Query psy9620
Match_columns 453
No_of_seqs 386 out of 2858
Neff 9.6
Searched_HMMs 29240
Date Sat Aug 17 00:26:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.8E-59 6.2E-64 469.0 37.4 328 101-433 43-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 2.3E-53 7.7E-58 423.6 36.0 332 103-437 4-413 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 7.4E-50 2.5E-54 397.4 27.2 313 108-429 32-405 (410)
4 3eiq_A Eukaryotic initiation f 100.0 4.8E-49 1.6E-53 391.9 25.9 317 108-433 35-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 6E-48 2.1E-52 382.3 32.0 312 110-431 18-389 (400)
6 3i5x_A ATP-dependent RNA helic 100.0 5.8E-48 2E-52 399.2 31.3 300 120-420 79-462 (563)
7 1xti_A Probable ATP-dependent 100.0 1.3E-47 4.5E-52 378.6 31.3 309 113-429 8-380 (391)
8 3fht_A ATP-dependent RNA helic 100.0 3.8E-47 1.3E-51 377.8 34.9 310 109-427 21-400 (412)
9 3pey_A ATP-dependent RNA helic 100.0 1.8E-46 6.1E-51 370.7 34.6 301 111-420 3-370 (395)
10 1hv8_A Putative ATP-dependent 100.0 5.9E-46 2E-50 363.3 32.7 300 112-426 5-364 (367)
11 3sqw_A ATP-dependent RNA helic 100.0 3.6E-46 1.2E-50 386.3 31.5 299 120-419 28-410 (579)
12 3fmp_B ATP-dependent RNA helic 100.0 6.9E-48 2.4E-52 390.8 17.8 308 111-427 90-467 (479)
13 1fuu_A Yeast initiation factor 100.0 3E-48 1E-52 383.5 14.5 317 108-433 16-392 (394)
14 2v1x_A ATP-dependent DNA helic 100.0 2E-44 7E-49 370.7 28.3 287 112-416 18-383 (591)
15 1oyw_A RECQ helicase, ATP-depe 100.0 1.2E-43 4.2E-48 361.3 29.3 281 113-417 2-353 (523)
16 3fho_A ATP-dependent RNA helic 100.0 3.6E-45 1.2E-49 372.5 14.8 312 108-428 114-492 (508)
17 2z0m_A 337AA long hypothetical 100.0 4.1E-43 1.4E-47 339.2 28.5 276 120-420 1-335 (337)
18 2zj8_A DNA helicase, putative 100.0 1.9E-39 6.6E-44 344.1 25.4 285 114-408 2-388 (720)
19 2va8_A SSO2462, SKI2-type heli 100.0 8.3E-39 2.8E-43 339.3 28.3 287 112-408 7-409 (715)
20 3oiy_A Reverse gyrase helicase 100.0 3.5E-39 1.2E-43 320.9 23.4 267 124-420 10-376 (414)
21 2p6r_A Afuhel308 helicase; pro 100.0 5.4E-39 1.8E-43 339.7 21.7 278 114-408 2-389 (702)
22 3l9o_A ATP-dependent RNA helic 100.0 2.4E-38 8.3E-43 345.2 26.6 280 113-407 162-597 (1108)
23 2ykg_A Probable ATP-dependent 100.0 3.9E-39 1.3E-43 341.4 16.5 283 126-413 4-522 (696)
24 4a2p_A RIG-I, retinoic acid in 100.0 2E-37 6.8E-42 319.8 24.7 273 133-410 5-511 (556)
25 4f92_B U5 small nuclear ribonu 100.0 4.6E-38 1.6E-42 354.2 20.1 300 109-416 897-1317(1724)
26 3tbk_A RIG-I helicase domain; 100.0 9.5E-38 3.3E-42 322.0 20.0 274 135-413 4-513 (555)
27 1tf5_A Preprotein translocase 100.0 1.2E-37 4E-42 321.3 18.7 313 72-409 23-547 (844)
28 2xgj_A ATP-dependent RNA helic 100.0 4.3E-36 1.5E-40 324.8 31.2 269 130-415 82-508 (1010)
29 1gku_B Reverse gyrase, TOP-RG; 100.0 2.3E-37 8E-42 337.5 19.4 267 130-421 53-468 (1054)
30 4a2q_A RIG-I, retinoic acid in 100.0 7.9E-37 2.7E-41 327.2 23.2 275 131-410 244-752 (797)
31 1gm5_A RECG; helicase, replica 100.0 1.8E-37 6.2E-42 325.7 17.5 286 122-424 356-713 (780)
32 2whx_A Serine protease/ntpase/ 100.0 1.4E-37 4.7E-42 320.9 14.9 276 118-428 155-502 (618)
33 4f92_B U5 small nuclear ribonu 100.0 1.6E-36 5.5E-41 341.7 24.4 282 132-416 76-482 (1724)
34 4ddu_A Reverse gyrase; topoiso 100.0 1.3E-35 4.4E-40 323.7 25.7 263 130-420 74-503 (1104)
35 4a2w_A RIG-I, retinoic acid in 100.0 2.3E-35 7.8E-40 319.3 26.0 273 131-409 244-751 (936)
36 2eyq_A TRCF, transcription-rep 100.0 2.1E-34 7.1E-39 316.0 30.7 272 119-407 587-922 (1151)
37 2jlq_A Serine protease subunit 100.0 3.7E-36 1.3E-40 301.3 15.0 264 132-430 1-337 (451)
38 2wv9_A Flavivirin protease NS2 100.0 1.7E-36 5.7E-41 314.7 12.1 258 128-419 203-548 (673)
39 4a4z_A Antiviral helicase SKI2 100.0 1.4E-34 4.7E-39 313.1 27.2 258 132-405 37-490 (997)
40 1yks_A Genome polyprotein [con 100.0 3.7E-36 1.3E-40 299.9 13.7 249 146-428 4-323 (440)
41 4gl2_A Interferon-induced heli 100.0 1.8E-35 6.1E-40 313.5 19.7 119 285-406 383-517 (699)
42 1wp9_A ATP-dependent RNA helic 100.0 1.8E-34 6.2E-39 292.1 26.0 267 135-410 9-478 (494)
43 2xau_A PRE-mRNA-splicing facto 100.0 1E-34 3.5E-39 306.7 19.1 287 109-409 68-445 (773)
44 2fsf_A Preprotein translocase 100.0 7E-35 2.4E-39 299.8 16.7 129 278-409 420-585 (853)
45 2oca_A DAR protein, ATP-depend 100.0 2.3E-34 7.8E-39 293.8 17.6 264 134-405 112-453 (510)
46 1nkt_A Preprotein translocase 100.0 3.4E-33 1.2E-37 287.7 25.8 265 131-409 108-619 (922)
47 2z83_A Helicase/nucleoside tri 100.0 2E-34 6.9E-39 289.1 14.4 230 144-407 15-313 (459)
48 2fwr_A DNA repair protein RAD2 100.0 3.1E-33 1.1E-37 282.7 15.2 250 135-407 93-454 (472)
49 2v6i_A RNA helicase; membrane, 100.0 1.2E-32 3.9E-37 274.1 18.5 216 149-404 1-288 (431)
50 3jux_A Protein translocase sub 100.0 4.2E-31 1.4E-35 266.5 26.1 173 231-409 409-589 (822)
51 3o8b_A HCV NS3 protease/helica 100.0 2.9E-33 9.9E-38 286.3 10.2 230 135-411 217-518 (666)
52 2p6n_A ATP-dependent RNA helic 100.0 1.7E-31 6E-36 235.5 18.0 181 250-435 9-190 (191)
53 2jgn_A DBX, DDX3, ATP-dependen 100.0 1.1E-30 3.7E-35 229.5 19.1 168 267-436 15-182 (185)
54 3rc3_A ATP-dependent RNA helic 100.0 3.3E-30 1.1E-34 266.8 21.0 234 143-414 148-451 (677)
55 3h1t_A Type I site-specific re 100.0 1.9E-29 6.5E-34 261.8 20.3 270 135-406 178-557 (590)
56 2hjv_A ATP-dependent RNA helic 100.0 1E-28 3.6E-33 212.6 19.0 152 268-422 6-157 (163)
57 1fuk_A Eukaryotic initiation f 100.0 2.6E-29 9E-34 216.8 14.8 159 271-432 3-162 (165)
58 1t5i_A C_terminal domain of A 100.0 6.9E-29 2.4E-33 215.4 15.5 160 270-432 4-164 (172)
59 3fe2_A Probable ATP-dependent 100.0 1.7E-28 5.9E-33 225.5 17.4 177 88-264 3-240 (242)
60 2rb4_A ATP-dependent RNA helic 100.0 3.1E-28 1E-32 212.3 16.7 154 269-425 5-165 (175)
61 3dmq_A RNA polymerase-associat 100.0 1.2E-27 4.1E-32 259.3 23.1 134 284-420 490-626 (968)
62 3eaq_A Heat resistant RNA depe 100.0 2.7E-27 9.1E-32 212.6 17.9 148 272-422 6-153 (212)
63 1z63_A Helicase of the SNF2/RA 99.9 2.1E-26 7.2E-31 234.3 25.6 135 285-422 327-466 (500)
64 3i32_A Heat resistant RNA depe 99.9 1.1E-26 3.7E-31 218.4 17.4 149 271-422 2-150 (300)
65 1c4o_A DNA nucleotide excision 99.9 1.7E-24 5.9E-29 225.5 29.1 117 299-416 438-559 (664)
66 3dkp_A Probable ATP-dependent 99.9 1E-25 3.4E-30 207.4 16.6 168 92-263 3-242 (245)
67 2yjt_D ATP-dependent RNA helic 99.9 9.7E-28 3.3E-32 208.0 0.0 149 271-422 3-152 (170)
68 1z3i_X Similar to RAD54-like; 99.9 6.4E-24 2.2E-28 221.4 26.4 120 288-407 404-528 (644)
69 2d7d_A Uvrabc system protein B 99.9 2.4E-23 8.1E-28 216.8 28.9 115 299-414 444-563 (661)
70 3iuy_A Probable ATP-dependent 99.9 1.3E-24 4.4E-29 197.8 16.4 152 108-260 14-227 (228)
71 3fmo_B ATP-dependent RNA helic 99.9 3.3E-24 1.1E-28 202.9 19.5 147 111-262 90-298 (300)
72 3mwy_W Chromo domain-containin 99.9 2.5E-23 8.6E-28 222.2 27.0 123 284-407 557-684 (800)
73 1wrb_A DJVLGB; RNA helicase, D 99.9 6.6E-25 2.3E-29 203.0 12.9 164 102-265 9-243 (253)
74 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 4E-24 1.4E-28 230.2 20.4 263 135-405 271-707 (1038)
75 3bor_A Human initiation factor 99.9 3.7E-24 1.3E-28 195.9 15.6 150 108-262 25-235 (237)
76 1qde_A EIF4A, translation init 99.9 1.1E-23 3.9E-28 191.0 17.8 151 108-263 9-218 (224)
77 2pl3_A Probable ATP-dependent 99.9 1E-23 3.4E-28 192.9 16.3 153 109-262 21-233 (236)
78 3ber_A Probable ATP-dependent 99.9 5.3E-24 1.8E-28 196.2 14.4 148 109-261 39-247 (249)
79 1q0u_A Bstdead; DEAD protein, 99.9 7.5E-24 2.6E-28 191.5 14.8 148 111-263 2-213 (219)
80 2oxc_A Probable ATP-dependent 99.9 1.1E-23 3.7E-28 191.9 14.8 149 108-261 19-228 (230)
81 1vec_A ATP-dependent RNA helic 99.9 3.5E-23 1.2E-27 185.2 16.0 142 113-259 3-205 (206)
82 1t6n_A Probable ATP-dependent 99.9 5.4E-23 1.9E-27 185.9 14.6 147 109-260 10-219 (220)
83 2gxq_A Heat resistant RNA depe 99.9 1.5E-22 5.2E-27 181.1 16.7 144 114-261 2-205 (207)
84 3ly5_A ATP-dependent RNA helic 99.9 2.3E-22 7.9E-27 186.6 14.2 143 113-256 52-257 (262)
85 2ipc_A Preprotein translocase 99.9 1E-20 3.4E-25 194.7 23.1 83 131-224 76-158 (997)
86 1z5z_A Helicase of the SNF2/RA 99.8 4.8E-19 1.6E-23 164.3 12.8 128 280-408 93-225 (271)
87 2vl7_A XPD; helicase, unknown 99.7 7.3E-16 2.5E-20 157.3 17.4 115 286-406 370-520 (540)
88 4a15_A XPD helicase, ATP-depen 99.6 5.6E-15 1.9E-19 152.6 18.2 116 287-406 435-583 (620)
89 3crv_A XPD/RAD3 related DNA he 99.6 8.2E-14 2.8E-18 142.6 22.3 79 132-222 1-83 (551)
90 1rif_A DAR protein, DNA helica 99.5 1.2E-13 4.2E-18 129.2 10.4 86 135-227 113-198 (282)
91 3llm_A ATP-dependent RNA helic 99.4 2.4E-12 8.3E-17 117.0 13.0 74 133-209 59-132 (235)
92 2fz4_A DNA repair protein RAD2 99.3 1.1E-11 3.7E-16 112.7 13.1 77 134-225 92-169 (237)
93 3b6e_A Interferon-induced heli 99.3 1.9E-12 6.5E-17 115.8 7.4 93 133-228 31-124 (216)
94 1w36_D RECD, exodeoxyribonucle 97.9 8.9E-06 3.1E-10 83.8 6.1 66 137-208 151-218 (608)
95 3hgt_A HDA1 complex subunit 3; 97.3 0.0031 1.1E-07 58.6 12.8 147 281-435 107-263 (328)
96 4b3f_X DNA-binding protein smu 97.1 0.001 3.5E-08 69.1 8.5 69 134-210 188-257 (646)
97 2gk6_A Regulator of nonsense t 97.1 0.0011 3.8E-08 68.5 8.3 70 133-209 178-247 (624)
98 2xzl_A ATP-dependent helicase 96.9 0.0015 5.2E-08 69.1 8.1 71 133-210 358-428 (802)
99 2wjy_A Regulator of nonsense t 96.8 0.0028 9.5E-08 67.1 8.3 70 133-209 354-423 (800)
100 3lfu_A DNA helicase II; SF1 he 96.6 0.0033 1.1E-07 65.2 7.9 71 134-210 8-78 (647)
101 3e1s_A Exodeoxyribonuclease V, 96.6 0.0039 1.3E-07 63.5 7.9 63 135-205 189-251 (574)
102 3upu_A ATP-dependent DNA helic 96.5 0.0043 1.5E-07 61.5 7.6 69 131-206 21-94 (459)
103 1uaa_A REP helicase, protein ( 96.0 0.0084 2.9E-07 62.5 6.4 70 135-210 2-71 (673)
104 1pjr_A PCRA; DNA repair, DNA r 95.9 0.014 4.8E-07 61.3 8.0 70 134-209 10-79 (724)
105 3u4q_A ATP-dependent helicase/ 95.5 0.021 7E-07 63.7 7.4 70 135-208 10-79 (1232)
106 1gm5_A RECG; helicase, replica 95.2 0.041 1.4E-06 58.0 8.2 75 300-374 417-496 (780)
107 3oiy_A Reverse gyrase helicase 94.5 0.09 3.1E-06 51.0 8.2 76 299-374 63-145 (414)
108 2o0j_A Terminase, DNA packagin 94.3 0.13 4.6E-06 49.2 8.7 70 135-210 163-232 (385)
109 3cpe_A Terminase, DNA packagin 94.1 0.16 5.3E-06 52.0 9.2 73 135-213 163-235 (592)
110 1t6n_A Probable ATP-dependent 93.3 0.43 1.5E-05 41.4 9.6 71 301-374 83-164 (220)
111 4ddu_A Reverse gyrase; topoiso 92.3 0.38 1.3E-05 52.8 9.2 76 299-374 120-202 (1104)
112 2eyq_A TRCF, transcription-rep 92.3 0.3 1E-05 53.9 8.4 74 300-373 652-730 (1151)
113 3ec2_A DNA replication protein 92.0 0.21 7.2E-06 42.0 5.6 31 137-167 16-55 (180)
114 3fe2_A Probable ATP-dependent 91.1 1.1 3.8E-05 39.5 9.7 71 300-374 102-182 (242)
115 1oyw_A RECQ helicase, ATP-depe 91.0 0.46 1.6E-05 47.6 7.6 59 300-358 65-123 (523)
116 2v1x_A ATP-dependent DNA helic 90.4 0.46 1.6E-05 48.4 7.1 59 300-358 84-144 (591)
117 3ber_A Probable ATP-dependent 89.6 1.7 5.8E-05 38.6 9.5 71 300-374 111-192 (249)
118 3vkw_A Replicase large subunit 89.4 0.32 1.1E-05 47.2 4.7 45 152-209 163-207 (446)
119 2gxq_A Heat resistant RNA depe 88.9 1.8 6.3E-05 36.8 9.0 72 299-374 71-150 (207)
120 3co5_A Putative two-component 88.8 0.3 1E-05 39.4 3.5 20 147-166 24-43 (143)
121 3iuy_A Probable ATP-dependent 88.7 1.1 3.6E-05 39.2 7.4 72 299-374 93-173 (228)
122 1xti_A Probable ATP-dependent 88.3 2.2 7.4E-05 40.4 9.9 72 300-374 76-158 (391)
123 3bor_A Human initiation factor 88.3 1.3 4.6E-05 38.9 7.8 73 299-374 97-179 (237)
124 1vec_A ATP-dependent RNA helic 87.9 2.5 8.6E-05 35.9 9.2 71 300-374 71-152 (206)
125 3n70_A Transport activator; si 87.8 0.33 1.1E-05 39.3 3.1 20 148-167 22-41 (145)
126 1wrb_A DJVLGB; RNA helicase, D 87.4 9.9 0.00034 33.4 13.2 70 301-374 101-180 (253)
127 3ly5_A ATP-dependent RNA helic 87.0 2.5 8.5E-05 37.8 8.9 71 300-374 126-207 (262)
128 2pl3_A Probable ATP-dependent 85.1 2 6.8E-05 37.6 7.1 70 300-374 97-177 (236)
129 1qde_A EIF4A, translation init 84.6 1.8 6.1E-05 37.5 6.5 82 288-374 69-161 (224)
130 2oxc_A Probable ATP-dependent 84.4 3 0.0001 36.3 7.9 81 289-374 80-172 (230)
131 2dr3_A UPF0273 protein PH0284; 83.4 0.99 3.4E-05 39.7 4.4 52 149-209 22-73 (247)
132 1e9r_A Conjugal transfer prote 82.6 0.8 2.7E-05 44.6 3.7 44 149-200 52-95 (437)
133 1wp9_A ATP-dependent RNA helic 82.3 3.2 0.00011 40.2 8.0 72 298-374 50-131 (494)
134 2eyu_A Twitching motility prot 82.0 0.75 2.6E-05 41.4 3.0 21 147-167 22-42 (261)
135 3b85_A Phosphate starvation-in 81.9 1.4 4.9E-05 38.0 4.6 33 135-167 7-39 (208)
136 2w58_A DNAI, primosome compone 81.1 2.3 7.8E-05 36.2 5.6 17 151-167 55-71 (202)
137 3hws_A ATP-dependent CLP prote 80.8 1.7 5.7E-05 41.1 5.1 19 149-167 50-68 (363)
138 3dmn_A Putative DNA helicase; 80.7 22 0.00074 29.3 11.5 77 285-377 47-123 (174)
139 2oap_1 GSPE-2, type II secreti 80.4 1.6 5.4E-05 43.5 4.9 39 126-166 237-276 (511)
140 4b4t_M 26S protease regulatory 80.0 0.65 2.2E-05 45.1 1.9 55 109-166 174-231 (434)
141 1xx6_A Thymidine kinase; NESG, 80.0 1.3 4.6E-05 37.6 3.7 39 150-196 8-46 (191)
142 2b8t_A Thymidine kinase; deoxy 79.3 1.4 4.8E-05 38.5 3.7 40 149-196 11-50 (223)
143 2orw_A Thymidine kinase; TMTK, 78.7 1.5 5E-05 37.1 3.5 39 150-196 3-41 (184)
144 2qgz_A Helicase loader, putati 78.6 2.7 9.2E-05 38.7 5.6 19 150-168 152-170 (308)
145 2i4i_A ATP-dependent RNA helic 78.5 7.8 0.00027 36.8 9.2 70 301-374 102-181 (417)
146 1gku_B Reverse gyrase, TOP-RG; 78.3 3.7 0.00013 44.8 7.4 74 299-374 98-181 (1054)
147 3h4m_A Proteasome-activating n 78.1 0.91 3.1E-05 41.1 2.2 55 111-167 12-68 (285)
148 3hjh_A Transcription-repair-co 78.0 3.2 0.00011 40.9 6.2 52 149-211 13-64 (483)
149 3tbk_A RIG-I helicase domain; 78.0 2.8 9.4E-05 41.8 5.9 71 300-374 52-133 (555)
150 3jvv_A Twitching mobility prot 77.7 1.8 6.3E-05 40.8 4.2 18 149-166 122-139 (356)
151 1s2m_A Putative ATP-dependent 77.7 8.9 0.0003 36.2 9.3 71 300-374 89-169 (400)
152 3fmo_B ATP-dependent RNA helic 77.6 4.5 0.00015 37.0 6.8 80 288-374 149-241 (300)
153 4a2p_A RIG-I, retinoic acid in 77.2 3.7 0.00013 40.9 6.6 71 300-374 55-136 (556)
154 2zts_A Putative uncharacterize 76.8 1.5 5.2E-05 38.5 3.3 53 149-209 29-81 (251)
155 4a2q_A RIG-I, retinoic acid in 76.8 5.1 0.00017 42.3 7.8 71 300-374 296-377 (797)
156 1hv8_A Putative ATP-dependent 76.7 8.3 0.00028 35.7 8.6 79 291-374 65-153 (367)
157 3nbx_X ATPase RAVA; AAA+ ATPas 76.0 2.3 7.8E-05 42.2 4.5 29 138-166 29-57 (500)
158 2j0s_A ATP-dependent RNA helic 75.8 11 0.00038 35.7 9.4 72 299-374 104-185 (410)
159 3nwn_A Kinesin-like protein KI 75.8 1.6 5.4E-05 41.2 3.1 24 143-166 96-121 (359)
160 1ofh_A ATP-dependent HSL prote 75.5 2.8 9.6E-05 38.2 4.8 19 149-167 49-67 (310)
161 2kjq_A DNAA-related protein; s 75.4 1.2 4.2E-05 36.1 2.0 19 149-167 35-53 (149)
162 3dkp_A Probable ATP-dependent 75.3 3 0.0001 36.7 4.7 84 288-374 84-181 (245)
163 2gza_A Type IV secretion syste 75.0 1.6 5.3E-05 41.4 2.9 20 147-166 172-191 (361)
164 2bjv_A PSP operon transcriptio 74.9 1.8 6.1E-05 38.7 3.2 19 149-167 28-46 (265)
165 2p65_A Hypothetical protein PF 74.9 4.3 0.00015 33.4 5.5 18 150-167 43-60 (187)
166 3cf0_A Transitional endoplasmi 74.7 3.4 0.00012 37.8 5.1 56 111-167 10-66 (301)
167 2zpa_A Uncharacterized protein 74.5 2.6 9E-05 43.1 4.6 60 135-205 175-236 (671)
168 1u0j_A DNA replication protein 74.4 4.7 0.00016 36.2 5.7 44 122-168 73-122 (267)
169 1tue_A Replication protein E1; 73.8 2.9 9.8E-05 36.0 4.0 44 122-167 28-75 (212)
170 1fuu_A Yeast initiation factor 73.7 8.6 0.00029 36.1 7.9 82 288-374 76-168 (394)
