.-++|+|+.++..++.++ ..+...+ ..+..+++++...+|..++..|+.|+.
T Consensus 287 ~r~s~~~~~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~ 365 (851)
T COG1205 287 IRRSALAELATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGEL 365 (851)
T ss_pred cccchHHHHHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCc
Confidence 1123333333333332 34669999999999999997 4444445 568889999999999999999999999
Q ss_pred cEEEEeccCccCCCCCCCcEEEEcCCCC-ChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 352 GILVATDVAARGLDVDDVKFVINFDYPN-NSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 352 ~vLvaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
.++++|++++-||||.+++.||.+..|. +..+|+||+||+||.++.+..++....
T Consensus 366 ~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 366 LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 9999999999999999999999999999 899999999999999866666665553
No 75
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.97 E-value=8.4e-29 Score=268.38 Aligned_cols=235 Identities=19% Similarity=0.312 Sum_probs=174.2
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 124 VLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 124 l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
+.+.+.+.....|+++|+.+++.++.|+|++++||||+|||+ |.+|++..+.. .++++|||+||++||.|++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHH
Confidence 334444433448999999999999999999999999999996 66777665533 3678999999999999999
Q ss_pred HHHHHhcCCCCceEE---EEeCCccCCC-------------C--------------------------------C-----
Q psy9620 204 EVARDFGSSTYLRST---CVYGGASKGP-------------Q--------------------------------P----- 230 (453)
Q Consensus 204 ~~~~~~~~~~~~~~~---~~~gg~~~~~-------------~--------------------------------~----- 230 (453)
+.++.++...++.+. +++|+.+... + .
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhhccccH
Confidence 999999876665543 3445532210 0 0
Q ss_pred ---------------------------------------------Cce--EEEEecc-CcHHHHHHHHHhhccceEEEec
Q psy9620 231 ---------------------------------------------DRQ--VLMWSAT-WPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 231 ---------------------------------------------~~q--~v~~SAT-~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
.+| ++++||| +|..+.. .++.+...+.+.
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~ 295 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVG 295 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEec
Confidence 012 5678999 5654432 234444445554
Q ss_pred ccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcch---hHHHHHHHHHHhcCCeEEEEcCCCCHHHH
Q psy9620 263 SLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETK---RKVDKITKSIQNYGWAAVGIHGDKSQQER 339 (453)
Q Consensus 263 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~---~~~~~l~~~L~~~~~~~~~~h~~~~~~~r 339 (453)
... ....++.+.+..... +...+.++++.+ ..++||||+++ +.|+.++..|...++.+..+||+|++
T Consensus 296 ~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l----~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~--- 365 (1171)
T TIGR01054 296 GGS-DTLRNVVDVYVEDED--LKETLLEIVKKL----GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK--- 365 (1171)
T ss_pred Ccc-ccccceEEEEEeccc--HHHHHHHHHHHc----CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH---
Confidence 433 233455555543322 234566666543 45899999999 99999999999999999999999973
Q ss_pred HHHHHHHhcCCCcEEEEe----ccCccCCCCCC-CcEEEEcCCCCC
Q psy9620 340 DYVLKEFRNGRAGILVAT----DVAARGLDVDD-VKFVINFDYPNN 380 (453)
Q Consensus 340 ~~~~~~f~~g~~~vLvaT----~~~~~GiDip~-v~~VI~~d~p~s 380 (453)
.++++|++|+++||||| ++++||||+|+ |++|||||+|..
T Consensus 366 -~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 366 -EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred -HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 68999999999999994 99999999999 899999999964
No 76
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=4.9e-28 Score=259.17 Aligned_cols=126 Identities=29% Similarity=0.474 Sum_probs=111.0
Q ss_pred chhhhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCC--------CCHHHHHHHHHHHhcCCCcE
Q psy9620 283 EKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD--------KSQQERDYVLKEFRNGRAGI 353 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~--------~~~~~r~~~~~~f~~g~~~v 353 (453)
.|...|.++|..+.. ....++||||+++..|+.|++.|...++.+..+||. |++.+|..++++|++|+.+|
T Consensus 347 pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~v 426 (773)
T PRK13766 347 PKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNV 426 (773)
T ss_pred hHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCE
Confidence 345556666655432 356799999999999999999999999999999886 99999999999999999999
Q ss_pred EEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 354 LVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 354 LvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
||||+++++|+|+|++++||+||+|.+...|+||+||+||.+ +|.++++++....
T Consensus 427 LvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 427 LVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 999999999999999999999999999999999999999985 5889998886543
No 77
>KOG0354|consensus
Probab=99.96 E-value=6.2e-28 Score=241.64 Aligned_cols=265 Identities=26% Similarity=0.320 Sum_probs=185.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
..-.++.+|.+.+..+| ++|+|+++|||+|||+++...++.++...+ ..++|+++||+-|+.|+...+..++.
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccC
Confidence 34489999999999999 999999999999999999998888887653 36799999999999999988887765
Q ss_pred CCCceEEEEeCCcc-CCCC-------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGAS-KGPQ------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~-~~~~------------------------------------------------------------- 229 (453)
. .++....++.. ....
T Consensus 132 ~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~ 209 (746)
T KOG0354|consen 132 P--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKN 209 (746)
T ss_pred c--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhh
Confidence 4 34444444422 1111
Q ss_pred CCceEEEEeccCcHHHHHHHHHhhccceEEEeccc--------------------cc-----------------------
Q psy9620 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL--------------------TL----------------------- 266 (453)
Q Consensus 230 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~----------------------- 266 (453)
...|+|.+|||+..+..........-.+.+.+... ..
T Consensus 210 ~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~ 289 (746)
T KOG0354|consen 210 QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEE 289 (746)
T ss_pred ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhc
Confidence 33499999999875544433222111100000000 00
Q ss_pred ---------------------ccCccceeE----------------------EE------Ec------------------
Q psy9620 267 ---------------------SANHNIQQV----------------------VE------VC------------------ 279 (453)
Q Consensus 267 ---------------------~~~~~i~~~----------------------~~------~~------------------ 279 (453)
....+..+. +. ..
T Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e 369 (746)
T KOG0354|consen 290 GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELE 369 (746)
T ss_pred CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhc
Confidence 000000000 00 00
Q ss_pred ----------------------cccchhhhHHHHHHhh-hcCCCCcEEEEEcchhHHHHHHHHHHhc---CCeEEEEc--
Q psy9620 280 ----------------------AEHEKENKLFGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQNY---GWAAVGIH-- 331 (453)
Q Consensus 280 ----------------------~~~~k~~~l~~ll~~~-~~~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~~h-- 331 (453)
....|...+.+++.+. ...+..++||||.++..|+.|..+|... ++....+-
T Consensus 370 ~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 370 ARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQ 449 (746)
T ss_pred chhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeec
Confidence 0022333333333322 2234569999999999999999999832 22322222
Q ss_pred ------CCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEc
Q psy9620 332 ------GDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFT 405 (453)
Q Consensus 332 ------~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 405 (453)
.+|++.++.+++++|++|+++|||||+++++||||+.|++||-||.-.|+..++||.|| ||+ +.|.|+++++
T Consensus 450 ~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t 527 (746)
T KOG0354|consen 450 GKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTT 527 (746)
T ss_pred cccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEc
Confidence 37999999999999999999999999999999999999999999999999999999999 998 7899999999
Q ss_pred CC
Q psy9620 406 QQ 407 (453)
Q Consensus 406 ~~ 407 (453)
..
T Consensus 528 ~~ 529 (746)
T KOG0354|consen 528 GS 529 (746)
T ss_pred ch
Confidence 43
No 78
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.2e-26 Score=229.22 Aligned_cols=293 Identities=21% Similarity=0.255 Sum_probs=222.0
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 126 KEVKRQGFDRPTPIQAQGWPIAMSG------SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 126 ~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
+.+..+.| ++|..|++++..|... -+-|+++.-|||||++++++++..+. .|..+..++||--||
T Consensus 254 ~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~--------~G~Q~ALMAPTEILA 324 (677)
T COG1200 254 KFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE--------AGYQAALMAPTEILA 324 (677)
T ss_pred HHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH--------cCCeeEEeccHHHHH
Confidence 33455677 8999999999998853 24589999999999999999998875 466799999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------------------
Q psy9620 200 QQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------------------- 229 (453)
Q Consensus 200 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------------- 229 (453)
.|.++.+.++....++++..+.|.......
T Consensus 325 ~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~QR~~L 404 (677)
T COG1200 325 EQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVHQRLAL 404 (677)
T ss_pred HHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEeccccccHHHHHHH
Confidence 999999999999999999999887654332
Q ss_pred ----C-CceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEE
Q psy9620 230 ----P-DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTI 304 (453)
Q Consensus 230 ----~-~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~l 304 (453)
. ...+++||||+-+. .++-..+.+.-...++.... -...| ...+-..++...+.+.+..-.. ++.++.
T Consensus 405 ~~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP~-GRkpI---~T~~i~~~~~~~v~e~i~~ei~-~GrQaY 477 (677)
T COG1200 405 REKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELPP-GRKPI---TTVVIPHERRPEVYERIREEIA-KGRQAY 477 (677)
T ss_pred HHhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhccCCC-CCCce---EEEEeccccHHHHHHHHHHHHH-cCCEEE
Confidence 4 57899999997554 33334444433333333221 11222 2222233445555555544333 467999
Q ss_pred EEEcchhH--------HHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE
Q psy9620 305 IFAETKRK--------VDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN 374 (453)
Q Consensus 305 VF~~s~~~--------~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 374 (453)
|.|+-.++ |+.++..|... ++.+..+||.|...|+++++++|++|+++|||||.+++.|||+|+.+++|.
T Consensus 478 ~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI 557 (677)
T COG1200 478 VVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI 557 (677)
T ss_pred EEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE
Confidence 99987654 55666667643 567999999999999999999999999999999999999999999999888
Q ss_pred cCCC-CChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHH
Q psy9620 375 FDYP-NNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALA 434 (453)
Q Consensus 375 ~d~p-~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~ 434 (453)
.+.- .-.++..|-.||+||.+..+.|++++.+......++-++++.+...-.--.=.++.
T Consensus 558 e~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLk 618 (677)
T COG1200 558 ENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLK 618 (677)
T ss_pred echhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHh
Confidence 7753 46889999999999999999999999998877778888888877654433333443
No 79
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=1.9e-27 Score=254.16 Aligned_cols=255 Identities=21% Similarity=0.326 Sum_probs=173.4
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcC----CHHHHHHHHHHHHH-hcCCC
Q psy9620 139 IQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAP----TRELAQQIQEVARD-FGSST 213 (453)
Q Consensus 139 ~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P----tr~La~q~~~~~~~-~~~~~ 213 (453)
...+.+..+.+++.++++|+||||||+ ++|.+...... +....+++..| +++||.++.+++.. ++...
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~V 150 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETELGGCV 150 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhccee
Confidence 344566667677888899999999998 58855432211 11224555567 46888888888875 44433
Q ss_pred CceEE------------EEeCCc----------------------cC-C---------------CCCCceEEEEeccCcH
Q psy9620 214 YLRST------------CVYGGA----------------------SK-G---------------PQPDRQVLMWSATWPR 243 (453)
Q Consensus 214 ~~~~~------------~~~gg~----------------------~~-~---------------~~~~~q~v~~SAT~~~ 243 (453)
++.+. +.+.|. .. . ..++.|+|+||||++.
T Consensus 151 GY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~ 230 (1294)
T PRK11131 151 GYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDP 230 (1294)
T ss_pred ceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCCH
Confidence 33221 111000 00 0 0056899999999975
Q ss_pred HHHHHHHHhhccceEEEecccccccCccceeEEEEcccc------chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHH
Q psy9620 244 EVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH------EKENKLFGLLNDISSKDENKTIIFAETKRKVDKIT 317 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~ 317 (453)
+ .+.+.|...++ +.+.... ..+...+...... +....++..+..+.....+.+||||+++.+++.++
T Consensus 231 e--~fs~~F~~apv-I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~la 303 (1294)
T PRK11131 231 E--RFSRHFNNAPI-IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTA 303 (1294)
T ss_pred H--HHHHHcCCCCE-EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHH
Confidence 3 55555544443 4443222 2233333332211 12223333333344445678999999999999999
Q ss_pred HHHHhcCCe---EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC---------------C-
Q psy9620 318 KSIQNYGWA---AVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY---------------P- 378 (453)
Q Consensus 318 ~~L~~~~~~---~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~---------------p- 378 (453)
+.|...++. +..+|++|++.+|..+++. .|..+|||||+++++|||||+|++||++++ |
T Consensus 304 e~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~ 381 (1294)
T PRK11131 304 DALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPI 381 (1294)
T ss_pred HHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCe
Confidence 999987654 7789999999999999986 578999999999999999999999999863 3
Q ss_pred --CChhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 379 --NNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 379 --~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
.|.++|.||+|||||. .+|.||.++++.+..
T Consensus 382 ~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 382 EPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred eecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 4568999999999999 799999999976543
No 80
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.4e-26 Score=236.38 Aligned_cols=268 Identities=17% Similarity=0.193 Sum_probs=176.9
Q ss_pred CCCHHHHHHHHHHh-cC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 135 RPTPIQAQGWPIAM-SG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~-~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
.++|+|.+++..++ ++ +..++++|||+|||++.+..+. .+ +..+|||||+.+|+.||.+++.++..
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l----------~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV----------KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh----------CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 79999999999887 34 4789999999999998765443 22 22499999999999999999998854
Q ss_pred CCCceEEEEeCCccCCC----------------------------------C------------------------CCce
Q psy9620 212 STYLRSTCVYGGASKGP----------------------------------Q------------------------PDRQ 233 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~----------------------------------~------------------------~~~q 233 (453)
.....+..+.|+..... . ....
T Consensus 324 l~~~~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~il~~l~a~~ 403 (732)
T TIGR00603 324 IDDSQICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRVLTIVQAHC 403 (732)
T ss_pred CCCceEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHHHHhcCcCc
Confidence 33333333333211100 0 3345
Q ss_pred EEEEeccCcHHHHH--HHHHhhccceEEEecccccccCcc---ceeEEEEc-----------------------cccchh
Q psy9620 234 VLMWSATWPREVQK--LAEDFLDSYIQINIGSLTLSANHN---IQQVVEVC-----------------------AEHEKE 285 (453)
Q Consensus 234 ~v~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~-----------------------~~~~k~ 285 (453)
.+.+|||+..+-.. .+..++ .+.........+....- ++.....+ ....|.
T Consensus 404 RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~ 482 (732)
T TIGR00603 404 KLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKF 482 (732)
T ss_pred EEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHH
Confidence 78899997532211 111111 12111111111000000 00000000 111222
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEeccCccCC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG-RAGILVATDVAARGL 364 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gi 364 (453)
..+..+++.. .....++||||.+...++.++..| .+.++||.+++.+|..++++|+.+ .+++||+|+++.+||
T Consensus 483 ~~~~~Li~~h-e~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGI 556 (732)
T TIGR00603 483 RACQFLIRFH-EQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSI 556 (732)
T ss_pred HHHHHHHHHH-hhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEeccccccc
Confidence 3333344332 134679999999999999998887 246689999999999999999975 789999999999999
Q ss_pred CCCCCcEEEEcCCC-CChhHHHHhhhcccCCCCcceE-------EEEEcCCCh--HHHHHHHHHHH
Q psy9620 365 DVDDVKFVINFDYP-NNSEDYIHRIGRTGRSDNTGTS-------YTFFTQQNS--RQAKDLIDVLT 420 (453)
Q Consensus 365 Dip~v~~VI~~d~p-~s~~~y~qr~GRagR~g~~g~~-------~~~~~~~~~--~~~~~l~~~l~ 420 (453)
|+|++++||+++.| .|...|+||+||++|.+..+.+ |.|++++.. .+..+-..+|.
T Consensus 557 DlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 557 DLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred CCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 99999999999988 5999999999999999766654 788887643 33334444444
No 81
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.95 E-value=2.5e-26 Score=239.10 Aligned_cols=263 Identities=20% Similarity=0.219 Sum_probs=182.6
Q ss_pred CCCHHHHHHHHHHhcC---CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 135 RPTPIQAQGWPIAMSG---SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g---~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
.+++.|+++++.+.++ +++++.++||||||.+|+.++...+.. +.++|||+||++|+.|+.+.+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~f- 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRARF- 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh-
Confidence 6899999999999874 789999999999999998887766542 5579999999999999999998753
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
+.++..++++.+....
T Consensus 215 --g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~ 292 (679)
T PRK05580 215 --GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKL 292 (679)
T ss_pred --CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhc
Confidence 3456666665432110
Q ss_pred CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcccc------chhhhHHHHHHhhhcCCCCcE
Q psy9620 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH------EKENKLFGLLNDISSKDENKT 303 (453)
Q Consensus 230 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~~ll~~~~~~~~~~~ 303 (453)
.+.+++++|||++.+....+.. .....+................+.+.... .-...+.+.+++.. ..+.++
T Consensus 293 ~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l-~~g~qv 369 (679)
T PRK05580 293 ENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL-ERGEQV 369 (679)
T ss_pred cCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH-HcCCeE
Confidence 4578999999977554443321 12222222211100101111111111100 01123334444332 235589
Q ss_pred EEEEcchh------------------------------------------------------------HHHHHHHHHHhc
Q psy9620 304 IIFAETKR------------------------------------------------------------KVDKITKSIQNY 323 (453)
Q Consensus 304 lVF~~s~~------------------------------------------------------------~~~~l~~~L~~~ 323 (453)
|||+|++. .++++++.|.+.
T Consensus 370 ll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~ 449 (679)
T PRK05580 370 LLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAEL 449 (679)
T ss_pred EEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHh
Confidence 99988631 356888888775
Q ss_pred --CCeEEEEcCCCC--HHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE--cCCCCCh----------hHHHHh
Q psy9620 324 --GWAAVGIHGDKS--QQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN--FDYPNNS----------EDYIHR 387 (453)
Q Consensus 324 --~~~~~~~h~~~~--~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--~d~p~s~----------~~y~qr 387 (453)
+.++..+|+++. ..+++.++++|++|+.+|||+|+++++|+|+|+|++|+. .|.+.+. ..|+|+
T Consensus 450 fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~ 529 (679)
T PRK05580 450 FPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQV 529 (679)
T ss_pred CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHH
Confidence 788999999987 467899999999999999999999999999999999854 4544433 568999
Q ss_pred hhcccCCCCcceEEEEEcCCChHH
Q psy9620 388 IGRTGRSDNTGTSYTFFTQQNSRQ 411 (453)
Q Consensus 388 ~GRagR~g~~g~~~~~~~~~~~~~ 411 (453)
+||+||.+..|.+++.....+...
T Consensus 530 ~GRagR~~~~g~viiqT~~p~~~~ 553 (679)
T PRK05580 530 AGRAGRAEKPGEVLIQTYHPEHPV 553 (679)
T ss_pred HhhccCCCCCCEEEEEeCCCCCHH
Confidence 999999999999998776554333
No 82
>KOG0951|consensus
Probab=99.95 E-value=1.7e-26 Score=236.96 Aligned_cols=294 Identities=17% Similarity=0.236 Sum_probs=219.4
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCC---CCCcEEEEEcC
Q psy9620 119 NFPDYVLKEVKRQGFDRPTPIQAQGWPIAMS-GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKP---GDGPIVLVLAP 194 (453)
Q Consensus 119 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~---~~~~~vlil~P 194 (453)
.+|++-..++. |...++.+|....++++. ..++++|||||+|||..+++-+|+.+........ -...++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 46666655554 566799999999999886 4689999999999999999999998876544221 12447999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------------
Q psy9620 195 TRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------------- 229 (453)
Q Consensus 195 tr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------------- 229 (453)
+++|++.+...+.+.....+++|..++|+.....+
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDd 452 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDD 452 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccc
Confidence 99999999999999888999999999998654332
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHH
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 289 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 289 (453)
....++.+|||+|. ..+.+..+..++..+...... -.+..++|.+.-+.+.....++.
T Consensus 453 RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~glf~fd~s-yRpvPL~qq~Igi~ek~~~~~~q 530 (1674)
T KOG0951|consen 453 RGPVLESIVARTFRRSESTEEGSRLVGLSATLPN-YEDVASFLRVDPEGLFYFDSS-YRPVPLKQQYIGITEKKPLKRFQ 530 (1674)
T ss_pred cchHHHHHHHHHHHHhhhcccCceeeeecccCCc-hhhhHHHhccCcccccccCcc-cCcCCccceEeccccCCchHHHH
Confidence 46789999999964 556655555555333333222 23345566665555544443322
Q ss_pred HHHH----hh-hcCCCCcEEEEEcchhHHHHHHHHHHh-------------------------------------cCCeE
Q psy9620 290 GLLN----DI-SSKDENKTIIFAETKRKVDKITKSIQN-------------------------------------YGWAA 327 (453)
Q Consensus 290 ~ll~----~~-~~~~~~~~lVF~~s~~~~~~l~~~L~~-------------------------------------~~~~~ 327 (453)
.+-+ ++ ....++++||||.+++++.+.|+.++. ..+.+
T Consensus 531 amNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygf 610 (1674)
T KOG0951|consen 531 AMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGF 610 (1674)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccc
Confidence 2211 11 123457999999999999988888873 13457
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cCC------CCChhHHHHhhhcccCCCCc
Q psy9620 328 VGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FDY------PNNSEDYIHRIGRTGRSDNT 397 (453)
Q Consensus 328 ~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~------p~s~~~y~qr~GRagR~g~~ 397 (453)
+++|++|+..+|..+.+.|++|.++|||+|..++||+++|+.+++|- ||+ +.++.+.+||.|||||.+.+
T Consensus 611 aIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D 690 (1674)
T KOG0951|consen 611 AIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYD 690 (1674)
T ss_pred eeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccC
Confidence 89999999999999999999999999999999999999999998884 554 45788999999999999654
Q ss_pred --ceEEEEEcCCChHHHHHHH
Q psy9620 398 --GTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 398 --g~~~~~~~~~~~~~~~~l~ 416 (453)
|..++.....+......++
T Consensus 691 ~~gegiiit~~se~qyyls~m 711 (1674)
T KOG0951|consen 691 TCGEGIIITDHSELQYYLSLM 711 (1674)
T ss_pred cCCceeeccCchHhhhhHHhh
Confidence 5666666555555444433
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=4.9e-25 Score=231.21 Aligned_cols=293 Identities=19% Similarity=0.233 Sum_probs=188.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCC
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSST 213 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~ 213 (453)
..|+|+|+.+........-+|+.||||+|||.++++++...+... ....++|..||+++++|+++.+.++....
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~------~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG------LADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------CCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 389999998865544566789999999999999877665433221 23469999999999999999887532211
Q ss_pred --CceEEEEeCCccC------------------------------C-CC-------------------------------
Q psy9620 214 --YLRSTCVYGGASK------------------------------G-PQ------------------------------- 229 (453)
Q Consensus 214 --~~~~~~~~gg~~~------------------------------~-~~------------------------------- 229 (453)
...+..++|.... . ..
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 2345555543210 0 00
Q ss_pred ------------------------------CCceEEEEeccCcHHHHHH-HHHhhcc-c-------eEEEec------cc
Q psy9620 230 ------------------------------PDRQVLMWSATWPREVQKL-AEDFLDS-Y-------IQINIG------SL 264 (453)
Q Consensus 230 ------------------------------~~~q~v~~SAT~~~~~~~~-~~~~~~~-~-------~~~~~~------~~ 264 (453)
....+|+||||+|...++. .+.+-.. . ..+... ..
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~ 518 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRF 518 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceee
Confidence 4568999999999877643 3333111 0 000000 00
Q ss_pred ccccC---ccceeEEEE--c--cccchhhhHH-HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcC---CeEEEEcCC
Q psy9620 265 TLSAN---HNIQQVVEV--C--AEHEKENKLF-GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG---WAAVGIHGD 333 (453)
Q Consensus 265 ~~~~~---~~i~~~~~~--~--~~~~k~~~l~-~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---~~~~~~h~~ 333 (453)
..... ......+.+ . ........++ .+++.+ ...+++||||||++.|+.+++.|++.. ..+..+|+.
T Consensus 519 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 519 DLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 00000 001111111 1 1111112222 333332 245689999999999999999999764 679999999
Q ss_pred CCHHHH----HHHHHHH-hcCC---CcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc----c---
Q psy9620 334 KSQQER----DYVLKEF-RNGR---AGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT----G--- 398 (453)
Q Consensus 334 ~~~~~r----~~~~~~f-~~g~---~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~----g--- 398 (453)
++..+| .++++.| ++++ ..|||||+++++|||| +++++|....| ++.++||+||++|.+.. |
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~~rp~~~~~ 673 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRKYRPAGFEI 673 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCCCCCCCCcC
Confidence 999999 4577788 6666 4799999999999999 68999998888 88999999999998642 2
Q ss_pred -eEEEEEcCC-----------ChHHHHHHHHHHHhcC---CCCChHHHHHHhhc
Q psy9620 399 -TSYTFFTQQ-----------NSRQAKDLIDVLTESN---HPVDPKLSALASRS 437 (453)
Q Consensus 399 -~~~~~~~~~-----------~~~~~~~l~~~l~~~~---~~v~~~l~~~~~~~ 437 (453)
.++++..+. +...+..-.++|++.+ ..+|+.+..+.+..
T Consensus 674 p~~~V~~p~~~~~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~P~~~~~lve~v 727 (878)
T PRK09694 674 PVATVLLPDGEGYGRSGYIYGNTRVLWRTEQLLEEHNAASLFFPDAYREWIESV 727 (878)
T ss_pred ceEEEEeccccccCCceeecCchHHHHHHHHHHHhcCCCCcCChHHHHHHHHHH
Confidence 344442221 1112223335566654 56788888877654
No 84
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.5e-26 Score=234.00 Aligned_cols=260 Identities=18% Similarity=0.210 Sum_probs=199.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|.-+.-++..|+ |+.+.||+|||+++.+|++..... |..|-|++||.-||.|-++++..+..
T Consensus 78 g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~ 146 (796)
T PRK12906 78 GL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYR 146 (796)
T ss_pred CC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHH
Confidence 55 89999988887777777 999999999999999999877664 55599999999999999999999999
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
.+++++.++.++.+....
T Consensus 147 ~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 147 WLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred hcCCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 999999998776433211
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 230 -------------------------------------------------------------------------------- 229 (453)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (453)
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------------------CCceEEEEeccCc
Q psy9620 230 -------------------------------------------------------------------PDRQVLMWSATWP 242 (453)
Q Consensus 230 -------------------------------------------------------------------~~~q~v~~SAT~~ 242 (453)
.-.++..||.|..
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 1124455666665
Q ss_pred HHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHh
Q psy9620 243 REVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN 322 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~ 322 (453)
.+..++.+.|-.+.+.+ .... +....-.....+....+|...+...+.... ....|+||||+|+..++.++..|.+
T Consensus 387 ~e~~Ef~~iY~l~vv~I--Ptnk-p~~r~d~~d~i~~t~~~K~~al~~~i~~~~-~~g~pvLI~t~si~~se~ls~~L~~ 462 (796)
T PRK12906 387 TEEEEFREIYNMEVITI--PTNR-PVIRKDSPDLLYPTLDSKFNAVVKEIKERH-AKGQPVLVGTVAIESSERLSHLLDE 462 (796)
T ss_pred HHHHHHHHHhCCCEEEc--CCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 44444433333332221 1111 000001111233344556666666665543 3567999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC---CCc-----EEEEcCCCCChhHHHHhhhcccCC
Q psy9620 323 YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD---DVK-----FVINFDYPNNSEDYIHRIGRTGRS 394 (453)
Q Consensus 323 ~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip---~v~-----~VI~~d~p~s~~~y~qr~GRagR~ 394 (453)
.++++..+|+.+.+.|+..+...++.|. |+|||++++||+||+ +|. |||+++.|.|...|.|++|||||.
T Consensus 463 ~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRq 540 (796)
T PRK12906 463 AGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQ 540 (796)
T ss_pred CCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccC
Confidence 9999999999988777777777777766 999999999999994 899 999999999999999999999999
Q ss_pred CCcceEEEEEcCCC
Q psy9620 395 DNTGTSYTFFTQQN 408 (453)
Q Consensus 395 g~~g~~~~~~~~~~ 408 (453)
|.+|.+..|++.+|
T Consensus 541 G~~G~s~~~~sleD 554 (796)
T PRK12906 541 GDPGSSRFYLSLED 554 (796)
T ss_pred CCCcceEEEEeccc
Confidence 99999999999876
No 85
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=1.6e-25 Score=240.27 Aligned_cols=262 Identities=18% Similarity=0.284 Sum_probs=175.1
Q ss_pred CCCCCCHHH---HHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 132 GFDRPTPIQ---AQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 132 g~~~~~~~Q---~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
.|...-|+. .+.+..+.+++.+|++|+||||||. ++|.+..-... +...+++++.|.|.-|..++..+.+
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~ 133 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAE 133 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHH
Confidence 344444443 3455566677888999999999997 56765432211 1233577788999888877765554
Q ss_pred -hcCCCCceEEE----------------EeCCccC-----CC---------------------------------CCCce
Q psy9620 209 -FGSSTYLRSTC----------------VYGGASK-----GP---------------------------------QPDRQ 233 (453)
Q Consensus 209 -~~~~~~~~~~~----------------~~gg~~~-----~~---------------------------------~~~~q 233 (453)
++...+..+.. ++.|.-. +. .++.|
T Consensus 134 elg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLK 213 (1283)
T TIGR01967 134 ELGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLK 213 (1283)
T ss_pred HhCCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCe
Confidence 33222222221 1111000 00 06789
Q ss_pred EEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc------cchhhhHHHHHHhhhcCCCCcEEEEE
Q psy9620 234 VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE------HEKENKLFGLLNDISSKDENKTIIFA 307 (453)
Q Consensus 234 ~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~ll~~~~~~~~~~~lVF~ 307 (453)
+|+||||++. ..+.+.|...++ +.+..... .+...+..... .++...+...+..+.....+.+|||+
T Consensus 214 lIlmSATld~--~~fa~~F~~apv-I~V~Gr~~----PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFL 286 (1283)
T TIGR01967 214 IIITSATIDP--ERFSRHFNNAPI-IEVSGRTY----PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFL 286 (1283)
T ss_pred EEEEeCCcCH--HHHHHHhcCCCE-EEECCCcc----cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeC
Confidence 9999999974 455555544443 33332221 12222222111 12334445555555444567999999
Q ss_pred cchhHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCC------
Q psy9620 308 ETKRKVDKITKSIQNYG---WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYP------ 378 (453)
Q Consensus 308 ~s~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p------ 378 (453)
+++.+++.+++.|...+ +.+..+||+|++.+|..+++.+ +..+|||||+++++|||||+|++||+++++
T Consensus 287 pg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd 364 (1283)
T TIGR01967 287 PGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYS 364 (1283)
T ss_pred CCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccc
Confidence 99999999999998764 4688999999999999997654 347999999999999999999999998854
Q ss_pred ------------CChhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 379 ------------NNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 379 ------------~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
.|.++|.||+|||||.+ +|.||.++++++..
T Consensus 365 ~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 365 YRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred cccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 35689999999999996 99999999976543
No 86
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.2e-24 Score=218.65 Aligned_cols=241 Identities=21% Similarity=0.251 Sum_probs=161.4
Q ss_pred EEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC----
Q psy9620 154 VGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ---- 229 (453)
Q Consensus 154 li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---- 229 (453)
|+.|+||||||.+|+..+...+. .+.++|||+|+++|+.|+.+.+++.+ +.++..++++.+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~--------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA--------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 47899999999999766544442 35579999999999999999998753 3455566655432110
Q ss_pred ----------------------------------------------------------CCceEEEEeccCcHHHHHHHHH
Q psy9620 230 ----------------------------------------------------------PDRQVLMWSATWPREVQKLAED 251 (453)
Q Consensus 230 ----------------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~ 251 (453)
.+.++|++|||+..+....+.
T Consensus 70 ~~~~~g~~~IVVGTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~- 148 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAK- 148 (505)
T ss_pred HHHHcCCCCEEECChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHh-
Confidence 468899999996654433322
Q ss_pred hhccceEEEecccccccCccceeEEEEcccc---chhhhHHHHHHhhhcCCCCcEEEEEcchhH----------------
Q psy9620 252 FLDSYIQINIGSLTLSANHNIQQVVEVCAEH---EKENKLFGLLNDISSKDENKTIIFAETKRK---------------- 312 (453)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~---------------- 312 (453)
......+..............+.+.+..+. .-...+++.+.+... .+.++|||+|++..
T Consensus 149 -~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~-~g~qvLvflnrrGya~~~~C~~Cg~~~~C~ 226 (505)
T TIGR00595 149 -QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA-AGEQSILFLNRRGYSKNLLCRSCGYILCCP 226 (505)
T ss_pred -cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH-cCCcEEEEEeCCcCCCeeEhhhCcCccCCC
Confidence 112222222111111111111122211111 011234444444332 35689999887643
Q ss_pred --------------------------------------------HHHHHHHHHhc--CCeEEEEcCCCCHHHH--HHHHH
Q psy9620 313 --------------------------------------------VDKITKSIQNY--GWAAVGIHGDKSQQER--DYVLK 344 (453)
Q Consensus 313 --------------------------------------------~~~l~~~L~~~--~~~~~~~h~~~~~~~r--~~~~~ 344 (453)
++++.+.|.+. +..+..+|++++..++ +.+++
T Consensus 227 ~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~ 306 (505)
T TIGR00595 227 NCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLN 306 (505)
T ss_pred CCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHH
Confidence 47888888876 7789999999987766 89999
Q ss_pred HHhcCCCcEEEEeccCccCCCCCCCcEEE--EcCCCCC----------hhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 345 EFRNGRAGILVATDVAARGLDVDDVKFVI--NFDYPNN----------SEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 345 ~f~~g~~~vLvaT~~~~~GiDip~v~~VI--~~d~p~s----------~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
+|++|+.+|||+|+++++|+|+|+|++|+ ++|...+ ...|+|++||+||.++.|.+++.....+
T Consensus 307 ~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 307 QFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 99999999999999999999999999875 5554222 4568999999999999999987654443
No 87
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.93 E-value=1.8e-23 Score=220.87 Aligned_cols=123 Identities=19% Similarity=0.272 Sum_probs=107.8
Q ss_pred CCCcEEEEEcchhHHHHHHHHHH-hcCCeEEEEcCCCCHHHHHHHHHHHhcC--CCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQ-NYGWAAVGIHGDKSQQERDYVLKEFRNG--RAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
...|+||||+++..++.+++.|+ ..|+.+..+||+|++.+|..+++.|+++ .++|||||+++++|+|++.+++||+|
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInf 571 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLF 571 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEe
Confidence 46799999999999999999995 5699999999999999999999999984 59999999999999999999999999
Q ss_pred CCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHh
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTE 421 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 421 (453)
|+|+|+..|.||+||++|.|+.+.+.+++..........+.+.+.+
T Consensus 572 DlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 572 DLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred cCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 9999999999999999999999887666665444444455554444
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=4.4e-23 Score=214.87 Aligned_cols=283 Identities=19% Similarity=0.207 Sum_probs=215.5
Q ss_pred CHHHHHHHHH-CCCCCCCHHHHHHHHHHhc----CC--cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 121 PDYVLKEVKR-QGFDRPTPIQAQGWPIAMS----GS--NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 121 ~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~----g~--d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
+..+.+.+.+ +.| ..|+-|..||..+.+ ++ |-|+|+.-|.|||.+++-+++..++. |+.|.|||
T Consensus 580 d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvLV 650 (1139)
T COG1197 580 DTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVLV 650 (1139)
T ss_pred ChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEEc
Confidence 3444444443 355 789999999998874 44 77999999999999999999888764 67799999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------------
Q psy9620 194 PTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------------- 229 (453)
Q Consensus 194 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------- 229 (453)
||--||+|.++.+++.+.+.++++..+.--.+...+
T Consensus 651 PTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGV 730 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGV 730 (1139)
T ss_pred ccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCc
Confidence 999999999999999999999988876543332222
Q ss_pred ----------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCC
Q psy9620 230 ----------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKD 299 (453)
Q Consensus 230 ----------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 299 (453)
.+..++-+|||+-+....++-.-+++...+...+.. ...++ .++.+.+....-..+++++. .
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~---R~pV~---T~V~~~d~~~ireAI~REl~--R 802 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED---RLPVK---TFVSEYDDLLIREAILRELL--R 802 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC---CcceE---EEEecCChHHHHHHHHHHHh--c
Confidence 677899999998776666666666665444332221 11222 22233333333334555553 3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY 377 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 377 (453)
++++-..+|..+..+.++..|++. ...+.+.||-|+..+-+.++..|-+|+.+|||||.+++.|||||+++.+|.-+.
T Consensus 803 gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~A 882 (1139)
T COG1197 803 GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERA 882 (1139)
T ss_pred CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecc
Confidence 679999999999999999999986 667899999999999999999999999999999999999999999999886554
Q ss_pred C-CChhHHHHhhhcccCCCCcceEEEEEcCCC--hHHHHHHHHHHH
Q psy9620 378 P-NNSEDYIHRIGRTGRSDNTGTSYTFFTQQN--SRQAKDLIDVLT 420 (453)
Q Consensus 378 p-~s~~~y~qr~GRagR~g~~g~~~~~~~~~~--~~~~~~l~~~l~ 420 (453)
- .-.++..|..||+||.+..+.||+++.+.+ ...+.+-++.++
T Consensus 883 D~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~ 928 (1139)
T COG1197 883 DKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIA 928 (1139)
T ss_pred ccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHH
Confidence 3 468999999999999999999999998643 233444344443
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.1e-23 Score=216.80 Aligned_cols=127 Identities=14% Similarity=0.208 Sum_probs=108.8
Q ss_pred ccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 279 CAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 279 ~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
....+|...+.+.+..+. ....|+||||+|+..++.++..|...++++..+|+.+.+.|+..+.+.|+.|. |+|||+
T Consensus 424 ~t~~~k~~av~~~i~~~~-~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATN 500 (896)
T PRK13104 424 LTQADKFQAIIEDVRECG-VRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATN 500 (896)
T ss_pred cCHHHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEecc
Confidence 344556666665555443 35779999999999999999999999999999999999999999999999994 999999
Q ss_pred cCccCCCCCC---------------------------------C-----cEEEEcCCCCChhHHHHhhhcccCCCCcceE
Q psy9620 359 VAARGLDVDD---------------------------------V-----KFVINFDYPNNSEDYIHRIGRTGRSDNTGTS 400 (453)
Q Consensus 359 ~~~~GiDip~---------------------------------v-----~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~ 400 (453)
+++||+||.= | -|||-...+.|..-=.|-.||+||.|.+|.+
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999999861 1 2788888888888889999999999999999
Q ss_pred EEEEcCCC
Q psy9620 401 YTFFTQQN 408 (453)
Q Consensus 401 ~~~~~~~~ 408 (453)
-.|++-+|
T Consensus 581 ~f~lSleD 588 (896)
T PRK13104 581 RFYLSLED 588 (896)
T ss_pred EEEEEcCc
Confidence 99998766
No 90
>KOG0948|consensus
Probab=99.92 E-value=2.8e-24 Score=210.94 Aligned_cols=257 Identities=18% Similarity=0.252 Sum_probs=192.1
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY 214 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~ 214 (453)
.+.|+|..+|..+-+++++|+.|.|.+|||.++..++...+.. .-+||+.+|-++|.+|-++++..-+..
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~D-- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKD-- 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcc--
Confidence 7899999999999999999999999999999999988887765 335999999999999999988775543
Q ss_pred ceEEEEeCCccCCCC-----------------------------------------------------CCceEEEEeccC
Q psy9620 215 LRSTCVYGGASKGPQ-----------------------------------------------------PDRQVLMWSATW 241 (453)
Q Consensus 215 ~~~~~~~gg~~~~~~-----------------------------------------------------~~~q~v~~SAT~ 241 (453)
+...+|+....+. .+...+++|||+
T Consensus 199 --VGLMTGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 199 --VGLMTGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred --cceeecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccC
Confidence 3444555444433 567899999999
Q ss_pred cHHHHHHHHHhh---ccceEEEecccccccCccceeEE---------EEcccc-----ch--------------------
Q psy9620 242 PREVQKLAEDFL---DSYIQINIGSLTLSANHNIQQVV---------EVCAEH-----EK-------------------- 284 (453)
Q Consensus 242 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~---------~~~~~~-----~k-------------------- 284 (453)
|. ..++++|.+ ..|.++....... -.+++++ .++.+. +.
T Consensus 277 PN-A~qFAeWI~~ihkQPcHVVYTdyRP---TPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~ 352 (1041)
T KOG0948|consen 277 PN-ARQFAEWICHIHKQPCHVVYTDYRP---TPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKA 352 (1041)
T ss_pred CC-HHHHHHHHHHHhcCCceEEeecCCC---CcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccc
Confidence 75 456677765 3455444332221 1122221 111110 00
Q ss_pred ---------------hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCC------------------------
Q psy9620 285 ---------------ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW------------------------ 325 (453)
Q Consensus 285 ---------------~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~------------------------ 325 (453)
...+..+++.+...+-.|+|||+-++++|+.+|-.|....+
T Consensus 353 ~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeD 432 (1041)
T KOG0948|consen 353 NKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEED 432 (1041)
T ss_pred ccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhh
Confidence 11344455555555566999999999999999988865322
Q ss_pred ---------------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cCC----CCChh
Q psy9620 326 ---------------AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FDY----PNNSE 382 (453)
Q Consensus 326 ---------------~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~----p~s~~ 382 (453)
.+.++|+++-+--++.+.-.|.+|-+++|+||.+++.|+|.|+-++|+- ||= .-|.-
T Consensus 433 r~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissG 512 (1041)
T KOG0948|consen 433 RELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSG 512 (1041)
T ss_pred ccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeeccc
Confidence 2678999999999999999999999999999999999999999887773 331 13567
Q ss_pred HHHHhhhcccCCCC--cceEEEEEcCC
Q psy9620 383 DYIHRIGRTGRSDN--TGTSYTFFTQQ 407 (453)
Q Consensus 383 ~y~qr~GRagR~g~--~g~~~~~~~~~ 407 (453)
+|+||.|||||.|. .|.||+++++.
T Consensus 513 EYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 513 EYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ceEEecccccccCCCCCceEEEEecCc
Confidence 89999999999985 48999999875
No 91
>KOG0947|consensus
Probab=99.92 E-value=1.7e-23 Score=210.36 Aligned_cols=260 Identities=18% Similarity=0.216 Sum_probs=189.8
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..| +|..+|++||-++..|.++++.|+|.+|||+++..++..... .+.++++.+|-++|.+|-++.|+.-+
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~--------h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK--------HMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh--------hccceEecchhhhhccchHHHHHHhc
Confidence 355 899999999999999999999999999999998877764433 35679999999999999999998865
Q ss_pred CCCCceEEEEeCCccCCCC-----------------------------------------------------CCceEEEE
Q psy9620 211 SSTYLRSTCVYGGASKGPQ-----------------------------------------------------PDRQVLMW 237 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~~~~~-----------------------------------------------------~~~q~v~~ 237 (453)
...+ .++|+....+. ...++|++
T Consensus 365 ~Dvg----LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlL 440 (1248)
T KOG0947|consen 365 GDVG----LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILL 440 (1248)
T ss_pred cccc----eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEE
Confidence 4433 56666655544 67899999
Q ss_pred eccCcHHHHHHHHHhhc---cceEEEecccccccCccceeEEEE--------------------------------cc--
Q psy9620 238 SATWPREVQKLAEDFLD---SYIQINIGSLTLSANHNIQQVVEV--------------------------------CA-- 280 (453)
Q Consensus 238 SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~--------------------------------~~-- 280 (453)
|||.|... +++.|... ..+.+.-.. ..+..+.+++.. ..
T Consensus 441 SATVPN~~-EFA~WIGRtK~K~IyViST~---kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~ 516 (1248)
T KOG0947|consen 441 SATVPNTL-EFADWIGRTKQKTIYVISTS---KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVE 516 (1248)
T ss_pred eccCCChH-HHHHHhhhccCceEEEEecC---CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccc
Confidence 99997644 56666542 222211110 000000000000 00
Q ss_pred -----------------------------ccchh--hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcC-----
Q psy9620 281 -----------------------------EHEKE--NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG----- 324 (453)
Q Consensus 281 -----------------------------~~~k~--~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~----- 324 (453)
...+. ...+.+++.+...+.-|+||||-+++.|++.+++|...+
T Consensus 517 ~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~ 596 (1248)
T KOG0947|consen 517 KSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSK 596 (1248)
T ss_pred cccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccch
Confidence 00011 246777777766566699999999999999999997521
Q ss_pred ----------------------------------CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 325 ----------------------------------WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 325 ----------------------------------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
-.+++|||++-+--++-|+..|..|-++||+||.++++|+|.|+-.