171 1kgd_A CASK, peripheral plasma 73.6 1.5 5E-05 36.8 2.1 19 149-167 4-22 (180)
172 2db3_A ATP-dependent RNA helic 73.5 5.5 0.00019 38.5 6.5 71 300-374 129-209 (434)
173 1p9r_A General secretion pathw 73.4 2.2 7.5E-05 41.2 3.6 28 139-166 154-183 (418)
174 3eiq_A Eukaryotic initiation f 73.0 14 0.00047 35.0 9.2 73 299-374 107-189 (414)
175 3eie_A Vacuolar protein sortin 72.9 4.9 0.00017 37.1 5.8 51 111-167 13-68 (322)
176 4ag6_A VIRB4 ATPase, type IV s 72.8 3.2 0.00011 39.6 4.6 42 149-198 34-75 (392)
177 1jbk_A CLPB protein; beta barr 72.8 2.8 9.5E-05 34.7 3.7 18 150-167 43-60 (195)
178 1bg2_A Kinesin; motor protein, 72.0 2.2 7.5E-05 39.6 3.1 24 144-167 70-95 (325)
179 1q0u_A Bstdead; DEAD protein, 71.8 4 0.00014 35.1 4.6 71 300-374 72-156 (219)
180 3dc4_A Kinesin-like protein NO 71.7 2 6.8E-05 40.3 2.7 23 144-166 87-111 (344)
181 2pt7_A CAG-ALFA; ATPase, prote 71.7 1.6 5.6E-05 40.7 2.1 20 147-166 168-187 (330)
182 3b6u_A Kinesin-like protein KI 71.5 2.3 7.9E-05 40.2 3.1 23 144-166 94-118 (372)
183 2j9r_A Thymidine kinase; TK1, 71.0 3.9 0.00013 35.4 4.2 40 150-197 28-67 (214)
184 2nr8_A Kinesin-like protein KI 71.0 2.5 8.5E-05 39.8 3.2 24 143-166 95-120 (358)
185 1t5c_A CENP-E protein, centrom 70.9 2.5 8.6E-05 39.7 3.2 24 144-167 70-95 (349)
186 4b4t_J 26S protease regulatory 70.7 2 6.8E-05 41.1 2.5 54 111-167 143-199 (405)
187 3gbj_A KIF13B protein; kinesin 70.7 2.5 8.7E-05 39.7 3.2 25 143-167 84-110 (354)
188 2vvg_A Kinesin-2; motor protei 70.5 2.4 8.3E-05 39.8 3.0 22 145-166 83-106 (350)
189 1x88_A Kinesin-like protein KI 70.3 2.4 8.3E-05 40.0 3.0 23 144-166 81-105 (359)
190 4a14_A Kinesin, kinesin-like p 70.3 2.4 8.2E-05 39.7 2.9 24 144-167 76-101 (344)
191 2zfi_A Kinesin-like protein KI 70.2 2.5 8.6E-05 40.0 3.1 23 144-166 82-106 (366)
192 2y65_A Kinesin, kinesin heavy 70.2 2.5 8.4E-05 40.0 3.0 22 145-166 78-101 (365)
193 2h58_A Kinesin-like protein KI 70.2 2.5 8.6E-05 39.4 3.0 26 142-167 71-98 (330)
194 2w0m_A SSO2452; RECA, SSPF, un 70.1 3.2 0.00011 35.8 3.7 20 149-168 22-41 (235)
195 2r44_A Uncharacterized protein 69.9 1.7 5.8E-05 40.4 1.8 23 145-167 41-63 (331)
196 1goj_A Kinesin, kinesin heavy 69.9 2.5 8.4E-05 39.8 2.9 22 145-166 74-97 (355)
197 1lvg_A Guanylate kinase, GMP k 69.8 2.1 7.1E-05 36.5 2.2 19 149-167 3-21 (198)
198 3lre_A Kinesin-like protein KI 69.7 2.5 8.6E-05 39.8 2.9 23 144-166 98-122 (355)
199 3bos_A Putative DNA replicatio 69.7 2 6.8E-05 37.4 2.2 19 149-167 51-69 (242)
200 1v8k_A Kinesin-like protein KI 69.6 2.6 8.8E-05 40.5 3.0 22 145-166 148-171 (410)
201 3t0q_A AGR253WP; kinesin, alph 69.3 2.4 8.1E-05 39.9 2.7 25 143-167 77-103 (349)
202 4b4t_H 26S protease regulatory 69.2 1.6 5.6E-05 42.5 1.6 55 110-167 203-260 (467)
203 2qmh_A HPR kinase/phosphorylas 69.2 2 6.7E-05 36.8 1.9 19 149-167 33-51 (205)
204 1f9v_A Kinesin-like protein KA 69.2 2.6 8.9E-05 39.6 2.9 25 143-167 76-102 (347)
205 2wbe_C Bipolar kinesin KRP-130 69.1 2.5 8.7E-05 40.0 2.8 22 145-166 94-117 (373)
206 1ojl_A Transcriptional regulat 69.0 2.6 8.7E-05 38.8 2.8 19 149-167 24-42 (304)
207 3a8t_A Adenylate isopentenyltr 68.8 2 6.7E-05 40.1 2.0 17 151-167 41-57 (339)
208 3syl_A Protein CBBX; photosynt 68.6 2.2 7.5E-05 39.0 2.3 18 150-167 67-84 (309)
209 3bh0_A DNAB-like replicative h 68.5 4.8 0.00017 37.1 4.6 53 148-209 66-118 (315)
210 3tau_A Guanylate kinase, GMP k 68.4 2.3 7.8E-05 36.5 2.2 19 149-167 7-25 (208)
211 2heh_A KIF2C protein; kinesin, 68.3 2.6 8.9E-05 40.1 2.7 23 145-167 128-152 (387)
212 3gk5_A Uncharacterized rhodane 68.3 5.8 0.0002 29.9 4.3 37 299-335 54-90 (108)
213 3vaa_A Shikimate kinase, SK; s 68.1 2.4 8.1E-05 36.1 2.2 20 149-168 24-43 (199)
214 1xwi_A SKD1 protein; VPS4B, AA 68.0 7.6 0.00026 35.8 5.9 51 111-167 7-62 (322)
215 4etp_A Kinesin-like protein KA 67.8 3 0.0001 40.1 3.1 25 143-167 132-158 (403)
216 4b4t_L 26S protease subunit RP 67.7 1.7 5.8E-05 42.2 1.3 54 111-167 176-232 (437)
217 3cob_A Kinesin heavy chain-lik 67.4 2.7 9.4E-05 39.7 2.7 25 143-167 71-97 (369)
218 4akg_A Glutathione S-transfera 67.3 4.8 0.00016 48.1 5.2 49 120-169 890-942 (2695)
219 2owm_A Nckin3-434, related to 67.0 3.1 0.00011 40.4 3.0 24 144-167 129-154 (443)
220 2px0_A Flagellar biosynthesis 67.0 4.8 0.00016 36.8 4.2 20 150-169 105-124 (296)
221 1um8_A ATP-dependent CLP prote 66.9 8.3 0.00028 36.4 6.1 18 150-167 72-89 (376)
222 3foz_A TRNA delta(2)-isopenten 66.9 2.3 7.9E-05 39.1 2.0 16 152-167 12-27 (316)
223 3exa_A TRNA delta(2)-isopenten 66.9 2.3 7.9E-05 39.2 2.0 16 152-167 5-20 (322)
224 2rep_A Kinesin-like protein KI 66.8 3.2 0.00011 39.4 3.0 24 143-166 107-132 (376)
225 3bfn_A Kinesin-like protein KI 66.6 2.6 8.8E-05 40.1 2.3 22 146-167 93-116 (388)
226 3u06_A Protein claret segregat 66.6 3.1 0.00011 40.0 2.9 26 142-167 129-156 (412)
227 3ney_A 55 kDa erythrocyte memb 66.1 2.6 9.1E-05 36.0 2.1 18 149-166 18-35 (197)
228 3iij_A Coilin-interacting nucl 65.6 2.4 8.3E-05 35.2 1.8 21 148-168 9-29 (180)
229 1a5t_A Delta prime, HOLB; zinc 65.5 3.7 0.00013 38.2 3.2 34 136-169 3-43 (334)
230 1ixz_A ATP-dependent metallopr 65.2 2 6.9E-05 38.1 1.2 54 111-167 11-66 (254)
231 3te6_A Regulatory protein SIR3 64.9 2 7E-05 39.7 1.2 20 149-168 44-63 (318)
232 4a2w_A RIG-I, retinoic acid in 64.8 7.8 0.00027 41.7 6.0 71 300-374 296-377 (936)
233 2jtq_A Phage shock protein E; 64.8 10 0.00034 26.9 4.8 44 290-334 31-75 (85)
234 1z6g_A Guanylate kinase; struc 64.8 3.2 0.00011 35.9 2.5 20 147-166 20-39 (218)
235 4b4t_K 26S protease regulatory 64.7 2.2 7.4E-05 41.4 1.4 54 111-167 167-223 (428)
236 1ex7_A Guanylate kinase; subst 64.6 2.5 8.7E-05 35.7 1.7 16 151-166 2-17 (186)
237 2ze6_A Isopentenyl transferase 64.6 2.7 9.3E-05 37.4 2.0 15 153-167 4-18 (253)
238 3trf_A Shikimate kinase, SK; a 64.5 3 0.0001 34.8 2.2 19 150-168 5-23 (185)
239 3d8b_A Fidgetin-like protein 1 64.5 8.2 0.00028 36.2 5.5 19 149-167 116-134 (357)
240 3uk6_A RUVB-like 2; hexameric 64.5 2.9 9.9E-05 39.3 2.3 18 150-167 70-87 (368)
241 2ewv_A Twitching motility prot 64.4 2.3 7.7E-05 40.5 1.5 20 148-167 134-153 (372)
242 1d2n_A N-ethylmaleimide-sensit 64.4 2.6 8.9E-05 37.8 1.9 17 151-167 65-81 (272)
243 1zp6_A Hypothetical protein AT 64.4 2.3 8E-05 35.6 1.4 19 148-166 7-25 (191)
244 2qz4_A Paraplegin; AAA+, SPG7, 64.3 2.9 9.9E-05 37.1 2.1 18 150-167 39-56 (262)
245 3b9p_A CG5977-PA, isoform A; A 64.1 2.8 9.7E-05 38.1 2.1 19 149-167 53-71 (297)
246 1cr0_A DNA primase/helicase; R 64.0 9.3 0.00032 34.6 5.6 21 148-168 33-53 (296)
247 2j41_A Guanylate kinase; GMP, 64.0 3 0.0001 35.4 2.1 20 148-167 4-23 (207)
248 1c4o_A DNA nucleotide excision 63.8 47 0.0016 34.0 11.4 85 276-364 33-144 (664)
249 3eme_A Rhodanese-like domain p 63.8 4.9 0.00017 29.9 3.1 36 299-334 55-90 (103)
250 3foj_A Uncharacterized protein 63.8 5.5 0.00019 29.4 3.3 37 299-335 55-91 (100)
251 3tr0_A Guanylate kinase, GMP k 63.6 3.2 0.00011 35.2 2.2 19 149-167 6-24 (205)
252 2chg_A Replication factor C sm 63.4 5.8 0.0002 33.6 3.9 17 151-167 39-55 (226)
253 3a00_A Guanylate kinase, GMP k 63.4 3.4 0.00012 34.6 2.3 16 151-166 2-17 (186)
254 2z43_A DNA repair and recombin 63.2 5.2 0.00018 37.1 3.7 59 149-209 106-165 (324)
255 2x8a_A Nuclear valosin-contain 63.0 1.3 4.4E-05 40.2 -0.5 54 111-167 5-61 (274)
256 2ehv_A Hypothetical protein PH 62.9 5.4 0.00019 34.9 3.7 23 147-169 27-49 (251)
257 2z0m_A 337AA long hypothetical 62.8 13 0.00043 34.0 6.4 70 300-374 56-135 (337)
258 1tf5_A Preprotein translocase 62.7 22 0.00075 37.4 8.5 69 300-374 124-209 (844)
259 1znw_A Guanylate kinase, GMP k 62.6 3.4 0.00012 35.3 2.2 22 146-167 16-37 (207)
260 1lv7_A FTSH; alpha/beta domain 62.6 3.1 0.00011 36.9 2.0 18 150-167 45-62 (257)
261 2qor_A Guanylate kinase; phosp 62.3 3.3 0.00011 35.3 2.1 21 147-167 9-29 (204)
262 1iy2_A ATP-dependent metallopr 62.2 2.4 8E-05 38.3 1.1 54 111-167 35-90 (278)
263 4b4t_I 26S protease regulatory 62.1 2.3 7.7E-05 41.1 1.0 18 150-167 216-233 (437)
264 3lw7_A Adenylate kinase relate 61.9 2.8 9.5E-05 34.3 1.4 16 152-167 3-18 (179)
265 4gp7_A Metallophosphoesterase; 61.6 2.5 8.6E-05 35.0 1.1 20 149-168 8-27 (171)
266 3iwh_A Rhodanese-like domain p 61.6 5.8 0.0002 29.7 3.1 36 299-334 55-90 (103)
267 3vkg_A Dynein heavy chain, cyt 61.5 6.6 0.00023 47.6 4.9 49 120-169 873-925 (3245)
268 1ry6_A Internal kinesin; kines 61.4 4.2 0.00014 38.3 2.7 18 149-166 82-101 (360)
269 2fsf_A Preprotein translocase 61.2 14 0.00047 38.8 6.7 39 131-172 71-109 (853)
270 1nlf_A Regulatory protein REPA 61.1 9.3 0.00032 34.3 5.0 24 147-170 27-50 (279)
271 3crm_A TRNA delta(2)-isopenten 61.1 3.4 0.00012 38.3 2.0 16 152-167 7-22 (323)
272 1l8q_A Chromosomal replication 60.8 3.9 0.00013 37.7 2.4 18 150-167 37-54 (324)
273 1kag_A SKI, shikimate kinase I 60.8 4.2 0.00014 33.3 2.4 18 150-167 4-21 (173)
274 1njg_A DNA polymerase III subu 60.5 6.2 0.00021 33.9 3.6 16 152-167 47-62 (250)
275 1qhx_A CPT, protein (chloramph 60.5 3.2 0.00011 34.3 1.6 18 150-167 3-20 (178)
276 3t15_A Ribulose bisphosphate c 60.4 3.7 0.00013 37.4 2.1 17 151-167 37-53 (293)
277 3g5j_A Putative ATP/GTP bindin 60.4 9.4 0.00032 29.6 4.3 37 301-337 90-127 (134)
278 2l82_A Designed protein OR32; 60.3 50 0.0017 24.5 7.9 51 303-353 5-55 (162)
279 2ykg_A Probable ATP-dependent 60.2 11 0.00039 38.7 6.1 70 301-374 62-142 (696)
280 1w4r_A Thymidine kinase; type 60.0 7.6 0.00026 33.0 3.8 38 150-195 20-57 (195)
281 2fz4_A DNA repair protein RAD2 59.8 17 0.00059 31.6 6.4 46 300-358 133-179 (237)
282 2qp9_X Vacuolar protein sortin 59.7 4.2 0.00014 38.3 2.4 18 150-167 84-101 (355)
283 1nkt_A Preprotein translocase 59.7 27 0.00091 37.0 8.5 69 300-374 152-237 (922)
284 2ius_A DNA translocase FTSK; n 59.6 10 0.00035 37.5 5.2 20 150-169 167-186 (512)
285 1w36_B RECB, exodeoxyribonucle 59.5 14 0.00047 40.9 6.8 58 152-209 18-79 (1180)
286 1s96_A Guanylate kinase, GMP k 59.5 4.2 0.00015 35.3 2.2 20 147-166 13-32 (219)
287 1wv9_A Rhodanese homolog TT165 59.4 7.5 0.00026 28.2 3.3 35 301-335 54-88 (94)
288 3e4c_A Caspase-1; zymogen, inf 59.3 16 0.00054 33.4 6.1 47 301-348 61-118 (302)
289 4fcw_A Chaperone protein CLPB; 58.4 4.8 0.00017 36.7 2.6 18 151-168 48-65 (311)
290 2oca_A DAR protein, ATP-depend 58.3 12 0.00042 36.8 5.7 69 299-374 156-231 (510)
291 1hqc_A RUVB; extended AAA-ATPa 58.0 4.4 0.00015 37.2 2.2 18 150-167 38-55 (324)
292 3lnc_A Guanylate kinase, GMP k 57.9 4.5 0.00015 35.2 2.1 20 148-167 25-44 (231)
293 2zr9_A Protein RECA, recombina 57.7 7.5 0.00026 36.4 3.8 39 149-195 60-98 (349)
294 3pfi_A Holliday junction ATP-d 57.6 4.5 0.00015 37.5 2.2 17 151-167 56-72 (338)
295 3i5x_A ATP-dependent RNA helic 57.5 22 0.00077 35.4 7.6 71 301-374 147-232 (563)
296 2c9o_A RUVB-like 1; hexameric 57.3 4.3 0.00015 39.6 2.1 19 150-168 63-81 (456)
297 3d3q_A TRNA delta(2)-isopenten 57.3 4.3 0.00015 37.9 2.0 16 152-167 9-24 (340)
298 1g5t_A COB(I)alamin adenosyltr 57.3 9.7 0.00033 32.4 4.0 36 150-193 28-63 (196)
299 4eun_A Thermoresistant glucoki 57.1 4.9 0.00017 34.0 2.2 19 149-167 28-46 (200)
300 3eph_A TRNA isopentenyltransfe 56.8 4.6 0.00016 38.6 2.1 16 152-167 4-19 (409)
301 2cvh_A DNA repair and recombin 56.6 4.2 0.00014 34.8 1.7 20 149-168 19-38 (220)
302 1y63_A LMAJ004144AAA protein; 56.4 5.1 0.00017 33.4 2.2 19 149-167 9-27 (184)
303 2iut_A DNA translocase FTSK; n 56.4 11 0.00039 37.7 5.0 23 151-173 215-237 (574)
304 2i1q_A DNA repair and recombin 56.3 9.2 0.00031 35.2 4.1 60 150-209 98-166 (322)
305 1u94_A RECA protein, recombina 56.3 7.9 0.00027 36.4 3.7 39 149-195 62-100 (356)
306 1kht_A Adenylate kinase; phosp 56.2 4.2 0.00014 33.9 1.6 18 150-167 3-20 (192)
307 1ly1_A Polynucleotide kinase; 56.1 4 0.00014 33.6 1.4 16 152-167 4-19 (181)
308 3sqw_A ATP-dependent RNA helic 55.8 25 0.00085 35.3 7.6 71 301-374 96-181 (579)
309 3b6e_A Interferon-induced heli 55.8 7.6 0.00026 32.9 3.3 55 300-358 82-140 (216)
310 1sxj_D Activator 1 41 kDa subu 55.5 7.2 0.00025 36.2 3.3 17 151-167 59-75 (353)
311 3nwj_A ATSK2; P loop, shikimat 55.5 6.1 0.00021 35.1 2.6 20 149-168 47-66 (250)
312 3kta_A Chromosome segregation 55.4 6 0.00021 32.7 2.5 16 152-167 28-43 (182)
313 4a74_A DNA repair and recombin 55.2 3.9 0.00013 35.3 1.3 19 149-167 24-42 (231)
314 3dm5_A SRP54, signal recogniti 55.2 14 0.00049 35.7 5.4 17 152-168 102-118 (443)
315 3u4q_B ATP-dependent helicase/ 55.0 8.5 0.00029 42.6 4.2 49 154-208 5-53 (1166)
316 1g8p_A Magnesium-chelatase 38 55.0 3.6 0.00012 38.3 1.1 19 149-167 44-62 (350)
317 3vfd_A Spastin; ATPase, microt 54.9 5 0.00017 38.2 2.1 18 150-167 148-165 (389)
318 2r8r_A Sensor protein; KDPD, P 54.9 9.3 0.00032 33.3 3.6 20 152-171 8-27 (228)
319 2fwr_A DNA repair protein RAD2 54.5 16 0.00054 35.5 5.7 46 300-358 133-179 (472)
320 3kb2_A SPBC2 prophage-derived 54.4 5.4 0.00018 32.5 2.0 16 152-167 3-18 (173)
321 3hr8_A Protein RECA; alpha and 54.4 9 0.00031 36.0 3.7 42 149-198 60-101 (356)
322 2orv_A Thymidine kinase; TP4A 54.3 9.7 0.00033 33.3 3.6 40 150-197 19-58 (234)
323 1in4_A RUVB, holliday junction 54.2 5.5 0.00019 37.0 2.2 18 151-168 52-69 (334)
324 2qby_A CDC6 homolog 1, cell di 54.0 9.1 0.00031 35.8 3.8 18 150-167 45-62 (386)
325 2r62_A Cell division protease 54.0 2.8 9.7E-05 37.4 0.2 18 150-167 44-61 (268)
326 3flh_A Uncharacterized protein 54.0 11 0.00038 29.0 3.7 37 299-335 70-108 (124)
327 2v1u_A Cell division control p 53.8 5.1 0.00017 37.6 2.0 19 149-167 43-61 (387)
328 1knq_A Gluconate kinase; ALFA/ 53.7 5 0.00017 33.0 1.7 18 150-167 8-25 (175)
329 1n0w_A DNA repair protein RAD5 53.6 4.8 0.00017 35.0 1.6 21 149-169 23-43 (243)
330 2q6t_A DNAB replication FORK h 53.6 9.3 0.00032 37.1 3.8 50 149-206 199-248 (444)
331 3uie_A Adenylyl-sulfate kinase 52.9 5.3 0.00018 33.9 1.7 32 135-167 11-42 (200)
332 1m7g_A Adenylylsulfate kinase; 52.8 7.3 0.00025 33.3 2.6 31 136-167 12-42 (211)
333 1gmx_A GLPE protein; transfera 52.7 16 0.00054 27.2 4.3 38 299-336 57-95 (108)
334 3k1j_A LON protease, ATP-depen 52.6 8.8 0.0003 39.0 3.6 22 146-167 56-77 (604)
335 2r2a_A Uncharacterized protein 52.6 6.8 0.00023 33.4 2.3 17 153-169 8-24 (199)
336 2v9p_A Replication protein E1; 52.5 5.6 0.00019 36.5 1.9 18 149-166 125-142 (305)
337 2ipc_A Preprotein translocase 52.5 31 0.0011 36.6 7.5 53 300-358 120-176 (997)
338 3qf7_A RAD50; ABC-ATPase, ATPa 52.5 6.3 0.00022 37.2 2.3 18 152-169 25-42 (365)
339 1f2t_A RAD50 ABC-ATPase; DNA d 52.5 6.6 0.00023 31.6 2.2 16 152-167 25-40 (149)
340 3cmu_A Protein RECA, recombina 52.5 18 0.00062 42.0 6.3 25 150-174 1427-1451(2050)
341 3tif_A Uncharacterized ABC tra 52.4 4.5 0.00015 35.6 1.2 18 149-166 30-47 (235)
342 3e2i_A Thymidine kinase; Zn-bi 52.4 11 0.00037 32.6 3.6 40 150-197 28-67 (219)
343 3zyw_A Glutaredoxin-3; metal b 52.3 68 0.0023 24.0 7.9 45 300-344 15-65 (111)
344 3ipz_A Monothiol glutaredoxin- 52.3 69 0.0024 23.7 8.1 46 300-345 17-68 (109)
345 3kl4_A SRP54, signal recogniti 52.3 17 0.00059 35.0 5.4 17 152-168 99-115 (433)
346 3c8u_A Fructokinase; YP_612366 52.2 5.9 0.0002 33.8 1.9 19 149-167 21-39 (208)
347 3pvs_A Replication-associated 52.1 5.7 0.0002 38.7 2.0 18 151-168 51-68 (447)
348 2r6a_A DNAB helicase, replicat 52.1 9.3 0.00032 37.2 3.5 49 149-205 202-250 (454)
349 3bgw_A DNAB-like replicative h 52.0 9.4 0.00032 37.1 3.5 50 149-207 196-245 (444)
350 1ye8_A Protein THEP1, hypothet 51.8 6.3 0.00022 32.9 2.0 15 152-166 2-16 (178)
351 1xjc_A MOBB protein homolog; s 51.7 13 0.00044 30.7 3.8 15 152-166 6-20 (169)
352 1xp8_A RECA protein, recombina 51.7 11 0.00037 35.6 3.8 40 149-196 73-112 (366)
353 2bdt_A BH3686; alpha-beta prot 51.6 6.3 0.00022 32.9 2.0 16 152-167 4-19 (189)
354 4gl2_A Interferon-induced heli 51.5 3.5 0.00012 42.6 0.4 71 300-374 56-142 (699)
355 2i3b_A HCR-ntpase, human cance 51.4 7.3 0.00025 32.9 2.3 18 150-167 1-18 (189)
356 3f9v_A Minichromosome maintena 51.4 6.7 0.00023 39.8 2.5 15 152-166 329-343 (595)
357 3hix_A ALR3790 protein; rhodan 51.3 11 0.00036 28.2 3.0 37 299-335 51-88 (106)
358 1sxj_A Activator 1 95 kDa subu 51.2 10 0.00034 37.7 3.7 18 151-168 78-95 (516)
359 3l9o_A ATP-dependent RNA helic 51.1 11 0.00038 41.3 4.2 64 299-373 226-295 (1108)
360 3pxg_A Negative regulator of g 51.0 9.3 0.00032 37.4 3.4 20 149-168 200-219 (468)
361 2zan_A Vacuolar protein sortin 50.9 6 0.00021 38.5 2.0 53 111-167 129-184 (444)
362 3io5_A Recombination and repai 50.7 12 0.00041 34.6 3.8 50 152-210 30-79 (333)
363 3hjh_A Transcription-repair-co 50.7 99 0.0034 30.2 10.6 111 274-388 17-145 (483)
364 3cm0_A Adenylate kinase; ATP-b 50.5 5.1 0.00017 33.3 1.2 18 150-167 4-21 (186)
365 2z4s_A Chromosomal replication 50.4 15 0.0005 35.7 4.6 19 150-168 130-148 (440)
366 1rj9_A FTSY, signal recognitio 50.3 13 0.00043 34.1 3.9 18 150-167 102-119 (304)
367 4h1g_A Maltose binding protein 50.2 8.2 0.00028 40.1 2.9 24 143-166 454-479 (715)
368 1gvn_B Zeta; postsegregational 49.9 6 0.00021 35.9 1.7 17 151-167 34-50 (287)
369 1v5w_A DMC1, meiotic recombina 49.9 15 0.0005 34.3 4.4 58 150-209 122-180 (343)
370 3t61_A Gluconokinase; PSI-biol 49.9 6.9 0.00024 33.1 2.0 17 151-167 19-35 (202)
371 4a1f_A DNAB helicase, replicat 49.6 11 0.00037 35.2 3.4 49 149-206 45-93 (338)
372 4anj_A Unconventional myosin-V 49.5 13 0.00043 40.3 4.3 67 103-169 88-163 (1052)
373 1fnn_A CDC6P, cell division co 49.4 9.1 0.00031 35.9 3.0 16 152-167 46-61 (389)
374 2fsx_A RV0390, COG0607: rhodan 49.2 16 0.00055 29.1 4.0 37 299-335 79-116 (148)
375 1via_A Shikimate kinase; struc 48.8 8.2 0.00028 31.7 2.2 17 152-168 6-22 (175)
376 3hu3_A Transitional endoplasmi 48.6 5.8 0.0002 39.1 1.5 18 150-167 238-255 (489)
377 1zuh_A Shikimate kinase; alpha 48.6 7.6 0.00026 31.6 2.0 18 151-168 8-25 (168)
378 2h54_A Caspase-1; allosteric s 48.6 47 0.0016 27.5 6.9 48 300-348 43-101 (178)
379 2cbz_A Multidrug resistance-as 48.6 5.6 0.00019 35.0 1.2 57 315-375 137-201 (237)
380 2rhm_A Putative kinase; P-loop 48.6 6.5 0.00022 32.8 1.6 18 150-167 5-22 (193)
381 3nhv_A BH2092 protein; alpha-b 48.5 12 0.00041 29.9 3.1 37 299-335 71-109 (144)
382 3d1p_A Putative thiosulfate su 48.3 14 0.00047 29.1 3.4 37 299-335 90-127 (139)
383 2k0z_A Uncharacterized protein 48.1 25 0.00086 26.2 4.8 37 299-335 55-91 (110)
384 1pyo_A Caspase-2; apoptosis, c 48.1 46 0.0016 27.3 6.7 83 300-388 33-134 (167)
385 2qby_B CDC6 homolog 3, cell di 48.1 11 0.00038 35.4 3.3 18 150-167 45-62 (384)
386 1nij_A Hypothetical protein YJ 48.0 15 0.00053 33.7 4.2 14 153-166 7-20 (318)
387 3sir_A Caspase; hydrolase; 2.6 48.0 40 0.0014 29.9 6.7 39 310-349 43-81 (259)
388 1sgw_A Putative ABC transporte 48.0 6.2 0.00021 34.1 1.4 18 149-166 34-51 (214)
389 2bwj_A Adenylate kinase 5; pho 47.9 9.9 0.00034 31.8 2.7 19 149-167 11-29 (199)
390 1sxj_C Activator 1 40 kDa subu 47.9 12 0.00043 34.5 3.6 16 153-168 49-64 (340)
391 2c95_A Adenylate kinase 1; tra 47.8 9.3 0.00032 31.9 2.5 19 149-167 8-26 (196)
392 2qt1_A Nicotinamide riboside k 47.8 5.2 0.00018 34.0 0.9 20 148-167 19-38 (207)
393 1iqp_A RFCS; clamp loader, ext 47.7 11 0.00037 34.4 3.1 16 152-167 48-63 (327)
394 3h11_B Caspase-8; cell death, 47.6 42 0.0014 30.0 6.8 39 309-348 47-85 (271)
395 1tq1_A AT5G66040, senescence-a 47.6 13 0.00045 28.8 3.2 37 299-335 81-118 (129)
396 2fp3_A Caspase NC; apoptosis, 47.6 39 0.0013 31.0 6.8 49 299-348 60-120 (316)
397 1t5i_A C_terminal domain of A 47.3 1.1E+02 0.0038 24.6 15.4 35 186-224 31-65 (172)
398 3asz_A Uridine kinase; cytidin 47.2 7.6 0.00026 33.0 1.8 18 150-167 6-23 (211)
399 1vma_A Cell division protein F 47.2 14 0.00048 33.8 3.7 18 151-168 105-122 (306)
400 2d7d_A Uvrabc system protein B 47.1 76 0.0026 32.4 9.6 108 276-387 37-175 (661)
401 1rif_A DAR protein, DNA helica 46.9 17 0.0006 32.4 4.3 53 299-358 156-212 (282)
402 2f1r_A Molybdopterin-guanine d 46.6 4.9 0.00017 33.4 0.5 16 152-167 4-19 (171)
403 4fn4_A Short chain dehydrogena 46.6 65 0.0022 28.4 7.9 60 299-358 30-92 (254)
404 2pcj_A ABC transporter, lipopr 46.4 6.5 0.00022 34.2 1.3 18 149-166 29-46 (224)
405 1qxn_A SUD, sulfide dehydrogen 46.2 14 0.00047 29.2 3.1 37 299-335 81-118 (137)
406 3gfo_A Cobalt import ATP-bindi 46.0 6.2 0.00021 35.6 1.1 18 149-166 33-50 (275)
407 2pze_A Cystic fibrosis transme 45.9 6.4 0.00022 34.4 1.1 18 149-166 33-50 (229)
408 1tev_A UMP-CMP kinase; ploop, 45.9 8.7 0.0003 31.9 2.0 17 151-167 4-20 (196)
409 1cke_A CK, MSSA, protein (cyti 45.8 8.6 0.0003 33.0 2.0 17 151-167 6-22 (227)
410 3auy_A DNA double-strand break 45.7 11 0.00036 35.6 2.8 17 152-168 27-43 (371)
411 1g41_A Heat shock protein HSLU 45.7 9 0.00031 37.2 2.2 18 150-167 50-67 (444)
412 1vee_A Proline-rich protein fa 45.5 21 0.00071 27.9 4.1 37 299-335 73-110 (134)
413 1ak2_A Adenylate kinase isoenz 45.3 9.2 0.00032 33.2 2.1 18 150-167 16-33 (233)
414 1nks_A Adenylate kinase; therm 45.2 9.6 0.00033 31.6 2.1 16 152-167 3-18 (194)
415 2ce7_A Cell division protein F 45.0 7.1 0.00024 38.3 1.4 17 151-167 50-66 (476)
416 1qf9_A UMP/CMP kinase, protein 44.9 9.7 0.00033 31.6 2.1 16 152-167 8-23 (194)
417 1zd8_A GTP:AMP phosphotransfer 44.8 9.6 0.00033 32.9 2.1 18 150-167 7-24 (227)
418 1lkx_A Myosin IE heavy chain; 44.8 18 0.00061 37.3 4.4 67 103-169 39-113 (697)
419 3fb4_A Adenylate kinase; psych 44.6 9.3 0.00032 32.6 2.0 16 153-168 3-18 (216)
420 3m6a_A ATP-dependent protease 44.4 9.1 0.00031 38.3 2.1 19 149-167 107-125 (543)
421 4g1u_C Hemin import ATP-bindin 44.2 7 0.00024 35.0 1.1 18 149-166 36-53 (266)
422 2hhg_A Hypothetical protein RP 44.2 14 0.00049 28.9 2.9 37 299-335 85-122 (139)
423 3cf2_A TER ATPase, transitiona 44.1 8.9 0.0003 40.3 2.0 56 111-167 472-528 (806)
424 2ghi_A Transport protein; mult 43.9 7.8 0.00027 34.6 1.4 58 314-375 164-226 (260)
425 2ff7_A Alpha-hemolysin translo 43.8 7.7 0.00026 34.3 1.3 18 149-166 34-51 (247)
426 1ji0_A ABC transporter; ATP bi 43.8 7.2 0.00025 34.3 1.1 18 149-166 31-48 (240)
427 1g6h_A High-affinity branched- 43.8 7.2 0.00025 34.7 1.1 46 315-361 163-214 (257)
428 2zu0_C Probable ATP-dependent 43.7 8.9 0.0003 34.3 1.8 48 313-361 172-225 (267)
429 3dl0_A Adenylate kinase; phosp 43.5 9.9 0.00034 32.4 2.0 16 152-167 2-17 (216)
430 1b0u_A Histidine permease; ABC 43.5 7.5 0.00026 34.7 1.2 18 149-166 31-48 (262)
431 1zu4_A FTSY; GTPase, signal re 43.4 17 0.00058 33.5 3.7 19 150-168 105-123 (320)
432 1e6c_A Shikimate kinase; phosp 43.4 11 0.00038 30.6 2.2 17 151-167 3-19 (173)
433 2pez_A Bifunctional 3'-phospho 43.2 9.4 0.00032 31.5 1.7 19 149-167 4-22 (179)
434 2d2e_A SUFC protein; ABC-ATPas 43.1 9 0.00031 33.9 1.7 49 312-361 150-204 (250)
435 2v54_A DTMP kinase, thymidylat 43.0 9.7 0.00033 32.0 1.8 19 149-167 3-21 (204)
436 1htw_A HI0065; nucleotide-bind 43.0 8.4 0.00029 31.4 1.4 19 148-166 31-49 (158)
437 2iyv_A Shikimate kinase, SK; t 42.9 12 0.00041 30.9 2.4 17 151-167 3-19 (184)
438 3b9q_A Chloroplast SRP recepto 42.8 9.2 0.00031 35.0 1.7 19 149-167 99-117 (302)
439 4akg_A Glutathione S-transfera 42.8 8.5 0.00029 46.1 1.8 20 148-167 1265-1284(2695)
440 2chq_A Replication factor C sm 42.7 15 0.0005 33.3 3.2 16 152-167 40-55 (319)
441 3qks_A DNA double-strand break 42.7 12 0.00041 31.9 2.3 16 152-167 25-40 (203)
442 3ice_A Transcription terminati 42.6 45 0.0015 31.7 6.4 29 139-167 160-191 (422)
443 2if2_A Dephospho-COA kinase; a 42.4 11 0.00038 31.7 2.1 16 152-167 3-18 (204)
444 1vpl_A ABC transporter, ATP-bi 42.4 8 0.00027 34.4 1.2 18 149-166 40-57 (256)
445 2ixe_A Antigen peptide transpo 42.1 8 0.00028 34.7 1.2 48 325-375 175-229 (271)
446 1wik_A Thioredoxin-like protei 42.1 1E+02 0.0034 22.7 7.7 47 300-346 14-66 (109)
447 3pxi_A Negative regulator of g 42.0 15 0.0005 38.5 3.4 19 150-168 201-219 (758)
448 1qtn_A Caspase-8; apoptosis, d 42.0 68 0.0023 26.1 6.7 73 310-388 54-130 (164)
449 2p6n_A ATP-dependent RNA helic 41.9 1.5E+02 0.005 24.5 12.2 35 186-224 54-88 (191)
450 3h11_A CAsp8 and FADD-like apo 41.9 20 0.00068 32.2 3.7 50 299-349 42-91 (272)
451 1ukz_A Uridylate kinase; trans 41.8 9 0.00031 32.3 1.4 16 152-167 17-32 (203)
452 1g8x_A Myosin II heavy chain f 41.8 23 0.00079 38.3 4.8 67 103-169 117-191 (1010)
453 2yan_A Glutaredoxin-3; oxidore 41.8 99 0.0034 22.5 7.9 55 300-354 16-76 (105)
454 2yz2_A Putative ABC transporte 41.7 8.2 0.00028 34.6 1.2 37 325-361 157-199 (266)
455 2olj_A Amino acid ABC transpor 41.7 8.3 0.00028 34.5 1.2 18 149-166 49-66 (263)
456 2qi9_C Vitamin B12 import ATP- 41.7 8.1 0.00028 34.2 1.1 18 149-166 25-42 (249)
457 2v3c_C SRP54, signal recogniti 41.6 22 0.00077 34.3 4.3 19 151-169 100-118 (432)
458 4e22_A Cytidylate kinase; P-lo 41.6 12 0.0004 33.1 2.2 19 149-167 26-44 (252)
459 3nh6_A ATP-binding cassette SU 41.6 6.4 0.00022 36.1 0.4 18 149-166 79-96 (306)
460 2cdn_A Adenylate kinase; phosp 41.6 11 0.00038 31.7 2.0 17 151-167 21-37 (201)
461 1mv5_A LMRA, multidrug resista 41.5 7.5 0.00026 34.2 0.9 18 149-166 27-44 (243)
462 4db1_A Myosin-7; S1DC, cardiac 41.5 17 0.00059 37.9 3.7 67 103-169 116-190 (783)
463 2bbw_A Adenylate kinase 4, AK4 41.2 11 0.00038 33.0 2.0 18 150-167 27-44 (246)
464 1zak_A Adenylate kinase; ATP:A 41.2 12 0.0004 32.1 2.1 18 151-168 6-23 (222)
465 2ihy_A ABC transporter, ATP-bi 41.1 8.4 0.00029 34.8 1.1 18 149-166 46-63 (279)
466 2vli_A Antibiotic resistance p 41.1 8.9 0.0003 31.6 1.3 18 150-167 5-22 (183)
467 2yvu_A Probable adenylyl-sulfa 41.1 11 0.00036 31.4 1.7 19 149-167 12-30 (186)
468 3p45_A Caspase-6; protease, hu 41.0 1.1E+02 0.0037 25.3 7.9 83 300-388 44-143 (179)
469 2nq2_C Hypothetical ABC transp 41.0 8.4 0.00029 34.2 1.1 18 149-166 30-47 (253)
470 2jaq_A Deoxyguanosine kinase; 40.8 12 0.0004 31.4 2.0 16 152-167 2-17 (205)
471 1q57_A DNA primase/helicase; d 40.7 14 0.00048 36.5 2.8 50 149-206 241-290 (503)
472 1uf9_A TT1252 protein; P-loop, 40.6 12 0.00042 31.2 2.1 16 152-167 10-25 (203)
473 2p6r_A Afuhel308 helicase; pro 40.6 25 0.00087 36.2 4.9 68 300-374 68-144 (702)
474 2dko_A Caspase-3; low barrier 40.4 58 0.002 26.0 5.9 74 309-388 39-115 (146)
475 1urh_A 3-mercaptopyruvate sulf 40.3 36 0.0012 30.4 5.3 39 299-337 229-268 (280)
476 2pt5_A Shikimate kinase, SK; a 40.2 12 0.00041 30.2 1.9 16 152-167 2-17 (168)
477 1w9i_A Myosin II heavy chain; 40.1 23 0.00077 37.0 4.3 67 103-169 117-191 (770)
478 3e70_C DPA, signal recognition 39.8 18 0.00062 33.4 3.3 18 150-167 129-146 (328)
479 2jgn_A DBX, DDX3, ATP-dependen 39.7 55 0.0019 27.0 6.1 37 186-226 46-82 (185)
480 3sr0_A Adenylate kinase; phosp 39.6 13 0.00043 31.9 2.0 16 153-168 3-18 (206)
481 1r6b_X CLPA protein; AAA+, N-t 39.6 11 0.00037 39.5 1.8 63 108-171 436-509 (758)
482 1jjv_A Dephospho-COA kinase; P 39.4 13 0.00043 31.5 2.0 15 153-167 5-19 (206)
483 1aky_A Adenylate kinase; ATP:A 39.4 14 0.00047 31.7 2.2 18 150-167 4-21 (220)
484 1rz3_A Hypothetical protein rb 39.4 13 0.00045 31.3 2.1 17 151-167 23-39 (201)
485 1c9k_A COBU, adenosylcobinamid 39.3 15 0.00051 30.7 2.3 14 153-166 2-15 (180)
486 1e4v_A Adenylate kinase; trans 39.1 13 0.00046 31.6 2.1 16 152-167 2-17 (214)
487 2vhj_A Ntpase P4, P4; non- hyd 38.8 10 0.00035 35.0 1.4 21 148-168 121-141 (331)
488 1m72_A Caspase-1; caspase, cys 38.7 62 0.0021 28.9 6.5 48 301-349 33-93 (272)
489 2bbs_A Cystic fibrosis transme 38.7 10 0.00035 34.5 1.3 18 149-166 63-80 (290)
490 3tqf_A HPR(Ser) kinase; transf 38.5 13 0.00044 31.0 1.8 19 149-167 15-33 (181)
491 2ycu_A Non muscle myosin 2C, a 38.5 24 0.00082 38.1 4.3 68 102-169 90-165 (995)
492 1kk8_A Myosin heavy chain, str 38.4 20 0.0007 37.7 3.7 67 103-169 114-188 (837)
493 2nn3_C Caspase-1; cysteine pro 38.3 70 0.0024 29.2 6.9 49 300-349 60-121 (310)
494 2wwf_A Thymidilate kinase, put 38.1 15 0.00052 31.0 2.3 19 149-167 9-27 (212)
495 3ilm_A ALR3790 protein; rhodan 38.1 21 0.00071 28.3 3.0 36 299-334 55-91 (141)
496 3fmp_B ATP-dependent RNA helic 38.0 31 0.0011 33.5 4.9 80 288-374 149-241 (479)
497 3a4m_A L-seryl-tRNA(SEC) kinas 38.0 11 0.00038 33.4 1.4 15 153-167 7-21 (260)
498 3umf_A Adenylate kinase; rossm 37.9 14 0.00048 31.9 2.0 19 153-171 32-50 (217)
499 2z0h_A DTMP kinase, thymidylat 37.9 11 0.00039 31.3 1.4 15 153-167 3-17 (197)
500 4ehd_A Caspase-3; caspase, apo 37.8 1E+02 0.0035 27.5 7.8 81 303-388 47-143 (277)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-59 Score=469.05 Aligned_cols=328 Identities=38% Similarity=0.678 Sum_probs=294.5
Q ss_pred CCeeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcC
Q psy9620 101 QMTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQS 179 (453)
Q Consensus 101 ~~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~ 179 (453)
.+.+.+. .|.|+.+|++++|++.++++++++||..|||+|+++||.+++++|++++||||||||++|++|++.++....
T Consensus 43 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 43 PVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp CEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred eeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 4556666 889999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------
Q psy9620 180 QLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------ 229 (453)
Q Consensus 180 ~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------ 229 (453)
......++++|||+||++||.|+++.+++++...++++.+++|+.....+
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccc
Confidence 43344678999999999999999999999998888999999988653211
Q ss_pred --------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEE
Q psy9620 230 --------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVE 277 (453)
Q Consensus 230 --------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 277 (453)
+.+|+++||||+|.++..++..++.++..+.+.... .....+.+.+.
T Consensus 203 ~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~ 281 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIY 281 (434)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEE
T ss_pred cCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEE
Confidence 468999999999999999999999999888776654 34466778888
Q ss_pred EccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe
Q psy9620 278 VCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVAT 357 (453)
Q Consensus 278 ~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT 357 (453)
.+....|...|.+++... ..++||||++++.|+.+++.|...++.+..+||++++.+|..++++|++|+.+|||||
T Consensus 282 ~~~~~~k~~~l~~~l~~~----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 357 (434)
T 2db3_A 282 EVNKYAKRSKLIEILSEQ----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT 357 (434)
T ss_dssp ECCGGGHHHHHHHHHHHC----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC
T ss_pred EeCcHHHHHHHHHHHHhC----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 888778888888777653 3459999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcC-CChHHHHHHHHHHHhcCCCCChHHHHH
Q psy9620 358 DVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ-QNSRQAKDLIDVLTESNHPVDPKLSAL 433 (453)