T Consensus 597 EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARt 676 (1248)
T KOG0947|consen 597 EKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPART 676 (1248)
T ss_pred hHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCcee
Confidence 1367899999999999999999999999999999999999999988
Q ss_pred EEEEc----C----CCCChhHHHHhhhcccCCCC--cceEEEEEcCC
Q psy9620 371 FVINF----D----YPNNSEDYIHRIGRTGRSDN--TGTSYTFFTQQ 407 (453)
Q Consensus 371 ~VI~~----d----~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~ 407 (453)
+|+.- | .-..+-+|.||+|||||.|- .|.++++....
T Consensus 677 vVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 677 VVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred EEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 77741 1 11357899999999999974 57777776654
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.5e-23 Score=215.70 Aligned_cols=260 Identities=19% Similarity=0.193 Sum_probs=201.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|.-..-++..|+ |+.++||+|||+++.+|++..... +..|-|++||..||.|.++++..+..
T Consensus 79 g~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 79 GM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred CC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHh
Confidence 55 89999988887777776 899999999999999999643332 33477999999999999999999999
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
..++++.++.++.+...+
T Consensus 148 ~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~ 227 (830)
T PRK12904 148 FLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGP 227 (830)
T ss_pred hcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECC
Confidence 999999999887543321
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 230 -------------------------------------------------------------------------------- 229 (453)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (453)
T Consensus 228 ~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dY 307 (830)
T PRK12904 228 AEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDY 307 (830)
T ss_pred CCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence
Q ss_pred --------------------------------------------------------CCceEEEEeccCcHHHHHHHHHhh
Q psy9620 230 --------------------------------------------------------PDRQVLMWSATWPREVQKLAEDFL 253 (453)
Q Consensus 230 --------------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~ 253 (453)
.-.++..||.|...+..++.+.|-
T Consensus 308 iV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 387 (830)
T PRK12904 308 IVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYN 387 (830)
T ss_pred EEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhC
Confidence 123556777887666555555554
Q ss_pred ccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCC
Q psy9620 254 DSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD 333 (453)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~ 333 (453)
.+.+.+....+ ....-.....+....+|...+.+.+.... ....|+||||+|+..++.++..|...++++..+|+.
T Consensus 388 l~vv~IPtnkp---~~r~d~~d~i~~t~~~K~~aI~~~I~~~~-~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak 463 (830)
T PRK12904 388 LDVVVIPTNRP---MIRIDHPDLIYKTEKEKFDAVVEDIKERH-KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK 463 (830)
T ss_pred CCEEEcCCCCC---eeeeeCCCeEEECHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc
Confidence 44333221111 00111112233445567777777665543 346799999999999999999999999999999995
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC--------------------------------------cEEEEc
Q psy9620 334 KSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDV--------------------------------------KFVINF 375 (453)
Q Consensus 334 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v--------------------------------------~~VI~~ 375 (453)
+.+|+..+..|+.+...|+|||++++||+||+=- -|||-.
T Consensus 464 --q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigT 541 (830)
T PRK12904 464 --NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGT 541 (830)
T ss_pred --hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEec
Confidence 8899999999999999999999999999999642 279998
Q ss_pred CCCCChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
..|.|..-=.|-.||+||.|.+|.+-.|++-+|
T Consensus 542 erhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 542 ERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred ccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 899999999999999999999999999998766
No 93
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.92 E-value=2.9e-23 Score=206.30 Aligned_cols=247 Identities=25% Similarity=0.273 Sum_probs=164.4
Q ss_pred CCCHHHHHHHHHHhc----CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPIAMS----GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~----g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.++++|++++..+.. .+..++++|||+|||++++..+... ...+||||||++|+.|+.+.+....
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----------KRSTLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----------cCCEEEEECcHHHHHHHHHHHHHhc
Confidence 799999999999987 8899999999999998875544332 2229999999999999987766654
Q ss_pred CCCCceEEEEeCCccCCC------------------------C------------------------CCce-EEEEeccC
Q psy9620 211 SSTYLRSTCVYGGASKGP------------------------Q------------------------PDRQ-VLMWSATW 241 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~~~~------------------------~------------------------~~~q-~v~~SAT~ 241 (453)
... ..+..+.++..... . .... ++.+|||+
T Consensus 105 ~~~-~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~~LGLTATp 183 (442)
T COG1061 105 LLN-DEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYPRLGLTATP 183 (442)
T ss_pred CCc-cccceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcccceeeeccCc
Confidence 321 01111111110000 0 2333 89999997
Q ss_pred cHHHHHHHHHhhc--cceEEEecccccccCcc---ceeEEEEc--cc---------------------------------
Q psy9620 242 PREVQKLAEDFLD--SYIQINIGSLTLSANHN---IQQVVEVC--AE--------------------------------- 281 (453)
Q Consensus 242 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---i~~~~~~~--~~--------------------------------- 281 (453)
+..-......+.. .++.......+...... ........ ..
T Consensus 184 ~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (442)
T COG1061 184 EREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIA 263 (442)
T ss_pred eeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 6332111111111 11222211111100000 00000000 00
Q ss_pred cchhhhHHHHHHhhhcC-CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 282 HEKENKLFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
......+..+...+... ...++||||.+..+++.++..|...+. +..+++..+..+|+.+++.|+.|..++||++.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl 342 (442)
T COG1061 264 IASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVL 342 (442)
T ss_pred hccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeec
Confidence 00001111111111111 356999999999999999999998888 8899999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC
Q psy9620 361 ARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS 394 (453)
Q Consensus 361 ~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~ 394 (453)
.+|+|+|+++++|......|...|+||+||.-|.
T Consensus 343 ~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 343 DEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred cceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999994
No 94
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.91 E-value=1e-21 Score=177.65 Aligned_cols=270 Identities=17% Similarity=0.206 Sum_probs=185.0
Q ss_pred CCCCHHHHHHHHHHh----cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 134 DRPTPIQAQGWPIAM----SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.++++.|+.+-..+. +.+++|+.|-||+|||... ++.++.... .|.++.+.+|....|..++..++.-
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~-------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN-------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh-------cCCeEEEecCcccchHHHHHHHHHh
Confidence 379999998876554 5789999999999999763 444444443 4778999999999999999999887
Q ss_pred cCCCCceEEEEeCCccCCCC----------------------------------------------CCceEEEEeccCcH
Q psy9620 210 GSSTYLRSTCVYGGASKGPQ----------------------------------------------PDRQVLMWSATWPR 243 (453)
Q Consensus 210 ~~~~~~~~~~~~gg~~~~~~----------------------------------------------~~~q~v~~SAT~~~ 243 (453)
+. +..+.+++|+.+...+ ..--+|.+|||.++
T Consensus 168 F~--~~~I~~Lyg~S~~~fr~plvVaTtHQLlrFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k 245 (441)
T COG4098 168 FS--NCDIDLLYGDSDSYFRAPLVVATTHQLLRFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTK 245 (441)
T ss_pred hc--cCCeeeEecCCchhccccEEEEehHHHHHHHhhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChH
Confidence 54 3567788887665443 45568999999988
Q ss_pred HHHHHHHHhhccceEEEecccccccCccceeEEEEccccch-------hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHH
Q psy9620 244 EVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEK-------ENKLFGLLNDISSKDENKTIIFAETKRKVDKI 316 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k-------~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l 316 (453)
.++..+..- +...+.+.......+..+..++ ++....| ..+|..+|+.-. ....+++||+++....+.+
T Consensus 246 ~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~-w~~~~~k~l~r~kl~~kl~~~lekq~-~~~~P~liF~p~I~~~eq~ 321 (441)
T COG4098 246 KLERKILKG--NLRILKLPARFHGKPLPVPKFV-WIGNWNKKLQRNKLPLKLKRWLEKQR-KTGRPVLIFFPEIETMEQV 321 (441)
T ss_pred HHHHHhhhC--CeeEeecchhhcCCCCCCCceE-EeccHHHHhhhccCCHHHHHHHHHHH-hcCCcEEEEecchHHHHHH
Confidence 766543322 2222333222222222222222 2222211 124445554432 3457999999999999999
Q ss_pred HHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCC--CChhHHHHhhhccc
Q psy9620 317 TKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYP--NNSEDYIHRIGRTG 392 (453)
Q Consensus 317 ~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p--~s~~~y~qr~GRag 392 (453)
+..|+.. ...+..+|+ ....|.+..++|++|+++|||+|.+++||+.+|+|++++.-.-- .+.+..+|.+||+|
T Consensus 322 a~~lk~~~~~~~i~~Vhs--~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvG 399 (441)
T COG4098 322 AAALKKKLPKETIASVHS--EDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVG 399 (441)
T ss_pred HHHHHhhCCccceeeeec--cCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhcc
Confidence 9999543 345578888 45688899999999999999999999999999999976643322 56888999999999
Q ss_pred CCC--CcceEEEEEcCCChHHHHHHHHHHH
Q psy9620 393 RSD--NTGTSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 393 R~g--~~g~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
|.- .+|..+.| .......+.+....++
T Consensus 400 Rs~~~PtGdv~FF-H~G~skaM~~A~keIk 428 (441)
T COG4098 400 RSLERPTGDVLFF-HYGKSKAMKQARKEIK 428 (441)
T ss_pred CCCcCCCCcEEEE-eccchHHHHHHHHHHH
Confidence 983 33554444 4444444444343333
No 95
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.91 E-value=3.9e-22 Score=190.07 Aligned_cols=168 Identities=19% Similarity=0.288 Sum_probs=127.9
Q ss_pred CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcc
Q psy9620 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAET 309 (453)
Q Consensus 230 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s 309 (453)
...|+|++|||+.+.-.+... .+.+.-.+.+- ..+...+.+-+.....+.|+.-+..... .+.++||-+-|
T Consensus 385 ~~~q~i~VSATPg~~E~e~s~---~~vveQiIRPT-----GLlDP~ievRp~~~QvdDL~~EI~~r~~-~~eRvLVTtLT 455 (663)
T COG0556 385 KIPQTIYVSATPGDYELEQSG---GNVVEQIIRPT-----GLLDPEIEVRPTKGQVDDLLSEIRKRVA-KNERVLVTTLT 455 (663)
T ss_pred hcCCEEEEECCCChHHHHhcc---CceeEEeecCC-----CCCCCceeeecCCCcHHHHHHHHHHHHh-cCCeEEEEeeh
Confidence 457999999997543222111 12222222222 2233334444444444444444444332 35799999999
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcC-----CCCChhHH
Q psy9620 310 KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFD-----YPNNSEDY 384 (453)
Q Consensus 310 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d-----~p~s~~~y 384 (453)
++.|+.|.++|.+.|+.+.++|++...-||.+++.+++.|..+|||.-+.+-+|||+|.|.+|..+| +.+|..+.
T Consensus 456 KkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SL 535 (663)
T COG0556 456 KKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSL 535 (663)
T ss_pred HHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877 45789999
Q ss_pred HHhhhcccCCCCcceEEEEEcCC
Q psy9620 385 IHRIGRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 385 ~qr~GRagR~g~~g~~~~~~~~~ 407 (453)
+|-+|||+|. ..|+++++.+.-
T Consensus 536 IQtIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 536 IQTIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHHHHhhc-cCCeEEEEchhh
Confidence 9999999996 689999987754
No 96
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=4.7e-22 Score=204.73 Aligned_cols=117 Identities=21% Similarity=0.396 Sum_probs=107.7
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcC--
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFD-- 376 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d-- 376 (453)
...++||||+|+..++.|++.|...++.+..+|+++++.+|..+++.|+.|++.|||||+++++|+|+|++++||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ---CCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHH
Q psy9620 377 ---YPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 377 ---~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 416 (453)
.|.+..+|+||+|||||. ..|.+++|++..+....+.+.
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHH
Confidence 799999999999999998 689999999976644444333
No 97
>KOG0950|consensus
Probab=99.90 E-value=5.5e-23 Score=207.89 Aligned_cols=288 Identities=20% Similarity=0.300 Sum_probs=207.4
Q ss_pred CCHHHHHH-HHHCCCCCCCHHHHHHH--HHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH
Q psy9620 120 FPDYVLKE-VKRQGFDRPTPIQAQGW--PIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR 196 (453)
Q Consensus 120 l~~~l~~~-l~~~g~~~~~~~Q~~~i--~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr 196 (453)
+++.+... .+..|...++.+|.+++ +.++.++++|..+||+.|||+++.+.++..+... ...++.+.|..
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~v 279 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYV 279 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEeccee
Confidence 44444443 34458889999999998 5688999999999999999999999988776653 33589999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-----------------------------------------------
Q psy9620 197 ELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ----------------------------------------------- 229 (453)
Q Consensus 197 ~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------------------------------------- 229 (453)
..++.-...+..+....++.+.+.+|..+....
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg 359 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRG 359 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccc
Confidence 999988889999998999999888876554433
Q ss_pred ----------------CCceEEEEeccCcHHHHHHHHHhhccceEEE-ecccccccCccceeEEEEc-------------
Q psy9620 230 ----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQIN-IGSLTLSANHNIQQVVEVC------------- 279 (453)
Q Consensus 230 ----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~------------- 279 (453)
...|+|.||||+|. +..+ +.+++..+... ..+..+.....+-..+.-.
T Consensus 360 ~~lE~~l~k~~y~~~~~~~~iIGMSATi~N-~~lL-~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~ 437 (1008)
T KOG0950|consen 360 AILELLLAKILYENLETSVQIIGMSATIPN-NSLL-QDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLY 437 (1008)
T ss_pred hHHHHHHHHHHHhccccceeEeeeecccCC-hHHH-HHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhh
Confidence 34679999999964 3333 33333322221 1111111111111111000
Q ss_pred ---cccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHh----------------------------------
Q psy9620 280 ---AEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN---------------------------------- 322 (453)
Q Consensus 280 ---~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~---------------------------------- 322 (453)
...+..+.++.+..+.. .++.++||||++++.|+.++..+..
T Consensus 438 ~~~~g~~dpD~~v~L~tet~-~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~V 516 (1008)
T KOG0950|consen 438 SSNLGDEDPDHLVGLCTETA-PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPV 516 (1008)
T ss_pred hhhcccCCCcceeeehhhhh-hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchH
Confidence 00111234444444432 2345799999999999998866643
Q ss_pred ----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcC----CCCChhHHHHhhhcccCC
Q psy9620 323 ----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFD----YPNNSEDYIHRIGRTGRS 394 (453)
Q Consensus 323 ----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d----~p~s~~~y~qr~GRagR~ 394 (453)
..+.+.++|++++.++|+.+...|++|...|++||+.++.|+++|..+++|-.- ...+..+|.||+|||||+
T Consensus 517 l~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~ 596 (1008)
T KOG0950|consen 517 LAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRT 596 (1008)
T ss_pred HheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhc
Confidence 124578999999999999999999999999999999999999999999888643 235678999999999999
Q ss_pred CC--cceEEEEEcCCChHHHHHHHH
Q psy9620 395 DN--TGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 395 g~--~g~~~~~~~~~~~~~~~~l~~ 417 (453)
|- .|.+++++.+.+.+...+++.
T Consensus 597 gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 597 GIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred ccccCcceEEEeeccchhHHHHHHh
Confidence 64 588999999998877775543
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=9.4e-22 Score=202.07 Aligned_cols=126 Identities=17% Similarity=0.247 Sum_probs=109.1
Q ss_pred ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 281 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 281 ~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
..+|...+.+-+..+. ....|+||||.|...++.++..|...++.+..+|+.+.+.|++.+.+.|+.|. |+|||+++
T Consensus 431 ~~~K~~Aii~ei~~~~-~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmA 507 (908)
T PRK13107 431 ADEKYQAIIKDIKDCR-ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMA 507 (908)
T ss_pred HHHHHHHHHHHHHHHH-HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCc
Confidence 3455555555555543 34779999999999999999999999999999999999999999999999998 99999999
Q ss_pred ccCCCCCC--------------------------------C-----cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEE
Q psy9620 361 ARGLDVDD--------------------------------V-----KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTF 403 (453)
Q Consensus 361 ~~GiDip~--------------------------------v-----~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~ 403 (453)
+||+||.= | -|||-...+.|..-=.|-.||+||.|.+|.+..|
T Consensus 508 GRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~ 587 (908)
T PRK13107 508 GRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY 587 (908)
T ss_pred CCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE
Confidence 99999961 1 2788888888888889999999999999999999
Q ss_pred EcCCCh
Q psy9620 404 FTQQNS 409 (453)
Q Consensus 404 ~~~~~~ 409 (453)
++-+|.
T Consensus 588 lSlED~ 593 (908)
T PRK13107 588 LSMEDS 593 (908)
T ss_pred EEeCcH
Confidence 987663
No 99
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.89 E-value=2.2e-21 Score=202.26 Aligned_cols=268 Identities=19% Similarity=0.233 Sum_probs=187.0
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 126 KEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 126 ~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
......+| .+.++|++++.++..+.+++++||||+|||++...++...+.. +.++++++|.++|.+|.+..
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrd 181 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRD 181 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHH
Confidence 33445677 8999999999999999999999999999999998888777654 44499999999999999988
Q ss_pred HHHhcCCCCceEEEEeCCccCCCC-----------------------------------------------------CCc
Q psy9620 206 ARDFGSSTYLRSTCVYGGASKGPQ-----------------------------------------------------PDR 232 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~gg~~~~~~-----------------------------------------------------~~~ 232 (453)
+........-.+..++|+.+.... ...
T Consensus 182 l~~~fgdv~~~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v 261 (1041)
T COG4581 182 LLAKFGDVADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHV 261 (1041)
T ss_pred HHHHhhhhhhhccceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCC
Confidence 877654322223445555444433 446
Q ss_pred eEEEEeccCcHHHHHHHHHhh---ccceEEEecccccccCccceeEEE-------Eccccch------------------
Q psy9620 233 QVLMWSATWPREVQKLAEDFL---DSYIQINIGSLTLSANHNIQQVVE-------VCAEHEK------------------ 284 (453)
Q Consensus 233 q~v~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~k------------------ 284 (453)
++|++|||+|. ..++..|+. ..+..+...... +..+.+++. .+.+..+
T Consensus 262 ~~v~LSATv~N-~~EF~~Wi~~~~~~~~~vv~t~~R---pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~ 337 (1041)
T COG4581 262 RFVFLSATVPN-AEEFAEWIQRVHSQPIHVVSTEHR---PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSE 337 (1041)
T ss_pred cEEEEeCCCCC-HHHHHHHHHhccCCCeEEEeecCC---CCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccch
Confidence 99999999965 445666654 223333222111 111111111 1110000
Q ss_pred --------------------------hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc---------------
Q psy9620 285 --------------------------ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY--------------- 323 (453)
Q Consensus 285 --------------------------~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--------------- 323 (453)
......+++.+.....-++|+|+-+++.|+..+..+...
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~i 417 (1041)
T COG4581 338 KVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREI 417 (1041)
T ss_pred hccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHH
Confidence 001122333333334558999999999999888887621
Q ss_pred -------------CC-------------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEE----
Q psy9620 324 -------------GW-------------AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVI---- 373 (453)
Q Consensus 324 -------------~~-------------~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI---- 373 (453)
++ .+.++|++|-+..|..+.+.|..|-++||+||.+++.|+|.|.-++|+
T Consensus 418 i~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~ 497 (1041)
T COG4581 418 IDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLS 497 (1041)
T ss_pred HHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeE
Confidence 11 145799999999999999999999999999999999999999888776
Q ss_pred EcC----CCCChhHHHHhhhcccCCCCc--ceEEEEEcC
Q psy9620 374 NFD----YPNNSEDYIHRIGRTGRSDNT--GTSYTFFTQ 406 (453)
Q Consensus 374 ~~d----~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~ 406 (453)
.+| -+-+..+|+|+.|||||.|.+ |.++++-.+
T Consensus 498 K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 498 KFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred EecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 233 234689999999999999865 777776443
No 100
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=6.1e-21 Score=200.75 Aligned_cols=269 Identities=18% Similarity=0.234 Sum_probs=186.3
Q ss_pred CCHHHHHHHHHHhc---CC-cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 136 PTPIQAQGWPIAMS---GS-NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~---g~-d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
..+.|..++..++. .. .+++.||||+|||++.+++++..+... ....++++++.|++.+.+++++.++....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 48899999988774 34 788999999999999999988766552 11477899999999999999999997643
Q ss_pred CCCceEEEEeCCccC------CC---C-----------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASK------GP---Q----------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~------~~---~----------------------------------------------------- 229 (453)
...+.....++.... .. .
T Consensus 272 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 272 LFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 322222111111000 00 0
Q ss_pred -----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchh--hhHHH
Q psy9620 230 -----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE--NKLFG 290 (453)
Q Consensus 230 -----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~--~~l~~ 290 (453)
.+..+|+||||+|+...+.+...+.+...+.......................... ..+..
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 431 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIE 431 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhh
Confidence 57889999999999999888887765443332211000001111010000000011 01111
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEeccCccCCCC
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFR----NGRAGILVATDVAARGLDV 366 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~----~g~~~vLvaT~~~~~GiDi 366 (453)
.+... .....+++|.|||...|..++..|+..+..+..+|+.+...+|.+.++.++ .+...|+|||++++.|+|+
T Consensus 432 ~~~~~-~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 432 LISEE-VKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred cchhh-hccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 11111 134679999999999999999999998778999999999999998888655 5788999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCC--CcceEEEEEcCCChHHH
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSD--NTGTSYTFFTQQNSRQA 412 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~~~~~~ 412 (453)
+++++|-==.| +...+||+||+.|.| ..|..+++.........
T Consensus 511 -dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~ 555 (733)
T COG1203 511 -DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYL 555 (733)
T ss_pred -ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCCch
Confidence 58877765445 999999999999998 56888887776544333
No 101
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=9.5e-21 Score=195.00 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=91.4
Q ss_pred cccCCCHHHHHHHH-----HCCCCCC---CHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 116 AEANFPDYVLKEVK-----RQGFDRP---TPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 116 ~~~~l~~~l~~~l~-----~~g~~~~---~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
+.+.+...+.+.+. ..||..| +|+|.++++.+..++++++.++||+|||++|++|++..+... .
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g--------~ 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG--------K 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------C
Confidence 55678888888776 5789988 999999999999999999999999999999999999877532 1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCC
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKG 227 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 227 (453)
.++||+||++||.|+++++..+....++++.+++||.+..
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~ 176 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLE 176 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHH
Confidence 3899999999999999999999998999999999886543
No 102
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=3e-21 Score=199.14 Aligned_cols=127 Identities=17% Similarity=0.303 Sum_probs=112.0
Q ss_pred cccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy9620 280 AEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV 359 (453)
Q Consensus 280 ~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 359 (453)
...+|...+...+.... ....++||||+|+..++.|+..|...++++..+|+ .+.+|+..+..|+.+...|+|||++
T Consensus 579 t~~eK~~Ali~~I~~~~-~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQ-KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred CHHHHHHHHHHHHHHHh-hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 33456666666665543 34679999999999999999999999999999997 6889999999999999999999999
Q ss_pred CccCCCCC---CCc-----EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 360 AARGLDVD---DVK-----FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 360 ~~~GiDip---~v~-----~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
++||+||+ .|. +||+++.|.|...|.|++|||||.|.+|.++.|++.+|.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999999 554 459999999999999999999999999999999998763
No 103
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=4.7e-20 Score=191.40 Aligned_cols=131 Identities=20% Similarity=0.362 Sum_probs=117.0
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC-
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY- 377 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~- 377 (453)
...++||||+++..++.|++.|...++.+..+|+++++.+|..+++.|+.|.+.|||||+++++|+|+|++++||++|.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred ----CCChhHHHHhhhcccCCCCcceEEEEEcCC---------ChHHHHHHHHHHHhcCCCCChHH
Q psy9620 378 ----PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ---------NSRQAKDLIDVLTESNHPVDPKL 430 (453)
Q Consensus 378 ----p~s~~~y~qr~GRagR~g~~g~~~~~~~~~---------~~~~~~~l~~~l~~~~~~v~~~l 430 (453)
|.+..+|+||+||+||. ..|.|++|++.. +....+++...++.....+|..+
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 78999999999999997 789999999853 44555666666777777777655
No 104
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.86 E-value=2.4e-20 Score=201.55 Aligned_cols=96 Identities=26% Similarity=0.401 Sum_probs=83.8
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc------C---CeEEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEeccCccCCCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY------G---WAAVGIHGDKSQQERDYVLKEFRNGRA-GILVATDVAARGLDVDD 368 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~------~---~~~~~~h~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~GiDip~ 368 (453)
..+++||||.++.+|+.+++.|.+. + ..+..+|++++ ++..++++|+++.. +|||+++++.+|+|+|.
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 3479999999999999999987753 1 24567899875 56789999999887 69999999999999999
Q ss_pred CcEEEEcCCCCChhHHHHhhhcccCCCC
Q psy9620 369 VKFVINFDYPNNSEDYIHRIGRTGRSDN 396 (453)
Q Consensus 369 v~~VI~~d~p~s~~~y~qr~GRagR~g~ 396 (453)
|.+||++..+.|...|+||+||+.|.-.
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 9999999999999999999999999743
No 105
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.85 E-value=5.4e-20 Score=190.65 Aligned_cols=257 Identities=18% Similarity=0.254 Sum_probs=179.7
Q ss_pred CHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH-hcCCCCc
Q psy9620 137 TPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD-FGSSTYL 215 (453)
Q Consensus 137 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~-~~~~~~~ 215 (453)
+....+.+.++.+.+-++|+++||||||...-.-+++.-. ..+..+.++-|.|--|..+++.+.+ ++...+-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 3345566667778889999999999999653333333222 2345688889999888887766554 3333332
Q ss_pred eEEE----------------EeCCccCC-----CC----------------------------------CCceEEEEecc
Q psy9620 216 RSTC----------------VYGGASKG-----PQ----------------------------------PDRQVLMWSAT 240 (453)
Q Consensus 216 ~~~~----------------~~gg~~~~-----~~----------------------------------~~~q~v~~SAT 240 (453)
.|.. ++.|.-.. .. ++.++|.||||
T Consensus 125 ~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSAT 204 (845)
T COG1643 125 TVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSAT 204 (845)
T ss_pred eeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 2221 11111000 00 47899999999
Q ss_pred CcHHHHHHHHHhhccceEEEecccccccCccceeEE-EEccccc-hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHH
Q psy9620 241 WPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVV-EVCAEHE-KENKLFGLLNDISSKDENKTIIFAETKRKVDKITK 318 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~-k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~ 318 (453)
+..+ .+..++.+...+.+.....+ ++-.+ ....... -...+...+........+.+|||.+...+++.+++
T Consensus 205 ld~~---rfs~~f~~apvi~i~GR~fP----Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~ 277 (845)
T COG1643 205 LDAE---RFSAYFGNAPVIEIEGRTYP----VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAE 277 (845)
T ss_pred cCHH---HHHHHcCCCCEEEecCCccc----eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHH
Confidence 8663 34455665544554443322 22122 1111122 34555566666666678899999999999999999
Q ss_pred HHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC-----------------
Q psy9620 319 SIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY----------------- 377 (453)
Q Consensus 319 ~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~----------------- 377 (453)
.|.+ ....+..+|+.++.+++..+++--..++.+|++||++++.+|.||+|.+||.-+.
T Consensus 278 ~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~ 357 (845)
T COG1643 278 WLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLET 357 (845)
T ss_pred HHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeE
Confidence 9998 3578999999999999999999888888889999999999999999999996433
Q ss_pred -CCChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 378 -PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 378 -p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
|-|.++..||.|||||. .+|.||-+|++++
T Consensus 358 ~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 358 EPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred EEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 45778899999999999 6899999999754
No 106
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.84 E-value=5.8e-20 Score=165.10 Aligned_cols=142 Identities=46% Similarity=0.769 Sum_probs=123.9
Q ss_pred ccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcC
Q psy9620 115 FAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAP 194 (453)
Q Consensus 115 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 194 (453)
|+++++++.+.+.+.+.|+..|+++|.++++.+++++|+++++|||+|||++|++|++..+.... ...++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999887652 125788999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC---------C------------------------------------
Q psy9620 195 TRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP---------Q------------------------------------ 229 (453)
Q Consensus 195 tr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---------~------------------------------------ 229 (453)
|++|+.|+.+.+..+....++.+.+++|+..... .
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 9999999999999998777788888777655311 0
Q ss_pred ---------------CCceEEEEeccCcHHHHHHHHHhhccceEE
Q psy9620 230 ---------------PDRQVLMWSATWPREVQKLAEDFLDSYIQI 259 (453)
Q Consensus 230 ---------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~ 259 (453)
..+|++++|||+++.+..++..++.+++.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 468999999999999999999998887754
No 107
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=6.9e-19 Score=179.89 Aligned_cols=269 Identities=20% Similarity=0.259 Sum_probs=184.0
Q ss_pred CCCCHHHHHHHHHHhcC----CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 134 DRPTPIQAQGWPIAMSG----SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g----~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..+++.|+.++..+.+. +..++.+.||||||.+|+-.+-..+. .|..||||+|-.+|..|+.+.++..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~--------~GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA--------QGKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH--------cCCEEEEEeccccchHHHHHHHHHH
Confidence 36889999999998765 67899999999999999776666554 3667999999999999999999887
Q ss_pred cCCCCceEEEEeCCccCCCC------------------------------------------------------------
Q psy9620 210 GSSTYLRSTCVYGGASKGPQ------------------------------------------------------------ 229 (453)
Q Consensus 210 ~~~~~~~~~~~~gg~~~~~~------------------------------------------------------------ 229 (453)
+. .++.+++.+.+....
T Consensus 269 Fg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra 345 (730)
T COG1198 269 FG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA 345 (730)
T ss_pred hC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHH
Confidence 43 455555554443322
Q ss_pred --CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchh-----hhHHHHHHhhhcCCCCc
Q psy9620 230 --PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE-----NKLFGLLNDISSKDENK 302 (453)
Q Consensus 230 --~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~ll~~~~~~~~~~ 302 (453)
.++++|+-|||.. ++.+....-..+..+............-.+.+.+..+..+. ..|++.+.... ..+.+
T Consensus 346 ~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l-~~geQ 422 (730)
T COG1198 346 KKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL-ERGEQ 422 (730)
T ss_pred HHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH-hcCCe
Confidence 6789999999954 44443332222333333322211112222333333322222 33444444332 23668
Q ss_pred EEEEEcchhH------------------------------------------------------------HHHHHHHHHh
Q psy9620 303 TIIFAETKRK------------------------------------------------------------VDKITKSIQN 322 (453)
Q Consensus 303 ~lVF~~s~~~------------------------------------------------------------~~~l~~~L~~ 322 (453)
+|+|+|.+-. ++++.+.|..
T Consensus 423 ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~ 502 (730)
T COG1198 423 VLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKR 502 (730)
T ss_pred EEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHH
Confidence 9999987643 4677777766
Q ss_pred c--CCeEEEEcCCCCHHH--HHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCC--C----------ChhHHHH
Q psy9620 323 Y--GWAAVGIHGDKSQQE--RDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYP--N----------NSEDYIH 386 (453)
Q Consensus 323 ~--~~~~~~~h~~~~~~~--r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p--~----------s~~~y~q 386 (453)
. +..+..+.+|..... -+..++.|.+|+.+|||.|++++.|.|+|++++|...|.. . ...-+.|
T Consensus 503 ~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Q 582 (730)
T COG1198 503 LFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQ 582 (730)
T ss_pred HCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHH
Confidence 4 667888888766544 4678999999999999999999999999999986654432 1 1234589
Q ss_pred hhhcccCCCCcceEEEEEcCCChHHHHHHH
Q psy9620 387 RIGRTGRSDNTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 387 r~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 416 (453)
-+|||||.+.+|.+++-....+...++.++
T Consensus 583 vaGRAgR~~~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 583 VAGRAGRAGKPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred HHhhhccCCCCCeEEEEeCCCCcHHHHHHH
Confidence 999999999999999888777655554444
No 108
>KOG0920|consensus
Probab=99.83 E-value=2.5e-19 Score=185.02 Aligned_cols=265 Identities=20% Similarity=0.269 Sum_probs=187.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH-hcCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD-FGSST 213 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~-~~~~~ 213 (453)
..+..+.+.+.++.+.+.++|++.||||||.-.---+|+...... ...++++..|.|--|..+++++.. .+...
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 356778888899999999999999999999875555566554433 456689999999999998887654 33222
Q ss_pred CceEEEEeCCccCCCC------------------------------------------------------CCceEEEEec
Q psy9620 214 YLRSTCVYGGASKGPQ------------------------------------------------------PDRQVLMWSA 239 (453)
Q Consensus 214 ~~~~~~~~gg~~~~~~------------------------------------------------------~~~q~v~~SA 239 (453)
+-.+..-....+.... ++.++|+|||
T Consensus 248 g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSA 327 (924)
T KOG0920|consen 248 GEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSA 327 (924)
T ss_pred CCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeee
Confidence 2111111111100000 8899999999
Q ss_pred cCcHHHHHHHHHhhccceEEEecccccccCc---------------cceeE------------EEEccccchhhhHHHHH
Q psy9620 240 TWPREVQKLAEDFLDSYIQINIGSLTLSANH---------------NIQQV------------VEVCAEHEKENKLFGLL 292 (453)
Q Consensus 240 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~i~~~------------~~~~~~~~k~~~l~~ll 292 (453)
|+.. +....|+.....+.+......+.. ...+. +.......+.+.+..++
T Consensus 328 T~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li 404 (924)
T KOG0920|consen 328 TLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLI 404 (924)
T ss_pred ecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHH
Confidence 9873 455666666555554433221110 00000 11111223445566677
Q ss_pred HhhhcCC-CCcEEEEEcchhHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCC
Q psy9620 293 NDISSKD-ENKTIIFAETKRKVDKITKSIQNY-------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGL 364 (453)
Q Consensus 293 ~~~~~~~-~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 364 (453)
..+...+ .+.+|||.+...++..+.+.|... .+.+..+|+.|+..++..+++....|..+||+||++++..|
T Consensus 405 ~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSI 484 (924)
T KOG0920|consen 405 EYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSI 484 (924)
T ss_pred HhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcc
Confidence 7665543 679999999999999999999742 35678899999999999999999999999999999999999
Q ss_pred CCCCCcEEEE--------cCCCC----------ChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 365 DVDDVKFVIN--------FDYPN----------NSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 365 Dip~v~~VI~--------~d~p~----------s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
.|+||.+||. ||+-. |.+.-.||.|||||. .+|.||.+|+...
T Consensus 485 TIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 485 TIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred cccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 9999999996 55443 344558999999999 8999999999754
No 109
>KOG0922|consensus
Probab=99.81 E-value=3.5e-18 Score=167.92 Aligned_cols=258 Identities=15% Similarity=0.276 Sum_probs=175.0
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH-hcCCCCce
Q psy9620 138 PIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD-FGSSTYLR 216 (453)
Q Consensus 138 ~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~-~~~~~~~~ 216 (453)
..-.+.+..+.+++-+|++++||||||. ++|-+ +....-. ....+.+.-|.|--|..+++.+.. .+...+-.
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKST--QipQy--L~eaG~~---~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~ 126 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKST--QIPQY--LAEAGFA---SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEE 126 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHH--HHhcccc---cCCcEEeecCchHHHHHHHHHHHHHhCCCcCce
Confidence 3445667777788899999999999996 45544 3222111 122378889999988888765543 33333322
Q ss_pred EEE--EeCCccCCCC----------------------------------------------------CCceEEEEeccCc
Q psy9620 217 STC--VYGGASKGPQ----------------------------------------------------PDRQVLMWSATWP 242 (453)
Q Consensus 217 ~~~--~~gg~~~~~~----------------------------------------------------~~~q~v~~SAT~~ 242 (453)
|.. .+.+.....- ++.++|++|||+.
T Consensus 127 VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATld 206 (674)
T KOG0922|consen 127 VGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLD 206 (674)
T ss_pred eeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeec
Confidence 221 1111111000 6789999999986
Q ss_pred HHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchh-hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHH
Q psy9620 243 REVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE-NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQ 321 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~ 321 (453)
. +....|+.+...+.+..... .++..+...+..+-. +.+.-+++.....+.+-+|||....++++.+++.|.
T Consensus 207 a---~kfS~yF~~a~i~~i~GR~f----PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~ 279 (674)
T KOG0922|consen 207 A---EKFSEYFNNAPILTIPGRTF----PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLR 279 (674)
T ss_pred H---HHHHHHhcCCceEeecCCCC----ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHH
Confidence 5 34456666644444443322 222222222222222 222333333334566789999999999999999998
Q ss_pred hc------C--CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC----------------
Q psy9620 322 NY------G--WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY---------------- 377 (453)
Q Consensus 322 ~~------~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~---------------- 377 (453)
+. + .-+..+|+.|+.+++..+++.-..|..+|++||++++..|.|+.|.+||.-++
T Consensus 280 e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~ 359 (674)
T KOG0922|consen 280 ERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLI 359 (674)
T ss_pred HHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCcccee
Confidence 64 1 13567999999999999999999999999999999999999999999996332
Q ss_pred --CCChhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 378 --PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 378 --p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
|-|.++-.||+|||||. .+|+||-++++++..
T Consensus 360 v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 360 VVPISKASANQRAGRAGRT-GPGKCYRLYTESAYD 393 (674)
T ss_pred EEechHHHHhhhcccCCCC-CCceEEEeeeHHHHh
Confidence 45788889999999999 589999999987643
No 110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.80 E-value=6.7e-18 Score=172.30 Aligned_cols=226 Identities=25% Similarity=0.373 Sum_probs=160.4
Q ss_pred HHHHC-CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 127 EVKRQ-GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 127 ~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
.+++. || .|+..|.-....+..|++.-++||||.|||.--++..+. +.. .+.++++|+||..|+.|+.+.
T Consensus 74 fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~-~a~-------kgkr~yii~PT~~Lv~Q~~~k 144 (1187)
T COG1110 74 FFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLY-LAK-------KGKRVYIIVPTTTLVRQVYER 144 (1187)
T ss_pred HHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHH-HHh-------cCCeEEEEecCHHHHHHHHHH
Confidence 34444 55 999999999999999999999999999999543333332 211 467899999999999999999
Q ss_pred HHHhcCCCC-ceEEE-EeCCccCCCC------------------------------------------------------
Q psy9620 206 ARDFGSSTY-LRSTC-VYGGASKGPQ------------------------------------------------------ 229 (453)
Q Consensus 206 ~~~~~~~~~-~~~~~-~~gg~~~~~~------------------------------------------------------ 229 (453)
+.+++...+ .++.. .++..+....
T Consensus 145 l~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 145 LKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred HHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHH
Confidence 999986555 44443 3333222211
Q ss_pred --------------------------------------------------CCceEEEEeccCcHHH--HHHHHHhhccce
Q psy9620 230 --------------------------------------------------PDRQVLMWSATWPREV--QKLAEDFLDSYI 257 (453)
Q Consensus 230 --------------------------------------------------~~~q~v~~SAT~~~~~--~~~~~~~~~~~~ 257 (453)
...++++.|||..+.- ..+.+.++.
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg--- 301 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG--- 301 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC---
Confidence 3467888888875322 233333332
Q ss_pred EEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcc---hhHHHHHHHHHHhcCCeEEEEcCCC
Q psy9620 258 QINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAET---KRKVDKITKSIQNYGWAAVGIHGDK 334 (453)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s---~~~~~~l~~~L~~~~~~~~~~h~~~ 334 (453)
..++... ....+|...+. ..+...+++++++.+ ..-.|||++. ++.++.++++|+..|+++..+|+
T Consensus 302 -FevG~~~-~~LRNIvD~y~---~~~~~e~~~elvk~l----G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a-- 370 (1187)
T COG1110 302 -FEVGSGG-EGLRNIVDIYV---ESESLEKVVELVKKL----GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA-- 370 (1187)
T ss_pred -CccCccc-hhhhheeeeec---cCccHHHHHHHHHHh----CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec--
Confidence 1222211 11223332222 224556677777765 4578999999 99999999999999999999998
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEec----cCccCCCCCC-CcEEEEcCCC
Q psy9620 335 SQQERDYVLKEFRNGRAGILVATD----VAARGLDVDD-VKFVINFDYP 378 (453)
Q Consensus 335 ~~~~r~~~~~~f~~g~~~vLvaT~----~~~~GiDip~-v~~VI~~d~p 378 (453)
.....++.|..|+++|||.+. ++.||||+|. +.++|.++.|
T Consensus 371 ---~~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 371 ---EKEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ---cchhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 337789999999999999875 6889999995 6789999888
No 111
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=1e-18 Score=145.19 Aligned_cols=120 Identities=41% Similarity=0.705 Sum_probs=109.4
Q ss_pred chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCcc
Q psy9620 283 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAAR 362 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 362 (453)
.+...+..++....+ ...++||||+++..++.+++.|.+....+..+|+.++..+|..+++.|.++..+||++|+++++
T Consensus 12 ~k~~~i~~~i~~~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 12 EKLEALLELLKEHLK-KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHhccc-CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 466666666665532 4679999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEE
Q psy9620 363 GLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTF 403 (453)
Q Consensus 363 GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~ 403 (453)
|+|+|.+++||+++.|.+..+|+|++||++|.|+.|.++++
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999988887764
No 112
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.80 E-value=6.1e-18 Score=181.72 Aligned_cols=132 Identities=17% Similarity=0.259 Sum_probs=96.0
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCcc
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAAR 362 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 362 (453)
.+...+..+.....+++|||++|....+.++..|.. .++.+ +..+.. ..|..++++|+.++..||++|+.+++
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~E 737 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWE 737 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeec
Confidence 344555555455567999999999999999999975 23443 333333 57899999999999999999999999
Q ss_pred CCCCCCCc--EEEEcCCCCC------------------------------hhHHHHhhhcccCCCCcceEEEEEcCC--C
Q psy9620 363 GLDVDDVK--FVINFDYPNN------------------------------SEDYIHRIGRTGRSDNTGTSYTFFTQQ--N 408 (453)
Q Consensus 363 GiDip~v~--~VI~~d~p~s------------------------------~~~y~qr~GRagR~g~~g~~~~~~~~~--~ 408 (453)
|||+|+.. +||...+|.. +..+.|-+||.-|...+--+++++++. .
T Consensus 738 GVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~ 817 (850)
T TIGR01407 738 GVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVG 817 (850)
T ss_pred ccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcccccc
Confidence 99999877 4666665521 223479999999997665566666654 4
Q ss_pred hHHHHHHHHHHHh
Q psy9620 409 SRQAKDLIDVLTE 421 (453)
Q Consensus 409 ~~~~~~l~~~l~~ 421 (453)
..+-+.+++.|..
T Consensus 818 ~~Yg~~~~~sLp~ 830 (850)
T TIGR01407 818 KRYGKRFEKSLPE 830 (850)
T ss_pred chHHHHHHHhCCC
Confidence 4566777776654
No 113
>KOG0923|consensus
Probab=99.78 E-value=9.8e-18 Score=163.43 Aligned_cols=258 Identities=19% Similarity=0.297 Sum_probs=176.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH-HhcCC-
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR-DFGSS- 212 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~-~~~~~- 212 (453)
..+++-.+.+.++...+-+||.+.||||||. ++|-+. ....-.. .+.++-+..|.|--|..++..+. +++..