Q Consensus 358 ~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~v~~~l~~~ 433 (453)
+++++|||+|+|++||+||+|.+.++|+||+||+||.|+.|.|++|+++ ++...++++.++|++++++||++|.+|
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 9999999999999999999999999999999999999999999999994 578899999999999999999999764
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-53 Score=423.58 Aligned_cols=332 Identities=42% Similarity=0.694 Sum_probs=290.1
Q ss_pred eeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCC
Q psy9620 103 TLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQL 181 (453)
Q Consensus 103 ~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~ 181 (453)
...+. .|.|+.+|+++++++.+++++.++||..|+|+|.++|+.+++++|++++||||+|||++|++|++..+......
T Consensus 4 ~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~ 83 (417)
T 2i4i_A 4 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPG 83 (417)
T ss_dssp EEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCC
T ss_pred ccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcccc
Confidence 34455 88999999999999999999999999999999999999999999999999999999999999999887654321
Q ss_pred -------------CCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC---------C----------
Q psy9620 182 -------------KPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP---------Q---------- 229 (453)
Q Consensus 182 -------------~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---------~---------- 229 (453)
....++++|||+||++|+.|+++.+++++...++++..++|+..... .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~ 163 (417)
T 2i4i_A 84 EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV 163 (417)
T ss_dssp HHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHH
T ss_pred chhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHH
Confidence 12235789999999999999999999998888889888888764311 1
Q ss_pred ---------------------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccc
Q psy9620 230 ---------------------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL 264 (453)
Q Consensus 230 ---------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 264 (453)
...|++++|||++..+..++..++.++..+.+...
T Consensus 164 ~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 243 (417)
T 2i4i_A 164 DMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV 243 (417)
T ss_dssp HHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred HHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCC
Confidence 25789999999999999999999988877766554
Q ss_pred ccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHH
Q psy9620 265 TLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 344 (453)
Q Consensus 265 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 344 (453)
. .....+.+.+..+...++...+.+++... ....++||||++++.++.+++.|...++.+..+|+++++.+|..+++
T Consensus 244 ~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 320 (417)
T 2i4i_A 244 G-STSENITQKVVWVEESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 320 (417)
T ss_dssp ---CCSSEEEEEEECCGGGHHHHHHHHHHTC--CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred C-CCccCceEEEEEeccHhHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHH
Confidence 3 34456777777777777777777777654 24668999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCC
Q psy9620 345 EFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNH 424 (453)
Q Consensus 345 ~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (453)
.|++|+.+|||||+++++|||+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.+...++++++.++...+
T Consensus 321 ~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 321 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp HHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHhhc
Q psy9620 425 PVDPKLSALASRS 437 (453)
Q Consensus 425 ~v~~~l~~~~~~~ 437 (453)
++|++|.+++...
T Consensus 401 ~~~~~l~~~~~~~ 413 (417)
T 2i4i_A 401 EVPSWLENMAYEH 413 (417)
T ss_dssp CCCHHHHHHHTCS
T ss_pred cCCHHHHHHHHhh
Confidence 9999999998653
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=7.4e-50 Score=397.42 Aligned_cols=313 Identities=32% Similarity=0.541 Sum_probs=271.2
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
.+.+..+|++++|++.+++.++++||..|+|+|.++++.+++++|+++++|||+|||++|++|++..+... ..++
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~ 106 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRET 106 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSC
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCc
Confidence 34566789999999999999999999999999999999999999999999999999999999999876432 2466
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------- 229 (453)
++||++||++|+.|+.+.+.+++...++++..++|+.....+
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 899999999999999999999998888888888877542111
Q ss_pred ----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccc-hhh
Q psy9620 230 ----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHE-KEN 286 (453)
Q Consensus 230 ----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-k~~ 286 (453)
...|++++|||++.++.++...++.++..+.+..... ....+.+.+..+.... +..
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~ 265 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL-TLEGIKQFFVAVEREEWKFD 265 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGC-SCTTEEEEEEEESSTTHHHH
T ss_pred cHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccc-cCCCceEEEEEeCcHHhHHH
Confidence 4689999999999998888888888887776655442 3345566555554433 666
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
.+..++... ...++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+
T Consensus 266 ~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 342 (410)
T 2j0s_A 266 TLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 342 (410)
T ss_dssp HHHHHHHHH---TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCC
T ss_pred HHHHHHHhc---CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCc
Confidence 666666654 35699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChH
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPK 429 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~ 429 (453)
|++++||+||+|.+...|+||+||+||.|++|.|++|+++.+...++++.++++...+++|..
T Consensus 343 ~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 343 PQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp TTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred ccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 999999999999999999999999999999999999999999999999988888776666643
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.8e-49 Score=391.88 Aligned_cols=317 Identities=32% Similarity=0.533 Sum_probs=257.2
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
.+....+|+++++++.+++.+++.||..|+++|.++++.+++++|+++++|||+|||++|++|++..+.... .++
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-----~~~ 109 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL-----KAT 109 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS-----CSC
T ss_pred ccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC-----Cce
Confidence 456678899999999999999999999999999999999999999999999999999999999998875432 366
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC----------C----------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP----------Q---------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~----------~---------------------------- 229 (453)
++||++||++|+.|+.+.+++++...++.+..++++..... .
T Consensus 110 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 110 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred eEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 79999999999999999999998777788777777654211 1
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc-cchh
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKE 285 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~ 285 (453)
...|++++|||++.++..+...++.++..+.+...... ...+.+.+..... ..+.
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 268 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELT-LEGIRQFYINVEREEWKL 268 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCC-TTSCCEEEEECSSSTTHH
T ss_pred ECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccC-CCCceEEEEEeChHHhHH
Confidence 67899999999999999999999988887766554433 3344444444433 3355
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLD 365 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiD 365 (453)
..+..++.. ....++||||++++.++.+++.|...++.+..+|++|++.+|..+++.|++|+.+|||||+++++|||
T Consensus 269 ~~l~~~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 345 (414)
T 3eiq_A 269 DTLCDLYET---LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID 345 (414)
T ss_dssp HHHHHHHHS---SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CC
T ss_pred HHHHHHHHh---CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCC
Confidence 555555554 34569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHH
Q psy9620 366 VDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSAL 433 (453)
Q Consensus 366 ip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~ 433 (453)
+|++++||++|+|.+..+|+||+||+||.|++|.|++|+++.+...++.+.++++...+++|..+.++
T Consensus 346 ip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 346 VQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp GGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred ccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999888765
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6e-48 Score=382.33 Aligned_cols=312 Identities=29% Similarity=0.515 Sum_probs=269.9
Q ss_pred CccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEE
Q psy9620 110 NPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIV 189 (453)
Q Consensus 110 ~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 189 (453)
.+..+|++++|++.+.+.+.++||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.... .++++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~-----~~~~~ 92 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL-----NKIQA 92 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS-----CSCCE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc-----CCccE
Confidence 3456899999999999999999999999999999999999999999999999999999999998775431 35679
Q ss_pred EEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC---------C-------------------------------
Q psy9620 190 LVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP---------Q------------------------------- 229 (453)
Q Consensus 190 lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---------~------------------------------- 229 (453)
||++||++|+.|+.+.+++++...++++..++|+..... .
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 999999999999999999998888888888887754210 0
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHH
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 289 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 289 (453)
...|++++|||++..+......++.++..+..... .....+.+.+.......+...+.
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~ 250 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLN 250 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHH
Confidence 46799999999999999888888887766544322 23355666676666666766666
Q ss_pred HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 290 ~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
.++... ...++||||++++.++.+++.|...++.+..+|++|++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 251 ~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~ 327 (400)
T 1s2m_A 251 TLFSKL---QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 327 (400)
T ss_dssp HHHHHS---CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTE
T ss_pred HHHhhc---CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCC
Confidence 666653 45699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHH
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLS 431 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~ 431 (453)
++||++|+|.+..+|+||+||+||.|++|.|++|+++.+...++++.+.+....+++|..+.
T Consensus 328 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 389 (400)
T 1s2m_A 328 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATID 389 (400)
T ss_dssp EEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCC
T ss_pred CEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccccc
Confidence 99999999999999999999999999999999999999999999988888777777766544
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5.8e-48 Score=399.20 Aligned_cols=300 Identities=27% Similarity=0.420 Sum_probs=243.3
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh--cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH
Q psy9620 120 FPDYVLKEVKRQGFDRPTPIQAQGWPIAM--SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 120 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~ 197 (453)
|++.+++.+.++||..|+|+|.++|+.++ .++|+|++||||||||++|++|++..+...... ...++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 678999999999999999999999998765432 234678999999999
Q ss_pred HHHHHHHHHHHhcC----CCCceEEEEeCCccCCC----------C----------------------------------
Q psy9620 198 LAQQIQEVARDFGS----STYLRSTCVYGGASKGP----------Q---------------------------------- 229 (453)
Q Consensus 198 La~q~~~~~~~~~~----~~~~~~~~~~gg~~~~~----------~---------------------------------- 229 (453)
||.|+++.++++.. ...+.+..++++..... +
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 99999999998642 12345666666654211 1
Q ss_pred -------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccccc---ccCccceeEEEEccc
Q psy9620 230 -------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTL---SANHNIQQVVEVCAE 281 (453)
Q Consensus 230 -------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~ 281 (453)
...|++++|||++..+..++..++.++..+.+..... .....+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 2679999999999999999999888776655433221 222334444444332
Q ss_pred c-chhhh-HHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q psy9620 282 H-EKENK-LFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQERDYVLKEFRNGRAGILV 355 (453)
Q Consensus 282 ~-~k~~~-l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLv 355 (453)
. .+... +..+...+.. ....++||||+++..|+.++..|... ++.+..+|++|++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 1 22222 2222222222 34679999999999999999999986 89999999999999999999999999999999
Q ss_pred EeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHH
Q psy9620 356 ATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 356 aT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
||+++++|||+|+|++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+...++.+.+...
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999888888776643
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.3e-47 Score=378.61 Aligned_cols=309 Identities=27% Similarity=0.476 Sum_probs=267.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
.+|+++++++.+++.|+++||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999876442 235679999
Q ss_pred cCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCC----------C--------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGP----------Q-------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~----------~-------------------------------- 229 (453)
+||++|+.|+.+.+.++.... ++++..++|+..... .
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999997665 688888887754210 1
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHH
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 289 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 289 (453)
...|++++|||++..+..++..++.++..+.+..........+.+.+.......+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 468999999999999999999999888877766544444456677777777777777777
Q ss_pred HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC
Q psy9620 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 290 ~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 369 (453)
.++... ...++||||+++..++.+++.|...++.+..+|+++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 243 ~~l~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~ 319 (391)
T 1xti_A 243 DLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV 319 (391)
T ss_dssp HHHHHS---CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTE
T ss_pred HHHHhc---CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccC
Confidence 777654 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCC-hHHHHHHHHHHHhcCCCCChH
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQN-SRQAKDLIDVLTESNHPVDPK 429 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~v~~~ 429 (453)
++||++++|.+..+|+||+||+||.|++|.|++|+++.+ ...++.+.+.+....+++|..
T Consensus 320 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 320 NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999999999999999999999999999999764 455666766666666666654
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.8e-47 Score=377.84 Aligned_cols=310 Identities=28% Similarity=0.472 Sum_probs=260.0
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCC
Q psy9620 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDG 186 (453)
Q Consensus 109 p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 186 (453)
+.++.+|+++++++.+++.+.++||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+.... .+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-----~~ 95 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-----KY 95 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS-----CS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC-----CC
Confidence 346788999999999999999999999999999999999987 99999999999999999999998875432 46
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC------------------------------------
Q psy9620 187 PIVLVLAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ------------------------------------ 229 (453)
Q Consensus 187 ~~vlil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~------------------------------------ 229 (453)
+++||++||++|+.|+.+.++++.... ++.+....++......
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViD 175 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEe
Confidence 689999999999999999999987653 5666666655432211
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc-cchh
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKE 285 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~ 285 (453)
...|++++|||++..+..++..++.++..+.+.... .....+.+.+..... ..+.
T Consensus 176 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 254 (412)
T 3fht_A 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSSRDEKF 254 (412)
T ss_dssp THHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGG-SSCTTEEEEEEECSSHHHHH
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccc-ccccCceEEEEEcCChHHHH
Confidence 567999999999999999999999888777665544 233445555544433 3455
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLD 365 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiD 365 (453)
..+..++... ...++||||+++..|+.+++.|...++.+..+|++|++.+|..+++.|++|+.+|||||+++++|||
T Consensus 255 ~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 331 (412)
T 3fht_A 255 QALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 331 (412)
T ss_dssp HHHHHHHHHH---SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCC
T ss_pred HHHHHHHhhc---CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCC
Confidence 5555555543 4569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCC------CChhHHHHhhhcccCCCCcceEEEEEcCCC-hHHHHHHHHHHHhcCCCCC
Q psy9620 366 VDDVKFVINFDYP------NNSEDYIHRIGRTGRSDNTGTSYTFFTQQN-SRQAKDLIDVLTESNHPVD 427 (453)
Q Consensus 366 ip~v~~VI~~d~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~v~ 427 (453)
+|++++||+||+| .+..+|+||+||+||.|+.|.|++|+++.+ ...++.+.+.++...++++
T Consensus 332 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 332 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp CTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred ccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 9999999999999 577999999999999999999999998765 6777777777776655554
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.8e-46 Score=370.72 Aligned_cols=301 Identities=30% Similarity=0.518 Sum_probs=251.9
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
...+|++++|++.+++.+.+.||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+.... .+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-----~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED-----ASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC-----CSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC-----CCcc
Confidence 3578999999999999999999999999999999999987 99999999999999999999998875432 4668
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------- 229 (453)
+||++||++|+.|+.+.+++++...++.+...+++......
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~ 157 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNM 157 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhh
Confidence 99999999999999999999988788888777766433221
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcc-ccchhhhHHH
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCA-EHEKENKLFG 290 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ 290 (453)
...|++++|||+++.+..+...++.++..+........ ...+.+.+.... ...+...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 236 (395)
T 3pey_A 158 LDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVN-VDAIKQLYMDCKNEADKFDVLTE 236 (395)
T ss_dssp HHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCS-CTTEEEEEEECSSHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccc-cccccEEEEEcCchHHHHHHHHH
Confidence 56899999999999999999999888777665554422 334444444443 3334444444
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
++.. ....++||||+++..|+.+++.|...++.+..+|++|++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 237 ~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 313 (395)
T 3pey_A 237 LYGL---MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVS 313 (395)
T ss_dssp HHTT---TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEE
T ss_pred HHHh---ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCC
Confidence 4433 3457999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC------ChhHHHHhhhcccCCCCcceEEEEEcCCCh-HHHHHHHHHHH
Q psy9620 371 FVINFDYPN------NSEDYIHRIGRTGRSDNTGTSYTFFTQQNS-RQAKDLIDVLT 420 (453)
Q Consensus 371 ~VI~~d~p~------s~~~y~qr~GRagR~g~~g~~~~~~~~~~~-~~~~~l~~~l~ 420 (453)
+||+||+|. +..+|+||+||+||.|++|.|++|+++.+. ...+.+.+.+.
T Consensus 314 ~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 314 MVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp EEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 999999998 999999999999999999999999987554 34444444443
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.9e-46 Score=363.33 Aligned_cols=300 Identities=34% Similarity=0.611 Sum_probs=259.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG-SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
..+|++++|++.+++.++++||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+... .++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 357999999999999999999999999999999999988 7999999999999999999998876532 466799
Q ss_pred EEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC--------C---------------------------------
Q psy9620 191 VLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP--------Q--------------------------------- 229 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~--------~--------------------------------- 229 (453)
|++|+++|+.|+.+.+.++....++++..++++..... .
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 99999999999999999998877888888877754211 0
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHH
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGL 291 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 291 (453)
...+++++|||++.........++.++..+... ....+.+.+......++...+..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~ 233 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK-----INANIEQSYVEVNENERFEALCRL 233 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC-----SSSSSEEEEEECCGGGHHHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec-----CCCCceEEEEEeChHHHHHHHHHH
Confidence 568999999999999988888888876654432 223556666666655665555555
Q ss_pred HHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcE
Q psy9620 292 LNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKF 371 (453)
Q Consensus 292 l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~ 371 (453)
+. ....++||||+++..++.+++.|...++.+..+|++++..+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 234 l~----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~ 309 (367)
T 1hv8_A 234 LK----NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNC 309 (367)
T ss_dssp HC----STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSE
T ss_pred Hh----cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCE
Confidence 43 45679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCC
Q psy9620 372 VINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPV 426 (453)
Q Consensus 372 VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v 426 (453)
||++++|.+..+|+||+||+||.|++|.|++++++.+...++.+.+.++..-+++
T Consensus 310 Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 310 VINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp EEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred EEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 9999999999999999999999999999999999999999988888776655443
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.6e-46 Score=386.33 Aligned_cols=299 Identities=27% Similarity=0.429 Sum_probs=243.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh--cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH
Q psy9620 120 FPDYVLKEVKRQGFDRPTPIQAQGWPIAM--SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 120 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~ 197 (453)
|++.+++.++++||..|+|+|.++|+.++ .++|+|++||||+|||++|++|++..+..... ....++++|||+||++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCCCeEEEEcchHH
Confidence 99999999999999999999999999999 78999999999999999999999998876542 2234678999999999
Q ss_pred HHHHHHHHHHHhcC----CCCceEEEEeCCccCCC----------C----------------------------------
Q psy9620 198 LAQQIQEVARDFGS----STYLRSTCVYGGASKGP----------Q---------------------------------- 229 (453)
Q Consensus 198 La~q~~~~~~~~~~----~~~~~~~~~~gg~~~~~----------~---------------------------------- 229 (453)
|+.|+.+.+.++.. ...+.+..++++..... .
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 99999999998752 23355666666653211 1
Q ss_pred -------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccccc---ccCccceeEEEEccc
Q psy9620 230 -------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTL---SANHNIQQVVEVCAE 281 (453)
Q Consensus 230 -------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~ 281 (453)
..+|+++||||+++.+..++..++.++..+.+..... .....+.+.+.....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 2679999999999999999999988876655443221 222334444444432
Q ss_pred c-chh-hhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q psy9620 282 H-EKE-NKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQERDYVLKEFRNGRAGILV 355 (453)
Q Consensus 282 ~-~k~-~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLv 355 (453)
. .+. ..+..+...+.. ....++||||+++..|+.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 2 222 222223333322 34679999999999999999999987 89999999999999999999999999999999
Q ss_pred EeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHH
Q psy9620 356 ATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVL 419 (453)
Q Consensus 356 aT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l 419 (453)
||+++++|||+|+|++||++|+|.+.+.|+||+|||||.|+.|.|++|+++.+...++.+.+..
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988888877654
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=6.9e-48 Score=390.81 Aligned_cols=308 Identities=28% Similarity=0.470 Sum_probs=124.4
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
++.+|++++|++.+++.+.++||..|+|+|.++|+.++++ +++|++||||||||++|++|++..+.... .+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-----~~~~ 164 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-----KYPQ 164 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS-----CSCC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC-----CCCc
Confidence 4678999999999999999999999999999999999986 99999999999999999999998775432 4668
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC--------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ-------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~-------------------------------------- 229 (453)
+|||+||++|+.|+++.+.++.... .+.+.+..++......
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEa 244 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCH
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECH
Confidence 9999999999999999999886543 4555555554332111
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccc-cchhhh
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENK 287 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~ 287 (453)
..+|++++|||++..+..++..++.++..+.+..... ....+.+.+..+.. ..+...
T Consensus 245 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 323 (479)
T 3fmp_B 245 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQA 323 (479)
T ss_dssp HHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------
T ss_pred HHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc-CcCCceEEEEEeCCHHHHHHH
Confidence 5689999999999999999999999888777665442 23344444444432 334444
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD 367 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip 367 (453)
+..++.. ....++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 324 l~~~~~~---~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip 400 (479)
T 3fmp_B 324 LCNLYGA---ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 400 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhh---ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccc
Confidence 4444433 2456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCC------CChhHHHHhhhcccCCCCcceEEEEEcCCC-hHHHHHHHHHHHhcCCCCC
Q psy9620 368 DVKFVINFDYP------NNSEDYIHRIGRTGRSDNTGTSYTFFTQQN-SRQAKDLIDVLTESNHPVD 427 (453)
Q Consensus 368 ~v~~VI~~d~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~v~ 427 (453)
++++||+||+| .+..+|+||+|||||.|+.|.|++|+++.+ ...++.+.+.+...-..++
T Consensus 401 ~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 401 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp -------------------------------------------------------------------
T ss_pred cCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 99999999999 467899999999999999999999999765 6666666666655544443
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3e-48 Score=383.53 Aligned_cols=317 Identities=32% Similarity=0.531 Sum_probs=131.7
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
...+..+|+++++++.+++.+.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.... .++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~-----~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-----KAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC-----CSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC-----CCC
Confidence 456678899999999999999999999999999999999999999999999999999999999998875432 467
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------- 229 (453)
++||++||++|+.|+.+.+.++....++++..++|+......
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDE 170 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 170 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEC
Confidence 899999999999999999999988888888888887542110
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcccc-chhhh
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH-EKENK 287 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~ 287 (453)
+..|++++|||++..+..+...++.++..+........ ...+.+.+..+... .+...
T Consensus 171 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 171 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELT-LEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-------------------------
T ss_pred hHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcccc-CCCceEEEEEcCchhhHHHH
Confidence 56899999999999999988888888877665543322 22333333333322 24444
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD 367 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip 367 (453)
+..++... ...++||||++++.++.+++.|...++.+..+|+++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 250 l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~ 326 (394)
T 1fuu_A 250 LTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQ 326 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcC---CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcc
Confidence 55554432 456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHHHHH
Q psy9620 368 DVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSAL 433 (453)
Q Consensus 368 ~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l~~~ 433 (453)
++++||++|+|.+..+|+||+||+||.|++|.|++|+++++...++.+.+++.....++|..+.++
T Consensus 327 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (394)
T 1fuu_A 327 QVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL 392 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred cCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhh
Confidence 999999999999999999999999999999999999999999999999888888877787766654
No 14
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2e-44 Score=370.72 Aligned_cols=287 Identities=21% Similarity=0.331 Sum_probs=227.9
Q ss_pred ccccc--ccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 112 ITEFA--EANFPDYVLKEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 112 ~~~f~--~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
...|. ++++++.+.+.|++ +||..|+|+|.++|+.+++++|+|+++|||+|||++|++|++.. .++
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~ 86 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGF 86 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSE
T ss_pred hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCc
Confidence 34444 57788999999998 59999999999999999999999999999999999999999842 457
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCC---------------CC------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKG---------------PQ------------------------ 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~---------------~~------------------------ 229 (453)
+|||+|+++|+.|+.+.+.+++ +++..+.++.... ..
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQLG----ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHHT----CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHhcC----CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 9999999999999999999872 4444444432110 00
Q ss_pred ------------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccce
Q psy9620 230 ------------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQ 273 (453)
Q Consensus 230 ------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (453)
+..+++++|||+++.+...+..++.......+... ....++.
T Consensus 163 ~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~--~~r~nl~ 240 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS--FNRPNLY 240 (591)
T ss_dssp TTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC--CCCTTEE
T ss_pred ccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC--CCCcccE
Confidence 57899999999999988777777654322222111 1122333
Q ss_pred eEEEEccccchhhhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCc
Q psy9620 274 QVVEVCAEHEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAG 352 (453)
Q Consensus 274 ~~~~~~~~~~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 352 (453)
..+.... ..+...+..++..+.. ....++||||++++.++.++..|...++.+..+|++|++.+|..++++|++|+.+
T Consensus 241 ~~v~~~~-~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~ 319 (591)
T 2v1x_A 241 YEVRQKP-SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ 319 (591)
T ss_dssp EEEEECC-SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS
T ss_pred EEEEeCC-CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe
Confidence 2222221 1122333333333322 2467999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHH
Q psy9620 353 ILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 353 vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 416 (453)
|||||+++++|||+|+|++||||++|.|++.|+||+|||||.|.+|.|++|+++.|...++.++
T Consensus 320 VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 320 VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988776665554
No 15
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.2e-43 Score=361.27 Aligned_cols=281 Identities=21% Similarity=0.378 Sum_probs=229.4
Q ss_pred ccccccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
.+|++++|++.+.+.|++ +||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. ...+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 579999999999999998 79999999999999999999999999999999999999999842 346999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC-------------C-----------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP-------------Q----------------------------- 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~-------------~----------------------------- 229 (453)
|+|+++|+.|+.+.+.+++ +.+..+.++..... .
T Consensus 71 i~P~~aL~~q~~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQANG----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp ECSCHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred ECChHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 9999999999999998863 44554444332110 0
Q ss_pred --------------------------CCceEEEEeccCcHHHHHHHHHhh--ccceEEEecccccccCccceeEEEEccc
Q psy9620 230 --------------------------PDRQVLMWSATWPREVQKLAEDFL--DSYIQINIGSLTLSANHNIQQVVEVCAE 281 (453)
Q Consensus 230 --------------------------~~~q~v~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 281 (453)
+..+++++|||++..+...+...+ .++. +.+... ...++. +.....
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~~---~r~~l~--~~v~~~ 220 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPL-IQISSF---DRPNIR--YMLMEK 220 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCE-EEECCC---CCTTEE--EEEEEC
T ss_pred CccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCe-EEeCCC---CCCceE--EEEEeC
Confidence 568999999999988765444333 2333 222221 122332 222333
Q ss_pred cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc
Q psy9620 282 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA 361 (453)
Q Consensus 282 ~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 361 (453)
..+...+..++.. ....++||||+|++.++.+++.|...++.+..+|++|++.+|..+++.|++|+.+|||||++++
T Consensus 221 ~~~~~~l~~~l~~---~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~ 297 (523)
T 1oyw_A 221 FKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297 (523)
T ss_dssp SSHHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC
T ss_pred CCHHHHHHHHHHh---cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 4445555555543 3567999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHH
Q psy9620 362 RGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLID 417 (453)
Q Consensus 362 ~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~ 417 (453)
+|||+|+|++|||+|+|.|+++|+||+||+||.|.+|.|++|+++.|....+.+++
T Consensus 298 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888777666554
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-45 Score=372.49 Aligned_cols=312 Identities=28% Similarity=0.467 Sum_probs=207.8
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCC
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGD 185 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 185 (453)
.|.++..|...++++.+++.+.+.||..|+++|.++|+.++++ +++|+++|||||||++|++|++..+.... .
T Consensus 114 ~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~-----~ 188 (508)
T 3fho_A 114 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV-----P 188 (508)
T ss_dssp -------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC-----C
T ss_pred cccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC-----C
Confidence 4556677778889999999999999999999999999999987 99999999999999999999998875432 3
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------------
Q psy9620 186 GPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------ 229 (453)
Q Consensus 186 ~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------ 229 (453)
++++|||+|+++|+.|+.+.+++++....+.+....++......
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEa 268 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEA 268 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCH
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEech
Confidence 66899999999999999999999976665555444433221110
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEc-cccchhhh
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVC-AEHEKENK 287 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~k~~~ 287 (453)
...|++++|||++..+..+...++.++..+.+....... ..+.+.+... ....+...
T Consensus 269 H~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~k~~~ 347 (508)
T 3fho_A 269 DNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSV-EGIKQLYMDCQSEEHKYNV 347 (508)
T ss_dssp HHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHHHHHH
T ss_pred hhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCc-ccceEEEEECCchHHHHHH
Confidence 478999999999999999999998888776655443222 3344444333 33334444
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD 367 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip 367 (453)
+..++.. ....++||||+++..|+.++..|...++.+..+|+++++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 348 l~~ll~~---~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip 424 (508)
T 3fho_A 348 LVELYGL---LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVS 424 (508)
T ss_dssp HHHHHC------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCT
T ss_pred HHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCcc
Confidence 4444433 3467999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCC------CChhHHHHhhhcccCCCCcceEEEEEcC-CChHHHHHHHHHHHhcCCCCCh
Q psy9620 368 DVKFVINFDYP------NNSEDYIHRIGRTGRSDNTGTSYTFFTQ-QNSRQAKDLIDVLTESNHPVDP 428 (453)
Q Consensus 368 ~v~~VI~~d~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~v~~ 428 (453)
++++||++|+| .+..+|+||+||+||.|++|.|++|+++ ++...++.+.+.+....+.++.
T Consensus 425 ~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 425 QVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp TCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 99999999999 8899999999999999999999999985 4566677777777666665554
No 17
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.1e-43 Score=339.22 Aligned_cols=276 Identities=33% Similarity=0.532 Sum_probs=230.2
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHH
Q psy9620 120 FPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELA 199 (453)
Q Consensus 120 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La 199 (453)
|++.+.+.++++||..|+|+|.++++.+++++++++++|||+|||++|++|++.. ++++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5789999999999999999999999999999999999999999999999998863 44699999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCccCCC--------C------------------------------------------
Q psy9620 200 QQIQEVARDFGSSTYLRSTCVYGGASKGP--------Q------------------------------------------ 229 (453)
Q Consensus 200 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~--------~------------------------------------------ 229 (453)
.|+.+.+++++...++++..++++..... .
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~ 149 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDD 149 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHH
Confidence 99999999998888888888888754211 1
Q ss_pred ---------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCC
Q psy9620 230 ---------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDE 300 (453)
Q Consensus 230 ---------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 300 (453)
...+++++|||++..+.+....++.++..+... .....+.+.+...... .......+ .....
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~ 220 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDD--WRSKVQAL---RENKD 220 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSS--SHHHHHHH---HTCCC
T ss_pred HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChH--HHHHHHHH---HhCCC
Confidence 467889999999999999999888877655332 1223344444333322 22222333 33456
Q ss_pred CcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNN 380 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s 380 (453)
.++||||++++.++.+++.|. .+..+|++++..+|..++++|++|+.+|||||+++++|+|+|++++||++++|.+
T Consensus 221 ~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s 296 (337)
T 2z0m_A 221 KGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQD 296 (337)
T ss_dssp SSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSS
T ss_pred CcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCC
Confidence 799999999999999999886 5789999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHH
Q psy9620 381 SEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 381 ~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
..+|+||+||+||.|++|.|++|+. .+....+.+.+.++
T Consensus 297 ~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 297 LRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred HHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999999 78788887776654
No 18
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.9e-39 Score=344.08 Aligned_cols=285 Identities=21% Similarity=0.253 Sum_probs=218.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
+|++++|++.+.+.+++.||..|+++|.++++. +.+++++++++|||||||++|.+|++..+... +.++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 689999999999999999999999999999998 88999999999999999999999999887642 5689999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
+|+++|+.|+++.++++.. .++++..++|+......