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL--~EaGytk--~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL 338 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYL--YEAGYTK--GGKKIGCTQPRRVAAMSVAARVAEEMGVKL 338 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHH--Hhccccc--CCceEeecCcchHHHHHHHHHHHHHhCccc
Confidence 4567778888888899999999999999995 466543 3322211 24457788899999888866544 33322
Q ss_pred ---CCceEEE--E----------eCCccCC-----C---------------------------------CCCceEEEEec
Q psy9620 213 ---TYLRSTC--V----------YGGASKG-----P---------------------------------QPDRQVLMWSA 239 (453)
Q Consensus 213 ---~~~~~~~--~----------~gg~~~~-----~---------------------------------~~~~q~v~~SA 239 (453)
.+..+.. + ..|+-.. + .++.++++.||
T Consensus 339 G~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSA 418 (902)
T KOG0923|consen 339 GHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSA 418 (902)
T ss_pred ccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeecc
Confidence 2222210 0 0110000 0 08899999999
Q ss_pred cCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhh-HHHHHHhhhcCCCCcEEEEEcchhHHHHHHH
Q psy9620 240 TWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENK-LFGLLNDISSKDENKTIIFAETKRKVDKITK 318 (453)
Q Consensus 240 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~ 318 (453)
|+..+ ....|+.+.....+.....+ +.-++...++.+-.+. +..++......+.+-+|||....++++...+
T Consensus 419 T~DAe---kFS~fFDdapIF~iPGRRyP----Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e 491 (902)
T KOG0923|consen 419 TMDAE---KFSAFFDDAPIFRIPGRRYP----VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKE 491 (902)
T ss_pred ccCHH---HHHHhccCCcEEeccCcccc----eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHH
Confidence 98653 34556666444444333322 2223333333322222 2222322233456789999999999888887
Q ss_pred HHHhc---------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC------------
Q psy9620 319 SIQNY---------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY------------ 377 (453)
Q Consensus 319 ~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~------------ 377 (453)
.|... .+-+..+|+.++.+.+..|++--..|-.+|++||++++..|.|++|.+||.-++
T Consensus 492 ~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGm 571 (902)
T KOG0923|consen 492 NLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGM 571 (902)
T ss_pred HHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCc
Confidence 77653 355788999999999999999999999999999999999999999999996333
Q ss_pred ------CCChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 378 ------PNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 378 ------p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
|-|.++-.||+|||||.| +|+|+-+|+.
T Consensus 572 esL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 572 ESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred eeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 456777899999999995 8999999984
No 114
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=4.3e-17 Score=164.27 Aligned_cols=260 Identities=18% Similarity=0.168 Sum_probs=189.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|.-+.-.++.|+ |+.+.||+|||+++.+|++..... |..|.|++|+..||.|-++++..+..
T Consensus 76 g~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~ 144 (764)
T PRK12326 76 GL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYE 144 (764)
T ss_pred CC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 55 89999999998898886 889999999999999999877653 55599999999999999999999999
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
.+++++.++.+..+....
T Consensus 145 ~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 145 ALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred hcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 999999988776543211
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 230 -------------------------------------------------------------------------------- 229 (453)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (453)
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence
Q ss_pred --------------------------------------------------------CCceEEEEeccCcHHHHHHHHHhh
Q psy9620 230 --------------------------------------------------------PDRQVLMWSATWPREVQKLAEDFL 253 (453)
Q Consensus 230 --------------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~ 253 (453)
.-..+..||.|...+..++.+.|-
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~ 384 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 384 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhC
Confidence 122455677776555555544443
Q ss_pred ccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCC
Q psy9620 254 DSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD 333 (453)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~ 333 (453)
.+.+.+ .... +....-.....+....+|...+.+-+..+. ....|+||.+.|....+.++..|.+.+++...+++.
T Consensus 385 l~Vv~I--Ptnk-p~~R~d~~d~iy~t~~~k~~Aii~ei~~~~-~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk 460 (764)
T PRK12326 385 LGVSVI--PPNK-PNIREDEADRVYATAAEKNDAIVEHIAEVH-ETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAK 460 (764)
T ss_pred CcEEEC--CCCC-CceeecCCCceEeCHHHHHHHHHHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccC
Confidence 332222 1111 000001111233334456665655555543 356799999999999999999999999999999886
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC----------CC-----cEEEEcCCCCChhHHHHhhhcccCCCCcc
Q psy9620 334 KSQQERDYVLKEFRNGRAGILVATDVAARGLDVD----------DV-----KFVINFDYPNNSEDYIHRIGRTGRSDNTG 398 (453)
Q Consensus 334 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip----------~v-----~~VI~~d~p~s~~~y~qr~GRagR~g~~g 398 (453)
-. +++.-+-.=.--.-.|.|||++++||.||. .| -|||-...+.|..-=.|-.||+||.|.+|
T Consensus 461 ~~--~~EA~IIa~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpG 538 (764)
T PRK12326 461 ND--AEEARIIAEAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPG 538 (764)
T ss_pred ch--HhHHHHHHhcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCC
Confidence 33 333333222223457999999999999986 12 28999999999999999999999999999
Q ss_pred eEEEEEcCCC
Q psy9620 399 TSYTFFTQQN 408 (453)
Q Consensus 399 ~~~~~~~~~~ 408 (453)
.+..|++-+|
T Consensus 539 ss~f~lSleD 548 (764)
T PRK12326 539 SSVFFVSLED 548 (764)
T ss_pred ceeEEEEcch
Confidence 9999998665
No 115
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.77 E-value=2e-18 Score=129.64 Aligned_cols=78 Identities=44% Similarity=0.726 Sum_probs=75.3
Q ss_pred HHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCC
Q psy9620 318 KSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSD 395 (453)
Q Consensus 318 ~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g 395 (453)
++|...++.+..+|+++++.+|..+++.|++++.+|||||+++++|||+|++++||++++|.|..+|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999975
No 116
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.72 E-value=8.2e-16 Score=163.72 Aligned_cols=124 Identities=20% Similarity=0.336 Sum_probs=105.1
Q ss_pred chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC---CCcEEEEecc
Q psy9620 283 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG---RAGILVATDV 359 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g---~~~vLvaT~~ 359 (453)
.|...|..+|..+.. ...++|||+......+.|.++|...++....+||.++..+|..+++.|... ..-+|++|.+
T Consensus 471 gKl~lLdkLL~~Lk~-~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 471 GKMVLLDKLLPKLKE-RDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred hHHHHHHHHHHHHHh-cCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 344445555555533 467999999999999999999999999999999999999999999999753 3457899999
Q ss_pred CccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcce--EEEEEcCC
Q psy9620 360 AARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGT--SYTFFTQQ 407 (453)
Q Consensus 360 ~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~ 407 (453)
.+.|||+..+++||+||+++|+....|++||+-|.|+... +|-|++..
T Consensus 550 GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 550 GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999997754 44555554
No 117
>KOG0924|consensus
Probab=99.72 E-value=1.3e-16 Score=155.95 Aligned_cols=253 Identities=20% Similarity=0.288 Sum_probs=169.0
Q ss_pred CHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH-hcCCCCc
Q psy9620 137 TPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD-FGSSTYL 215 (453)
Q Consensus 137 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~-~~~~~~~ 215 (453)
...+.+.+..+..++-+++++.||||||.. +| +++....-. ....+-+..|.|.-|..++..+.. ++-.++-
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~--QyL~edGY~---~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ--LA--QYLYEDGYA---DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhh--hH--HHHHhcccc---cCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 344555555666778899999999999964 33 333333221 233566778999999988776653 3222221
Q ss_pred eEE--EEeCCccCCCC----------------------------------------------------CCceEEEEeccC
Q psy9620 216 RST--CVYGGASKGPQ----------------------------------------------------PDRQVLMWSATW 241 (453)
Q Consensus 216 ~~~--~~~gg~~~~~~----------------------------------------------------~~~q~v~~SAT~ 241 (453)
.+. +.+.+...... .+.++|.+|||+
T Consensus 431 ~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm 510 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATM 510 (1042)
T ss_pred ccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccc
Confidence 111 11111110000 678999999998
Q ss_pred cHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhh----hcCCCCcEEEEEcchhHHHHHH
Q psy9620 242 PREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDI----SSKDENKTIIFAETKRKVDKIT 317 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~----~~~~~~~~lVF~~s~~~~~~l~ 317 (453)
.. +++ ..|+.+.....+.....++. .+.......+.+...+... .....+-+|||....++++..+
T Consensus 511 ~a--~kf-~nfFgn~p~f~IpGRTyPV~-------~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~ 580 (1042)
T KOG0924|consen 511 DA--QKF-SNFFGNCPQFTIPGRTYPVE-------IMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTC 580 (1042)
T ss_pred cH--HHH-HHHhCCCceeeecCCccceE-------EEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHH
Confidence 54 344 44555555555544332211 1111222333344444432 2334578999999988877666
Q ss_pred HHHHhc----------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC----------
Q psy9620 318 KSIQNY----------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY---------- 377 (453)
Q Consensus 318 ~~L~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~---------- 377 (453)
..+... ++.+..+++.|+...+..++.....|..+++|||++++..|.||++.+||.-++
T Consensus 581 ~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~ 660 (1042)
T KOG0924|consen 581 DIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRI 660 (1042)
T ss_pred HHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccccc
Confidence 665431 678999999999999999999999999999999999999999999999996432
Q ss_pred --------CCChhHHHHhhhcccCCCCcceEEEEEcCC
Q psy9620 378 --------PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 378 --------p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 407 (453)
|-|.+.--||+|||||. .+|.||-+|+..
T Consensus 661 G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 661 GMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTED 697 (1042)
T ss_pred ccceeEEEechhccchhhccccCCC-CCcceeeehhhh
Confidence 56777789999999999 489999999974
No 118
>KOG0949|consensus
Probab=99.71 E-value=3.6e-16 Score=158.36 Aligned_cols=90 Identities=21% Similarity=0.268 Sum_probs=73.3
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcC-CCCChhHHHHhhhcccCCCCcceEEEEEc
Q psy9620 327 AVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFD-YPNNSEDYIHRIGRTGRSDNTGTSYTFFT 405 (453)
Q Consensus 327 ~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d-~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 405 (453)
+.++|++|+...|..|+-.||.|...||+||.+++-|||.|.-++|+--| +-.++-.|.|++|||||.|-+-..-+.|.
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 67899999999999999999999999999999999999999888888776 45678999999999999987644333333
Q ss_pred CCChHHHHHHH
Q psy9620 406 QQNSRQAKDLI 416 (453)
Q Consensus 406 ~~~~~~~~~l~ 416 (453)
.--...+++|+
T Consensus 1045 giP~~kv~rLl 1055 (1330)
T KOG0949|consen 1045 GIPRQKVQRLL 1055 (1330)
T ss_pred eCcHHHHHHHH
Confidence 33334444444
No 119
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.5e-15 Score=156.84 Aligned_cols=126 Identities=17% Similarity=0.252 Sum_probs=97.7
Q ss_pred ccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEe
Q psy9620 279 CAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG-RAGILVAT 357 (453)
Q Consensus 279 ~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vLvaT 357 (453)
....+|...+++-+..+. ..+.|+||-+.|.+..+.|++.|...+++..++++.- .+++.-+-. ..| .-.|.|||
T Consensus 429 ~t~~eK~~Ai~~ei~~~~-~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~--~~~EA~IIa-~AG~~GaVTIAT 504 (913)
T PRK13103 429 LTAEEKYAAIITDIKECM-ALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKY--HEKEAEIIA-QAGRPGALTIAT 504 (913)
T ss_pred cCHHHHHHHHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhcccc--chhHHHHHH-cCCCCCcEEEec
Confidence 334455555555555443 3477999999999999999999999999887777753 344443333 334 56799999
Q ss_pred ccCccCCCCC--------------------------------CC-----cEEEEcCCCCChhHHHHhhhcccCCCCcceE
Q psy9620 358 DVAARGLDVD--------------------------------DV-----KFVINFDYPNNSEDYIHRIGRTGRSDNTGTS 400 (453)
Q Consensus 358 ~~~~~GiDip--------------------------------~v-----~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~ 400 (453)
++++||.||. .| -|||-...+.|..-=.|-.||+||.|.+|.+
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999999994 12 2789888999988889999999999999999
Q ss_pred EEEEcCCC
Q psy9620 401 YTFFTQQN 408 (453)
Q Consensus 401 ~~~~~~~~ 408 (453)
-.|++-+|
T Consensus 585 ~f~lSlED 592 (913)
T PRK13103 585 RFYLSLED 592 (913)
T ss_pred EEEEEcCc
Confidence 99998765
No 120
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.67 E-value=7.3e-15 Score=156.02 Aligned_cols=131 Identities=15% Similarity=0.239 Sum_probs=92.0
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
.+.+.+..+. ...+++||+++|.+..+.+++.|....+.+ ...+... .+..++++|+.++..||++|..+.+|||+
T Consensus 635 ~~~~~i~~~~-~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~ 710 (820)
T PRK07246 635 EIAKRLEELK-QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDF 710 (820)
T ss_pred HHHHHHHHHH-hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCC
Confidence 4445554555 456899999999999999999997665555 4444222 25668999999989999999999999999
Q ss_pred C--CCcEEEEcCCCC----C--------------------------hhHHHHhhhcccCCCCcceEEEEEcCC--ChHHH
Q psy9620 367 D--DVKFVINFDYPN----N--------------------------SEDYIHRIGRTGRSDNTGTSYTFFTQQ--NSRQA 412 (453)
Q Consensus 367 p--~v~~VI~~d~p~----s--------------------------~~~y~qr~GRagR~g~~g~~~~~~~~~--~~~~~ 412 (453)
| +...||...+|. + +..+.|-+||.-|...+--+++++++. ...+-
T Consensus 711 p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg 790 (820)
T PRK07246 711 VQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYG 790 (820)
T ss_pred CCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHH
Confidence 7 345566655552 1 223578999999986554455666654 34556
Q ss_pred HHHHHHHHh
Q psy9620 413 KDLIDVLTE 421 (453)
Q Consensus 413 ~~l~~~l~~ 421 (453)
+.+++.|-.
T Consensus 791 ~~~l~sLP~ 799 (820)
T PRK07246 791 KQILASLAE 799 (820)
T ss_pred HHHHHhCCC
Confidence 666666543
No 121
>KOG4150|consensus
Probab=99.67 E-value=9.8e-16 Score=147.20 Aligned_cols=267 Identities=13% Similarity=0.101 Sum_probs=177.5
Q ss_pred HHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 129 KRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 129 ~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
..+-......+|.+++..+.+|+++++.-.|.+||.++|.+.....+... .....+++.||+++++...+.+.-
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~------~~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC------HATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC------cccceecchhHHHHhhccCCceEE
Confidence 33445578899999999999999999999999999999998887655433 233467888888887764322111
Q ss_pred hcCC-CCce--EEEEeCCccCCCC--------------------------------------------------------
Q psy9620 209 FGSS-TYLR--STCVYGGASKGPQ-------------------------------------------------------- 229 (453)
Q Consensus 209 ~~~~-~~~~--~~~~~gg~~~~~~-------------------------------------------------------- 229 (453)
.... ...+ ++..+.+.+....
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 0000 0000 1111111111100
Q ss_pred ----------------CCceEEEEeccCcHHHHHHHHHhhccce-EEEecccccccCccceeEEEEcc------ccchhh
Q psy9620 230 ----------------PDRQVLMWSATWPREVQKLAEDFLDSYI-QINIGSLTLSANHNIQQVVEVCA------EHEKEN 286 (453)
Q Consensus 230 ----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~------~~~k~~ 286 (453)
...|++-.+||+...++.+..-+--+-+ .+.++... ..-+..+.+-+ +.++..
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSP----s~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSP----SSEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCC----CccceEEEeCCCCCCcchhhhhh
Confidence 5678888888887666655443332222 22222221 11223333222 122223
Q ss_pred hHH---HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc----C----CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q psy9620 287 KLF---GLLNDISSKDENKTIIFAETKRKVDKITKSIQNY----G----WAAVGIHGDKSQQERDYVLKEFRNGRAGILV 355 (453)
Q Consensus 287 ~l~---~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLv 355 (453)
.+. .++.++.. .+-++|.||++++-|+.+....++. + -.+..+.|+-..++|..+..+.-.|+..-+|
T Consensus 510 ~i~E~s~~~~~~i~-~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giI 588 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQ-HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGII 588 (1034)
T ss_pred HHHHHHHHHHHHHH-cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEE
Confidence 332 23333322 3559999999999999877665542 1 1245678899999999999999999999999
Q ss_pred EeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 356 ATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 356 aT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
||++++-||||...+.|++.++|.|++.+.|..|||||.+++..++.+...
T Consensus 589 aTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~ 639 (1034)
T KOG4150|consen 589 ATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFL 639 (1034)
T ss_pred ecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEec
Confidence 999999999999999999999999999999999999999988877665543
No 122
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=4e-15 Score=152.26 Aligned_cols=259 Identities=19% Similarity=0.190 Sum_probs=186.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|.-..-.+..|+ |+.+.||-|||+++.+|++...+. |..|-|++..--||..=++++..+..
T Consensus 76 G~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred CC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHH
Confidence 55 89999988887777776 899999999999999998765443 44588899999999998899988888
Q ss_pred CCCceEEEEeCCccCCCC--------------------------------------------------------------
Q psy9620 212 STYLRSTCVYGGASKGPQ-------------------------------------------------------------- 229 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-------------------------------------------------------------- 229 (453)
.+++.+.++..+......
T Consensus 145 fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~ 224 (925)
T PRK12903 145 FLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGG 224 (925)
T ss_pred HhCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCC
Confidence 888888887665432211
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 230 -------------------------------------------------------------------------------- 229 (453)
Q Consensus 230 -------------------------------------------------------------------------------- 229 (453)
T Consensus 225 ~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYi 304 (925)
T PRK12903 225 QSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYI 304 (925)
T ss_pred CccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence
Q ss_pred -------------------------------------------------------CCceEEEEeccCcHHHHHHHHHhhc
Q psy9620 230 -------------------------------------------------------PDRQVLMWSATWPREVQKLAEDFLD 254 (453)
Q Consensus 230 -------------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~ 254 (453)
.-.++..||.|...+..++.+.|-.
T Consensus 305 V~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l 384 (925)
T PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM 384 (925)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCC
Confidence 1234556777765555555544433
Q ss_pred cceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCC
Q psy9620 255 SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDK 334 (453)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~ 334 (453)
+.+.+....+. ...-.....+....+|...+..-+..+. ....|+||.|.|.+..+.|+..|...+++...+++.
T Consensus 385 ~Vv~IPTnkP~---~R~D~~d~iy~t~~~K~~Aii~ei~~~~-~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk- 459 (925)
T PRK12903 385 RVNVVPTNKPV---IRKDEPDSIFGTKHAKWKAVVKEVKRVH-KKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK- 459 (925)
T ss_pred CEEECCCCCCe---eeeeCCCcEEEcHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc-
Confidence 33322211110 0000011233344556666665555543 346799999999999999999999999999889885
Q ss_pred CHHHHHHHHHHHhcC-CCcEEEEeccCccCCCCCCCc--------EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEc
Q psy9620 335 SQQERDYVLKEFRNG-RAGILVATDVAARGLDVDDVK--------FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFT 405 (453)
Q Consensus 335 ~~~~r~~~~~~f~~g-~~~vLvaT~~~~~GiDip~v~--------~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 405 (453)
+.+++..+-. ..| .-.|.|||++++||.||.--. |||....|.|..-=.|..||+||.|.+|.+..|++
T Consensus 460 -~~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 460 -QNAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred -chhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEe
Confidence 3445444443 445 567999999999999996322 89999999998888899999999999999999988
Q ss_pred CCC
Q psy9620 406 QQN 408 (453)
Q Consensus 406 ~~~ 408 (453)
-+|
T Consensus 538 LeD 540 (925)
T PRK12903 538 LDD 540 (925)
T ss_pred cch
Confidence 665
No 123
>KOG0953|consensus
Probab=99.65 E-value=7.3e-15 Score=141.20 Aligned_cols=245 Identities=20% Similarity=0.232 Sum_probs=152.1
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ 229 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 229 (453)
.+-++-++||.||||.- +|+++... ...++.-|.|-||..+++.+.+.+ +.+..++|.......
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~a--------ksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSA--------KSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVL 254 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhh--------ccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecC
Confidence 34467789999999954 46666543 338999999999999999999874 666666665544333
Q ss_pred C--------CceEEEEeccCc------HHHHHHHH---------Hhh---ccceEEEeccccc---------ccCcccee
Q psy9620 230 P--------DRQVLMWSATWP------REVQKLAE---------DFL---DSYIQINIGSLTL---------SANHNIQQ 274 (453)
Q Consensus 230 ~--------~~q~v~~SAT~~------~~~~~~~~---------~~~---~~~~~~~~~~~~~---------~~~~~i~~ 274 (453)
. .+-+-|+|-+.+ .+++.+.. .++ .+-+++.-+...+ +-......
T Consensus 255 ~~~~~a~hvScTVEM~sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TGd~vev~ 334 (700)
T KOG0953|consen 255 DNGNPAQHVSCTVEMVSVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTGDDVEVR 334 (700)
T ss_pred CCCCcccceEEEEEEeecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcCCeeEEE
Confidence 1 223334444433 22222110 000 0111111000000 00000001
Q ss_pred EEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCe-EEEEcCCCCHHHHHHHHHHHhc--CCC
Q psy9620 275 VVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQERDYVLKEFRN--GRA 351 (453)
Q Consensus 275 ~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~r~~~~~~f~~--g~~ 351 (453)
.++... .......++..+.+-.. --.|.|-|++++-.+...+.+.+.. +.+++|+++++.|.+--..|.+ +++
T Consensus 335 ~YeRl~---pL~v~~~~~~sl~nlk~-GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~ 410 (700)
T KOG0953|consen 335 EYERLS---PLVVEETALGSLSNLKP-GDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNEC 410 (700)
T ss_pred eecccC---cceehhhhhhhhccCCC-CCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCcc
Confidence 111111 11111122222222222 2356788899999999999988766 9999999999999999999997 899
Q ss_pred cEEEEeccCccCCCCCCCcEEEEcCCC---------CChhHHHHhhhcccCCCC---cceEEEEEcCCChHHHHHHH
Q psy9620 352 GILVATDVAARGLDVDDVKFVINFDYP---------NNSEDYIHRIGRTGRSDN---TGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 352 ~vLvaT~~~~~GiDip~v~~VI~~d~p---------~s~~~y~qr~GRagR~g~---~g~~~~~~~~~~~~~~~~l~ 416 (453)
+||||||++++|+|+ +++.||.+++- .+..+..|.+|||||.+. .|.+.+|. .+|...+++.+
T Consensus 411 dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~-~eDL~~L~~~l 485 (700)
T KOG0953|consen 411 DVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH-SEDLKLLKRIL 485 (700)
T ss_pred ceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee-HhhHHHHHHHH
Confidence 999999999999999 89999988764 357788999999999863 36666654 33444444433
No 124
>KOG0926|consensus
Probab=99.65 E-value=6.9e-15 Score=146.43 Aligned_cols=80 Identities=25% Similarity=0.445 Sum_probs=68.4
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE--------cCCCCCh----------hHHHHhh
Q psy9620 327 AVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN--------FDYPNNS----------EDYIHRI 388 (453)
Q Consensus 327 ~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~d~p~s~----------~~y~qr~ 388 (453)
|..+++-++..++..|++.-..|..-++|||++++..|.||+|.+||. ||.-..+ ++--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 677888899999999999999999999999999999999999999996 5544333 3447999
Q ss_pred hcccCCCCcceEEEEEcCC
Q psy9620 389 GRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 389 GRagR~g~~g~~~~~~~~~ 407 (453)
|||||.| +|+||-+|+..
T Consensus 687 GRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 687 GRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccCCCC-CCceeehhhhH
Confidence 9999995 89999998853
No 125
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.64 E-value=2e-14 Score=147.91 Aligned_cols=83 Identities=28% Similarity=0.265 Sum_probs=68.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|+ .|+++|.-+.-.+..| -|+.+.||.|||+++.+|++..... |..|.|++++..||.+-++++..+..
T Consensus 74 G~-r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~ 142 (870)
T CHL00122 74 GL-RHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYR 142 (870)
T ss_pred CC-CCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHH
Confidence 66 6889998877666555 4999999999999999999654432 45599999999999999999999988
Q ss_pred CCCceEEEEeCCcc
Q psy9620 212 STYLRSTCVYGGAS 225 (453)
Q Consensus 212 ~~~~~~~~~~gg~~ 225 (453)
.+++.+.++.++.+
T Consensus 143 ~LGLsvg~i~~~~~ 156 (870)
T CHL00122 143 FLGLTVGLIQEGMS 156 (870)
T ss_pred HcCCceeeeCCCCC
Confidence 89999988766544
No 126
>KOG0925|consensus
Probab=99.64 E-value=3.5e-14 Score=134.46 Aligned_cols=273 Identities=17% Similarity=0.248 Sum_probs=177.2
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
+..|...++++...+.+++.---..+..+.+.+..+.+++-+++++.||||||...--.++....... ..|.+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-------~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-------TGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-------cceee
Confidence 56677888888888888766333445556666777778999999999999999654333444333321 23778
Q ss_pred EcCCHHHHHHHHHHHHH-----hcCCCCceEE--EEeCCccC--------------------------------------
Q psy9620 192 LAPTRELAQQIQEVARD-----FGSSTYLRST--CVYGGASK-------------------------------------- 226 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~-----~~~~~~~~~~--~~~gg~~~-------------------------------------- 226 (453)
..|.|--|.+++..+.+ ++...+..+- -+.+....
T Consensus 97 TQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATD 176 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATD 176 (699)
T ss_pred cCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHH
Confidence 88999988887665543 2222221110 00000000
Q ss_pred ----------CCCCCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHH---
Q psy9620 227 ----------GPQPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLN--- 293 (453)
Q Consensus 227 ----------~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~--- 293 (453)
...++.++|.||||+.. .....|+.++..+.+.. . ..+..+ +.++ ...+.+...++
T Consensus 177 iLmGllk~v~~~rpdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg-~----~PvEi~--Yt~e-~erDylEaairtV~ 245 (699)
T KOG0925|consen 177 ILMGLLKEVVRNRPDLKLVVMSATLDA---EKFQRYFGNAPLLAVPG-T----HPVEIF--YTPE-PERDYLEAAIRTVL 245 (699)
T ss_pred HHHHHHHHHHhhCCCceEEEeecccch---HHHHHHhCCCCeeecCC-C----CceEEE--ecCC-CChhHHHHHHHHHH
Confidence 00088999999999754 34466777766665543 1 222222 2222 22233333333
Q ss_pred -hhhcCCCCcEEEEEcchhHHHHHHHHHHhc---------CCeEEEEcCCCCHHHHHHHHHHHhc---C--CCcEEEEec
Q psy9620 294 -DISSKDENKTIIFAETKRKVDKITKSIQNY---------GWAAVGIHGDKSQQERDYVLKEFRN---G--RAGILVATD 358 (453)
Q Consensus 294 -~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~---g--~~~vLvaT~ 358 (453)
.......+-+|||....++++..++.+... .+.|..+| +.++..+++-... | ..+|+|+|+
T Consensus 246 qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstn 321 (699)
T KOG0925|consen 246 QIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTN 321 (699)
T ss_pred HHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEec
Confidence 223345778999999999999888887742 35677888 3344444333321 2 368999999
Q ss_pred cCccCCCCCCCcEEEEcCC------------------CCChhHHHHhhhcccCCCCcceEEEEEcCC
Q psy9620 359 VAARGLDVDDVKFVINFDY------------------PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~------------------p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 407 (453)
+++..+.++.|.+||.-++ |-|..+-.||.|||||. .+|+|+.+++++
T Consensus 322 iaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 322 IAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred chheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 9999999999999996443 56778889999999998 799999999975
No 127
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.63 E-value=1.4e-15 Score=115.07 Aligned_cols=81 Identities=43% Similarity=0.774 Sum_probs=77.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC
Q psy9620 315 KITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS 394 (453)
Q Consensus 315 ~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~ 394 (453)
.+++.|...++.+..+|++++..+|..+++.|+++...|||+|+++++|+|+|++++||.+++|.+..+|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy9620 395 D 395 (453)
Q Consensus 395 g 395 (453)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 4
No 128
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.62 E-value=7.9e-14 Score=145.70 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHH---------------------HHHHHHHHHhc-CCCc
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQ---------------------ERDYVLKEFRN-GRAG 352 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~---------------------~r~~~~~~f~~-g~~~ 352 (453)
..+++|||.++..|..+++.|.+. +..++.+++..+.. ....++++|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999999999998664 24455666654332 22468889976 6889
Q ss_pred EEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC
Q psy9620 353 ILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS 394 (453)
Q Consensus 353 vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~ 394 (453)
|||+++++..|+|.|.+++++..-+..+ ..++|.+||+.|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 9999999999999999998777665554 4689999999994
No 129
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.62 E-value=2.8e-15 Score=130.36 Aligned_cols=83 Identities=43% Similarity=0.606 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCce
Q psy9620 137 TPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLR 216 (453)
Q Consensus 137 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~ 216 (453)
||+|.++|+.+.+++++++.||||+|||++|++|++..+... ...++||++|+++|++|+.+.+..++....++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 789999999999999999999999999999999999888764 13379999999999999999999999888889
Q ss_pred EEEEeCCcc
Q psy9620 217 STCVYGGAS 225 (453)
Q Consensus 217 ~~~~~gg~~ 225 (453)
+..++++..
T Consensus 75 ~~~~~~~~~ 83 (169)
T PF00270_consen 75 VVLLHGGQS 83 (169)
T ss_dssp EEEESTTSC
T ss_pred ccccccccc
Confidence 998888765
No 130
>KOG0951|consensus
Probab=99.60 E-value=6.7e-15 Score=152.64 Aligned_cols=321 Identities=15% Similarity=0.178 Sum_probs=199.5
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHcCCeeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-CCcEE
Q psy9620 77 NFFHPSPSVLNRSPHEVQAFRDKHQMTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMS-GSNMV 154 (453)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~l 154 (453)
.||...-+..|..+++.-.+...+.+..+.. .|.++.++..++....-....... |...+|+|.++++.+.+ +.+++
T Consensus 1085 ~~fi~lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~l-f~~~n~iqtqVf~~~y~~nd~v~ 1163 (1674)
T KOG0951|consen 1085 QYFIRLVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETL-FQDFNPIQTQVFTSLYNTNDNVL 1163 (1674)
T ss_pred ceEEEEeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhh-ccccCCceEEEEeeeecccceEE
Confidence 3455555556666666666666666655554 555666665554332111111122 44569999999999885 66789
Q ss_pred EEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH-HHHHhcCCCCceEEEEeCCccCCCC----
Q psy9620 155 GVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE-VARDFGSSTYLRSTCVYGGASKGPQ---- 229 (453)
Q Consensus 155 i~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~-~~~~~~~~~~~~~~~~~gg~~~~~~---- 229 (453)
+.+|+|||||.++.++++. +....++++++|..+.+..++. +.+++....+..++.+.|..+.+..
T Consensus 1164 vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~ 1234 (1674)
T KOG0951|consen 1164 VGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQK 1234 (1674)
T ss_pred EecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhh
Confidence 9999999999999888774 2356679999999999887765 4556777788888888887765543
Q ss_pred -----------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccc----------
Q psy9620 230 -----------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL---------- 264 (453)
Q Consensus 230 -----------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------- 264 (453)
...--+++| | +.++.++.++.-.+.+...
T Consensus 1235 ~~vii~tpe~~d~lq~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~-----r~ia~q~~k~ir~v~ls~~lana~d~ig~ 1308 (1674)
T KOG0951|consen 1235 GQVIISTPEQWDLLQSIQQVDLFIVDELHLIGGVYGAVYEVICS-M-----RYIASQLEKKIRVVALSSSLANARDLIGA 1308 (1674)
T ss_pred cceEEechhHHHHHhhhhhcceEeeehhhhhcccCCceEEEEee-H-----HHHHHHHHhheeEEEeehhhccchhhccc
Confidence 112223333 2 2233333222111111000
Q ss_pred ---------ccccCccceeEEEEccccchhhhHHHHHHh----h--hcCCCCcEEEEEcchhHHHHHHHHHHhc------
Q psy9620 265 ---------TLSANHNIQQVVEVCAEHEKENKLFGLLND----I--SSKDENKTIIFAETKRKVDKITKSIQNY------ 323 (453)
Q Consensus 265 ---------~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~----~--~~~~~~~~lVF~~s~~~~~~l~~~L~~~------ 323 (453)
.........-.+..+...........+.+. + ...+.++.+||+++++.|..++..|-..
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~ 1388 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEP 1388 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcH
Confidence 000011111122222222222233332221 1 1234679999999999998877665321
Q ss_pred ----------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cC------C
Q psy9620 324 ----------------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FD------Y 377 (453)
Q Consensus 324 ----------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d------~ 377 (453)
.+...+=|.+++..+.+-+...|..|.+.|+|...- .+|+-....-+|+. || .
T Consensus 1389 ~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~ 1467 (1674)
T KOG0951|consen 1389 DYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYE 1467 (1674)
T ss_pred HHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccc
Confidence 112222288999999999999999999999999887 88877754444442 33 2
Q ss_pred CCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 378 PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 378 p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
+-++.+..|++|+|.| .|+|+++....+..++++++.
T Consensus 1468 ~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~ 1504 (1674)
T KOG0951|consen 1468 DYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLY 1504 (1674)
T ss_pred cCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhcc
Confidence 3448999999999998 478999999998888887653
No 131
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.57 E-value=6.1e-13 Score=143.94 Aligned_cols=134 Identities=14% Similarity=0.210 Sum_probs=95.2
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCC--eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW--AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGL 364 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 364 (453)
.+...+..+....++++|||++|.+..+.+++.|..... ....+.-+++...|..++++|+.++..||++|..+.+||
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGV 818 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGI 818 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCcc
Confidence 344445455545577999999999999999999975422 122222234445688999999999899999999999999
Q ss_pred CCCCC--cEEEEcCCCC----C--------------------------hhHHHHhhhcccCCCCcceEEEEEcCC--ChH
Q psy9620 365 DVDDV--KFVINFDYPN----N--------------------------SEDYIHRIGRTGRSDNTGTSYTFFTQQ--NSR 410 (453)
Q Consensus 365 Dip~v--~~VI~~d~p~----s--------------------------~~~y~qr~GRagR~g~~g~~~~~~~~~--~~~ 410 (453)
|+|+- ++||...+|. + +..+.|-+||.-|...+--+++++++. ..+
T Consensus 819 D~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~ 898 (928)
T PRK08074 819 DIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTS 898 (928)
T ss_pred ccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccch
Confidence 99964 6788766553 1 223478899999997664456666654 455
Q ss_pred HHHHHHHHHH
Q psy9620 411 QAKDLIDVLT 420 (453)
Q Consensus 411 ~~~~l~~~l~ 420 (453)
+-+.+++.|-
T Consensus 899 Yg~~~l~sLP 908 (928)
T PRK08074 899 YGKYFLESLP 908 (928)
T ss_pred HHHHHHHhCC
Confidence 6677766654
No 132
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.56 E-value=1.1e-13 Score=139.86 Aligned_cols=252 Identities=19% Similarity=0.202 Sum_probs=150.8
Q ss_pred CCCHHHHHHHHHHh----cC-CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 135 RPTPIQAQGWPIAM----SG-SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~----~g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.++.+|..||..+. +| +.+|+++.||+|||.++ +.++..|.+.. .-.++|+|+.+++|..|.+..+..+
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~-----~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG-----WVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc-----hhheeeEEechHHHHHHHHHHHHHh
Confidence 68999999998655 34 34899999999999876 44555555532 3567999999999999999988887
Q ss_pred cCCCCceE-----------EEEeC----------CccCCCC-----------------------------CCceEEEEec
Q psy9620 210 GSSTYLRS-----------TCVYG----------GASKGPQ-----------------------------PDRQVLMWSA 239 (453)
Q Consensus 210 ~~~~~~~~-----------~~~~g----------g~~~~~~-----------------------------~~~q~v~~SA 239 (453)
........ .++.+ +...... -+.-++.++|
T Consensus 239 ~P~~~~~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~dYFdA~~~gLTA 318 (875)
T COG4096 239 LPFGTKMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILDYFDAATQGLTA 318 (875)
T ss_pred CCCccceeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHHHHHHHHHHhhcc
Confidence 54321111 00000 0000000 1112234488
Q ss_pred cCcHHHHHHHHHhh-ccce--------------------EEEe--cccccccC----------ccc---eeEEEEcc---
Q psy9620 240 TWPREVQKLAEDFL-DSYI--------------------QINI--GSLTLSAN----------HNI---QQVVEVCA--- 280 (453)
Q Consensus 240 T~~~~~~~~~~~~~-~~~~--------------------~~~~--~~~~~~~~----------~~i---~~~~~~~~--- 280 (453)
|+...+....-.|+ ..|+ .+.. ...+.... ..+ .+.+....
T Consensus 319 TP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr 398 (875)
T COG4096 319 TPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDR 398 (875)
T ss_pred CcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccch
Confidence 87653332222222 1111 1111 00000000 000 00000000
Q ss_pred ---ccchhhhHHHHHHhhhcC-----CCCcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHh
Q psy9620 281 ---EHEKENKLFGLLNDISSK-----DENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFR 347 (453)
Q Consensus 281 ---~~~k~~~l~~ll~~~~~~-----~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~ 347 (453)
-......+...+.+.+.. .-.|+||||.+..+|+.+...|.+. +--+..+.++-. +-...++.|.
T Consensus 399 ~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~ 476 (875)
T COG4096 399 TLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFI 476 (875)
T ss_pred hccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHH
Confidence 001112223333333221 1469999999999999999999875 334667777543 3334455555
Q ss_pred c--CCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC
Q psy9620 348 N--GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS 394 (453)
Q Consensus 348 ~--g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~ 394 (453)
. .-.+|.|+.+++..|||+|.|.+++.+..-.|..-|.||+||.-|.
T Consensus 477 ~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 477 DKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 4 3467889999999999999999999999999999999999999886
No 133
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=1.7e-12 Score=133.68 Aligned_cols=82 Identities=24% Similarity=0.230 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
|. .|+++|.-.--.+..|+ |+.+.||-|||+++.+|++..... |..|-||+++..||..-++++..+..
T Consensus 83 G~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 83 GM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred CC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 55 78999988777777776 899999999999999999866543 45599999999999999999999988
Q ss_pred CCCceEEEEeCCc
Q psy9620 212 STYLRSTCVYGGA 224 (453)
Q Consensus 212 ~~~~~~~~~~gg~ 224 (453)
.+++.+.++..+.
T Consensus 152 ~LGLtvg~i~~~~ 164 (939)
T PRK12902 152 FLGLSVGLIQQDM 164 (939)
T ss_pred HhCCeEEEECCCC
Confidence 8899998886654
No 134
>COG4889 Predicted helicase [General function prediction only]
Probab=99.52 E-value=2e-13 Score=137.29 Aligned_cols=123 Identities=21% Similarity=0.305 Sum_probs=91.8
Q ss_pred cEEEEEcchhHHHHHHHHHHh-------------cCCe--EEEEcCCCCHHHHHHHHHH---HhcCCCcEEEEeccCccC
Q psy9620 302 KTIIFAETKRKVDKITKSIQN-------------YGWA--AVGIHGDKSQQERDYVLKE---FRNGRAGILVATDVAARG 363 (453)
Q Consensus 302 ~~lVF~~s~~~~~~l~~~L~~-------------~~~~--~~~~h~~~~~~~r~~~~~~---f~~g~~~vLvaT~~~~~G 363 (453)
++|-||.+.++...+++.+.. .++. +..+.|.|...+|...+.. |...+++||---..+++|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 789999999888777766643 1333 4455688999999554443 456789999999999999
Q ss_pred CCCCCCcEEEEcCCCCChhHHHHhhhcccCCC--Cc-ceEEEEEc-------------CCChHHHHHHHHHHHhcCC
Q psy9620 364 LDVDDVKFVINFDYPNNSEDYIHRIGRTGRSD--NT-GTSYTFFT-------------QQNSRQAKDLIDVLTESNH 424 (453)
Q Consensus 364 iDip~v~~VI~~d~p~s~~~y~qr~GRagR~g--~~-g~~~~~~~-------------~~~~~~~~~l~~~l~~~~~ 424 (453)
+|+|..+.||.+|+..++.+.+|.+||+.|-. ++ |..|+=+. ..+...+.++++.|+.+..
T Consensus 542 VDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnALRShD~ 618 (1518)
T COG4889 542 VDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKALRSHDE 618 (1518)
T ss_pred CCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999999999962 22 43333221 2345567777777776655
No 135
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.47 E-value=3.2e-11 Score=123.10 Aligned_cols=130 Identities=15% Similarity=0.112 Sum_probs=89.5
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc----CCCcEEEEeccCccC
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN----GRAGILVATDVAARG 363 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~----g~~~vLvaT~~~~~G 363 (453)
+.+.+..+.....+.+||.+.|....+.+++.|...--..+.+.|+.+ .+...+++|+. +...||++|+.+.+|
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweG 535 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTG 535 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccc
Confidence 444444455556789999999999999999999764223344566432 45668888887 478999999999999
Q ss_pred CCC----------CCCcEEEEcCCCCC-------------------------hhHHHHhhhcccCCCCc--ceEEEEEcC
Q psy9620 364 LDV----------DDVKFVINFDYPNN-------------------------SEDYIHRIGRTGRSDNT--GTSYTFFTQ 406 (453)
Q Consensus 364 iDi----------p~v~~VI~~d~p~s-------------------------~~~y~qr~GRagR~g~~--g~~~~~~~~ 406 (453)
||+ ..+++||...+|.. ...+.|-+||.-|...+ --.++++++
T Consensus 536 vDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 536 IDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDG 615 (636)
T ss_pred cccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeC
Confidence 999 34788988776621 22357899999998655 334445554
Q ss_pred C-ChHHHHHHHHHH
Q psy9620 407 Q-NSRQAKDLIDVL 419 (453)
Q Consensus 407 ~-~~~~~~~l~~~l 419 (453)
. ...+.+.+.+..
T Consensus 616 R~~~~yg~~~~~~~ 629 (636)
T TIGR03117 616 RIHWPYMESWQESV 629 (636)
T ss_pred CCCchhHHHHHHHH
Confidence 4 334444444443
No 136
>KOG1123|consensus
Probab=99.42 E-value=1.9e-12 Score=123.24 Aligned_cols=244 Identities=20% Similarity=0.249 Sum_probs=149.5
Q ss_pred CCCCHHHHHHHHHHh-cC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 134 DRPTPIQAQGWPIAM-SG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~-~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..++|+|...+..++ +| ++-||+.|.|+|||++-+-++. .+ ...+||||.+--.++||...+..++
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 478999999999988 33 5889999999999987644433 22 3459999999999999999999886
Q ss_pred CCCCceEEEEeCCccCCCCCCceE--------------------------------------------------------
Q psy9620 211 SSTYLRSTCVYGGASKGPQPDRQV-------------------------------------------------------- 234 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~~~~~~~~q~-------------------------------------------------------- 234 (453)
.-..-.++....+.........-+
T Consensus 370 ti~d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aH 449 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAH 449 (776)
T ss_pred ccCccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHH
Confidence 444434443333333222222222
Q ss_pred --EEEeccCcHHHHHHHH-HhhccceEEEecccccccCc---cceeEEEEcc-----------------------ccchh
Q psy9620 235 --LMWSATWPREVQKLAE-DFLDSYIQINIGSLTLSANH---NIQQVVEVCA-----------------------EHEKE 285 (453)
Q Consensus 235 --v~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-----------------------~~~k~ 285 (453)
+.++||+-.+-.++.. .|+-.|......-.++.... .++..-.+|+ ...|
T Consensus 450 cKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~K- 528 (776)
T KOG1123|consen 450 CKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNK- 528 (776)
T ss_pred hhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcch-
Confidence 3344443221111100 00000000000000000000 0111111111 1112
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccCccCC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN-GRAGILVATDVAARGL 364 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gi 364 (453)
.+..++|-......+.++|||..+.-.....+-.|.+ .+++|..++.||..+++.|+. ..++.++.+.+....|
T Consensus 529 FraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSi 603 (776)
T KOG1123|consen 529 FRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSI 603 (776)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccc
Confidence 2233333333344567999999887766666655532 367899999999999999995 5789999999999999
Q ss_pred CCCCCcEEEEcCCC-CChhHHHHhhhcccCC
Q psy9620 365 DVDDVKFVINFDYP-NNSEDYIHRIGRTGRS 394 (453)
Q Consensus 365 Dip~v~~VI~~d~p-~s~~~y~qr~GRagR~ 394 (453)
|+|..+++|+...- .|-.+=.||.||.-|+
T Consensus 604 DLPEAnvLIQISSH~GSRRQEAQRLGRILRA 634 (776)
T KOG1123|consen 604 DLPEANVLIQISSHGGSRRQEAQRLGRILRA 634 (776)
T ss_pred cCCcccEEEEEcccccchHHHHHHHHHHHHH
Confidence 99999999987654 4566778999988886
No 137
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.41 E-value=2.2e-11 Score=128.64 Aligned_cols=137 Identities=19% Similarity=0.266 Sum_probs=94.4
Q ss_pred hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCe-EEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEeccCc
Q psy9620 284 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQERDYVLKEFRNGRA-GILVATDVAA 361 (453)
Q Consensus 284 k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~ 361 (453)
-...+...+..+....++++|||++|.+..+.+++.|...... ....++.. .+...++.|+...- .++|+|..++
T Consensus 463 ~~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~ 539 (654)
T COG1199 463 LLAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFW 539 (654)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeecccc
Confidence 3444555555565566779999999999999999999876552 33445543 44578888886655 8999999999
Q ss_pred cCCCCCCC--cEEEEcCCCC------------------------------ChhHHHHhhhcccCCCCcceEEEEEcCCC-
Q psy9620 362 RGLDVDDV--KFVINFDYPN------------------------------NSEDYIHRIGRTGRSDNTGTSYTFFTQQN- 408 (453)
Q Consensus 362 ~GiDip~v--~~VI~~d~p~------------------------------s~~~y~qr~GRagR~g~~g~~~~~~~~~~- 408 (453)
+|||+|+- ..||...+|. .+..+.|-+||+-|...+--.+++++..-
T Consensus 540 EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~ 619 (654)
T COG1199 540 EGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYA 619 (654)
T ss_pred CcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccch
Confidence 99999965 5677766653 23345899999999865544555555532
Q ss_pred -hHHHHHHHHHHHhcC
Q psy9620 409 -SRQAKDLIDVLTESN 423 (453)
Q Consensus 409 -~~~~~~l~~~l~~~~ 423 (453)
.+.-+.+.+.|....
T Consensus 620 ~~~y~~~l~~~l~~~~ 635 (654)
T COG1199 620 TKRYGKLLLDSLPPFP 635 (654)
T ss_pred hhhHHHHHHHhCCCCc
Confidence 224455555554433
No 138
>KOG0387|consensus
Probab=99.40 E-value=4e-11 Score=120.30 Aligned_cols=125 Identities=20% Similarity=0.318 Sum_probs=106.6
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHH-hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCc--EEEEec
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQ-NYGWAAVGIHGDKSQQERDYVLKEFRNGRAG--ILVATD 358 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~--vLvaT~ 358 (453)
.-|...+..++...... ..++|+|..++...+.|..+|. ..++..+.+.|..+...|..++++|.+++.- +|++|.
T Consensus 529 sGKm~vl~~ll~~W~kq-g~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTr 607 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQ-GDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTR 607 (923)
T ss_pred cchHHHHHHHHHHHhhC-CCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEec
Confidence 34556677777766544 5599999999999999999999 5899999999999999999999999987643 678899
Q ss_pred cCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcc--eEEEEEcCC
Q psy9620 359 VAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTG--TSYTFFTQQ 407 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g--~~~~~~~~~ 407 (453)
+-.-|+++-..+.||.||+-+|+..=.|..-||-|.|++- .+|-|++..
T Consensus 608 vGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 608 VGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred ccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 9999999999999999999999999999999999998764 355556654
No 139
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=1.8e-11 Score=127.56 Aligned_cols=125 Identities=14% Similarity=0.214 Sum_probs=97.6
Q ss_pred ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 281 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 281 ~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
..+|...+++-+..+. ....|+||-+.|.+..+.|++.|...+++..++++... +++.-+-.-.--.-.|-|||+++
T Consensus 610 ~~eK~~Aii~ei~~~~-~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~AG~~GaVTIATNMA 686 (1112)
T PRK12901 610 KREKYNAVIEEITELS-EAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAEAGQPGTVTIATNMA 686 (1112)
T ss_pred HHHHHHHHHHHHHHHH-HCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHhcCCCCcEEEeccCc
Confidence 3445555555555443 35779999999999999999999999998777777533 44443333333356799999999
Q ss_pred ccCCCCC--------CCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 361 ARGLDVD--------DVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 361 ~~GiDip--------~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
+||.||. +=-+||-...+.|..--.|..||+||.|.+|.+..|++-+|
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 9999996 22389999999999999999999999999999999988665
No 140
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.36 E-value=4.8e-11 Score=115.97 Aligned_cols=187 Identities=16% Similarity=0.223 Sum_probs=142.7
Q ss_pred CCceEEEEeccCcHHHHHHHHHhhccce---EEEeccc----ccccCccceeEEEEccc----cchhhhHHH----HHHh
Q psy9620 230 PDRQVLMWSATWPREVQKLAEDFLDSYI---QINIGSL----TLSANHNIQQVVEVCAE----HEKENKLFG----LLND 294 (453)
Q Consensus 230 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~i~~~~~~~~~----~~k~~~l~~----ll~~ 294 (453)
.-+|+|++|+...+++..+....+.|.. .+..... -......+.|.+...+. .+...++.. ++-.
T Consensus 214 ~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~ 293 (442)
T PF06862_consen 214 YYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQ 293 (442)
T ss_pred heeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHH
Confidence 4589999999999999999999887752 2211111 11334455666654332 112223322 3333
Q ss_pred hh-cCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc--cCCCCCCCcE
Q psy9620 295 IS-SKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA--RGLDVDDVKF 371 (453)
Q Consensus 295 ~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~--~GiDip~v~~ 371 (453)
+. ......+|||++|.-+--.|.++|++.++....+|...++.+-..+-..|..|+.+||+.|.-+. +-..|.++.+
T Consensus 294 l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~ 373 (442)
T PF06862_consen 294 LKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRH 373 (442)
T ss_pred hhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcE
Confidence 34 44567999999999999999999999999999999999999999999999999999999999766 6788999999
Q ss_pred EEEcCCCCChhHHHHhhhcccCCC------CcceEEEEEcCCChHHHHHHH
Q psy9620 372 VINFDYPNNSEDYIHRIGRTGRSD------NTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 372 VI~~d~p~s~~~y~qr~GRagR~g------~~g~~~~~~~~~~~~~~~~l~ 416 (453)
||.|.+|..+.-|...+.-..... ....|.++|+.-|.-.++.++
T Consensus 374 viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 374 VIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred EEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 999999999998877775444432 257899999998877777766
No 141
>KOG2340|consensus
Probab=99.30 E-value=5.8e-11 Score=114.04 Aligned_cols=186 Identities=17% Similarity=0.218 Sum_probs=134.6
Q ss_pred CceEEEEeccCcHHHHHHHHHhhccceEE----------EecccccccCccceeEEEEccccchhhhHHHHHHhhhcC--
Q psy9620 231 DRQVLMWSATWPREVQKLAEDFLDSYIQI----------NIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSK-- 298 (453)
Q Consensus 231 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~-- 298 (453)
-+|+++||+-..+.+..+...++.|..-. .+........+.++.+...........++..++..|...
T Consensus 469 ~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~ 548 (698)
T KOG2340|consen 469 FRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLI 548 (698)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhc
Confidence 47999999999888888888888764311 111222222233322222122233344555555555332
Q ss_pred --CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc--cCCCCCCCcEEEE
Q psy9620 299 --DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA--RGLDVDDVKFVIN 374 (453)
Q Consensus 299 --~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~--~GiDip~v~~VI~ 374 (453)
...-+|||+++.-+--++.++|.+..+....+|...++..-.++-+.|-.|+.+||+.|.-+. +-.+|.+|..||.
T Consensus 549 k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVf 628 (698)
T KOG2340|consen 549 KRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVF 628 (698)
T ss_pred ccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEE
Confidence 234579999999999999999999999999999999999999999999999999999999876 7789999999999
Q ss_pred cCCCCChhHH---HHhhhcccCCC----CcceEEEEEcCCChHHHHHHH
Q psy9620 375 FDYPNNSEDY---IHRIGRTGRSD----NTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 375 ~d~p~s~~~y---~qr~GRagR~g----~~g~~~~~~~~~~~~~~~~l~ 416 (453)
|.+|.++.-| +.+.+|+.-.| ..-.|.++++.-|.-.+..++
T Consensus 629 YqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 629 YQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred ecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 9999998766 56666654333 235788999987766665554
No 142
>KOG0390|consensus
Probab=99.29 E-value=4.8e-10 Score=115.07 Aligned_cols=102 Identities=17% Similarity=0.311 Sum_probs=81.7
Q ss_pred cEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC--c-EEEEeccCccCCCCCCCcEEEEcCCC
Q psy9620 302 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRA--G-ILVATDVAARGLDVDDVKFVINFDYP 378 (453)
Q Consensus 302 ~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~--~-vLvaT~~~~~GiDip~v~~VI~~d~p 378 (453)
++.+..|-+...+.+...+.-.|+.+..+||.|+..+|..+++.|.+-.. . .|.+|.+.+.||++-+.+.||.||..
T Consensus 597 ~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~d 676 (776)
T KOG0390|consen 597 KSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPD 676 (776)
T ss_pred EEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCC
Confidence 33333344444455555555569999999999999999999999996443 3 55677888999999999999999999
Q ss_pred CChhHHHHhhhcccCCCCcceEEEE
Q psy9620 379 NNSEDYIHRIGRTGRSDNTGTSYTF 403 (453)
Q Consensus 379 ~s~~~y~qr~GRagR~g~~g~~~~~ 403 (453)
+|++.=.|.+.|+-|.|++-.|+++
T Consensus 677 WNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 677 WNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred CCchhHHHHHHHhccCCCcceEEEE
Confidence 9999999999999999987665544
No 143
>KOG0385|consensus
Probab=99.25 E-value=4.9e-10 Score=112.17 Aligned_cols=126 Identities=20% Similarity=0.309 Sum_probs=105.7
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC---CcEEEEec
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR---AGILVATD 358 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vLvaT~ 358 (453)
.-|...|..+|..+.. .+.++|||-.-....+.|-+++.-.++....+.|.++.++|...++.|.... .-.|++|.
T Consensus 470 SGKm~vLDkLL~~Lk~-~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKE-QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred CcceehHHHHHHHHHh-CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 3455555556665543 4789999999999999999999889999999999999999999999998644 44789999
Q ss_pred cCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcce--EEEEEcCCC
Q psy9620 359 VAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGT--SYTFFTQQN 408 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~~ 408 (453)
+.+-|||+...+.||.||..+++..=+|..-||-|-|+.-. +|-|++++.
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 99999999999999999999999999999999999987644 555666553
No 144
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.23 E-value=8.5e-10 Score=114.23 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=44.2
Q ss_pred EecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCcc
Q psy9620 156 VAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGAS 225 (453)
Q Consensus 156 ~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~ 225 (453)
.+.+|||||.+|+-.+-..+.. |..+|||+|...|+.|+.+.+++.+.. ..+..++++.+
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~ 225 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLG 225 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCC
Confidence 3446999999997766555543 556999999999999999999987531 34555555543
No 145
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.21 E-value=4.4e-09 Score=111.53 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=85.3
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCC-------eEEEEcCCCCHHHHHHHHHHHhc----CCCcEE
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW-------AAVGIHGDKSQQERDYVLKEFRN----GRAGIL 354 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~-------~~~~~h~~~~~~~r~~~~~~f~~----g~~~vL 354 (453)
..+...|..+.....+.+|||++|....+.+++.+...+. ..+++ ..-...++..++++|+. ++-.||
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~-E~~~~~~~~~~l~~f~~~~~~~~gavL 586 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFV-ETKDAQETSDALERYKQAVSEGRGAVL 586 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEE-eCCCcchHHHHHHHHHHHHhcCCceEE
Confidence 3455555555555578999999999999999998875432 12222 22222578899999964 456799
Q ss_pred EEe--ccCccCCCCCC--CcEEEEcCCCC-Ch------------------------------hHHHHhhhcccCCCCcce
Q psy9620 355 VAT--DVAARGLDVDD--VKFVINFDYPN-NS------------------------------EDYIHRIGRTGRSDNTGT 399 (453)
Q Consensus 355 vaT--~~~~~GiDip~--v~~VI~~d~p~-s~------------------------------~~y~qr~GRagR~g~~g~ 399 (453)
+|+ ..+++|||+++ .+.||..++|. +. ....|-+||+-|...+=-
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G 666 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYG 666 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceE
Confidence 999 88999999997 57899888875 11 112688999999966655
Q ss_pred EEEEEcCC
Q psy9620 400 SYTFFTQQ 407 (453)
Q Consensus 400 ~~~~~~~~ 407 (453)
+++++++.
T Consensus 667 ~iillD~R 674 (705)
T TIGR00604 667 SIVLLDKR 674 (705)
T ss_pred EEEEEehh
Confidence 66666543
No 146
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.17 E-value=3.8e-10 Score=100.19 Aligned_cols=126 Identities=42% Similarity=0.620 Sum_probs=94.7
Q ss_pred CCCCCCCHHHHHHHHHHhcC-CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 131 QGFDRPTPIQAQGWPIAMSG-SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.++..++++|.++++.++.. ++++++++||+|||.+++.+++..+.... ...+||++|++.++.|+.+.+..+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45779999999999999988 99999999999999999888888765432 346999999999999999998887
Q ss_pred cCCCCceEEEEeCCccC---------CC-C--------------------------------------------------
Q psy9620 210 GSSTYLRSTCVYGGASK---------GP-Q-------------------------------------------------- 229 (453)
Q Consensus 210 ~~~~~~~~~~~~gg~~~---------~~-~-------------------------------------------------- 229 (453)
............++... .. .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 64433122222222110 00 0
Q ss_pred -CCceEEEEeccCcHHHHHHHHHhhccceEEEec
Q psy9620 230 -PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 230 -~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
...+++++|||++.+.......++.+.+.+...
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 368899999999988888888887766655544
No 147
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.07 E-value=3.7e-09 Score=111.18 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=71.1
Q ss_pred EEEEEcchhHHHHHHHHHHhc------CCeEEEEcCCCCHHHHHHHHHHH----------------------hc----CC
Q psy9620 303 TIIFAETKRKVDKITKSIQNY------GWAAVGIHGDKSQQERDYVLKEF----------------------RN----GR 350 (453)
Q Consensus 303 ~lVF~~s~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~~~~~f----------------------~~----g~ 350 (453)
.||-+++++.+-.+++.|... .+.+.++|+......|..+++.+ .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 478888899998888888754 23467889998887777666553 12 46
Q ss_pred CcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCC
Q psy9620 351 AGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDN 396 (453)
Q Consensus 351 ~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~ 396 (453)
..|+|+|++++.|+|+ +.+.+|-- |.++...+|++||+-|.+.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~~--~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIAD--PSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeeec--cCcHHHHHHHhhccccccc
Confidence 6899999999999999 67766653 5669999999999999853
No 148
>KOG1000|consensus
Probab=98.98 E-value=2.6e-08 Score=95.44 Aligned_cols=105 Identities=15% Similarity=0.276 Sum_probs=90.7
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcE-EEEeccCccCCCCCCCcEEEEcC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG-RAGI-LVATDVAARGLDVDDVKFVINFD 376 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~GiDip~v~~VI~~d 376 (453)
...|.+|||....-.+.+..++.+.++..+.+.|..+..+|....+.|... +++| +++-.++..||++...+.|++..
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaE 570 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAE 570 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEE
Confidence 456999999999999999999999999999999999999999999999954 4554 34556788999999999999999
Q ss_pred CCCChhHHHHhhhcccCCCCcceEEEE
Q psy9620 377 YPNNSEDYIHRIGRTGRSDNTGTSYTF 403 (453)
Q Consensus 377 ~p~s~~~y~qr~GRagR~g~~g~~~~~ 403 (453)
+++++.-.+|.=-|+-|.|++..+.+.
T Consensus 571 L~wnPgvLlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 571 LHWNPGVLLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred ecCCCceEEechhhhhhccccceeeEE
Confidence 999999888888888888877554433
No 149
>KOG0384|consensus
Probab=98.98 E-value=4.3e-09 Score=110.45 Aligned_cols=110 Identities=18% Similarity=0.324 Sum_probs=100.6
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc---CCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN---GRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~---g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
.+++||||-.-....+.|+++|...+++...|.|.+..+.|.++++.|.. ...-+|+||.+-+-|||+-..+.||.|
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 46799999999999999999999999999999999999999999999984 456799999999999999999999999
Q ss_pred CCCCChhHHHHhhhcccCCCCcc--eEEEEEcCCC
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTG--TSYTFFTQQN 408 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g--~~~~~~~~~~ 408 (453)
|.-+|+..=+|..-||-|-|+.- .+|-|++.+.
T Consensus 778 DSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 778 DSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred CCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 99999999999999999998764 4777787764
No 150
>KOG0389|consensus
Probab=98.94 E-value=3.8e-08 Score=99.22 Aligned_cols=126 Identities=22% Similarity=0.332 Sum_probs=107.0
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC--CcEEEEecc
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR--AGILVATDV 359 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vLvaT~~ 359 (453)
..|...|..+|..+.. ++.++|||-.--...+.|...|...++....+.|...-.+|..+++.|...+ .-+|++|.+
T Consensus 760 SgK~r~L~~LLp~~k~-~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKA 838 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKK-KGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKA 838 (941)
T ss_pred hhhHhHHHHHHHHHhh-cCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeecc
Confidence 3466677777777654 3579999999999999999999999999999999999999999999998765 347899999
Q ss_pred CccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc--ceEEEEEcCCC
Q psy9620 360 AARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT--GTSYTFFTQQN 408 (453)
Q Consensus 360 ~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~~ 408 (453)
-+-||++-..++||.+|...++-+=.|.--||-|.|+. -.++-|++...
T Consensus 839 GG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 839 GGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred CcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 99999999999999999998888888888888888754 55677777654
No 151
>KOG0392|consensus
Probab=98.94 E-value=9.1e-09 Score=107.82 Aligned_cols=127 Identities=18% Similarity=0.299 Sum_probs=102.4
Q ss_pred cchhhhHHHHHHhhhc-------------CCCCcEEEEEcchhHHHHHHHHHHhcCC---eEEEEcCCCCHHHHHHHHHH
Q psy9620 282 HEKENKLFGLLNDISS-------------KDENKTIIFAETKRKVDKITKSIQNYGW---AAVGIHGDKSQQERDYVLKE 345 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~-------------~~~~~~lVF~~s~~~~~~l~~~L~~~~~---~~~~~h~~~~~~~r~~~~~~ 345 (453)
..|...|.++|.++-- -.+.++||||+-+...+.+.+.|.+.-. .-..+.|..++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 3456666677765511 1246999999999999999999876533 23468999999999999999
Q ss_pred HhcC-CCcEE-EEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcce--EEEEEcCCC
Q psy9620 346 FRNG-RAGIL-VATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGT--SYTFFTQQN 408 (453)
Q Consensus 346 f~~g-~~~vL-vaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~~ 408 (453)
|.++ .++|| ++|.+-+-|+|+-..+.||+++-.+|+-.=+|.+-||-|-|++-. +|-+++...
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 9998 67877 566799999999999999999999998888999999999987744 667777653
No 152
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.87 E-value=3.1e-08 Score=102.32 Aligned_cols=124 Identities=16% Similarity=0.235 Sum_probs=88.0
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA 361 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 361 (453)
..|...++.-+.... ....|+||-..+.+..+.+.+.|.+.+++...+...- .+++.-+-...--.-.|-|||++++
T Consensus 412 ~~K~~Aiv~~I~~~~-~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~--h~~EA~Iia~AG~~gaVTiATNMAG 488 (822)
T COG0653 412 EEKFKAIVEDIKERH-EKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKN--HAREAEIIAQAGQPGAVTIATNMAG 488 (822)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEcCcceecchhHHHHHHhcCCCceeecccc--HHHHHHHHhhcCCCCcccccccccc
Confidence 344444444444432 3467999999999999999999999999887777643 3555555555544557889999999
Q ss_pred cCCCCCCCc-----------EEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCC
Q psy9620 362 RGLDVDDVK-----------FVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 362 ~GiDip~v~-----------~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
||-||.--. +||-..--.|-.-=-|..||+||.|.+|.+-.|++-+|
T Consensus 489 RGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 489 RGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred CCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 999985222 34444333344334588999999999998887776543
No 153
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.83 E-value=6.8e-07 Score=92.13 Aligned_cols=240 Identities=13% Similarity=0.161 Sum_probs=144.8
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC-----C-----C------c
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS-----T-----Y------L 215 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~-----~-----~------~ 215 (453)
-.++.+|.|||||.+..-++-..+.. ...++|+|+..+.|+.++...++...-. . . -
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~-------~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKN-------PDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccC-------CCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccC
Confidence 45788999999997654433332221 3556999999999999999988754210 0 0 0
Q ss_pred eEEEEeCCcc------CC-CC----------------------------------CCceEEEEeccCcHHHHHHHHHhhc
Q psy9620 216 RSTCVYGGAS------KG-PQ----------------------------------PDRQVLMWSATWPREVQKLAEDFLD 254 (453)
Q Consensus 216 ~~~~~~gg~~------~~-~~----------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~ 254 (453)
+..+...... .. .+ ....+|++-|++.....++++.+..
T Consensus 124 rLivqIdSL~R~~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp 203 (824)
T PF02399_consen 124 RLIVQIDSLHRLDGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRP 203 (824)
T ss_pred eEEEEehhhhhcccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCC
Confidence 1111111000 00 00 5668889999999988888888654
Q ss_pred c-ceEEEecccccccCccceeEE----------------------------------EEccccchhhhHHHHHHhhhcCC
Q psy9620 255 S-YIQINIGSLTLSANHNIQQVV----------------------------------EVCAEHEKENKLFGLLNDISSKD 299 (453)
Q Consensus 255 ~-~~~~~~~~~~~~~~~~i~~~~----------------------------------~~~~~~~k~~~l~~ll~~~~~~~ 299 (453)
+ .+.+.+.......-..-.-.+ ......+....+..++..+. .
T Consensus 204 ~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~--~ 281 (824)
T PF02399_consen 204 DENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLN--A 281 (824)
T ss_pred CCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHh--C
Confidence 3 233322221100000000000 00000112223333444442 3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc--EEEEcCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK--FVINFDY 377 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~--~VI~~d~ 377 (453)
++++.||+.|...++.++++.......+..+++..+.. .+.+ -++.+|++-|+++..|+++.+.. -|+-|=-
T Consensus 282 gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk 355 (824)
T PF02399_consen 282 GKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVK 355 (824)
T ss_pred CCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEEec
Confidence 56888999999999999999999889999998865554 2322 46789999999999999997543 2444422
Q ss_pred C----CChhHHHHhhhcccCCCCcceEEEEEcCC
Q psy9620 378 P----NNSEDYIHRIGRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 378 p----~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 407 (453)
| .++.+..|++||+=.. .....+++++..
T Consensus 356 ~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 356 PMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred CCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 3 3456789999997554 445667777654
No 154
>KOG1002|consensus
Probab=98.80 E-value=3.5e-07 Score=87.81 Aligned_cols=126 Identities=21% Similarity=0.257 Sum_probs=97.3
Q ss_pred chhhhHHHHHHhhhcCC-CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEE-EEecc
Q psy9620 283 EKENKLFGLLNDISSKD-ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG-RAGIL-VATDV 359 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~~~-~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vL-vaT~~ 359 (453)
.|...|.+-|..+.... ..+.|||..--...+.+...|.+.|+.++-+.|+|++..|..+++.|++. .+.|+ |+-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 34455555444443322 34899999999999999999999999999999999999999999999976 45554 55566
Q ss_pred CccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCC--CcceEEEEEcCCC
Q psy9620 360 AARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSD--NTGTSYTFFTQQN 408 (453)
Q Consensus 360 ~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~~ 408 (453)
-+.-+++-...+|+.+|+.++++.=.|..-|.-|.| ++-.++.|+-++.
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 667789999999999999999887777666666655 3556777776654
No 155
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.67 E-value=5.2e-08 Score=85.59 Aligned_cols=66 Identities=29% Similarity=0.355 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHhc-------CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMS-------GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~-------g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
+|+++|.+++..+.. .+.+++.+|||||||.+++..+..... ++||++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----------ceeEecCHHHHHHHHHHHHH
Confidence 589999999998873 588999999999999887754444332 59999999999999999997
Q ss_pred HhcC
Q psy9620 208 DFGS 211 (453)
Q Consensus 208 ~~~~ 211 (453)
.+..
T Consensus 72 ~~~~ 75 (184)
T PF04851_consen 72 DFGS 75 (184)
T ss_dssp HHST
T ss_pred Hhhh
Confidence 7753
No 156
>KOG0921|consensus
Probab=98.62 E-value=1.1e-07 Score=97.03 Aligned_cols=106 Identities=19% Similarity=0.393 Sum_probs=89.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY-------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFV 372 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V 372 (453)
.+-++||.+-+...-.|..+|... .+.+..+|+.....+..++.+....|..++|+.|.+++.-|.|.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 467999999999999999998753 4678889999999999999999999999999999999999999998888
Q ss_pred EEcCCC------------------CChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 373 INFDYP------------------NNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 373 I~~d~p------------------~s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
|..+.- .+.....||.||+||. .+|.|+.++..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 854421 2345669999999998 78888888764
No 157
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.59 E-value=2.3e-07 Score=87.37 Aligned_cols=74 Identities=20% Similarity=0.150 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHH----HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPI----AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|+|.|.+.+.. +.++.++++.||||+|||+++++|++.++...... ..+.+++|+++|..+.+|....++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKLM 85 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhcc
Confidence 579999995554 44788999999999999999999999876643221 023469999999999999888887763
No 158
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.59 E-value=2.3e-07 Score=87.37 Aligned_cols=74 Identities=20% Similarity=0.150 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHH----HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPI----AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|+|.|.+.+.. +.++.++++.||||+|||+++++|++.++...... ..+.+++|+++|..+.+|....++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKLM 85 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhcc
Confidence 579999995554 44788999999999999999999999876643221 023469999999999999888887763
No 159
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.53 E-value=2.6e-06 Score=89.97 Aligned_cols=129 Identities=22% Similarity=0.393 Sum_probs=89.4
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEeccC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFR----NGRAGILVATDVA 360 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~----~g~~~vLvaT~~~ 360 (453)
..+.+.+..+.. ..+.+|||++|....+.++..|... +.. +..++. ..+..+++.|+ .++..||++|..+
T Consensus 521 ~~~~~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 521 AEMAEFLPELLE-KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 345555555555 4557999999999999999998753 333 344554 25677887776 4678899999999
Q ss_pred ccCCCCCC--CcEEEEcCCCC----C--------------------------hhHHHHhhhcccCCCCcceEEEEEcCC-
Q psy9620 361 ARGLDVDD--VKFVINFDYPN----N--------------------------SEDYIHRIGRTGRSDNTGTSYTFFTQQ- 407 (453)
Q Consensus 361 ~~GiDip~--v~~VI~~d~p~----s--------------------------~~~y~qr~GRagR~g~~g~~~~~~~~~- 407 (453)
.+|||+|+ +++||...+|. + +..+.|-+||.-|...+--+++++++.
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~ 675 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRL 675 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccc
Confidence 99999986 67888877653 1 112368899999986554455555654
Q ss_pred -ChHHHHHHHHHH
Q psy9620 408 -NSRQAKDLIDVL 419 (453)
Q Consensus 408 -~~~~~~~l~~~l 419 (453)
...+-+.+++.|
T Consensus 676 ~~~~Yg~~~l~sL 688 (697)
T PRK11747 676 LTKRYGKRLLDAL 688 (697)
T ss_pred cchhHHHHHHHhC
Confidence 344556665554
No 160
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.51 E-value=6e-07 Score=74.64 Aligned_cols=70 Identities=40% Similarity=0.534 Sum_probs=54.3
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCC
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKG 227 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 227 (453)
+++++.++||+|||.+++..+...... ...+++||++|++.|+.|+.+.+...... .+.+..+.+.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 70 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIK 70 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchh
Confidence 468999999999999988877766543 13457999999999999999988888654 56666666654443
No 161
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.44 E-value=4.6e-07 Score=78.24 Aligned_cols=108 Identities=20% Similarity=0.313 Sum_probs=73.8
Q ss_pred CCCCcEEEEEcchhHHHHHHHHHHhcCC--eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec--cCccCCCCCC--CcE
Q psy9620 298 KDENKTIIFAETKRKVDKITKSIQNYGW--AAVGIHGDKSQQERDYVLKEFRNGRAGILVATD--VAARGLDVDD--VKF 371 (453)
Q Consensus 298 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~GiDip~--v~~ 371 (453)
..++.+|||++|....+.+.+.+..... ....+.. ...++..+++.|+.++..||+|+. .+.+|||+++ ++.
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 3468999999999999999999876531 1122222 355888999999999999999999 9999999996 667
Q ss_pred EEEcCCCCC-h-----------------------------hHHHHhhhcccCCCCcceEEEEEcCC
Q psy9620 372 VINFDYPNN-S-----------------------------EDYIHRIGRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 372 VI~~d~p~s-~-----------------------------~~y~qr~GRagR~g~~g~~~~~~~~~ 407 (453)
||...+|.. + ....|-+||+-|..++--+++++++.
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 998887731 1 11268899999997665555565553
No 162
>KOG4439|consensus
Probab=98.35 E-value=2.9e-05 Score=78.06 Aligned_cols=121 Identities=19% Similarity=0.263 Sum_probs=96.2
Q ss_pred ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc--CCCcEE-EEe
Q psy9620 281 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN--GRAGIL-VAT 357 (453)
Q Consensus 281 ~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vL-vaT 357 (453)
...|...+++.++.+......+++|...-.....-+...|...++....+||.....+|..+++.|.. |..+|+ +.-
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 44566777777777755555677776666666677778899999999999999999999999999973 445555 444
Q ss_pred ccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEE
Q psy9620 358 DVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSY 401 (453)
Q Consensus 358 ~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~ 401 (453)
.+-+.||++-..+|+|..|+-+++.-=.|.+-|.=|.|++-.++
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceE
Confidence 66678999999999999999999998889899988988664433
No 163
>KOG0386|consensus
Probab=98.18 E-value=1.8e-05 Score=82.36 Aligned_cols=122 Identities=19% Similarity=0.247 Sum_probs=101.1
Q ss_pred hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC---CcEEEEeccC
Q psy9620 284 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR---AGILVATDVA 360 (453)
Q Consensus 284 k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vLvaT~~~ 360 (453)
|...|..+|-.+. ..++++|.||.-..-.+.+..+|.-.++.-..+.|.....+|...++.|..-. ..+|.+|.+.
T Consensus 711 KfELLDRiLPKLk-atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstrag 789 (1157)
T KOG0386|consen 711 KFELLDRILPKLK-ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAG 789 (1157)
T ss_pred HHHHHHhhhHHHH-hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeeccc
Confidence 3333333444432 34789999999999999999999999999999999999999999999998644 4588999999
Q ss_pred ccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 361 ARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 361 ~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
..|+|+.-.+.||.||.-+++..+.|+--||-|.|+.-.+-++...
T Consensus 790 glglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 790 GLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred ccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 9999999999999999999999999999999998876555555443
No 164
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.13 E-value=8.1e-06 Score=86.33 Aligned_cols=65 Identities=31% Similarity=0.365 Sum_probs=53.2
Q ss_pred CCCCCCHHHHHHHHHHh---cC------CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 132 GFDRPTPIQAQGWPIAM---SG------SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~---~g------~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
|| ++++-|.+.+..+. ++ +.+++.|+||+|||++|++|++..... .+.++||-+.|+.|-+|+
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~-------~~k~vVIST~T~~LQeQL 94 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA-------EKKKLVISTATVALQEQL 94 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH-------cCCeEEEEcCCHHHHHHH
Confidence 56 89999999776654 33 668899999999999999999876554 345699999999999998
Q ss_pred HH
Q psy9620 203 QE 204 (453)
Q Consensus 203 ~~ 204 (453)
..
T Consensus 95 ~~ 96 (697)
T PRK11747 95 VS 96 (697)
T ss_pred Hh
Confidence 53
No 165
>KOG0952|consensus
Probab=98.10 E-value=1.1e-06 Score=91.74 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=71.2
Q ss_pred CCCCCHHHHHHHHHHh-cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 133 FDRPTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
+..+.|+|.+.+..+. ...++++.+|||+|||++|.+.+...+... .+.++++++|.++|+..-.+.+.+...
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~------p~~kvvyIap~kalvker~~Dw~~r~~ 998 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY------PGSKVVYIAPDKALVKERSDDWSKRDE 998 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC------CCccEEEEcCCchhhcccccchhhhcc
Confidence 4467889998887665 467889999999999999999988776654 356799999999999988777776655
Q ss_pred CCCceEEEEeCCccCC
Q psy9620 212 STYLRSTCVYGGASKG 227 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~ 227 (453)
..++++..+.|....+
T Consensus 999 ~~g~k~ie~tgd~~pd 1014 (1230)
T KOG0952|consen 999 LPGIKVIELTGDVTPD 1014 (1230)
T ss_pred cCCceeEeccCccCCC
Confidence 5588888887776655
No 166
>KOG0391|consensus
Probab=98.05 E-value=4.5e-05 Score=80.52 Aligned_cols=143 Identities=22% Similarity=0.394 Sum_probs=110.1
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC--CcEEEEecc
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR--AGILVATDV 359 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vLvaT~~ 359 (453)
.-|...|.-+|..+.. .+.++|||..-.+..+.|..+|.-+|+.-..+.|...-++|...+++|...+ ...|++|..
T Consensus 1259 cGKLQtLAiLLqQLk~-eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKS-EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred cchHHHHHHHHHHHHh-cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 4577778888887755 4679999999999999999999999999999999999999999999999765 357789999
Q ss_pred CccCCCCCCCcEEEEcCCCCChh------HHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHH
Q psy9620 360 AARGLDVDDVKFVINFDYPNNSE------DYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSAL 433 (453)
Q Consensus 360 ~~~GiDip~v~~VI~~d~p~s~~------~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~ 433 (453)
-..|||+-..+.||+||..+|+. +..||||++ ++-+.|-|+++...+ -++|++++++ ..|.++
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRLISe~TIE-----eniLkkanqK--r~L~ev 1406 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRLISERTIE-----ENILKKANQK--RMLDEV 1406 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEeeccchHH-----HHHHhhhhHH--HHHHHH
Confidence 99999999999999999988764 455666554 345677777765321 1344445442 344555
Q ss_pred Hhh
Q psy9620 434 ASR 436 (453)
Q Consensus 434 ~~~ 436 (453)
+-+
T Consensus 1407 aiq 1409 (1958)
T KOG0391|consen 1407 AIQ 1409 (1958)
T ss_pred hhc
Confidence 544
No 167
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.98 E-value=9.4e-05 Score=81.30 Aligned_cols=125 Identities=21% Similarity=0.313 Sum_probs=103.7
Q ss_pred chhhhHHHHH-HhhhcCCCC--cEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC--CCcEEEEe
Q psy9620 283 EKENKLFGLL-NDISSKDEN--KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG--RAGILVAT 357 (453)
Q Consensus 283 ~k~~~l~~ll-~~~~~~~~~--~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vLvaT 357 (453)
.|...+.+++ ..+.. ... ++|||++.....+.+...|...++....++|.++..+|..++++|.++ ..-++++|
T Consensus 692 ~k~~~l~~ll~~~~~~-~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ 770 (866)
T COG0553 692 GKLQALDELLLDKLLE-EGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSL 770 (866)
T ss_pred hHHHHHHHHHHHHHHh-hcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEe
Confidence 3455566666 44433 344 899999999999999999999998899999999999999999999986 45567777
Q ss_pred ccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcce--EEEEEcCCC
Q psy9620 358 DVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGT--SYTFFTQQN 408 (453)
Q Consensus 358 ~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~~ 408 (453)
.+...|+++-..++||+||..+++....|...|+-|.|++.. ++-+++.+.
T Consensus 771 kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 771 KAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred cccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 899999999999999999999999999999999999876644 455555543
No 168
>KOG0388|consensus
Probab=97.92 E-value=6.5e-05 Score=75.58 Aligned_cols=127 Identities=18% Similarity=0.317 Sum_probs=109.2
Q ss_pred ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEecc
Q psy9620 281 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRA-GILVATDV 359 (453)
Q Consensus 281 ~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~-~vLvaT~~ 359 (453)
+..|...|.++|..+.. .+.++|+|+.--+..+.+.++|.-.++.-..+.|.....+|..+..+|...++ -+|++|.+
T Consensus 1026 dSgKL~~LDeLL~kLka-egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKA-EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRA 1104 (1185)
T ss_pred cccceeeHHHHHHHhhc-CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEeccc
Confidence 45677778888877754 47799999999999999999999999999999999999999999999997554 46789999
Q ss_pred CccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc--ceEEEEEcCCC
Q psy9620 360 AARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT--GTSYTFFTQQN 408 (453)
Q Consensus 360 ~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~~ 408 (453)
-+-||++.+.+.||+||..+++.-=.|..-||-|.|+. -.+|-+++...
T Consensus 1105 GGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1105 GGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred CcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 99999999999999999999999889999999998865 34666666554
No 169
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.82 E-value=4.3e-05 Score=62.66 Aligned_cols=53 Identities=30% Similarity=0.335 Sum_probs=36.4
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
|+-.++...+|+|||--.+--++..... .+.++|||.|||.++..+.+.++..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~~ 56 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKGL 56 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTTS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhcC
Confidence 4456788999999997654444433332 3567999999999999999888754
No 170
>PF13245 AAA_19: Part of AAA domain
Probab=97.80 E-value=9e-05 Score=54.51 Aligned_cols=60 Identities=32% Similarity=0.387 Sum_probs=39.5
Q ss_pred HHHHHhcCCc-EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy9620 143 GWPIAMSGSN-MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVA 206 (453)
Q Consensus 143 ~i~~i~~g~d-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~ 206 (453)
++...+++.. +++.+|.|||||.+.+-.+...+..... .+.++||++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~----~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARAD----PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CCCeEEEECCCHHHHHHHHHHH
Confidence 4443334444 5569999999996654444333321111 1556999999999999998887
No 171
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.78 E-value=0.00012 Score=77.88 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=35.4
Q ss_pred cccchhhhHHHHHHhhhcC--------CCCcEEEEEcchhHHHHHHHHHHh
Q psy9620 280 AEHEKENKLFGLLNDISSK--------DENKTIIFAETKRKVDKITKSIQN 322 (453)
Q Consensus 280 ~~~~k~~~l~~ll~~~~~~--------~~~~~lVF~~s~~~~~~l~~~L~~ 322 (453)
.+..|...|.++|+++... ..+++||||+...+|..|.++|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 4678899999999877543 346899999999999999999865
No 172
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.77 E-value=0.0013 Score=72.01 Aligned_cols=81 Identities=19% Similarity=0.331 Sum_probs=55.9
Q ss_pred HHHHHH--HhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC--C-Cc-ceEEEEEcCCChHHHH
Q psy9620 340 DYVLKE--FRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS--D-NT-GTSYTFFTQQNSRQAK 413 (453)
Q Consensus 340 ~~~~~~--f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~--g-~~-g~~~~~~~~~~~~~~~ 413 (453)
.....+ .+....++||.++++-.|.|.|.++ .+-.|-|.--...+|.+-|+.|. + ++ |..+-|.. ....++
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g--l~e~l~ 657 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG--LKEALK 657 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc--hHHHHH
Confidence 334444 3456899999999999999999776 55678887788899999999998 3 23 33333333 455555
Q ss_pred HHHHHHHhcC
Q psy9620 414 DLIDVLTESN 423 (453)
Q Consensus 414 ~l~~~l~~~~ 423 (453)
+.++.+....
T Consensus 658 ~Al~~Y~~~~ 667 (962)
T COG0610 658 KALKLYSNEG 667 (962)
T ss_pred HHHHHhhccc
Confidence 5555544444
No 173
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.55 E-value=0.00021 Score=65.14 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHhcCCc-EEEEecCCCcchhhhhHHHHHHhhhc-CCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSGSN-MVGVAQTGSGKTLAYMLPAIVHINHQ-SQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~l~~l~~~~~~-~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
++++-|.+|+..+++... .+|.+|.|+|||.+.. .++..+... .......+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999888 8999999999995433 333333110 000112566799999999999999888877
No 174
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.43 E-value=0.00077 Score=62.17 Aligned_cols=84 Identities=30% Similarity=0.304 Sum_probs=66.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|+ .|+++|.-++-.+..|+ |+...||-|||++..+|++..... |..|-|++.+..||..-++++..+.
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 355 89999999998787777 999999999999988888766553 5569999999999999999999999
Q ss_pred CCCCceEEEEeCCcc
Q psy9620 211 SSTYLRSTCVYGGAS 225 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~ 225 (453)
..+++.+.++..+.+
T Consensus 143 ~~LGlsv~~~~~~~~ 157 (266)
T PF07517_consen 143 EFLGLSVGIITSDMS 157 (266)
T ss_dssp HHTT--EEEEETTTE
T ss_pred HHhhhccccCccccC
Confidence 999999999988765
No 175
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.41 E-value=0.0016 Score=54.28 Aligned_cols=77 Identities=19% Similarity=0.206 Sum_probs=53.6
Q ss_pred EcCCCCHHHHHHHHHHHhcCC-CcEEEEeccCccCCCCCCC--cEEEEcCCCCC--------------------------
Q psy9620 330 IHGDKSQQERDYVLKEFRNGR-AGILVATDVAARGLDVDDV--KFVINFDYPNN-------------------------- 380 (453)
Q Consensus 330 ~h~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~GiDip~v--~~VI~~d~p~s-------------------------- 380 (453)
+....+..+...+++.|+... ..||++|..+++|||+|+- +.||...+|..
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 344455556788899998654 3799999889999999974 57887776631
Q ss_pred -----hhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 381 -----SEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 381 -----~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
.....|-+||+-|...+--+++++++
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 12236888999998655445555543
No 176
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.38 E-value=0.0012 Score=55.10 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCC---cEEEEecc--CccCCCCCC--CcEEEEcCCCCC-----------------------------
Q psy9620 337 QERDYVLKEFRNGRA---GILVATDV--AARGLDVDD--VKFVINFDYPNN----------------------------- 380 (453)
Q Consensus 337 ~~r~~~~~~f~~g~~---~vLvaT~~--~~~GiDip~--v~~VI~~d~p~s----------------------------- 380 (453)
.+...+++.|++... .||+++.- +++|||+|+ ++.||...+|..
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 355778888887543 69999987 999999997 467888777631
Q ss_pred --hhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 381 --SEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 381 --~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
+....|-+||+-|...+--+++++++
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEec
Confidence 11226888999998666445555554
No 177
>KOG1802|consensus
Probab=97.34 E-value=0.0006 Score=68.52 Aligned_cols=85 Identities=19% Similarity=0.220 Sum_probs=66.5
Q ss_pred HHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy9620 127 EVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVA 206 (453)
Q Consensus 127 ~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~ 206 (453)
.+...++.+++.-|..|+.++++..-.||++|.|+|||.+-.-- +.++... ....+||++|+..-+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~I-Vyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATI-VYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHH-HHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 34445788999999999999999999999999999999875443 3344332 2445999999999999999998
Q ss_pred HHhcCCCCceEEEEeC
Q psy9620 207 RDFGSSTYLRSTCVYG 222 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~g 222 (453)
.+.+ ++++-+..
T Consensus 475 h~tg----LKVvRl~a 486 (935)
T KOG1802|consen 475 HKTG----LKVVRLCA 486 (935)
T ss_pred HhcC----ceEeeeeh
Confidence 8854 67666544
No 178
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.26 E-value=0.00073 Score=64.65 Aligned_cols=69 Identities=23% Similarity=0.171 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 136 PTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+++-|.+++.. ...+++|.|..|||||.+.+--++..+.... . +..++|+|++|+..|..+.+.+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~---~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-V---PPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-S---TGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-C---ChHHheecccCHHHHHHHHHHHHHhc
Confidence 47889999877 6789999999999999876554444443332 1 23459999999999999998888753
No 179
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.15 E-value=0.0032 Score=59.70 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=51.7
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCc-----
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGA----- 224 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~----- 224 (453)
.+.+|++-.+|+|||+..+..+. .+...... .....+|||||. .+..|+..++.++.....+++....+..
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~ 100 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALIS-YLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRL 100 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHH-HHHHCCTT--SS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHT
T ss_pred CCCEEEEECCCCCchhhhhhhhh-hhhhcccc--ccccceeEeecc-chhhhhhhhhccccccccccccccccccccccc
Confidence 35789999999999987654443 33332211 011249999999 8889999999999866566777666655
Q ss_pred cCCCCCCceEEEEecc
Q psy9620 225 SKGPQPDRQVLMWSAT 240 (453)
Q Consensus 225 ~~~~~~~~q~v~~SAT 240 (453)
.........++++|-.
T Consensus 101 ~~~~~~~~~vvi~ty~ 116 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYE 116 (299)
T ss_dssp TSSSCCCSSEEEEEHH
T ss_pred cccccccceeeecccc
Confidence 2233355667776644
No 180
>KOG1015|consensus
Probab=97.15 E-value=0.0021 Score=67.17 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=95.9
Q ss_pred chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc----------------------CCeEEEEcCCCCHHHHH
Q psy9620 283 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY----------------------GWAAVGIHGDKSQQERD 340 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----------------------~~~~~~~h~~~~~~~r~ 340 (453)
.|.-.|+++|..+. .-..+.|||-.+....+.+..+|... |..-..|.|..+..+|.