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~ 153 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSR 153 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCC
Confidence 9999999999999976543 47888888887654331
Q ss_pred --------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEcccc-chhhhHHHHHHh
Q psy9620 230 --------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH-EKENKLFGLLND 294 (453)
Q Consensus 230 --------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~ 294 (453)
.+.|+|++|||++. ...+++++....+..................+...... .....+..++..
T Consensus 154 ~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (720)
T 2zj8_A 154 DRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYD 232 (720)
T ss_dssp TTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHH
T ss_pred cccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHH
Confidence 36899999999975 45555554322111100000000000000011111100 001122223332
Q ss_pred hhcCCCCcEEEEEcchhHHHHHHHHHHhc---------------------------------CCeEEEEcCCCCHHHHHH
Q psy9620 295 ISSKDENKTIIFAETKRKVDKITKSIQNY---------------------------------GWAAVGIHGDKSQQERDY 341 (453)
Q Consensus 295 ~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------------------------------~~~~~~~h~~~~~~~r~~ 341 (453)
... ..+++||||+++++|+.++..|.+. ...+.++|++|++.+|..
T Consensus 233 ~~~-~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 311 (720)
T 2zj8_A 233 AIR-KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVL 311 (720)
T ss_dssp HHH-TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred HHh-CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHH
Confidence 222 3579999999999999999998753 124899999999999999
Q ss_pred HHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cC----CCCChhHHHHhhhcccCCC--CcceEEEEEcCCC
Q psy9620 342 VLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FD----YPNNSEDYIHRIGRTGRSD--NTGTSYTFFTQQN 408 (453)
Q Consensus 342 ~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d----~p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~~ 408 (453)
+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 312 v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 312 VEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp HHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred HHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 999999999999999999999999999999998 77 5899999999999999987 5799999999877
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.3e-39 Score=339.27 Aligned_cols=287 Identities=20% Similarity=0.292 Sum_probs=216.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 112 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
..+|++++|++.+.+.+++.||..|+|+|.++++. +.++++++++||||||||+++.++++..+.. .+.++|
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------~~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------NGGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-------SCSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-------CCCeEE
Confidence 35799999999999999999999999999999999 7789999999999999999999999988764 256899
Q ss_pred EEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-----------------------------------------
Q psy9620 191 VLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ----------------------------------------- 229 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------------------------------- 229 (453)
|++|+++||.|+++.++.+. ..++++..++|+......
T Consensus 80 ~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN 158 (715)
T ss_dssp EECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG
T ss_pred EEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC
Confidence 99999999999999996553 347788888887654431
Q ss_pred ---------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccc------cCccceeEEEEcccc----ch
Q psy9620 230 ---------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLS------ANHNIQQVVEVCAEH----EK 284 (453)
Q Consensus 230 ---------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~----~k 284 (453)
.+.|+|++|||++. ...+++++....+.......... ........+.+.... ..
T Consensus 159 ~~~~~~~l~~i~~~~~~~~ii~lSATl~n-~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (715)
T 2va8_A 159 DPERGPVVESVTIRAKRRNLLALSATISN-YKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHG 237 (715)
T ss_dssp CTTTHHHHHHHHHHHHTSEEEEEESCCTT-HHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred CcccchHHHHHHHhcccCcEEEEcCCCCC-HHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhccc
Confidence 46899999999964 45666655322111110000000 000000011111100 00
Q ss_pred hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcC------------------------------------CeEE
Q psy9620 285 ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG------------------------------------WAAV 328 (453)
Q Consensus 285 ~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~------------------------------------~~~~ 328 (453)
...+..++..... ..+++||||+++++++.++..|.... ..+.
T Consensus 238 ~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~ 316 (715)
T 2va8_A 238 DDAIIAYTLDSLS-KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVA 316 (715)
T ss_dssp SSHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEE
T ss_pred chHHHHHHHHHHh-cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEE
Confidence 1233334433332 46799999999999999999998642 2489
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cC-------CCCChhHHHHhhhcccCCC--
Q psy9620 329 GIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FD-------YPNNSEDYIHRIGRTGRSD-- 395 (453)
Q Consensus 329 ~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d-------~p~s~~~y~qr~GRagR~g-- 395 (453)
++|++|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|+||+|||||.|
T Consensus 317 ~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~ 396 (715)
T 2va8_A 317 YHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD 396 (715)
T ss_dssp EECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTC
T ss_pred EECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999 99 8999999999999999987
Q ss_pred CcceEEEEEcCCC
Q psy9620 396 NTGTSYTFFTQQN 408 (453)
Q Consensus 396 ~~g~~~~~~~~~~ 408 (453)
..|.|++++++.+
T Consensus 397 ~~G~~~~l~~~~~ 409 (715)
T 2va8_A 397 QIGESIVVVRDKE 409 (715)
T ss_dssp SCEEEEEECSCGG
T ss_pred CCceEEEEeCCch
Confidence 4799999998765
No 20
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.5e-39 Score=320.89 Aligned_cols=267 Identities=25% Similarity=0.326 Sum_probs=211.2
Q ss_pred HHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHH
Q psy9620 124 VLKEVKR-QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202 (453)
Q Consensus 124 l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~ 202 (453)
+.+.+++ .+| +|+|+|.++++.+++++|+++++|||||||++|++|++..+. .++++|||+||++|+.|+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~--------~~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc--------CCCEEEEEECCHHHHHHH
Confidence 3444544 366 899999999999999999999999999999999999887652 467899999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCccCC-------------CC----------------------------------------
Q psy9620 203 QEVARDFGSSTYLRSTCVYGGASKG-------------PQ---------------------------------------- 229 (453)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~gg~~~~-------------~~---------------------------------------- 229 (453)
.+.+++++. .++++..++|+.+.. ..
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d 159 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNID 159 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHH
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhh
Confidence 999999987 778888888876540 11
Q ss_pred --------------------------------CCceEEEEecc-CcHHHH-HHHHHhhccceEEEecccccccCccceeE
Q psy9620 230 --------------------------------PDRQVLMWSAT-WPREVQ-KLAEDFLDSYIQINIGSLTLSANHNIQQV 275 (453)
Q Consensus 230 --------------------------------~~~q~v~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 275 (453)
...|++++||| +|..+. .+...++. +.+.... .....+.+.
T Consensus 160 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~i~~~ 234 (414)
T 3oiy_A 160 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHV 234 (414)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCC-CCCCSEEEE
T ss_pred hHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccc-cccccchhe
Confidence 22588899999 565443 22233322 1111111 222344444
Q ss_pred EEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEE-EEcCCCCHHHHHHHHHHHhcCCCcEE
Q psy9620 276 VEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAV-GIHGDKSQQERDYVLKEFRNGRAGIL 354 (453)
Q Consensus 276 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~~h~~~~~~~r~~~~~~f~~g~~~vL 354 (453)
+... ++...+..++... ..++||||+++..|+.++..|...++.+. .+||. +|. ++.|++|+++||
T Consensus 235 ~~~~---~~~~~l~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 235 RISS---RSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp EESS---CCHHHHHHHHHHH----CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred eecc---CHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 4333 4666677777662 47999999999999999999999999998 89994 444 999999999999
Q ss_pred EE----eccCccCCCCCC-CcEEEEcCCC--CChhHHHHhhhcccCCC----CcceEEEEEcCCChHHHHHHHHHHH
Q psy9620 355 VA----TDVAARGLDVDD-VKFVINFDYP--NNSEDYIHRIGRTGRSD----NTGTSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 355 va----T~~~~~GiDip~-v~~VI~~d~p--~s~~~y~qr~GRagR~g----~~g~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
|| |+++++|||+|+ |++||+||+| .+..+|+||+||+||.| ..|.|++|+ .+...++.+.+.+.
T Consensus 302 vat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 302 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 99 999999999999 9999999999 99999999999999987 579999998 66777777777777
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=5.4e-39 Score=339.69 Aligned_cols=278 Identities=22% Similarity=0.299 Sum_probs=215.0
Q ss_pred cccccC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 114 EFAEAN--FPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 114 ~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
+|++++ |++.+.+.+++.||..|+|+|.++++.++++++++++||||||||++|.+|++..+.. ++++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 578888 9999999999999999999999999999999999999999999999999999987653 456999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------ 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------ 229 (453)
++|+++||.|+++.++.+. ..++++..++|+......
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~ 152 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDS 152 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGC
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCC
Confidence 9999999999999996553 457888888887654331
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeE------EEEccccc--
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQV------VEVCAEHE-- 283 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~-- 283 (453)
++.|+|++|||++. ...+++++....+...... ..+... +.......
T Consensus 153 ~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~~~~~~~~~r~------~~l~~~~~~~~~~~~~~~~~~~ 225 (702)
T 2p6r_A 153 EKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLDADYYVSDWRP------VPLVEGVLCEGTLELFDGAFST 225 (702)
T ss_dssp TTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTTCEEEECCCCS------SCEEEEEECSSEEEEEETTEEE
T ss_pred CCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhCCCcccCCCCC------ccceEEEeeCCeeeccCcchhh
Confidence 46899999999974 5666665542221111110 111111 11111110
Q ss_pred -hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc------------------------------CCeEEEEcC
Q psy9620 284 -KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY------------------------------GWAAVGIHG 332 (453)
Q Consensus 284 -k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------~~~~~~~h~ 332 (453)
+...+..++..... ..+++||||+++++++.++..|... ...+.++|+
T Consensus 226 ~~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~ 304 (702)
T 2p6r_A 226 SRRVKFEELVEECVA-ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA 304 (702)
T ss_dssp EEECCHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECT
T ss_pred hhhhhHHHHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecC
Confidence 11112333333322 4679999999999999999998753 135788999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cC---CCCChhHHHHhhhcccCCC--CcceEEEE
Q psy9620 333 DKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FD---YPNNSEDYIHRIGRTGRSD--NTGTSYTF 403 (453)
Q Consensus 333 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d---~p~s~~~y~qr~GRagR~g--~~g~~~~~ 403 (453)
+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|+++
T Consensus 305 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 384 (702)
T 2p6r_A 305 GLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIII 384 (702)
T ss_dssp TSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999998 76 7899999999999999997 47999999
Q ss_pred EcCCC
Q psy9620 404 FTQQN 408 (453)
Q Consensus 404 ~~~~~ 408 (453)
+++.+
T Consensus 385 ~~~~~ 389 (702)
T 2p6r_A 385 VGKRD 389 (702)
T ss_dssp CCGGG
T ss_pred ecCcc
Confidence 98876
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-38 Score=345.18 Aligned_cols=280 Identities=16% Similarity=0.183 Sum_probs=213.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
..|...++++.+...+...++..|+++|.++|+.+++++++|++||||||||++|++|++..+. .++++||+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------~g~rvlvl 233 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYT 233 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--------TTCEEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--------cCCeEEEE
Confidence 3566677777666666566666899999999999999999999999999999999999998874 36689999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------------- 229 (453)
+||++|+.|+++.+.+++. .+..++|+......
T Consensus 234 ~PtraLa~Q~~~~l~~~~~----~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~ 309 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG----DVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGV 309 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS----SEEEECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhC----CccEEeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHH
Confidence 9999999999999999864 56667777665443
Q ss_pred ----------CCceEEEEeccCcHH--HHHHHHHhhccceEEEecccccccCccceeEEEE---------ccccc-----
Q psy9620 230 ----------PDRQVLMWSATWPRE--VQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEV---------CAEHE----- 283 (453)
Q Consensus 230 ----------~~~q~v~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~----- 283 (453)
...|+|+||||+|.. +..++..+...+..+...... ...+...+.. +....
T Consensus 310 ~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~vd~~~~~~~~ 386 (1108)
T 3l9o_A 310 VWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFREE 386 (1108)
T ss_dssp HHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC---SSCEEEEEEETTSSCCEEEEETTTEECHH
T ss_pred HHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC---cccceEEEeecCCcceeeeeccccchhhh
Confidence 578999999999764 335555555554444332211 1111111110 00000
Q ss_pred --------------------------------------hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCC
Q psy9620 284 --------------------------------------KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW 325 (453)
Q Consensus 284 --------------------------------------k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~ 325 (453)
....+..++..+......++||||+++..|+.++..|...++
T Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~ 466 (1108)
T 3l9o_A 387 NFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDF 466 (1108)
T ss_dssp HHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHH
T ss_pred hHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccC
Confidence 033445555555555567999999999999999999864322
Q ss_pred e---------------------------------------EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCC
Q psy9620 326 A---------------------------------------AVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDV 366 (453)
Q Consensus 326 ~---------------------------------------~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDi 366 (453)
. +..+||+|++.+|..+++.|++|.++|||||+++++|||+
T Consensus 467 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDi 546 (1108)
T 3l9o_A 467 NSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM 546 (1108)
T ss_dssp HCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC
T ss_pred CCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCC
Confidence 2 7899999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCC--------CCChhHHHHhhhcccCCC--CcceEEEEEcCC
Q psy9620 367 DDVKFVINFDY--------PNNSEDYIHRIGRTGRSD--NTGTSYTFFTQQ 407 (453)
Q Consensus 367 p~v~~VI~~d~--------p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~ 407 (453)
|++++||+++. |.|..+|+||+|||||.| ..|.|++++++.
T Consensus 547 P~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 547 PAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp --CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999997765 347788999999999998 678999998876
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.9e-39 Score=341.41 Aligned_cols=283 Identities=22% Similarity=0.249 Sum_probs=177.3
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 126 KEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 126 ~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
+++..+||..|+++|.++++.+++++|+|+++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+.+.
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHHH
Confidence 4566789999999999999999999999999999999999999999988765432 1236799999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCccCCCC--------------------------------------------------------
Q psy9620 206 ARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------------------------- 229 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------------------- 229 (453)
+++++...++++..++|+.....+
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999988788999999988754322
Q ss_pred -----------CCceEEEEeccCc-------HHHHHHHHHhh----------------------ccceEEEecccccc--
Q psy9620 230 -----------PDRQVLMWSATWP-------REVQKLAEDFL----------------------DSYIQINIGSLTLS-- 267 (453)
Q Consensus 230 -----------~~~q~v~~SAT~~-------~~~~~~~~~~~----------------------~~~~~~~~~~~~~~-- 267 (453)
+..+++++|||+. .+....+..++ ..+...........
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 2378999999986 22211111111 11110000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 268 -------------------------------------------------------------------------------- 267 (453)
Q Consensus 268 -------------------------------------------------------------------------------- 267 (453)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred ----------------------------cCccceeEEEE----------------ccccchhhhHHHHHHhhhc-CCCCc
Q psy9620 268 ----------------------------ANHNIQQVVEV----------------CAEHEKENKLFGLLNDISS-KDENK 302 (453)
Q Consensus 268 ----------------------------~~~~i~~~~~~----------------~~~~~k~~~l~~ll~~~~~-~~~~~ 302 (453)
....+.+.+.. .....|...|..++..... ....+
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 00000000000 0123345555555554422 24569
Q ss_pred EEEEEcchhHHHHHHHHHHhcC----CeEEEE--------cCCCCHHHHHHHHHHHhc-CCCcEEEEeccCccCCCCCCC
Q psy9620 303 TIIFAETKRKVDKITKSIQNYG----WAAVGI--------HGDKSQQERDYVLKEFRN-GRAGILVATDVAARGLDVDDV 369 (453)
Q Consensus 303 ~lVF~~s~~~~~~l~~~L~~~~----~~~~~~--------h~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v 369 (453)
+||||+++..++.+++.|...+ +.+..+ |++|++.+|..++++|++ |+.+|||||+++++|||+|+|
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999987 788888 569999999999999998 999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHH
Q psy9620 370 KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAK 413 (453)
Q Consensus 370 ~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~ 413 (453)
++||+||+|.|.++|+||+|| ||. ..|.|+++++..+.....
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp SEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHH
Confidence 999999999999999999999 998 789999999887664433
No 24
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2e-37 Score=319.81 Aligned_cols=273 Identities=22% Similarity=0.246 Sum_probs=157.4
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCC
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSS 212 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~ 212 (453)
..+|+|+|.++++.+++++|+++++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+.+.+++++..
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc---cCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 348999999999999999999999999999999999999988876432 23678999999999999999999999877
Q ss_pred CCceEEEEeCCccCCCC---------------------------------------------------------------
Q psy9620 213 TYLRSTCVYGGASKGPQ--------------------------------------------------------------- 229 (453)
Q Consensus 213 ~~~~~~~~~gg~~~~~~--------------------------------------------------------------- 229 (453)
.++++..++|+.....+
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 78899888888754432
Q ss_pred ---CCceEEEEeccCcH-----------HHHHHHHHhhccceEEEeccc-cc--ccCccceeEEEEc-------------
Q psy9620 230 ---PDRQVLMWSATWPR-----------EVQKLAEDFLDSYIQINIGSL-TL--SANHNIQQVVEVC------------- 279 (453)
Q Consensus 230 ---~~~q~v~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~i~~~~~~~------------- 279 (453)
+..+++++|||++. .+..+...+....+....... .. .............
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 23689999999842 121222221111111000000 00 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 280 -------------------------------------------------------------------------------- 279 (453)
Q Consensus 280 -------------------------------------------------------------------------------- 279 (453)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred -----------------------------------------------cccchhhhHHHHHHhhh-cCCCCcEEEEEcchh
Q psy9620 280 -----------------------------------------------AEHEKENKLFGLLNDIS-SKDENKTIIFAETKR 311 (453)
Q Consensus 280 -----------------------------------------------~~~~k~~~l~~ll~~~~-~~~~~~~lVF~~s~~ 311 (453)
....|...|.++|.... .....++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 01224444555554332 134679999999999
Q ss_pred HHHHHHHHHHhc------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccCccCCCCCCCcEEEEcCCC
Q psy9620 312 KVDKITKSIQNY------------GWAAVGIHGDKSQQERDYVLKEFRN-GRAGILVATDVAARGLDVDDVKFVINFDYP 378 (453)
Q Consensus 312 ~~~~l~~~L~~~------------~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 378 (453)
.++.+++.|... |.....+|++|++.+|..++++|++ |+++|||||+++++|||+|+|++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999875 4556667888999999999999999 999999999999999999999999999999
Q ss_pred CChhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 379 NNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 379 ~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
.|+..|+||+|| ||. .+|.|++|+++.+..
T Consensus 482 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp SCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999 999 889999999987653
No 25
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.6e-38 Score=354.20 Aligned_cols=300 Identities=15% Similarity=0.182 Sum_probs=225.7
Q ss_pred CCccccccccC---CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCC
Q psy9620 109 PNPITEFAEAN---FPDYVLKEVKRQGFDRPTPIQAQGWPIAMS-GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPG 184 (453)
Q Consensus 109 p~p~~~f~~~~---l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 184 (453)
+.++.++..++ |.+...+.+...+|..|+|+|.++++.++. ++|++++||||||||++|.+|++..+...
T Consensus 897 ~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------ 970 (1724)
T 4f92_B 897 PTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------ 970 (1724)
T ss_dssp CCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------
T ss_pred CCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------
Confidence 34444554443 556777778778899999999999999974 67899999999999999999999988764
Q ss_pred CCcEEEEEcCCHHHHHHHHHHHHH-hcCCCCceEEEEeCCccCCCC----------------------------------
Q psy9620 185 DGPIVLVLAPTRELAQQIQEVARD-FGSSTYLRSTCVYGGASKGPQ---------------------------------- 229 (453)
Q Consensus 185 ~~~~vlil~Ptr~La~q~~~~~~~-~~~~~~~~~~~~~gg~~~~~~---------------------------------- 229 (453)
.+.++||++|+++||.|+++.+.+ ++...++++..++|+...+..