T Consensus 1126 gKmiLLleIL~mce-eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCE-EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred cceehHHHHHHHHH-HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 34445666665542 34679999999999999998888641 33456788999999999
Q ss_pred HHHHHHhcC---C-CcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEE
Q psy9620 341 YVLKEFRNG---R-AGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTF 403 (453)
Q Consensus 341 ~~~~~f~~g---~-~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~ 403 (453)
.+.+.|.+- + .-.||+|.+-+-||++-+.+.||.||..+++.-=+|-+=|+=|.|+.--||++
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 999999853 2 33889999999999999999999999999998889988899998876555544
No 181
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=97.08 E-value=0.028 Score=56.62 Aligned_cols=92 Identities=21% Similarity=0.197 Sum_probs=57.1
Q ss_pred cCCCHH-HHHHHHHCCCCCCCH----HHHHHHHHHh--cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 118 ANFPDY-VLKEVKRQGFDRPTP----IQAQGWPIAM--SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 118 ~~l~~~-l~~~l~~~g~~~~~~----~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
....++ |...|++.--.+++. +|.+-=.+|. .++-+++++..|||||.+++--+...+......- .+.-+|
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l--~~k~vl 264 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL--QAKPVL 264 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc--ccCceE
Confidence 344444 455677664444433 3544444455 4566889999999999886533322233222111 222399
Q ss_pred EEcCCHHHHHHHHHHHHHhcC
Q psy9620 191 VLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~ 211 (453)
|+.|.+-+..-+...+-+++.
T Consensus 265 vl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EEcCcHHHHHHHHHhchhhcc
Confidence 999999999998888887764
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.04 E-value=0.0021 Score=57.06 Aligned_cols=63 Identities=22% Similarity=0.244 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHhcCC--cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSGS--NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
++++-|.+++..++... -++++++.|+|||.+ +..+...+.. .+.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHh
Confidence 47889999999997543 467889999999964 2334444433 356799999999988886665
No 183
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.97 E-value=0.0024 Score=66.99 Aligned_cols=68 Identities=21% Similarity=0.163 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHhcC-CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 134 DRPTPIQAQGWPIAMSG-SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..+++.|.+|+..++.. ..++|.+|+|+|||.+..-.+. .+.. .+.++|+++||..-+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~-~~~~-------~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIR-QLVK-------RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHH-HHHH-------cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 46899999999998876 5678999999999966433333 3322 2457999999999999998888764
No 184
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.74 E-value=0.0027 Score=56.13 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
...+..|..++.++++..-+++.+|.|||||+.++..+++.+... .--+++|+-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCC
Confidence 356889999999999888888999999999999988888877652 23457888888654
No 185
>KOG1803|consensus
Probab=96.70 E-value=0.0044 Score=62.08 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHhcCCc-EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSGSN-MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
.+.+-|.+|+....+.++ .++.+|+|+|||.+...-+.+.+.+ +.++||++||.+-+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--------CCeEEEEcCchHHHHHHHHHhc
Confidence 678899999999888765 5678999999998866655555443 4569999999999988888644
No 186
>PTZ00146 fibrillarin; Provisional
Probab=96.58 E-value=0.0051 Score=57.29 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHhcC--------CcEEEEecCCCcchhhhhH
Q psy9620 133 FDRPTPIQAQGWPIAMSG--------SNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g--------~d~li~a~TGsGKT~~~~l 169 (453)
|..-+|++++.-.+|+.+ .+.++-.-+|+|=+...+.
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lA 151 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVS 151 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHH
Confidence 445556666655555433 2456777777776655433
No 187
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.55 E-value=0.0065 Score=65.30 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=58.1
Q ss_pred CCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC--CCcc--------eEEEEEcCCChHHHHHHHHHH
Q psy9620 350 RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS--DNTG--------TSYTFFTQQNSRQAKDLIDVL 419 (453)
Q Consensus 350 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~--g~~g--------~~~~~~~~~~~~~~~~l~~~l 419 (453)
..+.|++-+++.+|.|.|+|-.++.+.-..|...-.|.+||.-|. ++.| .-.++.+.....++..|..-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 688999999999999999999999999888888999999999886 2222 223445556677888888777
Q ss_pred Hhc
Q psy9620 420 TES 422 (453)
Q Consensus 420 ~~~ 422 (453)
++.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 654
No 188
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.33 E-value=0.03 Score=58.87 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=78.4
Q ss_pred ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-C-CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 281 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-G-WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 281 ~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
...|.+..+.++...... ++.+||.++....+..+...|+.. + ..+..+|+.++..+|.+...+..+|+.+|+|.|-
T Consensus 170 GSGKTevyl~~i~~~l~~-Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 170 GEDWARRLAAAAAATLRA-GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CCcHHHHHHHHHHHHHHc-CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 346778888888776553 568999999999999999999865 3 5789999999999999999999999999999998
Q ss_pred cCccCCCCCCCcEEEEcC
Q psy9620 359 VAARGLDVDDVKFVINFD 376 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d 376 (453)
.+.- .-+++..+||..+
T Consensus 249 SAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 249 SAVF-APVEDLGLVAIWD 265 (665)
T ss_pred eeEE-eccCCCCEEEEEc
Confidence 7654 5677888877543
No 189
>PTZ00146 fibrillarin; Provisional
Probab=96.31 E-value=0.0096 Score=55.47 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=5.3
Q ss_pred EcCCCCHHHH
Q psy9620 330 IHGDKSQQER 339 (453)
Q Consensus 330 ~h~~~~~~~r 339 (453)
++...+++++
T Consensus 242 id~g~~pe~~ 251 (293)
T PTZ00146 242 IDSTAKPEVV 251 (293)
T ss_pred cccCCCHHHH
Confidence 3455555554
No 190
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.28 E-value=0.024 Score=52.46 Aligned_cols=67 Identities=21% Similarity=0.481 Sum_probs=53.7
Q ss_pred HHHHHHhcCCCcEEEEeccCccCCCCCC--------CcEEEEcCCCCChhHHHHhhhcccCCCCc-ceEEEEEcCC
Q psy9620 341 YVLKEFRNGRAGILVATDVAARGLDVDD--------VKFVINFDYPNNSEDYIHRIGRTGRSDNT-GTSYTFFTQQ 407 (453)
Q Consensus 341 ~~~~~f~~g~~~vLvaT~~~~~GiDip~--------v~~VI~~d~p~s~~~y~qr~GRagR~g~~-g~~~~~~~~~ 407 (453)
...+.|.+|+.+|+|.+++.+.||-+.+ -++-|...+|++.+..+|..||+-|.++. .-.|.++..+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 5577899999999999999999998753 22566788999999999999999999864 3345555443
No 191
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.28 E-value=0.032 Score=49.99 Aligned_cols=86 Identities=24% Similarity=0.417 Sum_probs=65.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc---CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMS---GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~---g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
.|.....|++|+=.+.. ++ -+++.|.++...+.+ ++|.+.++-.|.|||.+ ++|++..+..+. ...|.
T Consensus 4 ~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEEE
Confidence 56677778888766643 34 799999999988874 68999999999999976 688888777642 33566
Q ss_pred EEcCCHHHHHHHHHHHHHh
Q psy9620 191 VLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~ 209 (453)
+++| ++|..|....++..
T Consensus 75 viVp-k~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 75 VIVP-KALLEQMRQMLRSR 92 (229)
T ss_pred EEcC-HHHHHHHHHHHHHH
Confidence 6677 57889988887764
No 192
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.27 E-value=0.029 Score=59.59 Aligned_cols=92 Identities=12% Similarity=0.191 Sum_probs=72.3
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
.-|....+.++..... .+.++||.++++..+.++++.|++. +..+..+|++++..+|.....+...|+.+|+|+|..+
T Consensus 173 SGKT~v~l~~i~~~l~-~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 173 SGKTEVYLQAIAEVLA-QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred ChHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 3455555444444333 2568999999999999999999864 7789999999999999999999999999999999754
Q ss_pred ccCCCCCCCcEEEEc
Q psy9620 361 ARGLDVDDVKFVINF 375 (453)
Q Consensus 361 ~~GiDip~v~~VI~~ 375 (453)
.. +.+.++.+||.-
T Consensus 252 l~-~p~~~l~liVvD 265 (679)
T PRK05580 252 LF-LPFKNLGLIIVD 265 (679)
T ss_pred hc-ccccCCCEEEEE
Confidence 33 567788877753
No 193
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.22 E-value=0.029 Score=57.35 Aligned_cols=90 Identities=12% Similarity=0.201 Sum_probs=70.9
Q ss_pred chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc
Q psy9620 283 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA 361 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 361 (453)
-|....+.++..... ...++||.+|++.-+.++++.|++. +..+..+|+.++..+|..+..+..+|+.+|+|+|..+.
T Consensus 9 GKT~v~l~~i~~~l~-~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 9 GKTEVYLQAIEKVLA-LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 344444555544433 3568999999999999999999864 67789999999999999999999999999999997544
Q ss_pred cCCCCCCCcEEEE
Q psy9620 362 RGLDVDDVKFVIN 374 (453)
Q Consensus 362 ~GiDip~v~~VI~ 374 (453)
. +.++++.+||.
T Consensus 88 f-~p~~~l~lIIV 99 (505)
T TIGR00595 88 F-LPFKNLGLIIV 99 (505)
T ss_pred c-CcccCCCEEEE
Confidence 3 45777887774
No 194
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.07 E-value=0.033 Score=59.28 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=64.7
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-CccCCCCCCCcEEEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-AARGLDVDDVKFVIN 374 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~GiDip~v~~VI~ 374 (453)
..+++|.+||+.-|.+.++.+... ++.+..+||+++..+|..+++.+.+|+.+|+|+|.. +...+.+.++.+||.
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 568999999999999888887653 688999999999999999999999999999999974 445677888888773
No 195
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.98 E-value=0.033 Score=58.87 Aligned_cols=79 Identities=23% Similarity=0.224 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCC
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSST 213 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~ 213 (453)
..+++-|++|+-.- ..+++|.|..|||||.+.+--+. ++...... ....+|+|+.|+..|..+.+.+.......
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~a-yLl~~~~~---~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAG-WLLARGQA---QPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHH-HHHHhCCC---CHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 36999999988543 35689999999999977544332 23222111 23369999999999999999887764333
Q ss_pred CceEE
Q psy9620 214 YLRST 218 (453)
Q Consensus 214 ~~~~~ 218 (453)
.+.+.
T Consensus 269 ~v~v~ 273 (684)
T PRK11054 269 DITAR 273 (684)
T ss_pred CcEEE
Confidence 34333
No 196
>PRK10536 hypothetical protein; Provisional
Probab=95.92 E-value=0.021 Score=52.22 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
++...+..|...+..+.+...+++.+++|||||+..+..++..+... .-.+++|.-|+.+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ 116 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQA 116 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCc
Confidence 45567889999999998888888999999999988776666555331 12246666677543
No 197
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.87 E-value=0.014 Score=53.87 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=38.5
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQ 178 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~ 178 (453)
+|..+.+|+++++|+.+.+.+. . ..-=+|+.+|||||||.+ +..++.+++..
T Consensus 101 Ip~~i~~~e~LglP~i~~~~~~-~-----------------~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 101 IPSKIPTLEELGLPPIVRELAE-S-----------------PRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred cCccCCCHHHcCCCHHHHHHHh-C-----------------CCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 6888889999999987776332 1 122368899999999965 56778887764
No 198
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.78 E-value=0.028 Score=53.62 Aligned_cols=65 Identities=28% Similarity=0.192 Sum_probs=41.4
Q ss_pred HHHHHCCCCCCCHHHHHHHHHH-hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 126 KEVKRQGFDRPTPIQAQGWPIA-MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 126 ~~l~~~g~~~~~~~Q~~~i~~i-~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
+.+.+.|. +++.|.+.+..+ ..+.++|++++||||||.. +-.++..+...+ ..-+++++=.+.||
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCccc
Confidence 33444444 677788777654 4678999999999999954 344444443211 12357777677776
No 199
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.63 E-value=0.03 Score=53.54 Aligned_cols=66 Identities=24% Similarity=0.277 Sum_probs=42.3
Q ss_pred HHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 125 LKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 125 ~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
++.+.+.|+ +++.|.+.+.. +..+++++++++||||||. ++-.++..+.... ...+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~-----~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD-----PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC-----CCceEEEEcCCCcc
Confidence 344544454 66778888765 4578899999999999994 4444444432111 23357777777665
No 200
>KOG1596|consensus
Probab=95.61 E-value=0.039 Score=49.05 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCcE--------EEEecCCCcchh
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNM--------VGVAQTGSGKTL 165 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~--------li~a~TGsGKT~ 165 (453)
.|.--+|+|++....|+.|-|- ++....+||-|.
T Consensus 130 EyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttV 171 (317)
T KOG1596|consen 130 EYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTV 171 (317)
T ss_pred EEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCcee
Confidence 3556788888888888766432 333444566663
No 201
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.56 E-value=0.03 Score=59.39 Aligned_cols=70 Identities=20% Similarity=0.118 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.+++-|.+|+... ...++|.|..|||||.+...-+...+... .. +..++|+|+.|+..|..+.+.+.++.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~-~v---~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGC-GY---QARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhc-CC---CHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4789999998653 56789999999999987544443333221 11 22359999999999999999888764
No 202
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.44 E-value=0.065 Score=56.54 Aligned_cols=74 Identities=18% Similarity=0.296 Sum_probs=63.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc-cCCCCCCCcEEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA-RGLDVDDVKFVI 373 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~-~GiDip~v~~VI 373 (453)
..+++|.+||+.-|.++++.+.+. ++.+..+||+++..+|..+++.+.+|+.+|+|+|..+- ..+++.++.+||
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 568999999999999888877653 68999999999999999999999999999999997543 457777888777
No 203
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.38 E-value=0.069 Score=56.25 Aligned_cols=96 Identities=15% Similarity=0.234 Sum_probs=79.9
Q ss_pred EEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q psy9620 276 VEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFRNGRAGIL 354 (453)
Q Consensus 276 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vL 354 (453)
+.-++-..|.+..++++...... ++.+||.++.+.....+.+.|+.. +.++..+|+++++.+|..+..+.++|+.+|+
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~-GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQ-GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVV 300 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHc-CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEE
Confidence 34455667888888888887653 679999999999999998888764 8899999999999999999999999999999
Q ss_pred EEeccCccCCCCCCCcEEE
Q psy9620 355 VATDVAARGLDVDDVKFVI 373 (453)
Q Consensus 355 vaT~~~~~GiDip~v~~VI 373 (453)
|.|-.+-- .-+++..+||
T Consensus 301 IGtRSAlF-~Pf~~LGLII 318 (730)
T COG1198 301 IGTRSALF-LPFKNLGLII 318 (730)
T ss_pred EEechhhc-CchhhccEEE
Confidence 99976543 4566777766
No 204
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.11 E-value=0.11 Score=55.55 Aligned_cols=65 Identities=17% Similarity=0.310 Sum_probs=55.2
Q ss_pred cCCCCcEEEEEcchhHHHHHHHHHHhcC-----CeEEE-EcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc
Q psy9620 297 SKDENKTIIFAETKRKVDKITKSIQNYG-----WAAVG-IHGDKSQQERDYVLKEFRNGRAGILVATDVAA 361 (453)
Q Consensus 297 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~-----~~~~~-~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 361 (453)
...+.++++.+||..-+.++++.|.... +.+.. +|+.|+..+++.++++|.+|..+|||+|+.+-
T Consensus 122 a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 122 AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 3456899999999999999999887642 44444 89999999999999999999999999998643
No 205
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.06 E-value=0.071 Score=50.56 Aligned_cols=66 Identities=27% Similarity=0.323 Sum_probs=40.7
Q ss_pred HHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 125 LKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 125 ~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
++.+.+.|. +++.|.+.+.. +..+++++++++||||||.. +-.++..+.... ..-+++++-.+.||
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhh
Confidence 344444443 55666666655 44678999999999999954 333444432211 13357777777776
No 206
>KOG0701|consensus
Probab=95.05 E-value=0.017 Score=65.01 Aligned_cols=93 Identities=23% Similarity=0.408 Sum_probs=77.4
Q ss_pred cEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCC-----------HHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 302 KTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKS-----------QQERDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 302 ~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~-----------~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
..|+||+.+..+..+.+.++.. .+.+..+.|.+. ...+.+++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 4689999999999999988865 233333444322 2346789999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCC
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRS 394 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~ 394 (453)
+.|+.++.|.....|+|..||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999998665
No 207
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.05 E-value=0.05 Score=58.38 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..+++-|.+++... ..+++|.|..|||||.+..--+ .++...... +...+|+|+-|+..|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ri-a~Li~~~~v---~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRI-AWLLSVENA---SPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHH-HHHHHcCCC---CHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 46899999998653 4689999999999997754333 333332111 23359999999999999999988874
No 208
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.05 E-value=0.12 Score=56.67 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=64.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cCccCCCCCCCcEEEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-VAARGLDVDDVKFVIN 374 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~GiDip~v~~VI~ 374 (453)
..+++|.+||+.-|.+.++.|... ++.+..+++..+..++..+++.++.|+.+|||+|. .+...+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 468999999999999999887753 56788899999999999999999999999999997 4445678888888773
No 209
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.00 E-value=0.1 Score=55.81 Aligned_cols=67 Identities=21% Similarity=0.098 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
.++ .+++.|++|+..+...+-+++.++.|+|||.+. -.++..+.... ....+++++||-.-|..+.+
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-----~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG-----GLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-----CCceEEEEeCchHHHHHHHH
Confidence 454 799999999999998889999999999999653 23333333211 11458889999887776654
No 210
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.96 E-value=0.13 Score=55.18 Aligned_cols=62 Identities=21% Similarity=0.131 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHhcC-CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSG-SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
.+++-|.+|+..++.+ +-++++++.|+|||... -.++..+.. .+..+++++||---+..+.+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~-------~g~~V~~~ApTg~Aa~~L~~ 414 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA-------AGYRVIGAALSGKAAEGLQA 414 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh-------CCCeEEEEeCcHHHHHHHHh
Confidence 6899999999998874 56789999999999552 223333322 35679999999887776653
No 211
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.91 E-value=0.091 Score=56.01 Aligned_cols=69 Identities=17% Similarity=0.110 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 136 PTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+++-|.+++.. ...+++|.|..|||||.+.+--+...+.... . ....+|+|+.|+..|.++.+.+.++.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-~---~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-Y---KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-C---CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 78899998864 3568999999999999775444443332211 1 23459999999999999999888754
No 212
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.89 E-value=0.13 Score=56.38 Aligned_cols=64 Identities=22% Similarity=0.147 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHHHHHHhcCCc-EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSN-MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
.|+ .+++-|.+|+..++.+++ +++++..|+|||.+ +-.+...+.. .+..++.++||---+..+.
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-------~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-------AGYEVRGAALSGIAAENLE 407 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEecCcHHHHHHHh
Confidence 344 799999999999998665 67889999999965 3333333322 3667999999988776653
No 213
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.86 E-value=0.064 Score=57.61 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..+++-|.+++... ...++|.|..|||||.+..-=+. ++...... ....+|+|+-|+..|..+.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria-~Li~~~~v---~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIA-WLMQVENA---SPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHH-HHHHcCCC---ChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 36899999998643 46899999999999977543333 33322111 22359999999999999999988874
No 214
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=94.72 E-value=0.15 Score=46.55 Aligned_cols=103 Identities=12% Similarity=0.225 Sum_probs=72.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcC----CCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhccc-CCCCcc
Q psy9620 324 GWAAVGIHGDKSQQERDYVLKEFRNG----RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTG-RSDNTG 398 (453)
Q Consensus 324 ~~~~~~~h~~~~~~~r~~~~~~f~~g----~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRag-R~g~~g 398 (453)
++.+..++++.+... -.|.++ ...|+|.=+.++||+.+++..+.....-+.+.++++||.=--| |.|...
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 466666665544322 333333 3789999999999999999999999888898899999853334 566778
Q ss_pred eEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHh
Q psy9620 399 TSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALAS 435 (453)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~ 435 (453)
.|-++++++-...+..+.+ ..+++.+.|..|+.
T Consensus 185 l~Ri~~~~~l~~~f~~i~~----~~e~lr~~i~~~~~ 217 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE----AEEELREEIKEMAN 217 (239)
T ss_pred ceEEecCHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 8999988765555555444 34456666666654
No 215
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.69 E-value=0.13 Score=53.64 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 137 TPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 137 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
.++|+.|+...+..+-++|.+++|+|||.+.. -++..+..... ....++++++||..-|..+.+.+.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~---~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLAD---GERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcC---CCCcEEEEECCcHHHHHHHHHHHH
Confidence 58999999999999999999999999996532 22322322111 123568899999998888776554
No 216
>KOG1133|consensus
Probab=94.52 E-value=2.5 Score=43.76 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=89.6
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCe-------EEEEcCCCCHHHHHHHHHHHh----cCCCcEE
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA-------AVGIHGDKSQQERDYVLKEFR----NGRAGIL 354 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-------~~~~h~~~~~~~r~~~~~~f~----~g~~~vL 354 (453)
..|-..+..+...-.+-+++|++|.+....+...+.+.|+- .++.-..-+ -+.+++.|. .|.-.||
T Consensus 615 ~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiL 691 (821)
T KOG1133|consen 615 KDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAIL 691 (821)
T ss_pred HHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEE
Confidence 34444445555555688999999999999999998865432 222222212 355677665 4555677
Q ss_pred EEe--ccCccCCCCCC--CcEEEEcCCCCC--------------------------------hhHHHHhhhcccCCCCcc
Q psy9620 355 VAT--DVAARGLDVDD--VKFVINFDYPNN--------------------------------SEDYIHRIGRTGRSDNTG 398 (453)
Q Consensus 355 vaT--~~~~~GiDip~--v~~VI~~d~p~s--------------------------------~~~y~qr~GRagR~g~~g 398 (453)
+|. --+++|||+.| .+.||..++|.. +...-|-+|||-|.-++=
T Consensus 692 laVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DY 771 (821)
T KOG1133|consen 692 LAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDY 771 (821)
T ss_pred EEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 665 57899999986 557887777632 111258899999987777
Q ss_pred eEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHHHhhcC
Q psy9620 399 TSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALASRSG 438 (453)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~~~~~~ 438 (453)
-++++++..=. +... ..+|.|+........
T Consensus 772 A~i~LlD~RY~---~p~~-------RKLp~WI~~~v~s~~ 801 (821)
T KOG1133|consen 772 ASIYLLDKRYA---RPLS-------RKLPKWIRKRVHSKA 801 (821)
T ss_pred eeEEEehhhhc---Cchh-------hhccHHHHhHhcccc
Confidence 77777764321 1111 167888866654433
No 217
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.50 E-value=0.13 Score=53.37 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 137 TPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 137 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
.+.|+.|+..++..+-++++++.|+|||.+. ..++..+...... ...+++++++||-.-|..+.+.+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~--~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK--QGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc--cCCCcEEEECCcHHHHHHHHHHHHh
Confidence 3789999999999999999999999999753 2223323222110 0135799999998888777665543
No 218
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.40 E-value=0.061 Score=50.86 Aligned_cols=61 Identities=25% Similarity=0.149 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHhcCC-cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHH
Q psy9620 132 GFDRPTPIQAQGWPIAMSGS-NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQ 201 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~-d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q 201 (453)
.|..+++-|...+-.+...+ ++|+++.||||||.. +-.++..+. ..-++|.+--|.||..+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~--------~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFID--------SDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCC--------CcccEEEEeehhhhccC
Confidence 57889999999998777654 999999999999953 121221111 12268888888887444
No 219
>PHA00370 III attachment protein
Probab=94.36 E-value=0.11 Score=46.13 Aligned_cols=11 Identities=27% Similarity=0.304 Sum_probs=5.2
Q ss_pred CCcEEEEEcCC
Q psy9620 185 DGPIVLVLAPT 195 (453)
Q Consensus 185 ~~~~vlil~Pt 195 (453)
.++.-+|+.|.
T Consensus 243 n~C~~FV~~~g 253 (297)
T PHA00370 243 HGCTPFVFAQG 253 (297)
T ss_pred CCCCcceeecc
Confidence 44444555444
No 220
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.32 E-value=0.11 Score=51.01 Aligned_cols=60 Identities=28% Similarity=0.339 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHH------hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 135 RPTPIQAQGWPIA------MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 135 ~~~~~Q~~~i~~i------~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
++++-|+.++..+ .++..+++.++-|+|||.. +-.+...... .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc------ccceEEEecchHHHHHhc
Confidence 3678899998888 5688999999999999954 3333333221 356799999998877766
No 221
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.19 E-value=0.12 Score=58.75 Aligned_cols=66 Identities=29% Similarity=0.225 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 136 PTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
+|+-|.++|. ..+++++|.|..|||||.+.+--++..+.... +--++|+|+=|+..|..+.+.+.+
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~-----~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV-----DIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC-----CHhhEEEEeccHHHHHHHHHHHHH
Confidence 6889999997 36889999999999999876555555444321 113499999999999887766554
No 222
>KOG1596|consensus
Probab=94.07 E-value=0.17 Score=45.17 Aligned_cols=6 Identities=50% Similarity=0.478 Sum_probs=2.5
Q ss_pred cEEEEE
Q psy9620 187 PIVLVL 192 (453)
Q Consensus 187 ~~vlil 192 (453)
.++|+|
T Consensus 158 sKVLYL 163 (317)
T KOG1596|consen 158 SKVLYL 163 (317)
T ss_pred ceEEEe
Confidence 344443
No 223
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.03 E-value=0.19 Score=56.31 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=62.3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cCccCCCCCCCcEEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-VAARGLDVDDVKFVI 373 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~GiDip~v~~VI 373 (453)
..+++|.|||+.-|.++++.|.+. ++.+..+++..+..++..+++.+++|..+|||+|. .+...+++.++.+||
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 568999999999999999888753 45778899999999999999999999999999996 444456677888766
No 224
>PHA00370 III attachment protein
Probab=94.02 E-value=0.25 Score=43.96 Aligned_cols=6 Identities=67% Similarity=1.381 Sum_probs=2.2
Q ss_pred CCCCCC
Q psy9620 22 GGGYGG 27 (453)
Q Consensus 22 ~~g~g~ 27 (453)
+|.+||
T Consensus 102 ggn~gG 107 (297)
T PHA00370 102 GGNTGG 107 (297)
T ss_pred CCCCCC
Confidence 333333
No 225
>COG4371 Predicted membrane protein [Function unknown]
Probab=94.01 E-value=0.098 Score=46.41 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=4.7
Q ss_pred CcchhhhhHHHH
Q psy9620 161 SGKTLAYMLPAI 172 (453)
Q Consensus 161 sGKT~~~~l~~l 172 (453)
.|.+.+.+-+.|
T Consensus 177 ~Gr~~vlQEA~L 188 (334)
T COG4371 177 AGRARVLQEAAL 188 (334)
T ss_pred chHHHHHHHHHH
Confidence 344444333333
No 226
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.91 E-value=0.079 Score=51.11 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=28.6
Q ss_pred HHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 146 IAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 146 ~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
++..+++++++++||||||.. +-.++..+. ..-+++.+-.+.||
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~--------~~~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIP--------PQERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccC--------CCCCEEEECCCccc
Confidence 344788999999999999954 333333332 12346666677665
No 227
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.84 E-value=0.27 Score=50.45 Aligned_cols=86 Identities=27% Similarity=0.373 Sum_probs=62.9
Q ss_pred hhhHHHHHHhhh--cCCCCc-EEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy9620 285 ENKLFGLLNDIS--SKDENK-TIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVA 356 (453)
Q Consensus 285 ~~~l~~ll~~~~--~~~~~~-~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLva 356 (453)
...++.+|+.+. ...... +||+++|++-|.++++.+... ++.+..++|+++...+...++. | .+||||
T Consensus 81 ~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVa 156 (513)
T COG0513 81 AAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVA 156 (513)
T ss_pred HHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEE
Confidence 344555666654 222222 999999999999999988753 4668899999987777654444 6 999999
Q ss_pred ec-----cCccC-CCCCCCcEEEE
Q psy9620 357 TD-----VAARG-LDVDDVKFVIN 374 (453)
Q Consensus 357 T~-----~~~~G-iDip~v~~VI~ 374 (453)
|+ .+.++ +|+..+.++|.
T Consensus 157 TPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 157 TPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred CccHHHHHHHcCCcchhhcCEEEe
Confidence 97 45566 88889998774
No 228
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.80 E-value=3.2 Score=40.61 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=35.9
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEE
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCV 220 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 220 (453)
++.+.+++|||.|||.+..=.+....+.. ++...+||.+.|--... .++++.++.-.++.+.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-----~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv 266 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-----KKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVV 266 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-----cCcceEEEEeccchhhH--HHHHHHHHHHhCCceEEe
Confidence 67789999999999977443222222111 23445777776543321 234444444455555544
No 229
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.79 E-value=0.1 Score=45.43 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=26.7
Q ss_pred hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
.+++++++.+++|+|||..+...+-. +.. .+..|+++ ++.+|...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~-~~~-------~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANE-AIR-------KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHH-HHH-------TT--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHH-hcc-------CCcceeEe-ecCceeccc
Confidence 35789999999999999765443333 332 23346554 555665554
No 230
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.78 E-value=0.16 Score=48.87 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=27.4
Q ss_pred HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
+..+++++++++||||||.. +-.++..+.. .-+++.+=-+.||
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~--------~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPA--------IERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCC--------CCeEEEecCCCcc
Confidence 44688999999999999954 3444444322 2345555455554
No 231
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.60 E-value=0.12 Score=52.66 Aligned_cols=50 Identities=26% Similarity=0.535 Sum_probs=40.3
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.+++++||||||||..+++|.+.... + .+||+=|--||........++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~---------~-s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYP---------G-SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhcc---------C-CEEEEECCCcHHHHHHHHHHHCC
Confidence 47999999999999999999875321 1 38888999999888777777664
No 232
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.56 E-value=0.22 Score=53.69 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..+++-|.+++... ..+++|.|..|||||.+..--+...+ ..... ..-++|+++-|+..|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li-~~~~i---~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLI-AEKNV---APWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHH-HcCCC---CHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 36899999998753 56899999999999977544433333 22111 12359999999999999999888774
No 233
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.48 E-value=0.16 Score=49.47 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=18.8
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
.+.-+++++|||||||... -.++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4667899999999999653 3344444
No 234
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.38 E-value=0.2 Score=43.94 Aligned_cols=32 Identities=34% Similarity=0.348 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHh-cCCcEEEEecCCCcchhh
Q psy9620 135 RPTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~ 166 (453)
.+++.|.+.+.... .+..+++++|||||||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 46777888877654 688999999999999965
No 235
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.35 E-value=0.18 Score=49.18 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=17.9
Q ss_pred CCcEEEEecCCCcchhhhhHHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAI 172 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l 172 (453)
+..+++++|||+|||.+....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999987644433
No 236
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.21 E-value=0.079 Score=52.38 Aligned_cols=48 Identities=27% Similarity=0.397 Sum_probs=37.8
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
+++++|+||||||.++++|.+... ...+||+=|--|+........++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999999987532 124888899999988776666654
No 237
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.18 E-value=0.25 Score=48.26 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=19.7
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINH 177 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~ 177 (453)
....+++++|||||||.. +..++.++..
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 345689999999999964 3455555543
No 238
>KOG1016|consensus
Probab=93.15 E-value=0.35 Score=50.24 Aligned_cols=117 Identities=16% Similarity=0.248 Sum_probs=92.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCC------------------eEEEEcCCCCHHHHHHHHHHHhcC---CCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGW------------------AAVGIHGDKSQQERDYVLKEFRNG---RAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~------------------~~~~~h~~~~~~~r~~~~~~f~~g---~~~vLvaT~ 358 (453)
..++|||..+....+.+.+.|.+..+ .-..+.|..+..+|+..+++|.+- ..-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 45899999999998888888876422 223567888999999999999853 246889999
Q ss_pred cCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHH
Q psy9620 359 VAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 416 (453)
.-.-||++-..+.+|.||.-++..-=.|.+-|+-|.|+.-.|+++=.--|....+++.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIy 856 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIY 856 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHH
Confidence 9999999988889999999888888889888999999888888775554444444433
No 239
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.12 E-value=0.16 Score=52.76 Aligned_cols=50 Identities=22% Similarity=0.277 Sum_probs=41.0
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
++++++||||||||..+++|.+.... .-+||+=|--|+........++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~----------~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE----------DSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC----------CCEEEEeCcHHHHHHHHHHHHHCC
Confidence 57899999999999999999987531 238889999999988877777653
No 240
>KOG0339|consensus
Probab=93.02 E-value=1.3 Score=44.06 Aligned_cols=68 Identities=25% Similarity=0.401 Sum_probs=52.2
Q ss_pred cEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec--c----CccCCCCCCCcE
Q psy9620 302 KTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD--V----AARGLDVDDVKF 371 (453)
Q Consensus 302 ~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~--~----~~~GiDip~v~~ 371 (453)
-.+|.|+|++.|.++...-+. .++.++.+|++++..++...++ -..-|+|||+ + --.++|+..|++
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeE
Confidence 357788999998887766544 4789999999999988877666 3577999997 1 225788888887
Q ss_pred EE
Q psy9620 372 VI 373 (453)
Q Consensus 372 VI 373 (453)
++
T Consensus 374 LV 375 (731)
T KOG0339|consen 374 LV 375 (731)
T ss_pred EE
Confidence 66
No 241
>PRK13764 ATPase; Provisional
Probab=92.96 E-value=0.21 Score=51.71 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=20.0
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHIN 176 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~ 176 (453)
..++++++++||||||.. +..++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 467899999999999964 344555543
No 242
>PRK14701 reverse gyrase; Provisional
Probab=92.88 E-value=0.66 Score=53.92 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=54.1
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV 359 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 359 (453)
...++||.+||+.-+.++++.|... +..+..+||+++..++..+++.+++|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 3458999999999999999998863 466788999999999999999999999999999985
No 243
>KOG1133|consensus
Probab=92.84 E-value=0.13 Score=52.60 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHh----cCCcEEEEecCCCcchhhhhHHHHHHhhh
Q psy9620 135 RPTPIQAQGWPIAM----SGSNMVGVAQTGSGKTLAYMLPAIVHINH 177 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~l~~l~~~~~ 177 (453)
+|+.+|.+.+..+. .|+--|+.+|||+|||++.+-.++..+..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 79999999887655 68888999999999999887777766544
No 244
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.84 E-value=0.73 Score=40.78 Aligned_cols=83 Identities=27% Similarity=0.343 Sum_probs=57.2
Q ss_pred HHHHHHhhhcC---CCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-
Q psy9620 288 LFGLLNDISSK---DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV- 359 (453)
Q Consensus 288 l~~ll~~~~~~---~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~- 359 (453)
++.++..+... ...++||.|+++..+.+.+..+... +..+..++++.+..+.....+ +...|+|+|.-
T Consensus 54 ~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~ 129 (203)
T cd00268 54 LIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGR 129 (203)
T ss_pred HHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHH
Confidence 44455554433 3558999999999998888776654 677888999888766543332 67899999952
Q ss_pred ----Ccc-CCCCCCCcEEEE
Q psy9620 360 ----AAR-GLDVDDVKFVIN 374 (453)
Q Consensus 360 ----~~~-GiDip~v~~VI~ 374 (453)
+.. -.+++++.++|.
T Consensus 130 l~~~l~~~~~~~~~l~~lIv 149 (203)
T cd00268 130 LLDLLERGKLDLSKVKYLVL 149 (203)
T ss_pred HHHHHHcCCCChhhCCEEEE
Confidence 222 256778887764
No 245
>KOG1132|consensus
Probab=92.56 E-value=0.44 Score=50.32 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHh----cCCcEEEEecCCCcchhhhhHHHHHHhhhcC-----------C-----CCC-----------
Q psy9620 135 RPTPIQAQGWPIAM----SGSNMVGVAQTGSGKTLAYMLPAIVHINHQS-----------Q-----LKP----------- 183 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~-----------~-----~~~----------- 183 (453)
+|++.|...+..++ ...+.++..|||+|||++.+-..|....+.. + ..+
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 78999998887766 4678999999999999886655544332211 0 000
Q ss_pred -------CCCcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 184 -------GDGPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 184 -------~~~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
..-|++.+-+-|..-..|+.+++++.+..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 01467777777777778888888887644
No 246
>KOG1131|consensus
Probab=92.55 E-value=0.71 Score=45.98 Aligned_cols=72 Identities=15% Similarity=0.096 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHh----cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 133 FDRPTPIQAQGWPIAM----SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
|...+|-|-+-+..+. .+.++++.+|+|+|||.+.+-.++.+..+.+. .-.+.++.+-|..=.+....+++.
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHHHHH
Confidence 5677888877765443 46689999999999998877666666555442 233566766665555555444443
No 247
>PRK08181 transposase; Validated
Probab=92.43 E-value=0.41 Score=44.55 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=34.6
Q ss_pred CCHHHHHHHH----HHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 136 PTPIQAQGWP----IAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 136 ~~~~Q~~~i~----~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
+.+.|..++. .+..++++++++|+|+|||......+.. +.. .+..|+++ +..+|..++.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~-a~~-------~g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLA-LIE-------NGWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHH-HHH-------cCCceeee-eHHHHHHHHH
Confidence 4455555553 2336789999999999999654332222 222 23335444 5566666654
No 248
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.31 E-value=0.2 Score=47.73 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHH-HHhcCCcEEEEecCCCcchhhhhHHHHHHh
Q psy9620 133 FDRPTPIQAQGWP-IAMSGSNMVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 133 ~~~~~~~Q~~~i~-~i~~g~d~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
+..+++.|..-+. ++..+++++++++||||||. ++.+++..+
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I 167 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI 167 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC
Confidence 4457777766554 45578999999999999995 455555544
No 249
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.30 E-value=0.2 Score=49.94 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhcCC--cEEEEecCCCcchhhhhHHHHHHhhh
Q psy9620 136 PTPIQAQGWPIAMSGS--NMVGVAQTGSGKTLAYMLPAIVHINH 177 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~l~~l~~~~~ 177 (453)
+++.|.+.+..+++.. =+|+.+|||||||.+ +..++..++.
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 4778888887777543 367889999999965 4556665544
No 250
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.03 E-value=0.28 Score=47.41 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=39.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHh-cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 125 LKEVKRQGFDRPTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 125 ~~~l~~~g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
++.+.+.|+ +++.+.+.+..+. .+.+++++++||+|||... -.++..+. ...+.+++-.+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~--------~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVA--------PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCC--------CCCcEEEECCccee
Confidence 445555555 5667777776554 5779999999999999542 22222221 12346666666665
No 251
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.96 E-value=0.42 Score=46.41 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=26.1
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
.+..+++++|||||||... ..++..+... ...+++.+-...|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcC------CCCEEEEEcCChhh
Confidence 3567899999999999653 3344433221 23356666555554
No 252
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.80 E-value=0.97 Score=46.74 Aligned_cols=84 Identities=19% Similarity=0.343 Sum_probs=66.2
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHH----HHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-Ccc
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKS----IQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-AAR 362 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~----L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~ 362 (453)
++.++..+ ..+.++.+-+||---|++.+.. |...++.+..+.|.+...+|.++++...+|.++|+|.|-+ +..
T Consensus 301 ~laml~ai--~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd 378 (677)
T COG1200 301 LLAMLAAI--EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD 378 (677)
T ss_pred HHHHHHHH--HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc
Confidence 34444444 2356899999997666555544 5556899999999999999999999999999999999975 457
Q ss_pred CCCCCCCcEEE
Q psy9620 363 GLDVDDVKFVI 373 (453)
Q Consensus 363 GiDip~v~~VI 373 (453)
.+++.+.-+||
T Consensus 379 ~V~F~~LgLVI 389 (677)
T COG1200 379 KVEFHNLGLVI 389 (677)
T ss_pred ceeecceeEEE
Confidence 78888888777
No 253
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=91.78 E-value=0.22 Score=52.51 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=38.1
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
++++++||||||||..+++|-+.... ..+||+=|--|+........++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~----------gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK----------GSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC----------CCEEEEeCCchHHHHHHHHHHhC
Confidence 48999999999999999999986431 13788888888877766655554
No 254
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.74 E-value=0.33 Score=44.82 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=34.7
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
++.++++.+++|+|||..+...... +.. .+. -++++++-+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~-l~~-------~g~-sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE-LLK-------AGI-SVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH-HHH-------cCC-eEEEEEHHHHHHHHHHHHhc
Confidence 5789999999999999654333333 322 233 34556888898887776554
No 255
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.68 E-value=0.29 Score=44.74 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=37.1
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|..+++.+++|+|||...+--+...+. .+-.+++++ +.+-..|+.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~--------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4678899999999999755443444332 244578877 5567778888887765
No 256
>PRK10436 hypothetical protein; Provisional
Probab=91.65 E-value=0.37 Score=48.50 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHh--cCCcEEEEecCCCcchhhhhHHHHHHh
Q psy9620 136 PTPIQAQGWPIAM--SGSNMVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 136 ~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
+.+.|.+.+..++ ...-+|+++|||||||.+. ..++..+
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 3455666665554 3446889999999999753 4455554
No 257
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.50 E-value=18 Score=37.05 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=16.7
Q ss_pred cCCcEEEEecCCCcchhhhhH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l 169 (453)
.++.+++++|||+|||.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456788999999999976543
No 258
>KOG0338|consensus
Probab=91.48 E-value=1.4 Score=43.87 Aligned_cols=70 Identities=13% Similarity=0.259 Sum_probs=55.9
Q ss_pred CcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-------CccCCCCCCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-------AARGLDVDDV 369 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-------~~~GiDip~v 369 (453)
-++||.|+|++-+-+++...++. .+.+...-|+++-..++.+++. ..+|+|||+= -+.++|+.++
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhHHHHhccCCCccccce
Confidence 48999999999988877776553 6788888999999999888876 6789999982 3467777777
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
.++|.
T Consensus 329 EVLvl 333 (691)
T KOG0338|consen 329 EVLVL 333 (691)
T ss_pred eEEEe
Confidence 77665
No 259
>PRK05973 replicative DNA helicase; Provisional
Probab=91.46 E-value=0.56 Score=42.71 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.++|.. +..--+..|.-++|.|++|+|||...+--+...+. .+..++|++- -+-..|+.+.+..++
T Consensus 50 ~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~--------~Ge~vlyfSl-Ees~~~i~~R~~s~g 115 (237)
T PRK05973 50 ATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK--------SGRTGVFFTL-EYTEQDVRDRLRALG 115 (237)
T ss_pred CCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEE-eCCHHHHHHHHHHcC
Confidence 455532 23334456778899999999999655443433332 2344777753 334677777777763
No 260
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=0.12 Score=48.33 Aligned_cols=21 Identities=48% Similarity=0.578 Sum_probs=17.1
Q ss_pred hcCCcEEEEecCCCcchhhhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~ 168 (453)
++..|+++++|||||||+.+.
T Consensus 95 L~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH
Confidence 355689999999999997553
No 261
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.38 E-value=6.4 Score=47.20 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
.+++-|.+++..++.. +-.+++++.|+|||.+ +-.+..+... .+..+++++||-.-+.++.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~------~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASE------QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHH
Confidence 5889999999998865 5678899999999954 2333333322 366799999998877766554
No 262
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=91.30 E-value=1.1 Score=49.66 Aligned_cols=62 Identities=19% Similarity=0.092 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHhc-CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMS-GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
.+++-|.+++..+.. ++-++++++.|+|||.+. -++...+.. .+..++.++||---+..+.+
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~-------~G~~V~g~ApTgkAA~~L~e 443 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA-------AGYRVVGGALAGKAAEGLEK 443 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH-------cCCeEEEEcCcHHHHHHHHH
Confidence 799999999998864 556789999999999542 233333322 36679999999887776644
No 263
>KOG0331|consensus
Probab=91.16 E-value=1.6 Score=44.06 Aligned_cols=90 Identities=13% Similarity=0.294 Sum_probs=67.5
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCccC-CCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAARG-LDVDDV 369 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-iDip~v 369 (453)
...+||.++|++-|..+...+... .+.+.+++|+.+...+..-+++ -+.|+|||. .+..| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccce
Confidence 346999999999999999988765 4558889999887766555443 578999996 45555 788899
Q ss_pred cEEEE--------cCCCCChhHHHHhhhcccC
Q psy9620 370 KFVIN--------FDYPNNSEDYIHRIGRTGR 393 (453)
Q Consensus 370 ~~VI~--------~d~p~s~~~y~qr~GRagR 393 (453)
+++|. .++-..+...++.+.|.-|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 98873 3344456777777777666
No 264
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.90 E-value=1 Score=49.40 Aligned_cols=75 Identities=15% Similarity=0.271 Sum_probs=65.5
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cCccCCCCCCCcEEE
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-VAARGLDVDDVKFVI 373 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~GiDip~v~~VI 373 (453)
..+++.|.|||---|++-++.|++. .+.|..+.--.+..|..++++..++|+++|||.|- .+...|-+.|.-+||
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 3578999999999888888887764 56677888889999999999999999999999995 778889999999888
No 265
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.86 E-value=1.4 Score=44.81 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=33.9
Q ss_pred HHHHHHHHHh--cCCCcEEEEeccCccCCCCCCCcEEEEcC------CCCC----hhHHHHhhhcccCC
Q psy9620 338 ERDYVLKEFR--NGRAGILVATDVAARGLDVDDVKFVINFD------YPNN----SEDYIHRIGRTGRS 394 (453)
Q Consensus 338 ~r~~~~~~f~--~g~~~vLvaT~~~~~GiDip~v~~VI~~d------~p~s----~~~y~qr~GRagR~ 394 (453)
+-+..++.+. +..++++++.|.+-+|.|+-+.--|=-++ -... ...=.|-+||..|.
T Consensus 316 e~~lllnsled~dnpir~if~vd~lnegwdvlnlfdmr~i~rrk~~an~kk~~~~TikekQLIGRGaRY 384 (812)
T COG3421 316 ESMLLLNSLEDRDNPIRVIFSVDKLNEGWDVLNLFDMRGIKRRKKMANDKKLAAATIKEKQLIGRGARY 384 (812)
T ss_pred HHHHHHhhhhhcCCCeEEEEEeecccccchhhhhhhHHHHHHHHhhhcccchhhhhhhHHHHHhcccee
Confidence 3344455543 57899999999999999874321100000 0111 22337899998885
No 266
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.85 E-value=0.49 Score=44.03 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHhc--CCcEEEEecCCCcchhhhhHHHHHHh
Q psy9620 137 TPIQAQGWPIAMS--GSNMVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 137 ~~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
.+.|.+.+..++. +..++++++||||||... ..++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 4446666655443 345889999999999653 3344444
No 267
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.80 E-value=0.91 Score=46.20 Aligned_cols=59 Identities=15% Similarity=0.323 Sum_probs=55.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
.+.+||.+|+++-+.+..+.|...++.+..++++.+..++..++..+..++.+||++|+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 45799999999999999999999999999999999999999999999999999999997
No 268
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.73 E-value=0.33 Score=43.99 Aligned_cols=54 Identities=26% Similarity=0.312 Sum_probs=34.8
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|..+++.+++|+|||...+--+...+... +-.+++++ +.+-..++.+.+..++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs-~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVS-FEEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEE-SSS-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 467889999999999966544444444430 22377776 4555677777777764
No 269
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=90.67 E-value=1.1 Score=41.82 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=25.7
Q ss_pred EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 153 MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
.+|.+||||||+- +|..+.....+.+ ..-.|++|+|++...
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~lI~P-~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQLIQP-PPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCcccC-CCCceEEECCCCCCC
Confidence 4678999999993 2333433332222 233589999988753
No 270
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.60 E-value=0.28 Score=45.88 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=28.0
Q ss_pred hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
..+.+++++|+||||||... ..++..+... ..+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~-------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE-------DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT-------TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc-------ccceEEeccccce
Confidence 45789999999999999653 4445444322 2456777666665
No 271
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.59 E-value=0.47 Score=41.38 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=32.7
Q ss_pred EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 153 MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+++.+++|+|||...+--+...+. .+..+++++. .+...++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~--------~g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA--------RGEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH--------CCCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 689999999999755433333332 2445777754 466778777777763
No 272
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=90.51 E-value=0.34 Score=50.96 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=38.9
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..++++.||||||||..+++|-|.... ..+||+=|--|+........++.
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~~----------~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTWP----------GSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhCC----------CCEEEEeCcchHHHHHHHHHHhC
Confidence 368999999999999999999986532 13788888888877766655554
No 273
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=90.49 E-value=1.9 Score=41.48 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHhcC----CcEEEEecCCCcchhhhhHHHHHHhhhcCC-------------CCCCCCcEEEEEcCCH-
Q psy9620 135 RPTPIQAQGWPIAMSG----SNMVGVAQTGSGKTLAYMLPAIVHINHQSQ-------------LKPGDGPIVLVLAPTR- 196 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g----~d~li~a~TGsGKT~~~~l~~l~~~~~~~~-------------~~~~~~~~vlil~Ptr- 196 (453)
.++|+|...|..+... +-+|+++|.|.|||..+..-+-..+...+. ...++.|.+.++.|..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~ 82 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA 82 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC
Confidence 3579999999887743 358899999999996654433222222111 1123567788888842
Q ss_pred ---HHHHHHHHHHHHhcC---CCCceEEEE
Q psy9620 197 ---ELAQQIQEVARDFGS---STYLRSTCV 220 (453)
Q Consensus 197 ---~La~q~~~~~~~~~~---~~~~~~~~~ 220 (453)
.-++|+.+....+.. ..+.++..+
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI 112 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLI 112 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCeEEEE
Confidence 345666665444432 234455544
No 274
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=90.44 E-value=1.8 Score=41.32 Aligned_cols=89 Identities=17% Similarity=0.277 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHHh----cCC---cEEEEecCCCcchhhhhHHHHHHhhhcC-C----------CCCCCCcEEEEE--
Q psy9620 133 FDRPTPIQAQGWPIAM----SGS---NMVGVAQTGSGKTLAYMLPAIVHINHQS-Q----------LKPGDGPIVLVL-- 192 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~l~~l~~~~~~~-~----------~~~~~~~~vlil-- 192 (453)
+..++|+|..+|..+. +++ -+|+.+|.|.||+..+..-+ ..+.-.. . ...++.|...++
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA-~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~ 80 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALA-EHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF 80 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH-HHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec
Confidence 3468899999998766 333 58999999999996654322 2222211 1 112456777777
Q ss_pred cCCH--------HHHHHHHHHHHHhcC---CCCceEEEEeC
Q psy9620 193 APTR--------ELAQQIQEVARDFGS---STYLRSTCVYG 222 (453)
Q Consensus 193 ~Ptr--------~La~q~~~~~~~~~~---~~~~~~~~~~g 222 (453)
.|.. ..++|+.+....+.. ..+.+++++..
T Consensus 81 ~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ 121 (319)
T PRK08769 81 IPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDP 121 (319)
T ss_pred CCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEecc
Confidence 6742 235565555444421 12345555443
No 275
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.43 E-value=0.24 Score=45.06 Aligned_cols=15 Identities=40% Similarity=0.508 Sum_probs=12.8
Q ss_pred cEEEEecCCCcchhh
Q psy9620 152 NMVGVAQTGSGKTLA 166 (453)
Q Consensus 152 d~li~a~TGsGKT~~ 166 (453)
=+|++++|||||+.+
T Consensus 129 LviiVGaTGSGKSTt 143 (375)
T COG5008 129 LVIIVGATGSGKSTT 143 (375)
T ss_pred eEEEECCCCCCchhh
Confidence 367889999999965
No 276
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=90.38 E-value=1.9 Score=43.76 Aligned_cols=69 Identities=20% Similarity=0.384 Sum_probs=51.6
Q ss_pred cEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec------cCccCCCCCCCcE
Q psy9620 302 KTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD------VAARGLDVDDVKF 371 (453)
Q Consensus 302 ~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~GiDip~v~~ 371 (453)
++||.++|++-|.++.+.+... ++.+..++++.+..++...+ .+..+|||||. .....+++..+.+
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL----RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHH----cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 6999999999999988887753 56778889988866543322 35789999996 1234567888887
Q ss_pred EEE
Q psy9620 372 VIN 374 (453)
Q Consensus 372 VI~ 374 (453)
||.
T Consensus 153 lVi 155 (456)
T PRK10590 153 LVL 155 (456)
T ss_pred EEe
Confidence 764
No 277
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.34 E-value=1.2 Score=46.54 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=51.8
Q ss_pred CcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCcc--CCCCCCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAAR--GLDVDDV 369 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~--GiDip~v 369 (453)
.++||.++|++-|.++++.+... ++.+..+||+.+...+...++ ...+|||+|. .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----QGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----CCCCEEEECHHHHHHHHHhccccchhhe
Confidence 58999999999999998887653 677889999988766554443 4678999995 2222 3667777
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
.+||.
T Consensus 161 ~~lVi 165 (572)
T PRK04537 161 EICVL 165 (572)
T ss_pred eeeEe
Confidence 76653
No 278
>KOG1805|consensus
Probab=90.29 E-value=2 Score=46.11 Aligned_cols=81 Identities=21% Similarity=0.126 Sum_probs=55.8
Q ss_pred ccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCc-EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 117 EANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSN-MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 117 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
...+.+.+.+. -+..++..|++|+..++.-+| .+|.+=+|+|||.+.... +..+.. .+.+||+.+-|
T Consensus 655 ~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~~-------~gkkVLLtsyT 722 (1100)
T KOG1805|consen 655 SKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLL-IKILVA-------LGKKVLLTSYT 722 (1100)
T ss_pred ccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHHH-------cCCeEEEEehh
Confidence 34455555553 244789999999999887666 577899999999764322 222222 36679999999
Q ss_pred HHHHHHHHHHHHHh
Q psy9620 196 RELAQQIQEVARDF 209 (453)
Q Consensus 196 r~La~q~~~~~~~~ 209 (453)
..-+..+.-.++.+
T Consensus 723 hsAVDNILiKL~~~ 736 (1100)
T KOG1805|consen 723 HSAVDNILIKLKGF 736 (1100)
T ss_pred hHHHHHHHHHHhcc
Confidence 88777776666654
No 279
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.24 E-value=17 Score=35.87 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=16.3
Q ss_pred CcEEEEecCCCcchhhhhHHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~ 171 (453)
+.+++++|||+|||......+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 467899999999997754433
No 280
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=90.23 E-value=0.47 Score=49.96 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=36.4
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVA 206 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~ 206 (453)
++++++||||||||..+++|.|... +..+||+=|--|+........
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~----------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW----------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC----------CCCEEEEeCcHHHHHHHHHHH
Confidence 5799999999999999999998642 223888889999876655544
No 281
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.18 E-value=0.36 Score=50.17 Aligned_cols=44 Identities=27% Similarity=0.386 Sum_probs=28.8
Q ss_pred HHHCCCCCCCHHHHHHHHHHhc--CCcEEEEecCCCcchhhhhHHHHHHh
Q psy9620 128 VKRQGFDRPTPIQAQGWPIAMS--GSNMVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 128 l~~~g~~~~~~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
+.++|| .+.|.+.+..++. ..-+++++|||||||.+. ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 444554 5566667766553 345789999999999763 4455544
No 282
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=90.13 E-value=1.1 Score=50.69 Aligned_cols=60 Identities=20% Similarity=0.302 Sum_probs=51.3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCe---EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWA---AVGIHGDKSQQERDYVLKEFRNGRAGILVATDV 359 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~---~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 359 (453)
..++||.+||+.-|.++++.|... ++. +..+||+++..++...++.+.++..+|||+|+-
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 568999999999999998888754 333 335899999999999999999999999999974
No 283
>KOG0347|consensus
Probab=90.12 E-value=0.69 Score=46.39 Aligned_cols=67 Identities=18% Similarity=0.327 Sum_probs=54.6
Q ss_pred EEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----CccC-C---CCCCC
Q psy9620 303 TIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----AARG-L---DVDDV 369 (453)
Q Consensus 303 ~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-i---Dip~v 369 (453)
.|||++|++-|-++.+.|... ++.+..+.|+|....++.+++. ...|+|||+= +..+ . ++.++
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 899999999999999998764 7899999999999999998888 7789999982 2222 1 45677
Q ss_pred cEEE
Q psy9620 370 KFVI 373 (453)
Q Consensus 370 ~~VI 373 (453)
+++|
T Consensus 342 kcLV 345 (731)
T KOG0347|consen 342 KCLV 345 (731)
T ss_pred eEEE
Confidence 7665
No 284
>PRK06526 transposase; Provisional
Probab=90.06 E-value=0.38 Score=44.41 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=19.0
Q ss_pred HhcCCcEEEEecCCCcchhhhhHH
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLP 170 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~ 170 (453)
+..++++++++|+|+|||......
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHH
Confidence 346789999999999999765443
No 285
>PRK06835 DNA replication protein DnaC; Validated
Probab=90.03 E-value=1 Score=43.35 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=27.9
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
.+.++++.|+||+|||..... +...+.. .+..|+++ +..+|..++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~a-Ia~~l~~-------~g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNC-IAKELLD-------RGKSVIYR-TADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHH-------CCCeEEEE-EHHHHHHHHH
Confidence 357899999999999964332 2333332 24445554 5556655543
No 286
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=89.97 E-value=0.41 Score=50.27 Aligned_cols=50 Identities=28% Similarity=0.393 Sum_probs=38.8
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..++++.||||+|||..+++|.+... +.-+||+=|--|+........++.
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~----------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKW----------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcC----------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 35789999999999999999987532 223788889999988776665554
No 287
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=89.90 E-value=1.3 Score=44.98 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=53.5
Q ss_pred CcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCc-cCCCCCCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAA-RGLDVDDV 369 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~GiDip~v 369 (453)
.++||.|+|++-|.++++.++.. ++.+..++|+.+...+...++ ...+|+|+|. .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 37999999999999999887753 578888999998766654443 5688999994 232 35778888
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
.+||.
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 88774
No 288
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=89.82 E-value=0.58 Score=49.32 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
++=|.+.||+|||.||+-.|+..=..- .-.+-||+|||.+.-+-+...++..
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~Y------G~~KFIivVPs~AIkeGv~~~s~~~ 127 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKY------GLFKFIIVVPSLAIKEGVFLTSKET 127 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHh------CceeEEEEeccHHHHhhhHHHHHHH
No 289
>PRK06921 hypothetical protein; Provisional
Probab=89.70 E-value=2 Score=39.95 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=27.5
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
+.++++.+++|+|||.... .+...+... .+..|+++. ..++..++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~------~g~~v~y~~-~~~l~~~l~~ 163 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK------KGVPVLYFP-FVEGFGDLKD 163 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh------cCceEEEEE-HHHHHHHHHH
Confidence 5789999999999995432 233333321 144466554 4555555433
No 290
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=89.53 E-value=0.59 Score=45.60 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=36.5
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
-+||.+..|||||+.++-.+. .+.. ...+..++++++...|...+...+..-
T Consensus 3 v~~I~G~aGTGKTvla~~l~~-~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAK-ELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHH-Hhhc-----cccCCceEEEEecchHHHHHHHHHhhh
Confidence 468899999999977543332 2210 114566999999999999887777654
No 291
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=89.51 E-value=0.44 Score=49.79 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=38.4
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.++++.||||||||..+++|-+... +.-+||+=|--|+.......-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~----------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY----------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC----------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 5899999999999999999986532 113888889999987776655554
No 292
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=89.42 E-value=3.5 Score=39.53 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHh----cC---CcEEEEecCCCcchhhhhHHHHHHhhhcCC-------------CCCCCCcEEEEEcCC
Q psy9620 136 PTPIQAQGWPIAM----SG---SNMVGVAQTGSGKTLAYMLPAIVHINHQSQ-------------LKPGDGPIVLVLAPT 195 (453)
Q Consensus 136 ~~~~Q~~~i~~i~----~g---~d~li~a~TGsGKT~~~~l~~l~~~~~~~~-------------~~~~~~~~vlil~Pt 195 (453)
.+|+|+..|..+. ++ +-.|+.+|.|.||+..+..-+-..+...+. ...+..|.+.++.|.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 4688888887665 33 357899999999997654433222222211 112456778888883
Q ss_pred ---HHHHHHHHHHHHHh---cCCCCceEEEEeCCc
Q psy9620 196 ---RELAQQIQEVARDF---GSSTYLRSTCVYGGA 224 (453)
Q Consensus 196 ---r~La~q~~~~~~~~---~~~~~~~~~~~~gg~ 224 (453)
..-++|+.+....+ ....+.++..+....
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~ 117 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAE 117 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechh
Confidence 12355665544433 233345666554443
No 293
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=89.29 E-value=2 Score=43.13 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=52.9
Q ss_pred CcEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc------CccCCCCCCCc
Q psy9620 301 NKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV------AARGLDVDDVK 370 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~GiDip~v~ 370 (453)
.++||.++|++-|.++++.+.. .++.+..++|+.+..++..++ .+..+|||+|.- ....+++.++.
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~ 149 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAVE 149 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccCC
Confidence 5799999999999888776654 367899999998877765444 356789999961 22456778888
Q ss_pred EEEE
Q psy9620 371 FVIN 374 (453)
Q Consensus 371 ~VI~ 374 (453)
+||.
T Consensus 150 ~lVi 153 (434)
T PRK11192 150 TLIL 153 (434)
T ss_pred EEEE
Confidence 7774
No 294
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=89.22 E-value=0.57 Score=44.74 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=47.9
Q ss_pred CCCCCCCHHHHHHHHHHhcCC--cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHH
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGS--NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ 200 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~ 200 (453)
+|+..-+..|.-|+..++... =+.+.++.|||||+.++.+.+......+. -.++||.=|+..+-+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~ 290 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGE 290 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCccc
Confidence 477667778888998888543 35578999999999988888887766543 234777778876543
No 295
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.17 E-value=3.3 Score=36.56 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=13.7
Q ss_pred EEEEecCCCcchhhhh
Q psy9620 153 MVGVAQTGSGKTLAYM 168 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~ 168 (453)
+++++|||+|||.+..
T Consensus 4 i~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCchHhHHH
Confidence 6789999999997754
No 296
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=89.14 E-value=4.5 Score=37.98 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=59.4
Q ss_pred cccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----------CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCC
Q psy9620 116 AEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMS----------GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGD 185 (453)
Q Consensus 116 ~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----------g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 185 (453)
-.+.||+.+.. -..++..|.+++-.+.+ ..-.++--.||.||--...--|++.+.+.
T Consensus 24 y~~~lp~~~~~------~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------- 90 (303)
T PF13872_consen 24 YRLHLPEEVID------SGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------- 90 (303)
T ss_pred cccCCCHHHHh------cccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------
Confidence 34477776544 23578899998876542 33467777999999866555555555542
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 186 GPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 186 ~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
..++|+++.+-.|-.+..+.++.++..
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~ 117 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD 117 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC
Confidence 235999999999999999999988643
No 297
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.08 E-value=20 Score=35.92 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=16.1
Q ss_pred CCcEEEEecCCCcchhhhhH
Q psy9620 150 GSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l 169 (453)
++.+++++|||+|||.+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAK 240 (424)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999976543
No 298
>PRK08116 hypothetical protein; Validated
Probab=88.91 E-value=8.9 Score=35.73 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=26.9
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
.+++.+++|+|||..+. ++...+... +..+++ .+..+|..++..
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~-------~~~v~~-~~~~~ll~~i~~ 159 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK-------GVPVIF-VNFPQLLNRIKS 159 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc-------CCeEEE-EEHHHHHHHHHH
Confidence 49999999999996543 344444432 223444 455666666543
No 299
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.89 E-value=10 Score=37.15 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=16.8
Q ss_pred CCcEEEEecCCCcchhhhhHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~ 171 (453)
++.+++++|||+|||....-.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999997654433
No 300
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=88.80 E-value=4 Score=39.20 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHhc--C---CcEEEEecCCCcchhhhhHHHHHHhhhcCCC--------------CCCCCcEEEEEcCC
Q psy9620 136 PTPIQAQGWPIAMS--G---SNMVGVAQTGSGKTLAYMLPAIVHINHQSQL--------------KPGDGPIVLVLAPT 195 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~--g---~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~--------------~~~~~~~vlil~Pt 195 (453)
.+|+|+..|..+.. + +.+|+.+|.|+|||..+..-+-..+...+.. ..+..|...++.|+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~ 80 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPL 80 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecc
Confidence 36888888888763 2 3589999999999976544332222212110 12345788899885
No 301
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.72 E-value=3 Score=42.46 Aligned_cols=72 Identities=25% Similarity=0.323 Sum_probs=53.4
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc------CccCCCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV------AARGLDVDDV 369 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~GiDip~v 369 (453)
..++||.++|++-|.++++.+... ++.+..++++.+.... .+.+..+..+|||+|.- ..+.+.+.++
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~---~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHH---HHHHhCCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 357999999999999988887654 6788889998765543 34556678899999962 1234667777
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
++||.
T Consensus 239 ~~lVi 243 (475)
T PRK01297 239 EVMVL 243 (475)
T ss_pred ceEEe
Confidence 77664
No 302
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=88.72 E-value=1.6 Score=45.89 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=54.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
.+.+||.+|++.-+.+..+.|...++.+..+|++++..++..+++.+..+..+||++|.
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 45789999999999999999999999999999999999999999999999999999885
No 303
>KOG1513|consensus
Probab=88.72 E-value=0.77 Score=48.00 Aligned_cols=79 Identities=22% Similarity=0.402 Sum_probs=58.3
Q ss_pred HHHHhcCCCcEEEEeccCccCCCCCCCcEEE--------EcCCCCChhHHHHhhhcccCCCCc-ceEEEEEcC---CChH
Q psy9620 343 LKEFRNGRAGILVATDVAARGLDVDDVKFVI--------NFDYPNNSEDYIHRIGRTGRSDNT-GTSYTFFTQ---QNSR 410 (453)
Q Consensus 343 ~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI--------~~d~p~s~~~y~qr~GRagR~g~~-g~~~~~~~~---~~~~ 410 (453)
-++|.+|+..|-|-..+++-||-+..-+.|+ -..+|+|.+.-+|.+||+-|.++- +--|+|+-. .+.+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 4679999999999999999999987655554 477999999999999999998643 334554443 3455
Q ss_pred HHHHHHHHHHh
Q psy9620 411 QAKDLIDVLTE 421 (453)
Q Consensus 411 ~~~~l~~~l~~ 421 (453)
++.-+.+.|+.
T Consensus 930 FAS~VAKRLES 940 (1300)
T KOG1513|consen 930 FASIVAKRLES 940 (1300)
T ss_pred HHHHHHHHHHh
Confidence 55544445544
No 304
>KOG1001|consensus
Probab=88.35 E-value=0.14 Score=53.78 Aligned_cols=102 Identities=17% Similarity=0.178 Sum_probs=88.2
Q ss_pred CcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC-Cc-EEEEeccCccCCCCCCCcEEEEcCCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR-AG-ILVATDVAARGLDVDDVKFVINFDYP 378 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~~~GiDip~v~~VI~~d~p 378 (453)
.++|||++-...++.+...|...++....+.|.|+...|..++..|..+. .+ .+++..+...|+++-...+|+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 49999999999999999999888888889999999999999999999654 23 45777888899999999999999999
Q ss_pred CChhHHHHhhhcccCCCCcceEEE
Q psy9620 379 NNSEDYIHRIGRTGRSDNTGTSYT 402 (453)
Q Consensus 379 ~s~~~y~qr~GRagR~g~~g~~~~ 402 (453)
+++..--|-+-|+-|-|+.-.+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999888876644433
No 305
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=88.12 E-value=0.79 Score=46.62 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHhcC-C-cEEEEecCCCcchhhhhHHHHHHh
Q psy9620 136 PTPIQAQGWPIAMSG-S-NMVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~g-~-d~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
+.+-|.+.+..+... + -+++++|||||||.+. ..++..+
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 356677777666543 3 3679999999999653 3344443
No 306
>PRK04328 hypothetical protein; Provisional
Probab=88.05 E-value=0.8 Score=42.21 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=35.4
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|..+++.+++|+|||...+--+...+.. +-.+++++ +.+-..++.+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 46788999999999996544333333322 33467766 5566777777777775
No 307
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=87.94 E-value=0.67 Score=41.05 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=15.6
Q ss_pred EEEEecCCCcchhhhhHHHHHHh
Q psy9620 153 MVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
+++++|||||||... ..++..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 688999999999763 3344443
No 308
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=87.92 E-value=1.5 Score=50.61 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
.+++-|.+|+..++.. +-++|++..|+|||.+.- .++..+.... ...+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~---e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFR-AVMSAVNMLP---ESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHH-HHHHHHHHHh---hccCceEEEEechHHHHHHHH
Confidence 6899999999999854 678899999999996531 1222221110 113567889999988776653
No 309
>PF12846 AAA_10: AAA-like domain
Probab=87.75 E-value=0.72 Score=43.50 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=29.2
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ 200 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~ 200 (453)
+.+++++|+||+|||.+.. .++..+.. .+..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHHH
Confidence 3578999999999997765 34433333 3556788867655544
No 310
>PRK08727 hypothetical protein; Validated
Probab=87.65 E-value=4.3 Score=36.94 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=29.7
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..+++++++|+|||...... ...+.. .+.+++++ |..++...+.+.+..+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~-~~~~~~-------~~~~~~y~-~~~~~~~~~~~~~~~l 91 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALAL-CAAAEQ-------AGRSSAYL-PLQAAAGRLRDALEAL 91 (233)
T ss_pred CeEEEECCCCCCHHHHHHHH-HHHHHH-------cCCcEEEE-eHHHhhhhHHHHHHHH
Confidence 34899999999999543322 222222 24456665 4556665555555555
No 311
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=87.63 E-value=0.74 Score=43.95 Aligned_cols=20 Identities=40% Similarity=0.388 Sum_probs=17.1
Q ss_pred HhcCCcEEEEecCCCcchhh
Q psy9620 147 AMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~ 166 (453)
+..+.+++++++||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 44688999999999999964
No 312
>PRK12678 transcription termination factor Rho; Provisional
Probab=87.16 E-value=3.9 Score=42.03 Aligned_cols=87 Identities=11% Similarity=0.183 Sum_probs=46.7
Q ss_pred HHHHHHh-cCCCcEEEEeccCccCCCCCCCcEEEEcC----CCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHH
Q psy9620 341 YVLKEFR-NGRAGILVATDVAARGLDVDDVKFVINFD----YPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDL 415 (453)
Q Consensus 341 ~~~~~f~-~g~~~vLvaT~~~~~GiDip~v~~VI~~d----~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l 415 (453)
.|++.|+ .+.-.|++...++.+|+ +|.|++..-.. .-.+.+. ++.+.+.=|. +. .-+....+..|
T Consensus 575 ~Ifeefkgtgn~elvLsR~LAerri-fPAIDv~~S~SR~ee~l~~~~e-~~~~~~lRr~------l~--~~~~~~a~e~l 644 (672)
T PRK12678 575 VIFEEFKGTGNMELKLDRKLADKRI-FPAVDVNASGTRKEELLLSPDE-LAIVHKLRRV------LS--GLDSQQAIDLL 644 (672)
T ss_pred chHHHHhhccCceeeECHHHHhCCC-CCccCCCcCccccchhhCCHHH-HHHHHHHHHH------HH--cCCHHHHHHHH
Confidence 3777787 46677888888999886 67776433211 1111222 2222221111 11 12334566777
Q ss_pred HHHHHhcCCCCChHHHHHHhhcC
Q psy9620 416 IDVLTESNHPVDPKLSALASRSG 438 (453)
Q Consensus 416 ~~~l~~~~~~v~~~l~~~~~~~~ 438 (453)
++.|++.... .++|..|.....
T Consensus 645 ~~~l~~t~~N-~efl~~~~~~~~ 666 (672)
T PRK12678 645 ISRLKKTKSN-YEFLMQVSKTTP 666 (672)
T ss_pred HHHHhcCCCH-HHHHHHHHhhCC
Confidence 7777765543 566777765544
No 313
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=87.14 E-value=4.8 Score=34.05 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=56.2
Q ss_pred HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHH-HHHHHHHHHhcCCCcEEEEecc-----
Q psy9620 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQ-ERDYVLKEFRNGRAGILVATDV----- 359 (453)
Q Consensus 290 ~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~-~r~~~~~~f~~g~~~vLvaT~~----- 359 (453)
.++..+...+..++||.++++..++.+.+.+... +..+..+|++.+.. +....+ .+..+|+|+|..
T Consensus 34 ~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~ 109 (169)
T PF00270_consen 34 PALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDL 109 (169)
T ss_dssp HHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHH
T ss_pred HHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhcc
Confidence 4454454444459999999999999999888765 35788889988744 322333 678999999963
Q ss_pred C-ccCCCCCCCcEEEE
Q psy9620 360 A-ARGLDVDDVKFVIN 374 (453)
Q Consensus 360 ~-~~GiDip~v~~VI~ 374 (453)
+ ...+++..+.+||.
T Consensus 110 ~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 110 ISNGKINISRLSLIVI 125 (169)
T ss_dssp HHTTSSTGTTESEEEE
T ss_pred ccccccccccceeecc
Confidence 1 12346777777664
No 314
>PRK09183 transposase/IS protein; Provisional
Probab=87.08 E-value=1.2 Score=41.31 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=28.9
Q ss_pred HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
+..+.++++.+|+|+|||........... . .+..++++ +..+|..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~-------~G~~v~~~-~~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-R-------AGIKVRFT-TAADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-H-------cCCeEEEE-eHHHHHHHH
Confidence 44688999999999999965443322222 1 24456655 444555544
No 315
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=86.99 E-value=3.5 Score=41.27 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=51.0
Q ss_pred CcEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----C-ccCCCCCCCc
Q psy9620 301 NKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----A-ARGLDVDDVK 370 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~GiDip~v~ 370 (453)
.++||.+++++-|.++++.+.. .++.+..++|+.+.......+ ....+|||+|.- + ...+++.++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL----ESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 5799999999999998776654 367888899987765543333 245789999972 2 2347788888
Q ss_pred EEEE
Q psy9620 371 FVIN 374 (453)
Q Consensus 371 ~VI~ 374 (453)
+||.
T Consensus 160 ~lVi 163 (423)
T PRK04837 160 VVVL 163 (423)
T ss_pred EEEE
Confidence 8774
No 316
>PRK12377 putative replication protein; Provisional
Probab=86.90 E-value=1.7 Score=39.89 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=28.0
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
..++++.+++|+|||..... +...+.. .+..|+ .++..+|..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~-------~g~~v~-~i~~~~l~~~l~~~ 147 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLA-------KGRSVI-VVTVPDVMSRLHES 147 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH-------cCCCeE-EEEHHHHHHHHHHH
Confidence 35799999999999955332 2333332 233344 44556776665543
No 317
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=86.35 E-value=0.7 Score=42.96 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=21.1
Q ss_pred HHHHHHhcCCcEEEEecCCCcchhhhh
Q psy9620 142 QGWPIAMSGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 142 ~~i~~i~~g~d~li~a~TGsGKT~~~~ 168 (453)
.++..+..++++++.+|+|+|||..+.
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 334455578999999999999997653
No 318
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=86.19 E-value=1.8 Score=45.23 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=40.7
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH--HHHHHHHHHHHHhcCCC
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR--ELAQQIQEVARDFGSST 213 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr--~La~q~~~~~~~~~~~~ 213 (453)
..+++|.++||+|||....+.+.+.+.. +..++++=|-. +|...+...++..+...
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~--------g~~vi~fDpkgD~el~~~~~~~~~~~GR~~ 237 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR--------GDVVIVFDPKGDADLLKRMYAEAKRAGRLD 237 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCCCCHHHHHHHHHHHHHhCCCC
Confidence 4678999999999998877665555532 44577777765 56777777888776543
No 319
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=86.16 E-value=1.9 Score=45.43 Aligned_cols=55 Identities=25% Similarity=0.389 Sum_probs=38.1
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH--HHHHHHHHHHHhcCC
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE--LAQQIQEVARDFGSS 212 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~--La~q~~~~~~~~~~~ 212 (453)
..++++.|+||+|||..+.+.+.+.+.. +..++|+=|--. |...+...++..+..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~--------g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR--------GDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 4689999999999998765544444432 344666667644 777777777777644
No 320
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=86.05 E-value=1.3 Score=40.19 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=34.1
Q ss_pred hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..+.-+++.+++|+|||...+-.+.. +.. .+.++++++ +.+-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~-------~g~~~~yi~-~e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQ-------NGYSVSYVS-TQLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHh-------CCCcEEEEe-CCCCHHHHHHHHHHhC
Confidence 45778899999999999664332322 221 234578877 4444566666666654
No 321
>PRK07952 DNA replication protein DnaC; Validated
Probab=85.92 E-value=2.4 Score=38.85 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=25.4
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
..+++.+++|+|||.... .+...+.. .+..++++ +..+|...+
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~-------~g~~v~~i-t~~~l~~~l 142 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL-------RGKSVLII-TVADIMSAM 142 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh-------cCCeEEEE-EHHHHHHHH
Confidence 478999999999996543 23333332 23446555 444444443
No 322
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=85.89 E-value=1.2 Score=40.25 Aligned_cols=53 Identities=26% Similarity=0.357 Sum_probs=32.6
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|..+++.+++|+|||...+..+...+. .+..+++++- .+...++.+.+..++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~--------~g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR--------DGDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh--------cCCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 4678899999999999654433333332 1334666653 445566666666553
No 323
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=85.80 E-value=0.53 Score=38.23 Aligned_cols=18 Identities=39% Similarity=0.457 Sum_probs=15.2
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+..+++.+|+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 467899999999999654
No 324
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=85.72 E-value=1.7 Score=40.30 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=24.3
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
.|.-+++.+++|+|||...+--+...+. .+-++++++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~--------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS--------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--------CCCcEEEEE
Confidence 4677899999999999654433333222 234577776
No 325
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=85.68 E-value=2.8 Score=34.15 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=15.1
Q ss_pred CCcEEEEecCCCcchhh
Q psy9620 150 GSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~ 166 (453)
++.+++.+|+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999954
No 326
>PHA02244 ATPase-like protein
Probab=85.46 E-value=0.8 Score=44.36 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=18.2
Q ss_pred HHhcCCcEEEEecCCCcchhhh
Q psy9620 146 IAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 146 ~i~~g~d~li~a~TGsGKT~~~ 167 (453)
.+..+.++++.+|||+|||...
T Consensus 115 ~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 115 IVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHhcCCCEEEECCCCCCHHHHH
Confidence 3446889999999999999654
No 327
>PRK09401 reverse gyrase; Reviewed
Probab=85.43 E-value=3.4 Score=46.86 Aligned_cols=75 Identities=21% Similarity=0.385 Sum_probs=55.4
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc----CCeEE--EEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-Cc---cCCCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY----GWAAV--GIHGDKSQQERDYVLKEFRNGRAGILVATDV-AA---RGLDVDD 368 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~--~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~---~GiDip~ 368 (453)
...++||.+||+.-+.++++.|... +..+. ..|+.++..++....+.+..+..+|+|+|.- +. ..+....
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~ 201 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKK 201 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 3578999999999999999998865 33333 3466677788888899999999999999952 11 1344444
Q ss_pred CcEEE
Q psy9620 369 VKFVI 373 (453)
Q Consensus 369 v~~VI 373 (453)
+++||
T Consensus 202 ~~~lV 206 (1176)
T PRK09401 202 FDFVF 206 (1176)
T ss_pred cCEEE
Confidence 66665
No 328
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=85.39 E-value=0.89 Score=50.09 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHh-----cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 134 DRPTPIQAQGWPIAM-----SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~-----~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
..+.++|.+.+..+. .+.+.++....|.|||+..+..+.. +..... ...+.+||+||+ +++.++.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~~---~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIK---VYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhccc---CCCCCeEEEecH-HHHHHHHHHHhh
Confidence 467888999887644 2667788899999999775444433 222211 114569999998 556777777777
Q ss_pred hcCC
Q psy9620 209 FGSS 212 (453)
Q Consensus 209 ~~~~ 212 (453)
+...
T Consensus 412 ~~~~ 415 (866)
T COG0553 412 FAPD 415 (866)
T ss_pred hCcc
Confidence 7543
No 329
>PHA02533 17 large terminase protein; Provisional
Probab=85.34 E-value=4.1 Score=41.99 Aligned_cols=69 Identities=13% Similarity=0.037 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.|.|+|...+..+..++-.++..+=..|||.+....++..+... .+..+++++|++.-|..+.+.++.+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 68899999998876566667888888999987665444333322 3558999999999999888777654
No 330
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=85.25 E-value=0.71 Score=46.01 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=31.0
Q ss_pred HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHH
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQ 201 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q 201 (453)
-...+++++.|+||||||.+ +..++..+... +..+||+=|..++...
T Consensus 39 ~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~-------~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 39 DAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR-------GDRAIIYDPNGGFVSK 85 (410)
T ss_pred chhhccEEEEcCCCCCHHHH-HHHHHHHHHhc-------CCCEEEEeCCcchhHh
Confidence 34567999999999999975 33344443332 3347777787776543
No 331
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=85.09 E-value=0.98 Score=44.62 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=31.7
Q ss_pred HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
-...+++++.+.||||||. ++..++..+... +-++||.=|.-+.....+
T Consensus 12 ~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~-------g~~~iI~D~kg~~~~~f~ 60 (386)
T PF10412_consen 12 DSENRHILIIGATGSGKTQ-AIRHLLDQIRAR-------GDRAIIYDPKGEFTERFY 60 (386)
T ss_dssp GGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT-------T-EEEEEEETTHHHHHH-
T ss_pred chhhCcEEEECCCCCCHHH-HHHHHHHHHHHc-------CCEEEEEECCchHHHHhc
Confidence 3457899999999999996 456666666553 445777777766654433
No 332
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=85.05 E-value=2.4 Score=50.58 Aligned_cols=63 Identities=25% Similarity=0.266 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhh---HHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 134 DRPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYM---LPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~---l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
..+++.|.+|+..++.+ +-++|++..|+|||.... -++...+.. .+..++.++||-.-+.++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHHH
Confidence 37899999999998865 456788999999996541 122222221 3567999999988776664
No 333
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.70 E-value=2.8 Score=41.25 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.2
Q ss_pred CcEEEEecCCCcchhhhh
Q psy9620 151 SNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~ 168 (453)
+.+++++|||+|||.+..
T Consensus 175 ~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIA 192 (388)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998754
No 334
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=84.10 E-value=3.5 Score=40.58 Aligned_cols=90 Identities=18% Similarity=0.149 Sum_probs=46.6
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH-------HHHHHHHHHHHHhcCCCCceEEEEe-
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR-------ELAQQIQEVARDFGSSTYLRSTCVY- 221 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr-------~La~q~~~~~~~~~~~~~~~~~~~~- 221 (453)
...+++.|++|+|||-......- .+... ...++++++.... ++-..-.+.|++.. .+...++-
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign-~~~~~-----~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y---~~dlllIDD 183 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGN-EALAN-----GPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY---SLDLLLIDD 183 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH-HHHhh-----CCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh---ccCeeeech
Confidence 45689999999999954322222 22221 1344677766544 22222333444442 23333221
Q ss_pred ----CCccCCCC-----------CCceEEEEeccCcHHHHHH
Q psy9620 222 ----GGASKGPQ-----------PDRQVLMWSATWPREVQKL 248 (453)
Q Consensus 222 ----gg~~~~~~-----------~~~q~v~~SAT~~~~~~~~ 248 (453)
.+...... ...|+|+.|..+|.++..+
T Consensus 184 iq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 184 IQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred HhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 11111111 4559999998888776543
No 335
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=84.06 E-value=3.1 Score=48.70 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
.+++.|.+|+..++.. +-++|++..|+|||... -.++..+.... ...+..++.++||---+..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~---~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLP---ESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhh---cccCceEEEECCcHHHHHHHH
Confidence 6899999999999875 56789999999999653 22233222111 113566889999987776654
No 336
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=83.95 E-value=4.1 Score=42.93 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=54.5
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
.+.+||.+|++.-+.+..+.|...++.+..+++..+..++..+++....++.++|++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 45799999999999999999999999999999999999999999999999999999884
No 337
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=83.77 E-value=7.7 Score=37.51 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHhc--C---CcEEEEecCCCcchhhhhHH
Q psy9620 136 PTPIQAQGWPIAMS--G---SNMVGVAQTGSGKTLAYMLP 170 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~--g---~d~li~a~TGsGKT~~~~l~ 170 (453)
++|+|...|..+.. + +-+|+.+|.|.||+..+...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~ 41 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHL 41 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHH
Confidence 36888888887664 2 36789999999999765443
No 338
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=83.74 E-value=0.56 Score=43.80 Aligned_cols=54 Identities=22% Similarity=0.113 Sum_probs=31.7
Q ss_pred HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
+..|.-+++.|++|+|||...+..+...+.. .+..|++++-- +-..++...+..
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS~E-~~~~~~~~r~~~ 80 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTISLE-EPVVRTARRLLG 80 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEEcc-cCHHHHHHHHHH
Confidence 4567888999999999996544333332222 24457777532 234455544443
No 339
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=83.65 E-value=1.4 Score=40.14 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=22.8
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
.++++|++|||||. +++-++..+.+. -..+++++|.
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~~-------f~~I~l~t~~ 50 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRHK-------FDHIFLITPE 50 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhccc-------CCEEEEEecC
Confidence 78999999999995 444455443331 1335566663
No 340
>PTZ00110 helicase; Provisional
Probab=83.63 E-value=5 Score=41.66 Aligned_cols=71 Identities=15% Similarity=0.278 Sum_probs=50.7
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCccC-CCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAARG-LDVDDV 369 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-iDip~v 369 (453)
...+||.++|++-|.++.+.+... ++.+..++++.+.......+ +. ...|||+|+ .+..+ +++..+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l---~~-~~~IlVaTPgrL~d~l~~~~~~l~~v 278 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL---RR-GVEILIACPGRLIDFLESNVTNLRRV 278 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH---Hc-CCCEEEECHHHHHHHHHcCCCChhhC
Confidence 346899999999999988888764 46677788887765544333 33 478999996 34433 567788
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
++||.
T Consensus 279 ~~lVi 283 (545)
T PTZ00110 279 TYLVL 283 (545)
T ss_pred cEEEe
Confidence 87663
No 341
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=83.62 E-value=22 Score=38.23 Aligned_cols=22 Identities=36% Similarity=0.336 Sum_probs=16.3
Q ss_pred CCcEEEEecCCCcchhhhhHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~ 171 (453)
++-+++++|||+|||.+....+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3457799999999997754433
No 342
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=83.60 E-value=7.9 Score=37.38 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHh----cC---CcEEEEecCCCcchhhhhHHHHHHhhhcCC-------------CCCCCCcEEEEEcC
Q psy9620 135 RPTPIQAQGWPIAM----SG---SNMVGVAQTGSGKTLAYMLPAIVHINHQSQ-------------LKPGDGPIVLVLAP 194 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~----~g---~d~li~a~TGsGKT~~~~l~~l~~~~~~~~-------------~~~~~~~~vlil~P 194 (453)
..+|+|..+|..+. ++ +-.|+.+|.|.||+..+..-+-..+...+. ...+..|.+.++.|
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 35788888888765 33 357899999999997654332222221211 11245688888988
Q ss_pred CH----HHHHHHHHHHHHhc---CCCCceEEEEeCCc
Q psy9620 195 TR----ELAQQIQEVARDFG---SSTYLRSTCVYGGA 224 (453)
Q Consensus 195 tr----~La~q~~~~~~~~~---~~~~~~~~~~~gg~ 224 (453)
.. .-++|+.+..+.+. ...+.+++.+....
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae 118 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAA 118 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchH
Confidence 64 34667666555543 22345555554433
No 343
>KOG0745|consensus
Probab=83.59 E-value=1.3 Score=43.40 Aligned_cols=38 Identities=32% Similarity=0.382 Sum_probs=25.1
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR 196 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr 196 (453)
+..|+|+.+|||||||+.+. -|..+. +-|.+|.=|-|-
T Consensus 225 eKSNvLllGPtGsGKTllaq--TLAr~l--------dVPfaIcDcTtL 262 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQ--TLARVL--------DVPFAICDCTTL 262 (564)
T ss_pred ecccEEEECCCCCchhHHHH--HHHHHh--------CCCeEEecccch
Confidence 45689999999999997543 344443 345566655553
No 344
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=83.59 E-value=0.7 Score=32.22 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.6
Q ss_pred CCcEEEEecCCCcchhh
Q psy9620 150 GSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~ 166 (453)
+...++.+++|+|||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45789999999999965
No 345
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=83.33 E-value=11 Score=36.06 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHh----cC---CcEEEEecCCCcchhhhhHHHHHHhhhcCC------------CCCCCCcEEEEEcCC
Q psy9620 135 RPTPIQAQGWPIAM----SG---SNMVGVAQTGSGKTLAYMLPAIVHINHQSQ------------LKPGDGPIVLVLAPT 195 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~----~g---~d~li~a~TGsGKT~~~~l~~l~~~~~~~~------------~~~~~~~~vlil~Pt 195 (453)
.++|+|...|..+. ++ +-+++++|.|.||+..+...+-..+..... ...+..|...++.|.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPE 82 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecC
Confidence 46788888887665 33 368999999999996654333222222211 112456888889886
Q ss_pred H----HHHHHHHHHHHHhc---CCCCceEEEEeCCc
Q psy9620 196 R----ELAQQIQEVARDFG---SSTYLRSTCVYGGA 224 (453)
Q Consensus 196 r----~La~q~~~~~~~~~---~~~~~~~~~~~gg~ 224 (453)
. .-++|+.+....+. ...+.++..+....