T Consensus 971 ~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lv 1050 (1724)
T 4f92_B 971 SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLF 1050 (1724)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEE
T ss_pred CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEE
Confidence 355799999999999999998875 566688999888887543211
Q ss_pred -------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEE
Q psy9620 230 -------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEV 278 (453)
Q Consensus 230 -------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 278 (453)
.+.|+|++|||++ +..++++|+..+...+...... ..+..+...+..
T Consensus 1051 ViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~-N~~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~ 1128 (1724)
T 4f92_B 1051 VVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLS-NAKDVAHWLGCSATSTFNFHPN-VRPVPLELHIQG 1128 (1724)
T ss_dssp EECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBT-THHHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEE
T ss_pred EeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCC-CHHHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEe
Confidence 4689999999996 4677888775443222211111 112233444443
Q ss_pred ccccchhhhHHHHHHh----h-hcCCCCcEEEEEcchhHHHHHHHHHHhc------------------------------
Q psy9620 279 CAEHEKENKLFGLLND----I-SSKDENKTIIFAETKRKVDKITKSIQNY------------------------------ 323 (453)
Q Consensus 279 ~~~~~k~~~l~~ll~~----~-~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------ 323 (453)
.........+..+... + ......++||||+|++.|+.++..|...
T Consensus 1129 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L 1208 (1724)
T 4f92_B 1129 FNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTL 1208 (1724)
T ss_dssp ECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHH
T ss_pred ccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHH
Confidence 3333332222222111 1 1134679999999999999988876431
Q ss_pred ----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cC------CCCChhHHHHhhh
Q psy9620 324 ----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FD------YPNNSEDYIHRIG 389 (453)
Q Consensus 324 ----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d------~p~s~~~y~qr~G 389 (453)
...+.+||++|++.+|..+++.|++|.++|||||+++++|||+|++.+||. || .|.+..+|+||+|
T Consensus 1209 ~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~G 1288 (1724)
T 4f92_B 1209 KETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVG 1288 (1724)
T ss_dssp HHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHT
T ss_pred HHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhc
Confidence 235899999999999999999999999999999999999999999999993 32 3678999999999
Q ss_pred cccCCCC--cceEEEEEcCCChHHHHHHH
Q psy9620 390 RTGRSDN--TGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 390 RagR~g~--~g~~~~~~~~~~~~~~~~l~ 416 (453)
||||.|. .|.|++++.+.+...++.++
T Consensus 1289 RAGR~g~d~~G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1289 HANRPLQDDEGRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp TBCCTTTCSCEEEEEEEEGGGHHHHHHHT
T ss_pred cccCCCCCCceEEEEEecchHHHHHHHHh
Confidence 9999986 69999999988877776654
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=9.5e-38 Score=322.01 Aligned_cols=274 Identities=24% Similarity=0.294 Sum_probs=183.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY 214 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~ 214 (453)
+|+|+|.++++.+++++|+++++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+.+.+.+++...+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC---GQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---CCCCEEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 7999999999999999999999999999999999999988876432 2367799999999999999999999988788
Q ss_pred ceEEEEeCCccCCCC-----------------------------------------------------------------
Q psy9620 215 LRSTCVYGGASKGPQ----------------------------------------------------------------- 229 (453)
Q Consensus 215 ~~~~~~~gg~~~~~~----------------------------------------------------------------- 229 (453)
+++..++|+.....+
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 160 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGES 160 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSC
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccc
Confidence 999999998754432
Q ss_pred --CCceEEEEeccCcHH-----------HHHHHHHhhccceEEEecc---cccccCccceeEEEEc--------------
Q psy9620 230 --PDRQVLMWSATWPRE-----------VQKLAEDFLDSYIQINIGS---LTLSANHNIQQVVEVC-------------- 279 (453)
Q Consensus 230 --~~~q~v~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~-------------- 279 (453)
+..+++++|||++.. +..+...+....+...... ................
T Consensus 161 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T 3tbk_A 161 RDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQL 240 (555)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHH
Confidence 225899999998531 1112111110111100000 0000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 280 -------------------------------------------------------------------------------- 279 (453)
Q Consensus 280 -------------------------------------------------------------------------------- 279 (453)
T Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (555)
T 3tbk_A 241 MKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDA 320 (555)
T ss_dssp HHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence
Q ss_pred -----------------------------------------------cccchhhhHHHHHHhhhc-CCCCcEEEEEcchh
Q psy9620 280 -----------------------------------------------AEHEKENKLFGLLNDISS-KDENKTIIFAETKR 311 (453)
Q Consensus 280 -----------------------------------------------~~~~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~ 311 (453)
....|...+.++|..... ....++||||+++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~ 400 (555)
T 3tbk_A 321 QMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRA 400 (555)
T ss_dssp CHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHH
Confidence 012344455555554322 34579999999999
Q ss_pred HHHHHHHHHHhcC------------CeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccCccCCCCCCCcEEEEcCCC
Q psy9620 312 KVDKITKSIQNYG------------WAAVGIHGDKSQQERDYVLKEFRN-GRAGILVATDVAARGLDVDDVKFVINFDYP 378 (453)
Q Consensus 312 ~~~~l~~~L~~~~------------~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 378 (453)
.++.+++.|...+ .....+||+|++.+|..++++|++ |+++|||||+++++|||+|+|++||+||+|
T Consensus 401 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p 480 (555)
T 3tbk_A 401 LVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYV 480 (555)
T ss_dssp HHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCC
T ss_pred HHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCC
Confidence 9999999999763 344556679999999999999999 999999999999999999999999999999
Q ss_pred CChhHHHHhhhcccCCCCcceEEEEEcCCChHHHH
Q psy9620 379 NNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAK 413 (453)
Q Consensus 379 ~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~ 413 (453)
.|+..|+||+|| ||. ..|.+++|+++.+.....
T Consensus 481 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 481 GNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp SSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred CCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 999999999999 998 899999999987655443
No 27
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.2e-37 Score=321.28 Aligned_cols=313 Identities=17% Similarity=0.192 Sum_probs=224.3
Q ss_pred CccccCCCCCCcccCCCCHHHHHHHHHHcCCee-cccCCCccccccccCCCHHHHHHHH--------HCCCCCCCHHHHH
Q psy9620 72 PPFEKNFFHPSPSVLNRSPHEVQAFRDKHQMTL-KGNAPNPITEFAEANFPDYVLKEVK--------RQGFDRPTPIQAQ 142 (453)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~p~~~f~~~~l~~~l~~~l~--------~~g~~~~~~~Q~~ 142 (453)
.+..+.+....+....++.+++.....+....+ .|. + |++.+.+++. .+|| .|+++|..
T Consensus 23 ~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~------~-----ld~~l~ea~a~vrea~~r~lG~-~pt~VQ~~ 90 (844)
T 1tf5_A 23 EKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGA------T-----TDDLLVEAFAVVREASRRVTGM-FPFKVQLM 90 (844)
T ss_dssp HHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTC------C-----HHHHHHHHHHHHHHHHHHHHSC-CCCHHHHH
T ss_pred HHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCC------C-----hHHHHHHHHHHHHHHHHHHcCC-CCcHHHHH
Confidence 344444555566777888888766655433222 221 1 1222222222 4699 99999999
Q ss_pred HHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeC
Q psy9620 143 GWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYG 222 (453)
Q Consensus 143 ~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g 222 (453)
++|.+++|+ |+.++||+|||++|.+|++.... .++.|+||+||++||.|+++++..++...++++.+++|
T Consensus 91 ~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL--------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~g 160 (844)
T 1tf5_A 91 GGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL--------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLN 160 (844)
T ss_dssp HHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT--------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCT
T ss_pred hhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH--------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeC
Confidence 999999999 99999999999999999985433 24569999999999999999999999888999999998
Q ss_pred CccCCCC-------------------------------------------------------------------------
Q psy9620 223 GASKGPQ------------------------------------------------------------------------- 229 (453)
Q Consensus 223 g~~~~~~------------------------------------------------------------------------- 229 (453)
|.+...+
T Consensus 161 g~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i 240 (844)
T 1tf5_A 161 SMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQA 240 (844)
T ss_dssp TSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHH
T ss_pred CCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHH
Confidence 8542111
Q ss_pred -------C----------CceEE-----------------EEeccCcHH---HHHH--HHHhhc---cceE-----EEec
Q psy9620 230 -------P----------DRQVL-----------------MWSATWPRE---VQKL--AEDFLD---SYIQ-----INIG 262 (453)
Q Consensus 230 -------~----------~~q~v-----------------~~SAT~~~~---~~~~--~~~~~~---~~~~-----~~~~ 262 (453)
+ .+|++ +||||++.. +... +..++. +++. +.++
T Consensus 241 ~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivD 320 (844)
T 1tf5_A 241 NAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVD 320 (844)
T ss_dssp HHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBC
T ss_pred HHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEee
Confidence 1 35565 889997643 3222 222221 1211 0010
Q ss_pred ccc----------------------c-------------------------------------------------ccCcc
Q psy9620 263 SLT----------------------L-------------------------------------------------SANHN 271 (453)
Q Consensus 263 ~~~----------------------~-------------------------------------------------~~~~~ 271 (453)
... . +.+..
T Consensus 321 e~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p 400 (844)
T 1tf5_A 321 SFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRP 400 (844)
T ss_dssp TTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSC
T ss_pred cccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCC
Confidence 000 0 00000
Q ss_pred ce----eEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh
Q psy9620 272 IQ----QVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFR 347 (453)
Q Consensus 272 i~----~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 347 (453)
+. +.+.+....+|...+...+.... ....++||||+|+..++.|+..|...++++..+|+++.+.+|..+.+.|+
T Consensus 401 ~~r~d~~d~v~~~~~~K~~al~~~i~~~~-~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~ 479 (844)
T 1tf5_A 401 VVRDDRPDLIYRTMEGKFKAVAEDVAQRY-MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQ 479 (844)
T ss_dssp CCCEECCCEEESSHHHHHHHHHHHHHHHH-HHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTS
T ss_pred cccccCCcEEEeCHHHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCC
Confidence 00 11233344556666666665432 23568999999999999999999999999999999998888877766666
Q ss_pred cCCCcEEEEeccCccCCCCC--------CCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 348 NGRAGILVATDVAARGLDVD--------DVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 348 ~g~~~vLvaT~~~~~GiDip--------~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
.| .|+||||+++||+||+ ++.+||+|++|.|...|+||+|||||+|.+|.+++|++.+|.
T Consensus 480 ~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 480 KG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred CC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 55 6999999999999999 788999999999999999999999999999999999998763
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-36 Score=324.79 Aligned_cols=269 Identities=19% Similarity=0.241 Sum_probs=205.4
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 130 RQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 130 ~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.++| .|+++|.++++.+++++++++++|||+|||++|+++++..+. .+.++||++||++|+.|+++.+.++
T Consensus 82 ~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--------~g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 82 TYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--------TTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--------cCCeEEEECChHHHHHHHHHHHHHH
Confidence 4467 599999999999999999999999999999999999988764 3568999999999999999999987
Q ss_pred cCCCCceEEEEeCCccCCCC-----------------------------------------------------CCceEEE
Q psy9620 210 GSSTYLRSTCVYGGASKGPQ-----------------------------------------------------PDRQVLM 236 (453)
Q Consensus 210 ~~~~~~~~~~~~gg~~~~~~-----------------------------------------------------~~~q~v~ 236 (453)
+. ++..++|+...... ...|+|+
T Consensus 153 ~~----~vglltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~ 228 (1010)
T 2xgj_A 153 FG----DVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVF 228 (1010)
T ss_dssp HS----CEEEECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEE
T ss_pred hC----CEEEEeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEE
Confidence 64 56666666554332 4689999
Q ss_pred EeccCcHHHHHHHHHh---hccceEEEecccccccCccceeEEEEc---------cccc---------------------
Q psy9620 237 WSATWPREVQKLAEDF---LDSYIQINIGSLTLSANHNIQQVVEVC---------AEHE--------------------- 283 (453)
Q Consensus 237 ~SAT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~--------------------- 283 (453)
+|||++.. .+++.++ ...+..+...... ...+.+.+... ....
T Consensus 229 LSATi~n~-~e~a~~l~~~~~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (1010)
T 2xgj_A 229 LSATIPNA-MEFAEWICKIHSQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDD 304 (1010)
T ss_dssp EECCCTTH-HHHHHHHHHHHTSCEEEEEECCC---SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------
T ss_pred EcCCCCCH-HHHHHHHHhhcCCCeEEEecCCC---cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccc
Confidence 99999764 3344433 3334443332211 11122222110 0000
Q ss_pred --------------h--------hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCC----------------
Q psy9620 284 --------------K--------ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW---------------- 325 (453)
Q Consensus 284 --------------k--------~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~---------------- 325 (453)
+ ...+..++..+......++||||+++..|+.++..|...++
T Consensus 305 ~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~ 384 (1010)
T 2xgj_A 305 PNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNA 384 (1010)
T ss_dssp ------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 0 23344455555444456999999999999999999876433
Q ss_pred -----------------------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cCC-
Q psy9620 326 -----------------------AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FDY- 377 (453)
Q Consensus 326 -----------------------~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~- 377 (453)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.
T Consensus 385 ~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~ 464 (1010)
T 2xgj_A 385 IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 464 (1010)
T ss_dssp HTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSS
T ss_pred HHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCc
Confidence 2889999999999999999999999999999999999999999999999 998
Q ss_pred ---CCChhHHHHhhhcccCCCC--cceEEEEEcCC-ChHHHHHH
Q psy9620 378 ---PNNSEDYIHRIGRTGRSDN--TGTSYTFFTQQ-NSRQAKDL 415 (453)
Q Consensus 378 ---p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~-~~~~~~~l 415 (453)
|.+..+|+||+|||||.|. .|.|++++++. +...++++
T Consensus 465 ~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 465 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp CEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 8899999999999999986 59999999876 44444443
No 29
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.3e-37 Score=337.51 Aligned_cols=267 Identities=21% Similarity=0.279 Sum_probs=213.3
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 130 RQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 130 ~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.+||. | ++|.++|+.+++++|++++||||||||+ |.+|++..+.. .++++|||+||++||.|+++.++++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 46998 9 9999999999999999999999999998 99999887754 3678999999999999999999999
Q ss_pred cCCCCc----eEEEEeCCccCCC-----------C---------------------------------------------
Q psy9620 210 GSSTYL----RSTCVYGGASKGP-----------Q--------------------------------------------- 229 (453)
Q Consensus 210 ~~~~~~----~~~~~~gg~~~~~-----------~--------------------------------------------- 229 (453)
+...++ ++.+++|+.+... +
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~~~~~~~~i~~~lg 202 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLG 202 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHTSTHHHHHHHHHTT
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhhccccHHHHHHHhC
Confidence 988888 8888888765432 1
Q ss_pred -----------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcC
Q psy9620 230 -----------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSK 298 (453)
Q Consensus 230 -----------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 298 (453)
...|++++|||++.. ..++..++.++..+.+.... .....+.+.+. ..++...+..++...
T Consensus 203 f~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L~~ll~~~--- 274 (1054)
T 1gku_B 203 FHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESISTLSSILEKL--- 274 (1054)
T ss_dssp EEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTTHHHHTTS---
T ss_pred cchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHHHHHHHHhhc---
Confidence 135789999999877 54444555444333333222 12233444333 355666666666543
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE----eccCccCCCCCCC-cEEE
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVA----TDVAARGLDVDDV-KFVI 373 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~GiDip~v-~~VI 373 (453)
..++||||+++..|+.+++.|... +.+..+|+++ ..++++|++|+.+|||| |+++++|||+|+| ++||
T Consensus 275 -~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI 347 (1054)
T 1gku_B 275 -GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV 347 (1054)
T ss_dssp -CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEE
T ss_pred -CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEE
Confidence 568999999999999999999988 9999999998 47899999999999999 8999999999996 9999
Q ss_pred EcCCC-----------------------------------------------------------------------CChh
Q psy9620 374 NFDYP-----------------------------------------------------------------------NNSE 382 (453)
Q Consensus 374 ~~d~p-----------------------------------------------------------------------~s~~ 382 (453)
++|+| .+..
T Consensus 348 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 427 (1054)
T 1gku_B 348 FVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLR 427 (1054)
T ss_dssp EESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHH
T ss_pred EeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHH
Confidence 99999 7899
Q ss_pred HHHHhhhcccCCCCcc--eEEEEEcCCChHHHHHHHHHHHh
Q psy9620 383 DYIHRIGRTGRSDNTG--TSYTFFTQQNSRQAKDLIDVLTE 421 (453)
Q Consensus 383 ~y~qr~GRagR~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 421 (453)
+|+||+|||||.|..| .+++|+..++...+..+.+.++.
T Consensus 428 ~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 428 TYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 9999999999987765 48888888898888888888874
No 30
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.9e-37 Score=327.17 Aligned_cols=275 Identities=21% Similarity=0.237 Sum_probs=164.1
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+|+..|+|+|.++++.+++++|+|+++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+.+.+++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999999988876422 236779999999999999999999998
Q ss_pred CCCCceEEEEeCCccCCCC-------------------------------------------------------------
Q psy9620 211 SSTYLRSTCVYGGASKGPQ------------------------------------------------------------- 229 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~~~~~------------------------------------------------------------- 229 (453)
...++++..++|+.....+
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 7778999999988754432
Q ss_pred -----CCceEEEEeccCcH-----------HHHHHHHHhhccceEEEecc---cccccCccceeEEEEc-----------
Q psy9620 230 -----PDRQVLMWSATWPR-----------EVQKLAEDFLDSYIQINIGS---LTLSANHNIQQVVEVC----------- 279 (453)
Q Consensus 230 -----~~~q~v~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~----------- 279 (453)
+..+++++|||+.. .+..+...+....+...... ................
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 23679999999852 22222221111111100000 0000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 280 -------------------------------------------------------------------------------- 279 (453)
Q Consensus 280 -------------------------------------------------------------------------------- 279 (453)
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence
Q ss_pred -------------------------------------------------cccchhhhHHHHHHhh-hcCCCCcEEEEEcc
Q psy9620 280 -------------------------------------------------AEHEKENKLFGLLNDI-SSKDENKTIIFAET 309 (453)
Q Consensus 280 -------------------------------------------------~~~~k~~~l~~ll~~~-~~~~~~~~lVF~~s 309 (453)
....|...|..+|... ......++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 0122334444444432 22446799999999
Q ss_pred hhHHHHHHHHHHhc------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccCccCCCCCCCcEEEEcC
Q psy9620 310 KRKVDKITKSIQNY------------GWAAVGIHGDKSQQERDYVLKEFRN-GRAGILVATDVAARGLDVDDVKFVINFD 376 (453)
Q Consensus 310 ~~~~~~l~~~L~~~------------~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~d 376 (453)
+..++.+++.|... |..+..+|++|++.+|..++++|++ |+++|||||+++++|||+|+|++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999873 5566778999999999999999999 9999999999999999999999999999
Q ss_pred CCCChhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 377 YPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 377 ~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
+|.|+..|+||+|| ||. .+|.|++|+++.+..
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp CCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999999999 999 899999999886543
No 31
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-37 Score=325.71 Aligned_cols=286 Identities=19% Similarity=0.212 Sum_probs=214.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcC------CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 122 DYVLKEVKRQGFDRPTPIQAQGWPIAMSG------SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 122 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
+.+.+.++.++| .||++|.++++.++++ .+++++++||||||++|++|++..+.. +.++||++||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 345555677899 9999999999998865 599999999999999999999988753 4569999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC-------------C---------------------------------
Q psy9620 196 RELAQQIQEVARDFGSSTYLRSTCVYGGASKGP-------------Q--------------------------------- 229 (453)
Q Consensus 196 r~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~-------------~--------------------------------- 229 (453)
++||.|+++.+.+++...++++..++|+..... .