T Consensus 83 ~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae 118 (319)
T PRK06090 83 KEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPAD 118 (319)
T ss_pred cCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchh
Confidence 3 23556654333221 22345666655443
No 346
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=83.17 E-value=1.8 Score=40.80 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=15.6
Q ss_pred CCcEEEEecCCCcchhhhhH
Q psy9620 150 GSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l 169 (453)
++.+++++|||+|||.+...
T Consensus 194 ~~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34678999999999976543
No 347
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=83.13 E-value=3.2 Score=44.24 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
.+++-|.+++... ...++|.|..|||||.+..--+...+.. ....+ ..+|.++=|+-.|.++.+.+.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~-~~v~p---~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAA-GGVDP---EQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHc-CCcCh---HHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999998776 6678999999999997754444333332 22222 2388899999999999999998864
No 348
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=82.90 E-value=23 Score=32.38 Aligned_cols=85 Identities=14% Similarity=0.217 Sum_probs=61.6
Q ss_pred CCCcEEEEEcc------------hhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc---CCCcEEEEeccCccC
Q psy9620 299 DENKTIIFAET------------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN---GRAGILVATDVAARG 363 (453)
Q Consensus 299 ~~~~~lVF~~s------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~---g~~~vLvaT~~~~~G 363 (453)
+.+.+||+.+. ..+++.|++.|+..++.|. ++.+++..+-.+++++|.+ .....+|+. +++.|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVE-VKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEE-EeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 34567777764 4679999999999999885 5778899999999999985 233444444 67888
Q ss_pred CCCCCCcEEEEcC-CCCChhHHHHhhh
Q psy9620 364 LDVDDVKFVINFD-YPNNSEDYIHRIG 389 (453)
Q Consensus 364 iDip~v~~VI~~d-~p~s~~~y~qr~G 389 (453)
.. +.|+-.| .+-++++.++...
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhc
Confidence 65 6677666 5556677766664
No 349
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.87 E-value=0.66 Score=43.36 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.8
Q ss_pred hcCCcEEEEecCCCcchhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~ 166 (453)
.+++.++++||+|+|||..
T Consensus 31 ~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HCTEEEEEESSTTSSHHHH
T ss_pred HcCCcEEEECCCCCchhHH
Confidence 3688999999999999964
No 350
>PRK05642 DNA replication initiation factor; Validated
Probab=82.65 E-value=5.9 Score=36.09 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=26.0
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
..++++|++|+|||.... .+...+.. .+.+++++. ..++......
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~-------~~~~v~y~~-~~~~~~~~~~ 90 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQ-------RGEPAVYLP-LAELLDRGPE 90 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh-------CCCcEEEee-HHHHHhhhHH
Confidence 467899999999995522 22222222 234466654 4566554333
No 351
>KOG1806|consensus
Probab=82.59 E-value=2.6 Score=45.54 Aligned_cols=72 Identities=19% Similarity=0.185 Sum_probs=54.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
++-.++|-|-+++..-..-.++.+.+|+|+|||-...- ++..+.+.. ..++++|++....-.+|..+.+.++
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-il~~lyhn~-----p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYHNS-----PNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-hhhhhhhcC-----CCcceEEEEecccchhHHHHHHHhc
Confidence 34567999999998888888999999999999976532 344444432 4678999999988888877766654
No 352
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=82.44 E-value=2.5 Score=47.88 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=42.4
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
.+.+++|.|..|||||.+...-++..+.... +-.-..+|||+-|+.-+..+...+..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~---~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG---PLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC---CCChhHeeeeeccHHHHHHHHHHHHH
Confidence 5779999999999999886666666555532 11233599999999999988776654
No 353
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=82.26 E-value=2 Score=43.89 Aligned_cols=56 Identities=27% Similarity=0.230 Sum_probs=38.1
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
.|+.+++.+++|+|||+..+--+...+.+ .+-.+|+++- .|-..++.+.+..++..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-------~ge~~lyvs~-eE~~~~l~~~~~~~G~~ 75 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-------FDEPGVFVTF-EESPQDIIKNARSFGWD 75 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEEEE-ecCHHHHHHHHHHcCCC
Confidence 46789999999999997654444443332 1234777764 47777888888887643
No 354
>PF05729 NACHT: NACHT domain
Probab=82.23 E-value=20 Score=29.94 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=24.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHH
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEF 346 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 346 (453)
.-+++|.|.+...-+ +...+... ....+. .++..+..+.++++
T Consensus 120 ~~~liit~r~~~~~~-~~~~~~~~--~~~~l~-~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 120 GVKLIITSRPRAFPD-LRRRLKQA--QILELE-PFSEEDIKQYLRKY 162 (166)
T ss_pred CCeEEEEEcCChHHH-HHHhcCCC--cEEEEC-CCCHHHHHHHHHHH
Confidence 457777776655444 55555443 344454 46777776666554
No 355
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=82.15 E-value=1.6 Score=43.31 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=53.0
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 123 YVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 123 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
.+++.++.. +..+...|.++.-..-.|.. .|.+-.|||||...++-+.. +... ...-+++|.+=|+.|+.++
T Consensus 151 a~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~-lh~k-----nPd~~I~~Tfftk~L~s~~ 222 (660)
T COG3972 151 ALLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE-LHSK-----NPDSRIAFTFFTKILASTM 222 (660)
T ss_pred HHHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH-HhcC-----CCCceEEEEeehHHHHHHH
Confidence 344444432 45667778777655555655 67888999999764333322 2211 2355799999999999999
Q ss_pred HHHHHHhc
Q psy9620 203 QEVARDFG 210 (453)
Q Consensus 203 ~~~~~~~~ 210 (453)
...+.+|+
T Consensus 223 r~lv~~F~ 230 (660)
T COG3972 223 RTLVPEFF 230 (660)
T ss_pred HHHHHHHH
Confidence 99888875
No 356
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=82.08 E-value=5.7 Score=42.92 Aligned_cols=83 Identities=17% Similarity=0.341 Sum_probs=57.9
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cCcc
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-VAAR 362 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~ 362 (453)
.++.++..+......++|+.+|+++-+.+....|... ++.+..++|+.+..+|..+ + ...+|||+|+ .+..
T Consensus 68 ~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~-~~~~IivtTPd~L~~ 142 (742)
T TIGR03817 68 YQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA----R-EHARYVLTNPDMLHR 142 (742)
T ss_pred HHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH----h-cCCCEEEEChHHHHH
Confidence 3444555554444568999999999999999988865 5678889999998776433 2 2478999995 3332
Q ss_pred CC---------CCCCCcEEEE
Q psy9620 363 GL---------DVDDVKFVIN 374 (453)
Q Consensus 363 Gi---------Dip~v~~VI~ 374 (453)
++ .+.++++||.
T Consensus 143 ~~L~~~~~~~~~l~~l~~vVi 163 (742)
T TIGR03817 143 GILPSHARWARFLRRLRYVVI 163 (742)
T ss_pred hhccchhHHHHHHhcCCEEEE
Confidence 21 1567787774
No 357
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=82.04 E-value=1.1 Score=39.75 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=13.8
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.++++++.+|.|+|||+.+
T Consensus 21 G~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp CC--EEEES-CCCTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 5789999999999999653
No 358
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.91 E-value=2.4 Score=42.10 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=15.9
Q ss_pred CCcEEEEecCCCcchhhhhH
Q psy9620 150 GSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l 169 (453)
++-+.+++|||+|||.+...
T Consensus 191 g~vi~lvGpnG~GKTTtlak 210 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAK 210 (420)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45578999999999977543
No 359
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=81.60 E-value=2.2 Score=39.51 Aligned_cols=55 Identities=29% Similarity=0.350 Sum_probs=36.3
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
.|+.+++.+++|||||+-.+-.+...+.. +-.++++ -+.+...++.+.+..++..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--------ge~vlyv-s~~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--------GEPVLYV-STEESPEELLENARSFGWD 76 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--------CCcEEEE-EecCCHHHHHHHHHHcCCC
Confidence 57889999999999995433333322222 2335554 5667788888888887543
No 360
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=81.55 E-value=2 Score=43.82 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=36.7
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
|.-+++.+|+|+|||+..+--+...+. .+-++++++ .-|-..|+...+..++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~--------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACA--------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 457899999999999754433333322 244578776 6777889988888875
No 361
>PRK14974 cell division protein FtsY; Provisional
Probab=81.47 E-value=7.5 Score=37.48 Aligned_cols=50 Identities=28% Similarity=0.300 Sum_probs=27.4
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc-CC--HHHHHHHHHHHHHh
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA-PT--RELAQQIQEVARDF 209 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~-Pt--r~La~q~~~~~~~~ 209 (453)
-+++++++|+|||.+..-.+ ..+.. .+.+++++. .| .....|+......+
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~-------~g~~V~li~~Dt~R~~a~eqL~~~a~~l 194 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK-------NGFSVVIAAGDTFRAGAIEQLEEHAERL 194 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH-------cCCeEEEecCCcCcHHHHHHHHHHHHHc
Confidence 47789999999997643322 22322 233455554 32 34445555545444
No 362
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=81.43 E-value=5.4 Score=44.45 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=53.0
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc--CCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN--GRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vLvaT~ 358 (453)
.+.+||.+|++.-+.+-...|...++.+..++++++..++..++..+.. +..+||++|+
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 4589999999999987777777889999999999999999999999887 8999999997
No 363
>PRK13766 Hef nuclease; Provisional
Probab=81.31 E-value=10 Score=41.25 Aligned_cols=72 Identities=26% Similarity=0.389 Sum_probs=53.4
Q ss_pred CCCCcEEEEEcchhHHHHHHHHHHhc-CC---eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc------CccCCCCC
Q psy9620 298 KDENKTIIFAETKRKVDKITKSIQNY-GW---AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV------AARGLDVD 367 (453)
Q Consensus 298 ~~~~~~lVF~~s~~~~~~l~~~L~~~-~~---~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~GiDip 367 (453)
...+++||.|+++..+++.++.+... +. .+..++|+.+..+|..+.. ..+|+|+|.- +..-+++.
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~~ 130 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRISLE 130 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCChh
Confidence 34679999999999998888887754 33 7888999999888765543 3579999962 23346677
Q ss_pred CCcEEEE
Q psy9620 368 DVKFVIN 374 (453)
Q Consensus 368 ~v~~VI~ 374 (453)
++++||.
T Consensus 131 ~~~liVv 137 (773)
T PRK13766 131 DVSLLIF 137 (773)
T ss_pred hCcEEEE
Confidence 7887774
No 364
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=81.06 E-value=37 Score=35.58 Aligned_cols=60 Identities=15% Similarity=0.349 Sum_probs=30.8
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcch--hHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHh
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETK--RKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFR 347 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~--~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~ 347 (453)
..|..+++.+... ++-||++..+ .+...+-..|... .+...+-=...+.+.|..+++...
T Consensus 397 eeLF~l~N~l~e~--gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 397 EEFFHTFNTLHNA--NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred HHHHHHHHHHHhc--CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 4566777766533 3445555544 2333333334332 333333333457788888888754
No 365
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.18 E-value=1 Score=37.78 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=25.3
Q ss_pred EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 153 MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
.|+.+|.|||||..|.......+ + .++++.+-++|.|+
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~-----------~-~~~~VN~D~iA~~i 42 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLL-----------P-GIVFVNADEIAAQI 42 (187)
T ss_pred EEEecCCCCCceeeeeccchhhc-----------C-CeEEECHHHHhhhc
Confidence 36779999999988865443211 1 45666777777664
No 366
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=79.66 E-value=1.2 Score=36.64 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=13.6
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
++++.+|+|+|||...
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4799999999999653
No 367
>KOG0060|consensus
Probab=79.55 E-value=1.2 Score=45.12 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=17.5
Q ss_pred HhcCCcEEEEecCCCcchhh
Q psy9620 147 AMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~ 166 (453)
+.+|++++|++|+|||||-.
T Consensus 458 V~~g~~LLItG~sG~GKtSL 477 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSL 477 (659)
T ss_pred ecCCCeEEEECCCCCchhHH
Confidence 45799999999999999943
No 368
>KOG0733|consensus
Probab=79.45 E-value=3.2 Score=42.56 Aligned_cols=61 Identities=21% Similarity=0.143 Sum_probs=36.4
Q ss_pred ccCCCccccccccCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 106 GNAPNPITEFAEANFPDYVLKEVKRQ-GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 106 ~~~p~p~~~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
|.+..|-.+|.+.+--+.+...|... -+.--+|-+-+++-.- .-.-+|+++|.|||||+.+
T Consensus 501 GF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~-~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID-APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred cceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC-CCCceEEeCCCCccHHHHH
Confidence 33556667899988766666666543 1111222232332211 2456899999999999654
No 369
>KOG0330|consensus
Probab=79.41 E-value=9.8 Score=36.83 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=57.5
Q ss_pred hHHHHHHhhhcCC-CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC-
Q psy9620 287 KLFGLLNDISSKD-ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA- 360 (453)
Q Consensus 287 ~l~~ll~~~~~~~-~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~- 360 (453)
.++-++..+...+ ...++|.++|++-|.++++.+... |+.+..+-|+++...+...+ ..+..|||||.=.
T Consensus 115 faLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L----~kkPhilVaTPGrL 190 (476)
T KOG0330|consen 115 FALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQL----SKKPHILVATPGRL 190 (476)
T ss_pred hHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHh----hcCCCEEEeCcHHH
Confidence 3444455443332 347999999999999999998875 67888899998754433322 2367789999731
Q ss_pred ------ccCCCCCCCcEEE
Q psy9620 361 ------ARGLDVDDVKFVI 373 (453)
Q Consensus 361 ------~~GiDip~v~~VI 373 (453)
..|+.+..+++.|
T Consensus 191 ~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 191 WDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred HHHHHhccCccHHHhHHHh
Confidence 3677777777655
No 370
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=79.37 E-value=2.8 Score=37.78 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=33.7
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.+.-+++.+++|+|||...+--+...+. .+-.+++++- .+-..++.+.+..++
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~--------~g~~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK--------NGEKAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--------CCCeEEEEEC-CCCHHHHHHHHHHcC
Confidence 3567889999999998644333333332 2334777654 455777777777764
No 371
>PRK04296 thymidine kinase; Provisional
Probab=79.30 E-value=2.1 Score=37.56 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=23.1
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcC
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAP 194 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 194 (453)
.-.++++|+|+|||...+-. +..+.. .+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~-~~~~~~-------~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQR-AYNYEE-------RGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHH-HHHHHH-------cCCeEEEEec
Confidence 34688999999999665433 333322 2456888766
No 372
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=79.20 E-value=24 Score=32.30 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=53.2
Q ss_pred CCCcEEEEEcc-----------hhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC----CCcEEEEeccCccC
Q psy9620 299 DENKTIIFAET-----------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG----RAGILVATDVAARG 363 (453)
Q Consensus 299 ~~~~~lVF~~s-----------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g----~~~vLvaT~~~~~G 363 (453)
+.+-+||+.+. ..+++.|++.|+..++.|. ++-+++..+-.+++++|... ..+++|+. +++.|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 45567888876 3589999999999999885 57779999999999999763 34555555 67777
Q ss_pred CCCCCCcEEEEcC
Q psy9620 364 LDVDDVKFVINFD 376 (453)
Q Consensus 364 iDip~v~~VI~~d 376 (453)
. .+.|+-.|
T Consensus 85 ~----~~~l~~~D 93 (241)
T smart00115 85 E----EGGIYGTD 93 (241)
T ss_pred C----CCeEEEec
Confidence 3 25555444
No 373
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=79.17 E-value=5 Score=35.02 Aligned_cols=61 Identities=23% Similarity=0.161 Sum_probs=32.9
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCC--CCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQL--KPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~--~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|.-+++.|++|+|||...+-.+...+...+-. ......+||++..-.. ..++.+.+..+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 566789999999999966444333333211110 0113456777765544 567777777664
No 374
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=79.14 E-value=4.3 Score=46.26 Aligned_cols=55 Identities=24% Similarity=0.192 Sum_probs=39.9
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
-.++++|.|.-|||||.+..--++..+.... ..-.+|+|+-|+.-|..|.+.+..
T Consensus 9 p~~~~~~~a~agsgkt~~l~~~~~~~~~~~~-----~~~~i~~~t~t~~aa~em~~Ri~~ 63 (1141)
T TIGR02784 9 PKTSAWVSANAGSGKTHVLTQRVIRLLLNGV-----PPSKILCLTYTKAAAAEMQNRVFD 63 (1141)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHcCC-----CCCeEEEEecCHHHHHHHHHHHHH
Confidence 3578999999999999776555554444321 223699999999999988765554
No 375
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=78.96 E-value=16 Score=36.48 Aligned_cols=17 Identities=35% Similarity=0.360 Sum_probs=13.7
Q ss_pred cEEEEecCCCcchhhhh
Q psy9620 152 NMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~ 168 (453)
-+++++++|+|||.+..
T Consensus 102 vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCT 118 (429)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999997643
No 376
>KOG1807|consensus
Probab=78.62 E-value=4.5 Score=42.47 Aligned_cols=71 Identities=15% Similarity=-0.001 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
.+..-|+.|....+..+=-|+++|.|+|||++-+.. +..+......-.... .+|++|-|..-..|....+.
T Consensus 378 ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlka-v~tLL~n~s~~~~~e-pIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKA-VDTLLLNSSGYTEPE-PILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred eecHHHHHHHHHHhhhhhheeecCCCCCceeehHHH-HHHHHhccccccccc-ceeeeehhhHHHHHHHHHHH
Confidence 355669999999999998999999999999886554 444443321111112 27888888888888665544
No 377
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=78.54 E-value=1.9 Score=42.94 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 136 PTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
+.......+..+..++++++++|+|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44455666777778999999999999999655
No 378
>KOG1533|consensus
Probab=78.51 E-value=2.1 Score=38.40 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=19.0
Q ss_pred EEEEecCCCcchhhhhHHHHHHhhhc
Q psy9620 153 MVGVAQTGSGKTLAYMLPAIVHINHQ 178 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l~~l~~~~~~ 178 (453)
-++++|+||||| +|..-+.+.+.+.
T Consensus 5 qvVIGPPgSGKs-TYc~g~~~fls~~ 29 (290)
T KOG1533|consen 5 QVVIGPPGSGKS-TYCNGMSQFLSAI 29 (290)
T ss_pred eEEEcCCCCCcc-chhhhHHHHHHHh
Confidence 378999999999 5777776665543
No 379
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=78.49 E-value=3.4 Score=36.77 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=25.0
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
.|+-+.+.+++|+|||...+..+..... .+-.++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~--------~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR--------QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--------CCCeEEEEECC
Confidence 4567889999999999765443333222 23457776654
No 380
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=78.44 E-value=9.8 Score=38.42 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=27.0
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQE 204 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~ 204 (453)
..+++.|++|+|||... ..+...+.... .+.+++++.+ .++..++..
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~-----~~~~v~yv~~-~~f~~~~~~ 188 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF-----SDLKVSYMSG-DEFARKAVD 188 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC-----CCCeEEEEEH-HHHHHHHHH
Confidence 35889999999999432 23333333211 2445666654 555555443
No 381
>KOG0391|consensus
Probab=78.32 E-value=6.3 Score=43.53 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHh----cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPIAM----SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.++.+|...+..+. ++-|-|+.-.-|-|||+.. |.+|.|+.-... .=|| -||||||-.+. .|.-+++++|
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeeg---nWGP-HLIVVpTsviL-nWEMElKRwc 688 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEG---NWGP-HLIVVPTSVIL-NWEMELKRWC 688 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhccc---CCCC-ceEEeechhhh-hhhHHHhhhC
Confidence 46778988877643 3558899999999999764 455555543221 1133 58899997653 4677888887
Q ss_pred CCCCceEEEEeCCc
Q psy9620 211 SSTYLRSTCVYGGA 224 (453)
Q Consensus 211 ~~~~~~~~~~~gg~ 224 (453)
.++++...||..
T Consensus 689 --PglKILTYyGs~ 700 (1958)
T KOG0391|consen 689 --PGLKILTYYGSH 700 (1958)
T ss_pred --CcceEeeecCCH
Confidence 456777777754
No 382
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=78.22 E-value=5.4 Score=36.72 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=15.4
Q ss_pred hcCCcEEEEecCCCcchh
Q psy9620 148 MSGSNMVGVAQTGSGKTL 165 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~ 165 (453)
..|+-+.+.+|.|||||.
T Consensus 26 ~~G~i~~iiGpNG~GKST 43 (258)
T COG1120 26 PKGEITGILGPNGSGKST 43 (258)
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 357778899999999995
No 383
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=78.15 E-value=1.2 Score=36.02 Aligned_cols=20 Identities=35% Similarity=0.265 Sum_probs=12.7
Q ss_pred cCCcEEEEecCCCcchhhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~ 168 (453)
+++.+++.|++|+|||.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ----EEEEE-TTSSHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHH
Confidence 34568899999999997643
No 384
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=78.13 E-value=3.5 Score=36.56 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCcchhhhhHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAI 172 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l 172 (453)
...++++.+.||||||.+....++
T Consensus 37 ~~~h~li~G~tgsGKS~~l~~ll~ 60 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTLLRTLLL 60 (205)
T ss_dssp GS-SEEEE--TTSSHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCccHHHHHHHH
Confidence 344899999999999976544333
No 385
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=78.12 E-value=11 Score=33.28 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=35.2
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFR 347 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 347 (453)
.+..+|+.+..+-++.++|.......|...++.+-.....-++..|....--..+++++.=
T Consensus 173 ~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~eiy 233 (252)
T COG4604 173 QIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIY 233 (252)
T ss_pred HHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHHHHh
Confidence 3445555554444556777788899999888887554444444444333333444555543
No 386
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=77.99 E-value=2.6 Score=38.47 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=25.5
Q ss_pred hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcC
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAP 194 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 194 (453)
..|.-+++.|++|+|||...+--++..+.. .+..+++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-------~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK-------QGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCceEEEeC
Confidence 356778999999999996543333333322 1445788764
No 387
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=77.91 E-value=2.3 Score=44.90 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=41.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHH--hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 122 DYVLKEVKRQGFDRPTPIQAQGWPIA--MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 122 ~~l~~~l~~~g~~~~~~~Q~~~i~~i--~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
..+.+.+++.+-. .++.-.-+|.. .+.+++++++.||||||.+. .-+|..+... +-++||.=|+-+..
T Consensus 157 ~~l~k~lk~~~~~--s~i~I~gvPip~~~E~~H~li~GttGSGKS~~i-~~LL~~ir~R-------GdrAIIyD~~GeFv 226 (732)
T PRK13700 157 KDVARMLKKDGKD--SDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVI-RRLANYARQR-------GDMVVIYDRSGEFV 226 (732)
T ss_pred HHHHHHHHhcCCC--CCeeEccccCCcchhhcceEEeCCCCCCHHHHH-HHHHHHHHHc-------CCeEEEEeCCCchH
Confidence 5666777766432 33443445543 35789999999999999753 4455555432 33455555555554
Q ss_pred H
Q psy9620 200 Q 200 (453)
Q Consensus 200 ~ 200 (453)
.
T Consensus 227 ~ 227 (732)
T PRK13700 227 K 227 (732)
T ss_pred H
Confidence 4
No 388
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=77.75 E-value=3.1 Score=35.33 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCC-----CCCHHHHHHHHHHhcCCcEEEEecCCCcchh
Q psy9620 122 DYVLKEVKRQGFD-----RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTL 165 (453)
Q Consensus 122 ~~l~~~l~~~g~~-----~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~ 165 (453)
+.+++.+++.||. .-+..-.+.+...+.++-+++++++|.|||.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSS 50 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSS 50 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHH
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHH
Confidence 3566677777764 2244555666677788999999999999994
No 389
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=77.62 E-value=6.5 Score=38.31 Aligned_cols=19 Identities=32% Similarity=0.344 Sum_probs=15.9
Q ss_pred CcEEEEecCCCcchhhhhH
Q psy9620 151 SNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l 169 (453)
.++|+.+|.|+|||..+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 3789999999999976544
No 390
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=77.61 E-value=7.9 Score=31.95 Aligned_cols=117 Identities=11% Similarity=0.177 Sum_probs=58.8
Q ss_pred hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCC
Q psy9620 285 ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGL 364 (453)
Q Consensus 285 ~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 364 (453)
...+..++.+.... +.+++|+|++...++.|-+.|-...-....=|+-.... ......|+|+++... -
T Consensus 15 ~~~~c~L~~k~~~~-g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~ 82 (137)
T PF04364_consen 15 ERFACRLAEKAYRQ-GQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--N 82 (137)
T ss_dssp HHHHHHHHHHHHHT-T--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS----
T ss_pred HHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--C
Confidence 35666777776543 67999999999999999999976644444444422111 112358999997643 2
Q ss_pred CCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCC--ChHHHHHHHHHHHhcCC
Q psy9620 365 DVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ--NSRQAKDLIDVLTESNH 424 (453)
Q Consensus 365 Dip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~--~~~~~~~l~~~l~~~~~ 424 (453)
..+..+++||.+.. ...+..+. ..++-|+..+ .....++-.+.++..+-
T Consensus 83 ~~~~~~vLinL~~~--~p~~~~~f---------~rvieiv~~~~~~~~~aR~r~r~Yk~~G~ 133 (137)
T PF04364_consen 83 PNNHADVLINLSGE--VPPFFSRF---------ERVIEIVDQDDEAKQAARERYRFYKDRGY 133 (137)
T ss_dssp --S--SEEEE--SS----GGGGG----------SEEEEEE-SSHHHHHHHHHHHHHHHHTTE
T ss_pred CCCCCCEEEECCCC--Ccchhhcc---------cEEEEEecCCHHHHHHHHHHHHHHHHcCC
Confidence 23346789988754 22332222 2456666554 33445555556665543
No 391
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=77.36 E-value=4 Score=34.11 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=22.9
Q ss_pred EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 153 MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
+++++++|+|||......+..... .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~--------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh--------cCCEEEEEECCcch
Confidence 578999999999754333322221 24456766655443
No 392
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.31 E-value=17 Score=28.91 Aligned_cols=73 Identities=12% Similarity=0.202 Sum_probs=48.6
Q ss_pred chhhhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 283 EKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYG---WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
-|...+..++..... ....++||+|++...++.+.+.+.... ..+..+++.....+.. ........|+++|.
T Consensus 12 GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~ 87 (144)
T cd00046 12 GKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTP 87 (144)
T ss_pred chhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECc
Confidence 344444444444432 245799999999999998888877654 6778888876554443 33345778888886
Q ss_pred c
Q psy9620 359 V 359 (453)
Q Consensus 359 ~ 359 (453)
-
T Consensus 88 ~ 88 (144)
T cd00046 88 G 88 (144)
T ss_pred H
Confidence 5
No 393
>KOG3915|consensus
Probab=76.98 E-value=6 Score=38.70 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=8.3
Q ss_pred EEEEcCCHHHHHHH
Q psy9620 189 VLVLAPTRELAQQI 202 (453)
Q Consensus 189 vlil~Ptr~La~q~ 202 (453)
-|.|+|..--++|+
T Consensus 224 RLdI~PvVCnVEQV 237 (641)
T KOG3915|consen 224 RLDITPVVCNVEQV 237 (641)
T ss_pred ccceeeeeechHHH
Confidence 46666665556664
No 394
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=76.85 E-value=1.8 Score=35.54 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=25.5
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQ 201 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q 201 (453)
.+.-+++.++.|+|||.. .-.++..+. ...-|-+||-.|++.
T Consensus 21 ~~~~i~l~G~lGaGKTtl-~~~l~~~lg----------~~~~v~SPTf~lv~~ 62 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTL-VQGLLQGLG----------IQGNVTSPTFTLVNE 62 (133)
T ss_pred CCCEEEEEcCCCCCHHHH-HHHHHHHcC----------CCCcccCCCeeeeee
Confidence 456677999999999943 333333321 112366788666554
No 395
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=76.84 E-value=2.4 Score=43.99 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 134 DRPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
...+|+|.+.+..+... +.++++.++-+|||.+.+..+...+... ...+|++.||.++|.+..
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-------P~~~l~v~Pt~~~a~~~~ 79 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD-------PGPMLYVQPTDDAAKDFS 79 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC-------CCCEEEEEEcHHHHHHHH
Confidence 37889999999988754 5788999999999986544443333332 223899999999999865
No 396
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=76.82 E-value=7.6 Score=35.64 Aligned_cols=79 Identities=19% Similarity=0.314 Sum_probs=51.1
Q ss_pred CCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC------CCcE
Q psy9620 298 KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD------DVKF 371 (453)
Q Consensus 298 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip------~v~~ 371 (453)
.+.-++|||++...-.-...+.+++..-.+..+.+... |--.++.. ..+|.+.+|...+|..|+ .++.
T Consensus 60 Dp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~--EDp~~i~~----~aDi~~~~D~~~~G~~i~~~Ak~mGAkt 133 (275)
T PF12683_consen 60 DPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPH--EDPEVISS----AADIVVNPDEISRGYTIVWAAKKMGAKT 133 (275)
T ss_dssp -TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS----S-HHHHHH----HSSEEEE--HHHHHHHHHHHHHHTT-S-
T ss_pred CCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCc--CCHHHHhh----ccCeEeccchhhccHHHHHHHHHcCCce
Confidence 45569999999998888888888887777777777532 22222332 468999999999999886 6778
Q ss_pred EEEcCCCCChh
Q psy9620 372 VINFDYPNNSE 382 (453)
Q Consensus 372 VI~~d~p~s~~ 382 (453)
.|||.+|+.+.
T Consensus 134 FVh~sfprhms 144 (275)
T PF12683_consen 134 FVHYSFPRHMS 144 (275)
T ss_dssp EEEEEETTGGG
T ss_pred EEEEechhhcc
Confidence 99999998765
No 397
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=76.68 E-value=1.8 Score=34.51 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=12.8
Q ss_pred EEEEecCCCcchhhh
Q psy9620 153 MVGVAQTGSGKTLAY 167 (453)
Q Consensus 153 ~li~a~TGsGKT~~~ 167 (453)
++|++++|||||...
T Consensus 2 I~I~G~~gsGKST~a 16 (121)
T PF13207_consen 2 IIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999654
No 398
>KOG0335|consensus
Probab=76.62 E-value=35 Score=34.28 Aligned_cols=69 Identities=29% Similarity=0.476 Sum_probs=52.0
Q ss_pred CcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCccC-CCCCCCc
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAARG-LDVDDVK 370 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-iDip~v~ 370 (453)
..+||..+|++-|+.+++.-++. ...+....++.+ ......+....++|||||. ++++| |.++++.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~----~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTD----LGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcc----hhhhhhhhccCccEEEecCchhhhhhhcceeehhhCc
Confidence 57999999999999999887654 456666777632 2334556677899999995 67777 7888888
Q ss_pred EEE
Q psy9620 371 FVI 373 (453)
Q Consensus 371 ~VI 373 (453)
++|
T Consensus 229 ~~v 231 (482)
T KOG0335|consen 229 FLV 231 (482)
T ss_pred EEE
Confidence 655
No 399
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=76.26 E-value=2 Score=37.66 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=19.7
Q ss_pred HHHHHHhcCCc--EEEEecCCCcchhh
Q psy9620 142 QGWPIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 142 ~~i~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
.++..+++|.| +++.++||||||.+
T Consensus 14 ~~v~~~~~G~n~~i~~yG~tGsGKT~T 40 (186)
T cd01363 14 PLLQSALDGYNVCIFAYGQTGSGKTYT 40 (186)
T ss_pred HHHHHHhCCcceeEEEECCCCCcceEe
Confidence 56677778876 56779999999965
No 400
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=75.94 E-value=4.4 Score=36.82 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=33.3
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.+.-+++.+++|+|||...+.-+...+. .+-+++++.=- +-..++.+.+..++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~--------~g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK--------QGKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh--------CCCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 3567889999999999655443333332 24456666543 44566677777764
No 401
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=75.59 E-value=3.3 Score=45.77 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=27.5
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~ 197 (453)
..+++|.|+||||||+....-+.+.+.. .+++++|+=|-++
T Consensus 475 n~n~~I~G~TGSGKS~l~~~li~q~~~~-------~~~~v~IiD~g~s 515 (893)
T TIGR03744 475 NAHLLILGPTGAGKSATLTNLLMQVMAV-------HRPRLFIVEAGNS 515 (893)
T ss_pred cccEEEECCCCCCHHHHHHHHHHHHHHh-------cCCEEEEEcCCCC
Confidence 4578999999999997654444333322 2556777777665
No 402
>PRK10867 signal recognition particle protein; Provisional
Probab=75.51 E-value=20 Score=35.87 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=14.4
Q ss_pred cEEEEecCCCcchhhhhH
Q psy9620 152 NMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l 169 (453)
-+++++++|+|||.+..-
T Consensus 102 vI~~vG~~GsGKTTtaak 119 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 367889999999976543
No 403
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=75.32 E-value=52 Score=36.06 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=16.7
Q ss_pred CcEEEEecCCCcchhhhhHHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~ 171 (453)
+-+|+++|.|+|||.++.+.+
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lA 58 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILA 58 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 347999999999998765544
No 404
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=75.23 E-value=1.8 Score=37.31 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=13.6
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
++++.+|||+|||..+
T Consensus 5 ~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6789999999999643
No 405
>KOG0239|consensus
Probab=75.22 E-value=76 Score=33.82 Aligned_cols=36 Identities=36% Similarity=0.458 Sum_probs=25.4
Q ss_pred CCCHHHHHHHH-------HHhcCCcE--EEEecCCCcchhhhhHH
Q psy9620 135 RPTPIQAQGWP-------IAMSGSNM--VGVAQTGSGKTLAYMLP 170 (453)
Q Consensus 135 ~~~~~Q~~~i~-------~i~~g~d~--li~a~TGsGKT~~~~l~ 170 (453)
.|..-|.+++. .++.|.++ +..++||||||.+..=|
T Consensus 369 ~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~ 413 (670)
T KOG0239|consen 369 GPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP 413 (670)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCC
Confidence 56777877764 34567765 45579999999876543
No 406
>KOG0389|consensus
Probab=75.03 E-value=16 Score=38.75 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=44.9
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHh--cCCeEEEEcCCCCHHHHHHHHHHHhcC--CCcEEEEeccCcc
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQN--YGWAAVGIHGDKSQQERDYVLKEFRNG--RAGILVATDVAAR 362 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~--~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vLvaT~~~~~ 362 (453)
..+|-||.||+.- .+.+-+.|.. ..+.|..+|| ++.||.++-..+..+ ..+|||+|=-++.
T Consensus 447 ~~gpHLVVvPsST-leNWlrEf~kwCPsl~Ve~YyG--Sq~ER~~lR~~i~~~~~~ydVllTTY~la~ 511 (941)
T KOG0389|consen 447 NPGPHLVVVPSST-LENWLREFAKWCPSLKVEPYYG--SQDERRELRERIKKNKDDYDVLLTTYNLAA 511 (941)
T ss_pred CCCCcEEEecchh-HHHHHHHHHHhCCceEEEeccC--cHHHHHHHHHHHhccCCCccEEEEEeeccc
Confidence 3678999999853 3333333433 2678899999 679999999999876 7899999965543
No 407
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=74.98 E-value=22 Score=30.20 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=40.1
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCC-------------CCCCcEEEEEcCCHH----HHHHHHHHHHHhcC--
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLK-------------PGDGPIVLVLAPTRE----LAQQIQEVARDFGS-- 211 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~-------------~~~~~~vlil~Ptr~----La~q~~~~~~~~~~-- 211 (453)
+.+|+.+|.|+||+..+..-+ ..+....... ....|.++++.|... ..+|+.+....+..
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a-~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~ 98 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFA-RALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSP 98 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHH-HHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-
T ss_pred eeEEEECCCCCCHHHHHHHHH-HHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHH
Confidence 357999999999996654333 3333322111 134677888888754 56676644444321
Q ss_pred -CCCceEEEEeCCc
Q psy9620 212 -STYLRSTCVYGGA 224 (453)
Q Consensus 212 -~~~~~~~~~~gg~ 224 (453)
....++..+....
T Consensus 99 ~~~~~KviiI~~ad 112 (162)
T PF13177_consen 99 SEGKYKVIIIDEAD 112 (162)
T ss_dssp TTSSSEEEEEETGG
T ss_pred hcCCceEEEeehHh
Confidence 1234555554433
No 408
>KOG0329|consensus
Probab=74.96 E-value=14 Score=33.62 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=69.5
Q ss_pred cEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec------cCccCCCCCCCc
Q psy9620 302 KTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD------VAARGLDVDDVK 370 (453)
Q Consensus 302 ~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~GiDip~v~ 370 (453)
.+||.|.|++-|-.+.+..... +..+..+.|+++-..-+++++. -..|+|+|+ +-.+-+++.+|+
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 7899999999998888876543 6788899999987766666655 567999997 223668888888
Q ss_pred EEEEcCCCC-----ChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 371 FVINFDYPN-----NSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 371 ~VI~~d~p~-----s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
+.+.-...+ ++..=+|.+=|+- ...+-+.+++....+..+.++.
T Consensus 188 hFvlDEcdkmle~lDMrRDvQEifr~t---p~~KQvmmfsatlskeiRpvC~ 236 (387)
T KOG0329|consen 188 HFVLDECDKMLEQLDMRRDVQEIFRMT---PHEKQVMMFSATLSKEIRPVCH 236 (387)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHhhcC---cccceeeeeeeecchhhHHHHH
Confidence 766422111 1222245554432 2334455555554444555443
No 409
>PLN02165 adenylate isopentenyltransferase
Probab=74.85 E-value=1.3 Score=42.42 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=16.7
Q ss_pred cCCcEEEEecCCCcchhhhhH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l 169 (453)
.+..++|.+|||||||..+..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 456788999999999976543
No 410
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=74.64 E-value=13 Score=37.29 Aligned_cols=19 Identities=32% Similarity=0.228 Sum_probs=15.0
Q ss_pred cEEEEecCCCcchhhhhHH
Q psy9620 152 NMVGVAQTGSGKTLAYMLP 170 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~ 170 (453)
-+++++++|+|||.+..--
T Consensus 101 vi~~vG~~GsGKTTtaakL 119 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKL 119 (428)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4778999999999775443
No 411
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=74.44 E-value=8.3 Score=39.91 Aligned_cols=59 Identities=19% Similarity=0.304 Sum_probs=54.0
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
.+.+||..|=..-.++=.+.|...|+.+..+|+.++..+|..++..+..|.+++|.-++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 56899999998888888888999999999999999999999999999999999997665
No 412
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=74.43 E-value=1.8 Score=34.75 Aligned_cols=15 Identities=33% Similarity=0.206 Sum_probs=12.9
Q ss_pred EEEEecCCCcchhhh
Q psy9620 153 MVGVAQTGSGKTLAY 167 (453)
Q Consensus 153 ~li~a~TGsGKT~~~ 167 (453)
+++.+++|||||.+.
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999764
No 413
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=74.41 E-value=2.5 Score=42.03 Aligned_cols=18 Identities=39% Similarity=0.678 Sum_probs=16.2
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
-|+++++.+|.|||||+.
T Consensus 197 GgHnLl~~GpPGtGKTml 214 (490)
T COG0606 197 GGHNLLLVGPPGTGKTML 214 (490)
T ss_pred cCCcEEEecCCCCchHHh
Confidence 589999999999999954
No 414
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=74.36 E-value=2 Score=37.30 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=13.9
Q ss_pred CCcEEEEecCCCcchhhhhH
Q psy9620 150 GSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l 169 (453)
...+++++|.|||||..|..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~ 22 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQ 22 (181)
T ss_dssp --EEEEE-STTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 45789999999999965533
No 415
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=74.18 E-value=7.8 Score=36.22 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=15.8
Q ss_pred CcEEEEecCCCcchhhhhHHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~ 171 (453)
+-+++++++|+|||.+..-.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 457788999999997654433
No 416
>KOG0350|consensus
Probab=74.16 E-value=8.4 Score=38.53 Aligned_cols=73 Identities=19% Similarity=0.365 Sum_probs=53.1
Q ss_pred cEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCH-HHHHHHHHHHhcCCCcEEEEecc-------CccCCCCCCC
Q psy9620 302 KTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQ-QERDYVLKEFRNGRAGILVATDV-------AARGLDVDDV 369 (453)
Q Consensus 302 ~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~-~~r~~~~~~f~~g~~~vLvaT~~-------~~~GiDip~v 369 (453)
++||.++++.-+-++++.|... ++.|..+.+.-+- .|..+..+.-...+++|||+|+- .-.|+|+.+.
T Consensus 217 RavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~L 296 (620)
T KOG0350|consen 217 RAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHL 296 (620)
T ss_pred EEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhc
Confidence 7999999999999999998864 5666666664332 23334444445567899999983 3578899888
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
+++|.
T Consensus 297 rfLVI 301 (620)
T KOG0350|consen 297 RFLVI 301 (620)
T ss_pred eEEEe
Confidence 87664
No 417
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=74.05 E-value=15 Score=31.48 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=25.9
Q ss_pred HHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH
Q psy9620 146 IAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR 196 (453)
Q Consensus 146 ~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr 196 (453)
.+.....+++++++|+||++.+-. ++. .. .+..+|.+.|=|...
T Consensus 18 ~a~~~~pVlI~GE~GtGK~~lA~~--IH~----~s-~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 18 AASSDLPVLITGETGTGKELLARA--IHN----NS-PRKNGPFISVNCAAL 61 (168)
T ss_dssp HTTSTS-EEEECSTTSSHHHHHHH--HHH----CS-TTTTS-EEEEETTTS
T ss_pred HhCCCCCEEEEcCCCCcHHHHHHH--HHH----hh-hcccCCeEEEehhhh
Confidence 334567899999999999964321 222 11 122567777777654
No 418
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=73.95 E-value=20 Score=36.20 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=25.6
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
..+++.||+|+|||.... ++...+.. .+.+++++.. ..+..++
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~-------~~~~v~yi~~-~~f~~~~ 184 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE-------SGGKILYVRS-ELFTEHL 184 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH-------cCCCEEEeeH-HHHHHHH
Confidence 458999999999996533 33333332 1345776654 4444443
No 419
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=73.90 E-value=74 Score=29.34 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHhcC-CeEEEEcCCC
Q psy9620 309 TKRKVDKITKSIQNYG-WAAVGIHGDK 334 (453)
Q Consensus 309 s~~~~~~l~~~L~~~~-~~~~~~h~~~ 334 (453)
|..-|++|++.|+..+ +.+...|-++
T Consensus 257 SV~iae~La~~l~~~~~~~v~v~HRd~ 283 (286)
T COG1660 257 SVYIAEQLAEYLRARGKYNVQVRHRDL 283 (286)
T ss_pred hHHHHHHHHHHHHhccCceEEEeehhh
Confidence 5677889999998874 4777777665
No 420
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=73.80 E-value=2.2 Score=34.41 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=12.7
Q ss_pred EEEEecCCCcchhhh
Q psy9620 153 MVGVAQTGSGKTLAY 167 (453)
Q Consensus 153 ~li~a~TGsGKT~~~ 167 (453)
+++.+|.|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999653
No 421
>PRK13531 regulatory ATPase RavA; Provisional
Probab=73.71 E-value=4.3 Score=40.94 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=21.1
Q ss_pred HHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 142 QGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 142 ~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
.++-.++.+.++++.+|+|+|||..+
T Consensus 31 lll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 31 LCLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHccCCCEEEECCCChhHHHHH
Confidence 33445668999999999999999765
No 422
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=73.66 E-value=6.9 Score=38.77 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=37.7
Q ss_pred EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH-HHHHHHHHHHHh
Q psy9620 153 MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE-LAQQIQEVARDF 209 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~-La~q~~~~~~~~ 209 (453)
.++.+..|||||.+..+-++..+.... .+.++|++-|+.. |..-+...+...
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~sl~~sv~~~l~~~ 56 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK-----KQQNILAARKVQNSIRDSVFKDIENL 56 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC-----CCcEEEEEehhhhHHHHHHHHHHHHH
Confidence 578899999999988877777666541 3467899989887 555555555544
No 423
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=73.46 E-value=5.8 Score=37.92 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=27.8
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ 200 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~ 200 (453)
.|+-+++.+|+|+|||...+-.+.... . .+..++++.....+..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~-~-------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ-K-------AGGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H-------cCCcEEEEcccchhHH
Confidence 456788999999999976544333332 2 2455777765544443
No 424
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=73.32 E-value=6.9 Score=35.04 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
|.-+++.+++|+|||...+..+..... .+..++++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~--------~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAG--------QGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--------cCCeEEEEE
Confidence 566889999999999655443333221 244577773
No 425
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=73.30 E-value=8.9 Score=28.72 Aligned_cols=39 Identities=8% Similarity=0.299 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcchhHHHHHHHHHHhcCCe-EEEEcCCCCH
Q psy9620 298 KDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 336 (453)
Q Consensus 298 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 336 (453)
....++||||.+-..+..++..|...|+. +..+.|++..
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 34678999999989999999999999987 7888888643
No 426
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=73.00 E-value=24 Score=35.55 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=54.0
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc-C---CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec------cCccCCCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY-G---WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD------VAARGLDVDDV 369 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~-~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~GiDip~v 369 (453)
.+++|+..||+--+.+-+..+... + -.+..++|..++++|..... +.+|+|||+ +.+--||+.++
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~dv 132 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDDV 132 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCccChHHc
Confidence 448999999998887777777653 3 35789999999999977654 368999996 23334899999
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
.++|.
T Consensus 133 ~~lif 137 (542)
T COG1111 133 SLLIF 137 (542)
T ss_pred eEEEe
Confidence 98885
No 427
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=72.98 E-value=1.9 Score=40.80 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=13.8
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
+-++|++|||||||..+
T Consensus 5 ~ii~I~GpTasGKS~LA 21 (300)
T PRK14729 5 KIVFIFGPTAVGKSNIL 21 (300)
T ss_pred cEEEEECCCccCHHHHH
Confidence 44789999999999654
No 428
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=72.97 E-value=6.8 Score=39.71 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=16.7
Q ss_pred CCcEEEEecCCCcchhhhhHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~ 171 (453)
++-+++++|||+|||.+....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 4457899999999998754433
No 429
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=72.88 E-value=18 Score=32.41 Aligned_cols=46 Identities=22% Similarity=0.136 Sum_probs=26.0
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR 196 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr 196 (453)
.|+-+.+.+++|+|||...+..+...+... .. .+....++++....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~-~~-~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPG-EL-GGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhccc-cc-CCCcceEEEEecCC
Confidence 356788999999999976544333322211 00 01124577776543
No 430
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=72.75 E-value=3.7 Score=33.18 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=21.9
Q ss_pred hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
..+.-+++.++-|+|||. |.-.++..+-. ..-|.+||-.|+
T Consensus 13 ~~g~vi~L~GdLGaGKTt-f~r~l~~~lg~----------~~~V~SPTF~l~ 53 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTT-FVRGLARALGI----------DEEVTSPTFSLV 53 (123)
T ss_dssp SS-EEEEEEESTTSSHHH-HHHHHHHHTT------------S----TTTTSE
T ss_pred CCCCEEEEECCCCCCHHH-HHHHHHHHcCC----------CCCcCCCCeEEE
Confidence 345567789999999994 43444444311 125778886654
No 431
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=72.72 E-value=38 Score=28.87 Aligned_cols=88 Identities=19% Similarity=0.333 Sum_probs=51.8
Q ss_pred chhhhHHH-HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcC-----CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy9620 283 EKENKLFG-LLNDISSKDENKTIIFAETKRKVDKITKSIQNYG-----WAAVGIHGDKSQQERDYVLKEFRNGRAGILVA 356 (453)
Q Consensus 283 ~k~~~l~~-ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLva 356 (453)
-|...+.. ++..+......++||.+++...+..+...+.... .....+++... ...++.+..+...|+++
T Consensus 36 GKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~ 111 (201)
T smart00487 36 GKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVT 111 (201)
T ss_pred chhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEe
Confidence 35443333 3333333334689999999999988888877653 33445555433 33455566666699999
Q ss_pred e-----ccCccC-CCCCCCcEEEE
Q psy9620 357 T-----DVAARG-LDVDDVKFVIN 374 (453)
Q Consensus 357 T-----~~~~~G-iDip~v~~VI~ 374 (453)
| +.+... ++...+.++|.
T Consensus 112 t~~~l~~~~~~~~~~~~~~~~iIi 135 (201)
T smart00487 112 TPGRLLDLLENDLLELSNVDLVIL 135 (201)
T ss_pred ChHHHHHHHHcCCcCHhHCCEEEE
Confidence 9 333332 35555655553
No 432
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=72.50 E-value=5.2 Score=34.38 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=29.1
Q ss_pred EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 153 MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
+++.+++|||||.-+.--+. . .+.++++++-...+-..+.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~----~-------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAA----E-------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHH----h-------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 57899999999965432221 1 233588888777776666555444
No 433
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=72.30 E-value=3.9 Score=42.56 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=19.4
Q ss_pred hcCCcEEEEecCCCcchhhhhHHHHHHh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYMLPAIVHI 175 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~l~~l~~~ 175 (453)
...+++++.|+||||||.+ +-.++..+
T Consensus 174 ~e~~h~li~G~tGsGKs~~-i~~ll~~~ 200 (566)
T TIGR02759 174 SETQHILIHGTTGSGKSVA-IRKLLRWI 200 (566)
T ss_pred ccccceEEEcCCCCCHHHH-HHHHHHHH
Confidence 3467899999999999953 34444444
No 434
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=72.26 E-value=2.9 Score=41.48 Aligned_cols=18 Identities=50% Similarity=0.601 Sum_probs=15.2
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
..++++.+|||+|||..+
T Consensus 116 ~~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLA 133 (413)
T ss_pred CceEEEECCCCcCHHHHH
Confidence 357999999999999764
No 435
>KOG0298|consensus
Probab=72.19 E-value=6.8 Score=43.55 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=72.3
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYP 378 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 378 (453)
...++|||+.-...-+.+...+...++.....-+ .++-...+..|++ ---.|+-+...+-|+++-+..||+..++-
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 3468999998877777777777665554332222 3344556677776 22355777888999999999999999999
Q ss_pred CChhHHHHhhhcccCCCCcc
Q psy9620 379 NNSEDYIHRIGRTGRSDNTG 398 (453)
Q Consensus 379 ~s~~~y~qr~GRagR~g~~g 398 (453)
.+..+-.|-+||+-|.|++-
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred cCchHHHhhhhhhhhccccc
Confidence 99999999999999998753
No 436
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=72.11 E-value=13 Score=37.24 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=15.1
Q ss_pred CcEEEEecCCCcchhhhhH
Q psy9620 151 SNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l 169 (453)
..+++++++|+|||.+..-
T Consensus 96 ~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3578899999999977543
No 437
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=72.09 E-value=4.5 Score=40.05 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=20.6
Q ss_pred HHHhcCCcEEEEecCCCcchhhhhH
Q psy9620 145 PIAMSGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 145 ~~i~~g~d~li~a~TGsGKT~~~~l 169 (453)
+.+..+.|++..+|+|+|||..|.-
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHH
Confidence 4555789999999999999966653
No 438
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=72.01 E-value=4 Score=33.61 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=18.6
Q ss_pred HHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 142 QGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 142 ~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
++-........++++++.|+||+.++
T Consensus 13 ~l~~~a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 13 QLERLAKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HHHHHHCSSS-EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCCcEEEEcCCCCCHHHHH
Confidence 33334456789999999999999653
No 439
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=72.00 E-value=56 Score=27.09 Aligned_cols=122 Identities=10% Similarity=0.116 Sum_probs=72.2
Q ss_pred ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 281 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 281 ~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
...+...+..++.+.... +.+++|+|++...++.|-+.|-...-...+=|+..... ......|+|+..-
T Consensus 11 ~~~~~~~~c~L~~ka~~~-g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~l~~~~- 79 (142)
T PRK05728 11 LSALEALLCELAEKALRA-GWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PAAGQPVLLTWPG- 79 (142)
T ss_pred chhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CCCCCCEEEEcCC-
Confidence 344566677777776543 77999999999999999999976544444446532211 1235689987211
Q ss_pred ccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcC--CChHHHHHHHHHHHhcCCCC
Q psy9620 361 ARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ--QNSRQAKDLIDVLTESNHPV 426 (453)
Q Consensus 361 ~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~--~~~~~~~~l~~~l~~~~~~v 426 (453)
.-+.+...++||.+.- .-.+..+.- .++-|+.. ......+.-.+.+++.+.++
T Consensus 80 --~~~~~~~~~LinL~~~--~p~~~~~F~---------Rvieiv~~d~~~~~~aR~r~r~Yr~~G~~l 134 (142)
T PRK05728 80 --KRNANHRDLLINLDGA--VPAFAAAFE---------RVVDFVGYDEAAKQAARERWKAYRAAGYAL 134 (142)
T ss_pred --CCCCCCCcEEEECCCC--Ccchhhccc---------EEEEEeCCCHHHHHHHHHHHHHHHHCCCCc
Confidence 1234556778887642 233333322 34555533 23445566666777666544
No 440
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=71.97 E-value=16 Score=38.91 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=48.5
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHH
Q psy9620 126 KEVKRQGFDRPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQ 203 (453)
Q Consensus 126 ~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~ 203 (453)
..+.....+.+..-|.+.+..+++. +-+++.|.-|=|||.+.=+.+....... ....++|.+|+.+-++.+.
T Consensus 205 ~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~------~~~~iiVTAP~~~nv~~Lf 278 (758)
T COG1444 205 RELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA------GSVRIIVTAPTPANVQTLF 278 (758)
T ss_pred HHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc------CCceEEEeCCCHHHHHHHH
Confidence 3344443444444555555556643 3578899999999987666553322221 1346999999999888776
Q ss_pred HHHHH
Q psy9620 204 EVARD 208 (453)
Q Consensus 204 ~~~~~ 208 (453)
+.+.+
T Consensus 279 ~fa~~ 283 (758)
T COG1444 279 EFAGK 283 (758)
T ss_pred HHHHH
Confidence 65443
No 441
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=71.93 E-value=7 Score=29.30 Aligned_cols=36 Identities=8% Similarity=0.255 Sum_probs=31.1
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 335 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~ 335 (453)
..++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 51 ~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 51 DKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 568999999877888899999999998888999874
No 442
>PRK13342 recombination factor protein RarA; Reviewed
Probab=71.89 E-value=15 Score=36.77 Aligned_cols=19 Identities=32% Similarity=0.365 Sum_probs=15.4
Q ss_pred CcEEEEecCCCcchhhhhH
Q psy9620 151 SNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l 169 (453)
.++++.+|+|+|||..+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3789999999999976543
No 443
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=71.73 E-value=18 Score=33.17 Aligned_cols=57 Identities=21% Similarity=0.326 Sum_probs=32.7
Q ss_pred HhcCC-cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 147 AMSGS-NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 147 i~~g~-d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+..++ -+.++++-|||||+..- +++..+... .-..++|-.||...+.-...++..+.
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d------~~~~v~i~~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR-ALLASLNED------QVAVVVIDKPTLSDATLLEAIVADLE 104 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH-HHHHhcCCC------ceEEEEecCcchhHHHHHHHHHHHhc
Confidence 44555 67799999999998765 444433321 11123344466555555555566653
No 444
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=71.63 E-value=6.9 Score=35.14 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=16.4
Q ss_pred cCCcEEEEecCCCcchhhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~ 168 (453)
....+++.|++|+|||....
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999996543
No 445
>KOG1132|consensus
Probab=71.51 E-value=73 Score=34.54 Aligned_cols=79 Identities=24% Similarity=0.229 Sum_probs=48.1
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHHHhc--------CCCcEEEEeccCccC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY-------GWAAVGIHGDKSQQERDYVLKEFRN--------GRAGILVATDVAARG 363 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~--------g~~~vLvaT~~~~~G 363 (453)
-...+|||+++....+++..+.... ...- .+..-.+..+-.+++..|-+ |..-+.||---+++|
T Consensus 560 Vp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEG 638 (945)
T KOG1132|consen 560 VPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEG 638 (945)
T ss_pred cccceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCC
Confidence 3446999999998888775555432 1111 12222234444555555543 233455666788999
Q ss_pred CCCCCC--cEEEEcCCC
Q psy9620 364 LDVDDV--KFVINFDYP 378 (453)
Q Consensus 364 iDip~v--~~VI~~d~p 378 (453)
||+.|- +.||..++|
T Consensus 639 lDFsD~~~RaVI~tGlP 655 (945)
T KOG1132|consen 639 LDFSDDNGRAVIITGLP 655 (945)
T ss_pred CCccccCCceeEEecCC
Confidence 999864 468887776
No 446
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=71.29 E-value=2.3 Score=40.10 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.6
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+.++++.+|+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999765
No 447
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=71.05 E-value=10 Score=30.70 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=15.5
Q ss_pred CcEE--EEecCCCcchhhhhHHH
Q psy9620 151 SNMV--GVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 151 ~d~l--i~a~TGsGKT~~~~l~~ 171 (453)
+.++ +.++||+|||.+.-+-+
T Consensus 52 KpLVlSfHG~tGtGKn~v~~liA 74 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVSRLIA 74 (127)
T ss_pred CCEEEEeecCCCCcHHHHHHHHH
Confidence 4555 66999999998766543
No 448
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=70.96 E-value=4.4 Score=38.70 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=18.3
Q ss_pred HHhcCCcEEEEecCCCcchhhh
Q psy9620 146 IAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 146 ~i~~g~d~li~a~TGsGKT~~~ 167 (453)
.+..++++++.+++|+|||...
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHH
Confidence 3456889999999999999654
No 449
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=70.87 E-value=7.4 Score=37.28 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=28.9
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ 200 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~ 200 (453)
.|+-+.+.+|+|+|||...+..+.... . .+..++++...-.+-.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~-~-------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQ-K-------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H-------cCCCEEEECccccHHH
Confidence 356788999999999965544333332 2 2456888877665544
No 450
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=70.77 E-value=2.5 Score=34.86 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=12.3
Q ss_pred EEEEecCCCcchhh
Q psy9620 153 MVGVAQTGSGKTLA 166 (453)
Q Consensus 153 ~li~a~TGsGKT~~ 166 (453)
++++|++|||||..
T Consensus 2 ii~~G~pgsGKSt~ 15 (143)
T PF13671_consen 2 IILCGPPGSGKSTL 15 (143)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999964
No 451
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=70.71 E-value=12 Score=34.07 Aligned_cols=42 Identities=24% Similarity=0.202 Sum_probs=24.3
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCC----CCCCCCcEEEEEc
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQ----LKPGDGPIVLVLA 193 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~----~~~~~~~~vlil~ 193 (453)
-.++.||.|+|||...+-.++......+- .....+.+|||++
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 35889999999997655444432221110 0112345688887
No 452
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=70.69 E-value=4.9 Score=43.92 Aligned_cols=39 Identities=23% Similarity=0.212 Sum_probs=25.6
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~ 197 (453)
.+++|+|+||+|||+....-+.. +.. .+++++|+=|..+
T Consensus 431 ~n~~I~G~tGsGKS~~~~~l~~~-~~~-------~g~~v~iiD~~~s 469 (797)
T TIGR02746 431 YNIAVVGGSGAGKSFFMQELIVD-NLS-------RGGKVWVIDVGRS 469 (797)
T ss_pred cceEEEcCCCCCHHHHHHHHHHH-HHh-------CCCEEEEEeCCCC
Confidence 47999999999999765443332 222 2456777766544
No 453
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=70.68 E-value=6.1 Score=35.70 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=28.1
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
.+++.|.|.||||||.+... ++..+... .+..+||+=|.=|=
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~-ll~~l~~~------~~~~~ii~D~~GEY 64 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKV-LLEELLKK------KGAKVIIFDPHGEY 64 (229)
T ss_pred cceEEEECCCCCCHHHHHHH-HHHHHHhc------CCCCEEEEcCCCcc
Confidence 57899999999999966433 44444421 34457777776553
No 454
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=70.61 E-value=4 Score=39.68 Aligned_cols=38 Identities=18% Similarity=0.407 Sum_probs=27.6
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
.|+.+||.+..|+|||+ |.+-+|..+.... .+++|++.
T Consensus 9 ~G~TLLIKG~PGTGKTt-faLelL~~l~~~~--------~v~YISTR 46 (484)
T PF07088_consen 9 PGQTLLIKGEPGTGKTT-FALELLNSLKDHG--------NVMYISTR 46 (484)
T ss_pred CCcEEEEecCCCCCcee-eehhhHHHHhccC--------CeEEEEec
Confidence 57899999999999995 4455666655432 27777766
No 455
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=70.59 E-value=64 Score=27.19 Aligned_cols=126 Identities=12% Similarity=0.233 Sum_probs=77.9
Q ss_pred ccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 279 CAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 279 ~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
.....+...+..|+++.... +.+++|.|.+...++.|=+.|=...-....=|+..... ......|+|+++
T Consensus 9 L~~~~~~~~acrL~~Ka~~~-G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~---------~~a~~PV~L~~~ 78 (154)
T PRK06646 9 TSDELLLKSILLLIEKCYYS-DLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDP---------QPEKQPIYITDE 78 (154)
T ss_pred eCCChHHHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCC---------CCCCCCEEEecC
Confidence 35556677777888877654 67999999999999999999876544444446532211 023567888854
Q ss_pred cCccCCCCCCCcEEEEcCC---CC--ChhHHHHhhhcccCCCCcceEEEEE-cCCChHHHHHHHHHHHhcCCCCC
Q psy9620 359 VAARGLDVDDVKFVINFDY---PN--NSEDYIHRIGRTGRSDNTGTSYTFF-TQQNSRQAKDLIDVLTESNHPVD 427 (453)
Q Consensus 359 ~~~~GiDip~v~~VI~~d~---p~--s~~~y~qr~GRagR~g~~g~~~~~~-~~~~~~~~~~l~~~l~~~~~~v~ 427 (453)
.- +.+..+++||.+. +. ..-.|..+.-| ++.++ ++.+...++.-.+.++..+.++.
T Consensus 79 ~~----~p~~~~vLiNL~~~~~~~~~~~p~~f~~F~R---------Vi~vv~d~e~~~~ar~~w~~~k~~~~~~~ 140 (154)
T PRK06646 79 LQ----NPNNASVLVIISPTDIGKILQAKEYIRVFKR---------IIIITDLPEDLKELTVKINKFTGQENKID 140 (154)
T ss_pred CC----CCCCCCEEEECCCccccccccCchhhhccCE---------EEEEeCChHHHHHHHHHHHHHHhCCCcce
Confidence 31 2225566888765 11 23344444433 23444 45566777777788887777653
No 456
>PRK11823 DNA repair protein RadA; Provisional
Probab=70.54 E-value=6.6 Score=39.58 Aligned_cols=53 Identities=28% Similarity=0.301 Sum_probs=34.2
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.|.-+++.+++|+|||...+..+.. +.. .+.++|++.- .+...|+...+..++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~-~a~-------~g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR-LAA-------AGGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH-HHh-------cCCeEEEEEc-cccHHHHHHHHHHcC
Confidence 3567889999999999654333322 221 2445888764 456677777777665
No 457
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=70.41 E-value=6.5 Score=40.48 Aligned_cols=52 Identities=33% Similarity=0.330 Sum_probs=34.1
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
|..+++.+++|+|||...+-.+...+. .+-++++++- .+...++.+.+..++
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~--------~g~~~~yis~-e~~~~~i~~~~~~~g 324 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACR--------RGERCLLFAF-EESRAQLIRNARSWG 324 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh--------CCCcEEEEEe-cCCHHHHHHHHHHcC
Confidence 466788999999999654443333332 2334777754 455777877777764
No 458
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=70.26 E-value=18 Score=41.91 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=53.4
Q ss_pred CCcEEEEEcchhHHHHHHHHHHh----------------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc----
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQN----------------YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV---- 359 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~----------------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~---- 359 (453)
..++|++++++.-+.++.+.|+. .++.+...||+.+..+|...++ ...+|||+|.-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----NPPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----CCCCEEEecHHHHHH
Confidence 35799999999999888887752 2578889999999999876443 46789999972
Q ss_pred -Cc-cC-CCCCCCcEEEE
Q psy9620 360 -AA-RG-LDVDDVKFVIN 374 (453)
Q Consensus 360 -~~-~G-iDip~v~~VI~ 374 (453)
+. +. ..+.+|++||.
T Consensus 113 LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 113 MLTSRARETLRGVETVII 130 (1490)
T ss_pred HHhhhhhhhhccCCEEEE
Confidence 22 22 35778888874
No 459
>KOG3875|consensus
Probab=70.11 E-value=11 Score=35.09 Aligned_cols=9 Identities=44% Similarity=0.885 Sum_probs=4.0
Q ss_pred hHHHHhhhc
Q psy9620 382 EDYIHRIGR 390 (453)
Q Consensus 382 ~~y~qr~GR 390 (453)
..|+-.+||
T Consensus 324 ~NYvkIi~r 332 (362)
T KOG3875|consen 324 INYVKIIGR 332 (362)
T ss_pred hhhhhhhhc
Confidence 344444444
No 460
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=70.06 E-value=2.9 Score=38.83 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.7
Q ss_pred CcEEEEecCCCcchhhhhH
Q psy9620 151 SNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l 169 (453)
.++++.+|+|+|||..+-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4789999999999976543
No 461
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=69.98 E-value=3 Score=34.37 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=12.0
Q ss_pred EEEEecCCCcchhh
Q psy9620 153 MVGVAQTGSGKTLA 166 (453)
Q Consensus 153 ~li~a~TGsGKT~~ 166 (453)
+++++|||+|||..
T Consensus 2 i~i~GpsGsGKstl 15 (137)
T cd00071 2 IVLSGPSGVGKSTL 15 (137)
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999953
No 462
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=69.75 E-value=9.7 Score=32.61 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=13.7
Q ss_pred EEEEecCCCcchhhhhH
Q psy9620 153 MVGVAQTGSGKTLAYML 169 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l 169 (453)
+++.+++|+|||.....
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57889999999976533
No 463
>PRK08084 DNA replication initiation factor; Provisional
Probab=69.72 E-value=7 Score=35.60 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=15.5
Q ss_pred CCcEEEEecCCCcchhhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~ 168 (453)
...+++++|+|+|||....
T Consensus 45 ~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4578999999999996543
No 464
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=69.62 E-value=21 Score=39.24 Aligned_cols=70 Identities=16% Similarity=0.272 Sum_probs=54.2
Q ss_pred hhhHHHHHHhhhcCCCCcEEEEEcchhHH----HHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 285 ENKLFGLLNDISSKDENKTIIFAETKRKV----DKITKSIQNYG--WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 285 ~~~l~~ll~~~~~~~~~~~lVF~~s~~~~----~~l~~~L~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
...++-+++.+......+.|++.|++.-+ +++.+++...+ +.+..++|+.++++|+ .+..+..+||+++.
T Consensus 100 e~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNp 175 (851)
T COG1205 100 ESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNP 175 (851)
T ss_pred HHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCH
Confidence 45566777777666677899999998654 56666666665 7889999999999987 55667899999985
No 465
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=69.60 E-value=45 Score=35.50 Aligned_cols=107 Identities=12% Similarity=0.201 Sum_probs=69.4
Q ss_pred EccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCe-EEEE--------------------c----
Q psy9620 278 VCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWA-AVGI--------------------H---- 331 (453)
Q Consensus 278 ~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~-~~~~--------------------h---- 331 (453)
-+....|...+..++... +.++||.++++..|..|+..|+.. .-+ |..+ +
T Consensus 36 Gvtgs~kt~~~a~~~~~~----~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~ 111 (655)
T TIGR00631 36 GVTGSGKTFTMANVIAQV----NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDAS 111 (655)
T ss_pred CCCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCC
Confidence 344455555555555542 568999999999999999999765 222 4333 1
Q ss_pred -CCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCC----CcEEEEcCCCCChhHHHHhh
Q psy9620 332 -GDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDD----VKFVINFDYPNNSEDYIHRI 388 (453)
Q Consensus 332 -~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~----v~~VI~~d~p~s~~~y~qr~ 388 (453)
..--...|..++..+.+++-.|+|||-.+-.++=-|. ..+.+..+-..+.++++.+.
T Consensus 112 ~~~~i~~~R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~L 173 (655)
T TIGR00631 112 INDEIERLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRL 173 (655)
T ss_pred CChHHHHHHHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHH
Confidence 1112456788899988877778888866666665443 44566666666666665443
No 466
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.60 E-value=10 Score=37.59 Aligned_cols=21 Identities=38% Similarity=0.275 Sum_probs=15.9
Q ss_pred cEEEEecCCCcchhhhhHHHH
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAI 172 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l 172 (453)
-+++++|||+|||....-.+.
T Consensus 225 vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477899999999987654443
No 467
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=69.52 E-value=4.2 Score=36.23 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=15.7
Q ss_pred hcCCcEEEEecCCCcchh
Q psy9620 148 MSGSNMVGVAQTGSGKTL 165 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~ 165 (453)
..|.-+++++|.|||||.
T Consensus 26 ~~Gevv~iiGpSGSGKST 43 (240)
T COG1126 26 EKGEVVVIIGPSGSGKST 43 (240)
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 367888999999999995
No 468
>PRK08939 primosomal protein DnaI; Reviewed
Probab=69.47 E-value=7.3 Score=37.07 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=15.0
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
++.+++.|++|+|||...
T Consensus 156 ~~gl~L~G~~G~GKThLa 173 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL 173 (306)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999543
No 469
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=69.42 E-value=5.2 Score=36.06 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=17.8
Q ss_pred cCCcEEEEecCCCcchhhhhHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAI 172 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l 172 (453)
.|.-+++.+++|+|||...+-.+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~ 45 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAV 45 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999966544333
No 470
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=68.82 E-value=3.6 Score=39.92 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=18.2
Q ss_pred HHHHHhcCCc--EEEEecCCCcchhhh
Q psy9620 143 GWPIAMSGSN--MVGVAQTGSGKTLAY 167 (453)
Q Consensus 143 ~i~~i~~g~d--~li~a~TGsGKT~~~ 167 (453)
.+..+++|.+ +++.++||||||.+.
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm 106 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTM 106 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEe
Confidence 3445567765 567799999999764
No 471
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=68.78 E-value=5.3 Score=43.32 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=16.9
Q ss_pred CcEEEEecCCCcchhhhhHHHHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIV 173 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~ 173 (453)
.+.+|++|||+|||+...+.+.+
T Consensus 437 ghT~I~G~tGaGKTvLl~~llaq 459 (796)
T COG3451 437 GHTLIIGPTGAGKTVLLSFLLAQ 459 (796)
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999654443333
No 472
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=68.57 E-value=5.8 Score=36.73 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHh----cCC-cEEEEecCCCcchhhh
Q psy9620 135 RPTPIQAQGWPIAM----SGS-NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~----~g~-d~li~a~TGsGKT~~~ 167 (453)
.+++.+.+++..+. .+. .++++|++|+|||...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 46666677776543 233 5889999999999654
No 473
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=68.22 E-value=6.6 Score=38.91 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=15.1
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
+++++.+|||+|||..+
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 68999999999999654
No 474
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=68.20 E-value=1.1e+02 Score=29.63 Aligned_cols=149 Identities=15% Similarity=0.214 Sum_probs=94.6
Q ss_pred ceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchh
Q psy9620 232 RQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 311 (453)
Q Consensus 232 ~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~ 311 (453)
.-.+-|..|+++.-+..+...+.... ......+-.+...-|.+.+.+.++...+ .+..+.|-.+..+
T Consensus 89 ~s~L~W~G~Ls~~Q~~as~~l~q~i~------------~k~~~lv~AV~GaGKTEMif~~i~~al~-~G~~vciASPRvD 155 (441)
T COG4098 89 KSVLQWKGTLSPGQKKASNQLVQYIK------------QKEDTLVWAVTGAGKTEMIFQGIEQALN-QGGRVCIASPRVD 155 (441)
T ss_pred cceeeeccccChhHHHHHHHHHHHHH------------hcCcEEEEEecCCCchhhhHHHHHHHHh-cCCeEEEecCccc
Confidence 33788999998776666555443210 1111223333445677777777776654 3679999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-CccCCCCCCCcEEEE--cC-CCCChhHHH
Q psy9620 312 KVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-AARGLDVDDVKFVIN--FD-YPNNSEDYI 385 (453)
Q Consensus 312 ~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~GiDip~v~~VI~--~d-~p~s~~~y~ 385 (453)
-|-+|+..|+.. +..+..+|++.++. |+ ..++|||.= +-+=- ...+++|. .| +|.+.+..+
T Consensus 156 VclEl~~Rlk~aF~~~~I~~Lyg~S~~~--------fr---~plvVaTtHQLlrFk--~aFD~liIDEVDAFP~~~d~~L 222 (441)
T COG4098 156 VCLELYPRLKQAFSNCDIDLLYGDSDSY--------FR---APLVVATTHQLLRFK--QAFDLLIIDEVDAFPFSDDQSL 222 (441)
T ss_pred chHHHHHHHHHhhccCCeeeEecCCchh--------cc---ccEEEEehHHHHHHH--hhccEEEEeccccccccCCHHH
Confidence 999999999875 57888999986643 22 578888852 11111 13344443 33 688888899
Q ss_pred HhhhcccCCCCcceEEEEEcCCC
Q psy9620 386 HRIGRTGRSDNTGTSYTFFTQQN 408 (453)
Q Consensus 386 qr~GRagR~g~~g~~~~~~~~~~ 408 (453)
|-+-+-+|- ...+.++++...
T Consensus 223 ~~Av~~ark--~~g~~IylTATp 243 (441)
T COG4098 223 QYAVKKARK--KEGATIYLTATP 243 (441)
T ss_pred HHHHHHhhc--ccCceEEEecCC
Confidence 988877774 334444445433
No 475
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=68.20 E-value=6.8 Score=35.23 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.0
Q ss_pred cEEEEecCCCcchhhhhH
Q psy9620 152 NMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l 169 (453)
++|+++|.|+|||..+.+
T Consensus 52 h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred eEEEECCCccchhHHHHH
Confidence 689999999999965543
No 476
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=68.16 E-value=3.5 Score=40.87 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=32.2
Q ss_pred CccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 110 NPITEFAEANFPDYVLKEVKRQ---GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 110 ~p~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
.|-.+|++.+-.+...+.+++. -+..|.-++... +...+.+++.+|+|+|||+..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 3445788876665555555543 122222222211 124578999999999999654
No 477
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=68.07 E-value=6.9 Score=35.29 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=15.5
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
..+.+++++++|+|||...
T Consensus 41 ~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999543
No 478
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=68.05 E-value=3.8 Score=39.68 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=18.3
Q ss_pred HHHHHhcCCc--EEEEecCCCcchhhh
Q psy9620 143 GWPIAMSGSN--MVGVAQTGSGKTLAY 167 (453)
Q Consensus 143 ~i~~i~~g~d--~li~a~TGsGKT~~~ 167 (453)
.+..+++|.+ ++..++||||||.+.
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm 105 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTM 105 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEE
Confidence 3445567775 567799999999764
No 479
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=67.93 E-value=8.8 Score=39.50 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=35.1
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
.|.-+++.+++|+|||...+--+...+.. .+-.+|++ -+-+-..|+.+.+..++.
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-------~ge~~lyi-s~ee~~~~i~~~~~~~g~ 84 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKR-------FDEPGVFV-TFEESPEDIIRNVASFGW 84 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-------cCCCEEEE-EccCCHHHHHHHHHHcCC
Confidence 46788999999999996544333333332 13346666 444566777777777653
No 480
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=67.56 E-value=2.9 Score=38.17 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=15.0
Q ss_pred CCcEEEEecCCCcchhh
Q psy9620 150 GSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~ 166 (453)
-+++|+.+|+|+|||..
T Consensus 151 PknVLFyGppGTGKTm~ 167 (368)
T COG1223 151 PKNVLFYGPPGTGKTMM 167 (368)
T ss_pred cceeEEECCCCccHHHH
Confidence 37999999999999954
No 481
>PRK06893 DNA replication initiation factor; Validated
Probab=67.49 E-value=6.5 Score=35.64 Aligned_cols=18 Identities=17% Similarity=-0.003 Sum_probs=14.2
Q ss_pred CcEEEEecCCCcchhhhh
Q psy9620 151 SNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~ 168 (453)
..+++++|+|+|||....
T Consensus 40 ~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 346899999999996543
No 482
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=67.43 E-value=1.1e+02 Score=28.67 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=23.6
Q ss_pred chhHHHHHHHHHHhcCCeEEEEcCCCC
Q psy9620 309 TKRKVDKITKSIQNYGWAAVGIHGDKS 335 (453)
Q Consensus 309 s~~~~~~l~~~L~~~~~~~~~~h~~~~ 335 (453)
|...|+.|++.|++.++.+...|-++.
T Consensus 256 SV~iae~La~~L~~~~~~v~v~HRdl~ 282 (284)
T PF03668_consen 256 SVAIAERLAERLREKGYTVVVRHRDLE 282 (284)
T ss_pred HHHHHHHHHHHHHhcCCcceEEcCCCC
Confidence 577899999999999999988898775
No 483
>PRK09354 recA recombinase A; Provisional
Probab=67.41 E-value=9.1 Score=37.04 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=29.7
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ 200 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~ 200 (453)
.|+-+.+.+|+|||||...+..+..... .+..++++..-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~--------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK--------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--------cCCcEEEECCccchHH
Confidence 3567889999999999765544443332 3556888877666554
No 484
>KOG3875|consensus
Probab=67.39 E-value=9.3 Score=35.55 Aligned_cols=8 Identities=13% Similarity=0.194 Sum_probs=3.3
Q ss_pred HHHHHHHh
Q psy9620 141 AQGWPIAM 148 (453)
Q Consensus 141 ~~~i~~i~ 148 (453)
.++|....
T Consensus 200 ~k~~~~~e 207 (362)
T KOG3875|consen 200 EKLWAEFE 207 (362)
T ss_pred HHHHHHhc
Confidence 34444443
No 485
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=67.31 E-value=23 Score=37.91 Aligned_cols=54 Identities=13% Similarity=0.069 Sum_probs=44.7
Q ss_pred CCcEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV 359 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 359 (453)
...++|.++|..-|.+.++.+.. .++.+..+.++++..+|..... ++|+++|..
T Consensus 97 G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 97 GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 45799999999988888877664 4889999999999887766653 699999987
No 486
>KOG0989|consensus
Probab=67.10 E-value=5.8 Score=37.22 Aligned_cols=32 Identities=19% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHhc------CCcEEEEecCCCcchhhhhHHH
Q psy9620 140 QAQGWPIAMS------GSNMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 140 Q~~~i~~i~~------g~d~li~a~TGsGKT~~~~l~~ 171 (453)
|..++..+.+ .-++|+.+|.|+|||.++++.+
T Consensus 41 Qe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafa 78 (346)
T KOG0989|consen 41 QEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFA 78 (346)
T ss_pred hHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHH
No 487
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=66.90 E-value=4.1 Score=39.17 Aligned_cols=26 Identities=35% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCc--EEEEecCCCcchhh
Q psy9620 141 AQGWPIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 141 ~~~i~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
...+..+++|.| ++..++||||||.+
T Consensus 74 ~plv~~~~~G~n~~i~ayGqtGSGKTyT 101 (322)
T cd01367 74 KPLIPHVFEGGVATCFAYGQTGSGKTYT 101 (322)
T ss_pred HHHHHHHhCCCceEEEeccCCCCCCceE
No 488
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=66.84 E-value=31 Score=32.62 Aligned_cols=193 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred EEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCCCCceE
Q psy9620 155 GVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQPDRQV 234 (453)
Q Consensus 155 i~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~q~ 234 (453)
|+|.||.|---++-..+...+ +-.++|-.=......|..+.++--. .+-++..+..|
T Consensus 106 iIAETGAGQHGVAtAta~A~f----------gl~C~iYMGa~Dv~RQ~~NVfRM~L--lGA~V~pV~sG----------- 162 (396)
T COG0133 106 IIAETGAGQHGVATATAAALF----------GLECVIYMGAEDVERQALNVFRMRL--LGAEVVPVTSG----------- 162 (396)
T ss_pred EEeecCCCcccHHHHHHHHHh----------CCceEEEecchhhhhcccchhhhhh--cCceEEEeccC-----------
Q ss_pred EEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHH
Q psy9620 235 LMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVD 314 (453)
Q Consensus 235 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~ 314 (453)
|.|+...+.+..+.+..+......---...-++.....+...+..--.+.-.++++..-.-+..-+-+.--..+.+-
T Consensus 163 ---s~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG 239 (396)
T COG0133 163 ---SGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIG 239 (396)
T ss_pred ---CchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhh
Q ss_pred HHHHHHHhcCCe------------------------EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 315 KITKSIQNYGWA------------------------AVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 315 ~l~~~L~~~~~~------------------------~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
..+.++...+.. +.++||.++. +...+--=++-|-.++-|+|.|.|-
T Consensus 240 ~F~~Fi~d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~ty---------llQd~~GQi~e~hSISAGLDYPgVG 310 (396)
T COG0133 240 IFHPFIDDESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTY---------LLQDEDGQILESHSISAGLDYPGVG 310 (396)
T ss_pred hcccccCCCCceEEEeccCcCccCCCccceeecCCCceeeecccce---------eeEcCCCCEeeeeeeccCCCCCCCC
Q ss_pred EEEEcCCCCChhHHHHhhhcc
Q psy9620 371 FVINFDYPNNSEDYIHRIGRT 391 (453)
Q Consensus 371 ~VI~~d~p~s~~~y~qr~GRa 391 (453)
| ...|++-+||+
T Consensus 311 -------P--eha~l~~~gRa 322 (396)
T COG0133 311 -------P--EHAYLKDIGRA 322 (396)
T ss_pred -------h--hHHHHHhcCce
No 489
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=66.52 E-value=22 Score=35.22 Aligned_cols=103 Identities=19% Similarity=0.188 Sum_probs=0.0
Q ss_pred CcEEEEecCCCcchhhhhHHHHHHhhhc------------CCCCCCCCcEEEEEcCC-----HHHHHHHHHHHHHhcCCC
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIVHINHQ------------SQLKPGDGPIVLVLAPT-----RELAQQIQEVARDFGSST 213 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~~~~~~------------~~~~~~~~~~vlil~Pt-----r~La~q~~~~~~~~~~~~ 213 (453)
+.+|+.+|.|+|||..+..-+-..+... .....+..|.+.++.|. .+-+.++.+.+.......
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~ 116 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTG 116 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccC
Q ss_pred CceEEEEeCCccCCCC------------CCceEEEEeccCcHHHHHHHHHhh
Q psy9620 214 YLRSTCVYGGASKGPQ------------PDRQVLMWSATWPREVQKLAEDFL 253 (453)
Q Consensus 214 ~~~~~~~~gg~~~~~~------------~~~q~v~~SAT~~~~~~~~~~~~~ 253 (453)
..++..+......... +..-++++.+|-+..+..-+..-+
T Consensus 117 ~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc 168 (394)
T PRK07940 117 RWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRC 168 (394)
T ss_pred CcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhC
No 490
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=66.40 E-value=16 Score=28.44 Aligned_cols=54 Identities=7% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCe--EEEEcCCCCHHHH
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA--AVGIHGDKSQQER 339 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~--~~~~h~~~~~~~r 339 (453)
..+...+..+......+++|||.+-..+...+..|...|+. +..+.|++..-.+
T Consensus 52 ~~l~~~~~~l~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~ 107 (109)
T cd01533 52 AELVLRVGELAPDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTL 107 (109)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHh
No 491
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=66.36 E-value=3.3 Score=39.62 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=0.0
Q ss_pred hcCCcEEEEecCCCcchhhhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~ 168 (453)
+.|+-+|+.+|+|+|||..++
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~ 83 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAM 83 (450)
T ss_pred ccccEEEEECCCCCcHHHHHH
No 492
>KOG3915|consensus
Probab=66.33 E-value=5.6 Score=38.90 Aligned_cols=29 Identities=59% Similarity=1.022 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy9620 19 TSGGGGYGGSSRSGGYGGGYGGGSGGGRF 47 (453)
Q Consensus 19 ~~~~~g~g~~~~~g~~g~~~gg~~g~g~~ 47 (453)
.++||++++++++++-.+++|+++++|++
T Consensus 63 ~~~g~~g~~s~~g~~s~~~gg~~~~~g~g 91 (641)
T KOG3915|consen 63 TGGGGGGGGSGGGGGSSGNGGGGGGGGGG 91 (641)
T ss_pred ccCCCCCCCCCCCccccCCCCCCCCCCCc
No 493
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=66.16 E-value=4.1 Score=39.42 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=0.0
Q ss_pred hcCCcEEEEecCCCcchhhhhHHH
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~l~~ 171 (453)
+.|+-+|+.+|+|||||..++.-+
T Consensus 48 ~aGr~iLiaGppGtGKTAlA~~ia 71 (398)
T PF06068_consen 48 IAGRAILIAGPPGTGKTALAMAIA 71 (398)
T ss_dssp -TT-EEEEEE-TTSSHHHHHHHHH
T ss_pred ccCcEEEEeCCCCCCchHHHHHHH
No 494
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=66.09 E-value=4 Score=40.59 Aligned_cols=24 Identities=42% Similarity=0.462 Sum_probs=0.0
Q ss_pred hcCCcEEEEecCCCcchhhhhHHH
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~l~~ 171 (453)
+...++++.+|||+|||+.+-..+
T Consensus 106 ~~~~~iLl~Gp~GtGKT~lAr~lA 129 (412)
T PRK05342 106 LQKSNILLIGPTGSGKTLLAQTLA 129 (412)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHH
No 495
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=66.03 E-value=13 Score=39.80 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=0.0
Q ss_pred cCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCC--CCcceEEE-----------EEcCCChHHHHH
Q psy9620 348 NGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRS--DNTGTSYT-----------FFTQQNSRQAKD 414 (453)
Q Consensus 348 ~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~--g~~g~~~~-----------~~~~~~~~~~~~ 414 (453)
+...+.|++--++-+|.|-|+|-.++-.....|..+=+|.+||.-|- ++.|.-+. +++..+..+++.
T Consensus 481 d~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~ 560 (985)
T COG3587 481 DEPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKA 560 (985)
T ss_pred CCcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHH
Q ss_pred HHHHHHhcC
Q psy9620 415 LIDVLTESN 423 (453)
Q Consensus 415 l~~~l~~~~ 423 (453)
|..-++...
T Consensus 561 LqkEI~~~s 569 (985)
T COG3587 561 LQKEINDES 569 (985)
T ss_pred HHHHHHHhh
No 496
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=65.97 E-value=4.6 Score=39.06 Aligned_cols=26 Identities=38% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCc--EEEEecCCCcchhh
Q psy9620 141 AQGWPIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 141 ~~~i~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
...+..+++|.| ++..++||||||.+
T Consensus 64 ~p~v~~~~~G~n~ti~aYGqTGSGKTyT 91 (337)
T cd01373 64 KPLVEDCLSGYNGSIFAYGQTGSGKTYT 91 (337)
T ss_pred HHHHHHHhCCCceeEEEeCCCCCCceEE
No 497
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=65.97 E-value=6.8 Score=37.66 Aligned_cols=34 Identities=24% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCC--cEEEEecCCCcchhhhhHHH
Q psy9620 138 PIQAQGWPIAMSGS--NMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 138 ~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~l~~ 171 (453)
.+-......+.+++ .+++.+|+|+|||......+
T Consensus 22 ~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~ 57 (337)
T PRK12402 22 EVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALA 57 (337)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHH
No 498
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=65.92 E-value=22 Score=36.23 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh-----cC----CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 138 PIQAQGWPIAM-----SG----SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 138 ~~Q~~~i~~i~-----~g----~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
|+|.-++-.++ .+ +.+++.-+=+.|||......++..+.-... .++.+++++++++-|..+++.++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~----~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGE----PGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCc----cCceEEEEeCCHHHHHHHHHHHHH
Q ss_pred h
Q psy9620 209 F 209 (453)
Q Consensus 209 ~ 209 (453)
+
T Consensus 77 ~ 77 (477)
T PF03354_consen 77 M 77 (477)
T ss_pred H
No 499
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=65.83 E-value=4.2 Score=36.17 Aligned_cols=19 Identities=37% Similarity=0.361 Sum_probs=0.0
Q ss_pred EEEEecCCCcchhhhhHHH
Q psy9620 153 MVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l~~ 171 (453)
.++.+|||+|||..++..+
T Consensus 4 ~~i~GpT~tGKt~~ai~lA 22 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALA 22 (233)
T ss_dssp EEEE-STTSSHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHH
No 500
>CHL00181 cbbX CbbX; Provisional
Probab=65.74 E-value=4 Score=38.48 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=0.0
Q ss_pred CCcEEEEecCCCcchhhhhHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~ 171 (453)
+.++++.+|+|+|||..+..-+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Done!