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHH
Confidence 999999999999998888899999888764311 0
Q ss_pred --------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCC
Q psy9620 230 --------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN 301 (453)
Q Consensus 230 --------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~ 301 (453)
...++++||||+.+....+. +..+.....+.... .....+. .......+...+...+.... ....
T Consensus 507 r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p-~~r~~i~---~~~~~~~~~~~l~~~i~~~l-~~g~ 579 (780)
T 1gm5_A 507 REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMP-PGRKEVQ---TMLVPMDRVNEVYEFVRQEV-MRGG 579 (780)
T ss_dssp -CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCC-SSCCCCE---ECCCCSSTHHHHHHHHHHHT-TTSC
T ss_pred HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccC-CCCcceE---EEEeccchHHHHHHHHHHHH-hcCC
Confidence 45899999999866544332 22222111111111 1111222 11222233444555554432 2356
Q ss_pred cEEEEEcch--------hHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCc
Q psy9620 302 KTIIFAETK--------RKVDKITKSIQN---YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVK 370 (453)
Q Consensus 302 ~~lVF~~s~--------~~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~ 370 (453)
+++|||++. ..++.+++.|.. .++.+..+||+|++.+|+.++++|++|+++|||||+++++|||+|+++
T Consensus 580 qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~ 659 (780)
T 1gm5_A 580 QAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRAN 659 (780)
T ss_dssp CBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCC
T ss_pred cEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCC
Confidence 899999965 457888888887 467899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC-ChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCC
Q psy9620 371 FVINFDYPN-NSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNH 424 (453)
Q Consensus 371 ~VI~~d~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (453)
+||++|.|. +.+.|+||+||+||.|.+|.|++++++.+ ....+.++.+++...
T Consensus 660 ~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~-~~~~~rl~~l~~~~d 713 (780)
T 1gm5_A 660 VMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVG-EEAMERLRFFTLNTD 713 (780)
T ss_dssp EEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCC-HHHHHHHHHHHTCCC
T ss_pred EEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCC-hHHHHHHHHHHhhhc
Confidence 999999996 78999999999999999999999988443 334444555655443
No 32
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.4e-37 Score=320.92 Aligned_cols=276 Identities=16% Similarity=0.136 Sum_probs=199.3
Q ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH
Q psy9620 118 ANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 118 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~ 197 (453)
+++++.+.+.+... ...++|+|+.+++.+++++|+|++||||||||++|++|++..+.. .++++|||+||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 34555555544433 478999999899999999999999999999999999999988765 3567999999999
Q ss_pred HHHHHHHHHHHhcCCC-----------CceEEEEeCCcc---------CCC-C---------------------------
Q psy9620 198 LAQQIQEVARDFGSST-----------YLRSTCVYGGAS---------KGP-Q--------------------------- 229 (453)
Q Consensus 198 La~q~~~~~~~~~~~~-----------~~~~~~~~gg~~---------~~~-~--------------------------- 229 (453)
||.|+.+.+..+.-.. +-.+..+..+.. ... .
T Consensus 227 La~Qi~~~l~~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~ 306 (618)
T 2whx_A 227 VAAEMEEALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEM 306 (618)
T ss_dssp HHHHHHHHTTTSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcc
Confidence 9999998875321000 000000000000 000 0
Q ss_pred CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcc
Q psy9620 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAET 309 (453)
Q Consensus 230 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s 309 (453)
.++|+++||||++..+..++. .++..+.+... .+. .+...++..+.. ...++||||++
T Consensus 307 ~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~--------------~~~-~~~~~ll~~l~~----~~~~~LVF~~s 364 (618)
T 2whx_A 307 GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE--------------IPE-RSWNTGFDWITD----YQGKTVWFVPS 364 (618)
T ss_dssp TSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC--------------CCS-SCCSSSCHHHHH----CCSCEEEECSS
T ss_pred cCccEEEEECCCchhhhhhhc---cCCceeeeccc--------------CCH-HHHHHHHHHHHh----CCCCEEEEECC
Confidence 578999999999876432211 12222222110 000 111222233322 35699999999
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEE-----------------
Q psy9620 310 KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFV----------------- 372 (453)
Q Consensus 310 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~V----------------- 372 (453)
++.|+.+++.|...++.+..+|+. +|..+++.|++|+.+|||||+++++|||+| +++|
T Consensus 365 ~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~ 439 (618)
T 2whx_A 365 IKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPE 439 (618)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSC
T ss_pred hhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCC
Confidence 999999999999999999999984 788899999999999999999999999997 9888
Q ss_pred ---EEcCCCCChhHHHHhhhcccCCCC-cceEEEEEc---CCChHHHHHHHHHHHhcCCCCCh
Q psy9620 373 ---INFDYPNNSEDYIHRIGRTGRSDN-TGTSYTFFT---QQNSRQAKDLIDVLTESNHPVDP 428 (453)
Q Consensus 373 ---I~~d~p~s~~~y~qr~GRagR~g~-~g~~~~~~~---~~~~~~~~~l~~~l~~~~~~v~~ 428 (453)
|+||.|.+.++|+||+||+||.|. +|.|++|++ +.+...++.+...+...+.++++
T Consensus 440 ~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 440 RVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred ceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 788889999999999999999964 899999998 77777778777777766666654
No 33
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.6e-36 Score=341.72 Aligned_cols=282 Identities=18% Similarity=0.247 Sum_probs=215.6
Q ss_pred CCCCCCHHHHHHHHHHh-cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCC---CCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 132 GFDRPTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQL---KPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~---~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
||++|+++|++++|.++ +++|+|++||||||||++|++|++..+...... ....+.++||++|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 79999999999999887 588999999999999999999999998764322 22357789999999999999999999
Q ss_pred HhcCCCCceEEEEeCCccCCCC----------------------------------------------------------
Q psy9620 208 DFGSSTYLRSTCVYGGASKGPQ---------------------------------------------------------- 229 (453)
Q Consensus 208 ~~~~~~~~~~~~~~gg~~~~~~---------------------------------------------------------- 229 (453)
+.....++++..++|+......
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~ 235 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAI 235 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHH
Confidence 9888899999999998765432
Q ss_pred -------CCceEEEEeccCcHHHHHHHHHhhccce--EEEecccccccCccceeEEEEccccchh---hhHHHHHHh-hh
Q psy9620 230 -------PDRQVLMWSATWPREVQKLAEDFLDSYI--QINIGSLTLSANHNIQQVVEVCAEHEKE---NKLFGLLND-IS 296 (453)
Q Consensus 230 -------~~~q~v~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~k~---~~l~~ll~~-~~ 296 (453)
.+.|+|++|||+| +..++++++..++. ...+... ..+..+.+.+......... ..+..++.. +.
T Consensus 236 ~~~~~~~~~~riI~LSATl~-N~~dvA~wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 312 (1724)
T 4f92_B 236 RNIEMTQEDVRLIGLSATLP-NYEDVATFLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIM 312 (1724)
T ss_dssp HHHHHHTCCCEEEEEECSCT-THHHHHHHTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCcEEEEecccC-CHHHHHHHhCCCCCCCeEEECCC--CccCccEEEEeccCCcchhhhhHHHHHHHHHHHH
Confidence 4679999999996 46677776644321 1111111 1122233333222222111 111122211 11
Q ss_pred -cCCCCcEEEEEcchhHHHHHHHHHHhc-------------------------------------CCeEEEEcCCCCHHH
Q psy9620 297 -SKDENKTIIFAETKRKVDKITKSIQNY-------------------------------------GWAAVGIHGDKSQQE 338 (453)
Q Consensus 297 -~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~~~~~ 338 (453)
....+++||||+|++.|+.+++.|.+. ...+.+||++|++.+
T Consensus 313 ~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~ 392 (1724)
T 4f92_B 313 EHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVD 392 (1724)
T ss_dssp TCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHH
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHH
Confidence 123568999999999999999888641 234889999999999
Q ss_pred HHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE----cC------CCCChhHHHHhhhcccCCCC--cceEEEEEcC
Q psy9620 339 RDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN----FD------YPNNSEDYIHRIGRTGRSDN--TGTSYTFFTQ 406 (453)
Q Consensus 339 r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d------~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~ 406 (453)
|..+++.|++|.++|||||+++++|||+|++++||. || .|.+..+|+||+|||||.|. .|.++++.++
T Consensus 393 R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~ 472 (1724)
T 4f92_B 393 RTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSH 472 (1724)
T ss_dssp HHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEES
T ss_pred HHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecc
Confidence 999999999999999999999999999999999995 44 35689999999999999864 6999999998
Q ss_pred CChHHHHHHH
Q psy9620 407 QNSRQAKDLI 416 (453)
Q Consensus 407 ~~~~~~~~l~ 416 (453)
.+...+..++
T Consensus 473 ~~~~~~~~ll 482 (1724)
T 4f92_B 473 GELQYYLSLL 482 (1724)
T ss_dssp TTCCHHHHHT
T ss_pred hhHHHHHHHH
Confidence 8877766654
No 34
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.3e-35 Score=323.65 Aligned_cols=263 Identities=24% Similarity=0.318 Sum_probs=207.9
Q ss_pred HCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 130 RQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 130 ~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..|| +|+|+|.++++.+++++|++++||||||||++|+++++..+. .++++|||+||++||.|+++.++++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~--------~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh--------cCCeEEEEechHHHHHHHHHHHHHh
Confidence 3588 799999999999999999999999999999988888877662 4678999999999999999999998
Q ss_pred cCCCCceEEEEeCCccCC-------------CC-----------------------------------------------
Q psy9620 210 GSSTYLRSTCVYGGASKG-------------PQ----------------------------------------------- 229 (453)
Q Consensus 210 ~~~~~~~~~~~~gg~~~~-------------~~----------------------------------------------- 229 (453)
+ ..++++..++|+.+.. .+
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred h-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 7 7788999999887651 11
Q ss_pred -------------------------CCceEEEEecc-CcHHHHH-HHHHhhccceEEEecccccccCccceeEEEEcccc
Q psy9620 230 -------------------------PDRQVLMWSAT-WPREVQK-LAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH 282 (453)
Q Consensus 230 -------------------------~~~q~v~~SAT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 282 (453)
...|+++|||| .|..+.. +...++. +.+.... ....++.+.+..+
T Consensus 224 f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~--- 295 (1104)
T 4ddu_A 224 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS--- 295 (1104)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC---
T ss_pred CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec---
Confidence 12589999999 5655442 2233322 2222221 2234455555433
Q ss_pred chhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEE-EEcCCCCHHHHHHHHHHHhcCCCcEEEE----e
Q psy9620 283 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAV-GIHGDKSQQERDYVLKEFRNGRAGILVA----T 357 (453)
Q Consensus 283 ~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~~h~~~~~~~r~~~~~~f~~g~~~vLva----T 357 (453)
++...|..++... ..++||||+++..|+.++..|...++.+. .+|| +|.+ +++|++|+.+|||| |
T Consensus 296 ~k~~~L~~ll~~~----~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~T 365 (1104)
T 4ddu_A 296 RSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYY 365 (1104)
T ss_dssp CCHHHHHHHHHHH----CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTH
T ss_pred CHHHHHHHHHHhc----CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCC
Confidence 4666777777663 47999999999999999999999999998 9999 2555 99999999999999 9
Q ss_pred ccCccCCCCCC-CcEEEEcCCCC---------------------------------------------------------
Q psy9620 358 DVAARGLDVDD-VKFVINFDYPN--------------------------------------------------------- 379 (453)
Q Consensus 358 ~~~~~GiDip~-v~~VI~~d~p~--------------------------------------------------------- 379 (453)
+++++|||+|+ |++|||||+|.
T Consensus 366 dvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~ 445 (1104)
T 4ddu_A 366 GKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMF 445 (1104)
T ss_dssp HHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_pred CeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhcc
Confidence 99999999999 99999999998
Q ss_pred ---------------ChhHHHHhhhcccCCCCcc--eEEEEEcCCChHHHHHHHHHHH
Q psy9620 380 ---------------NSEDYIHRIGRTGRSDNTG--TSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 380 ---------------s~~~y~qr~GRagR~g~~g--~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
+..+|+||+|||||.+..| .+++++..+|...++.|.+.++
T Consensus 446 ~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 446 RGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp CSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred ceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7789999999999975432 3444444577888888887776
No 35
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.3e-35 Score=319.25 Aligned_cols=273 Identities=20% Similarity=0.228 Sum_probs=163.7
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.++..|+++|.++++.+++++|+|+++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+.+.+++++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~---~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 36779999999999999999999999999999999999999887765321 236679999999999999999999998
Q ss_pred CCCCceEEEEeCCccCCCC-------------------------------------------------------------
Q psy9620 211 SSTYLRSTCVYGGASKGPQ------------------------------------------------------------- 229 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~~~~~------------------------------------------------------------- 229 (453)
...++++..++|+.....+
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8778999999998754432
Q ss_pred -----CCceEEEEeccCcH-----------HHHHHHHHhh------------------ccceEEEecccccccCcc----
Q psy9620 230 -----PDRQVLMWSATWPR-----------EVQKLAEDFL------------------DSYIQINIGSLTLSANHN---- 271 (453)
Q Consensus 230 -----~~~q~v~~SAT~~~-----------~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~---- 271 (453)
+..+++++|||+.. .+..+...+. ..+......... .....
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~-~~~~~~~~~ 479 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-RIHNPFAAI 479 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCC-CSCCHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEeccc-ccCcHHHHH
Confidence 22689999999842 2222221111 111100000000 00000
Q ss_pred ----------c-e---------eEEE----------E-------------------------------------------
Q psy9620 272 ----------I-Q---------QVVE----------V------------------------------------------- 278 (453)
Q Consensus 272 ----------i-~---------~~~~----------~------------------------------------------- 278 (453)
+ . +... .
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0 0000 0
Q ss_pred -------------------------------------------------ccccchhhhHHHHHHhhh-cCCCCcEEEEEc
Q psy9620 279 -------------------------------------------------CAEHEKENKLFGLLNDIS-SKDENKTIIFAE 308 (453)
Q Consensus 279 -------------------------------------------------~~~~~k~~~l~~ll~~~~-~~~~~~~lVF~~ 308 (453)
.....|...|..+|.... .....++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 001223344444554432 234579999999
Q ss_pred chhHHHHHHHHHHhc------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 309 TKRKVDKITKSIQNY------------GWAAVGIHGDKSQQERDYVLKEFRN-GRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 309 s~~~~~~l~~~L~~~------------~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
++..++.|++.|... |..+..+|++|++.+|..++++|++ |+++|||||+++++|||+|+|++||+|
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEe
Confidence 999999999999986 5556677999999999999999999 999999999999999999999999999
Q ss_pred CCCCChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
|+|.|+..|+||+|| ||. .+|.+++|++..+.
T Consensus 720 D~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp SCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999 999 78999999987654
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.1e-34 Score=316.05 Aligned_cols=272 Identities=19% Similarity=0.171 Sum_probs=213.9
Q ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhc----CC--cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 119 NFPDYVLKEVK-RQGFDRPTPIQAQGWPIAMS----GS--NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 119 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~----g~--d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
++++.+.+.+. .++| ++||+|.++++.+++ ++ |+|++++||+|||++|+++++..+. .++++||
T Consensus 587 ~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vlv 657 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVAV 657 (1151)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEEE
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEEE
Confidence 45566666664 4577 579999999999886 66 9999999999999999999887654 3568999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCC-------------CC-----------------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKG-------------PQ----------------------------- 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~-------------~~----------------------------- 229 (453)
++||++||.|+++.+.++....++++..+.+..... ..
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~ 737 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRF 737 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGS
T ss_pred EechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhc
Confidence 999999999999999988877778877776543211 00
Q ss_pred ------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhc
Q psy9620 230 ------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISS 297 (453)
Q Consensus 230 ------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 297 (453)
...++++||||+++....+....+.+...+.... .....+...+.. ..+......++..+.
T Consensus 738 g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~---~~r~~i~~~~~~---~~~~~i~~~il~~l~- 810 (1151)
T 2eyq_A 738 GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP---ARRLAVKTFVRE---YDSMVVREAILREIL- 810 (1151)
T ss_dssp CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC---CBCBCEEEEEEE---CCHHHHHHHHHHHHT-
T ss_pred ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC---CCccccEEEEec---CCHHHHHHHHHHHHh-
Confidence 5689999999988777666655555443322111 111223333322 222233334444442
Q ss_pred CCCCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 298 KDENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 298 ~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
..++++|||+++..++.+++.|... ++.+..+||+|++.+|+.++++|++|+.+|||||+++++|||+|++++||++
T Consensus 811 -~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~ 889 (1151)
T 2eyq_A 811 -RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 889 (1151)
T ss_dssp -TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEET
T ss_pred -cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEe
Confidence 3679999999999999999999987 7899999999999999999999999999999999999999999999999999
Q ss_pred CC-CCChhHHHHhhhcccCCCCcceEEEEEcCC
Q psy9620 376 DY-PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ 407 (453)
Q Consensus 376 d~-p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 407 (453)
+. +.++.+|+||+||+||.|..|.|++++.+.
T Consensus 890 ~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 890 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 98 568999999999999999999999998764
No 37
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.7e-36 Score=301.25 Aligned_cols=264 Identities=17% Similarity=0.132 Sum_probs=187.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCcE-EEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNM-VGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~-li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
|+.+|+|+|+ ++|.+++++++ ++++|||||||++|++|++..+.. .++++||++||++||.|+.+.+..+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g~~ 72 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALRGLP 72 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhcCce
Confidence 6789999985 79999998887 889999999999999999987654 35679999999999999999885431
Q ss_pred CC---C--------CceEEEEeCCcc---------CCC-C---------------------------CCceEEEEeccCc
Q psy9620 211 SS---T--------YLRSTCVYGGAS---------KGP-Q---------------------------PDRQVLMWSATWP 242 (453)
Q Consensus 211 ~~---~--------~~~~~~~~gg~~---------~~~-~---------------------------~~~q~v~~SAT~~ 242 (453)
.. . +..+..+..+.- ... . ++.|+++||||++
T Consensus 73 v~~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 152 (451)
T 2jlq_A 73 IRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPP 152 (451)
T ss_dssp EEECCTTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCT
T ss_pred eeeeeccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhhcCCCceEEEEccCCC
Confidence 00 0 001111111100 000 0 4789999999998
Q ss_pred HHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHh
Q psy9620 243 REVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN 322 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~ 322 (453)
..+.. .+..++..+.+... .+. .....+...+.. ..+++||||++++.|+.+++.|..
T Consensus 153 ~~~~~---~~~~~~~~~~~~~~---~p~------------~~~~~~~~~l~~----~~~~~lVF~~s~~~a~~l~~~L~~ 210 (451)
T 2jlq_A 153 GSTDP---FPQSNSPIEDIERE---IPE------------RSWNTGFDWITD----YQGKTVWFVPSIKAGNDIANCLRK 210 (451)
T ss_dssp TCCCS---SCCCSSCEEEEECC---CCS------------SCCSSSCHHHHH----CCSCEEEECSSHHHHHHHHHHHHT
T ss_pred ccchh---hhcCCCceEecCcc---CCc------------hhhHHHHHHHHh----CCCCEEEEcCCHHHHHHHHHHHHH
Confidence 74432 12223222222110 000 000111222322 256999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcC--------------------CCCChh
Q psy9620 323 YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFD--------------------YPNNSE 382 (453)
Q Consensus 323 ~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d--------------------~p~s~~ 382 (453)
.++.+..+|+++. ..+++.|++|+.+|||||+++++|||+|+ ++||+|| .|.+.+
T Consensus 211 ~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~ 285 (451)
T 2jlq_A 211 SGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPA 285 (451)
T ss_dssp TTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHH
T ss_pred cCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHH
Confidence 9999999999754 57899999999999999999999999999 9999999 999999
Q ss_pred HHHHhhhcccCCCC-cceEEEEEcCCC---hHHHHHHHHHHHhcCCCCChHH
Q psy9620 383 DYIHRIGRTGRSDN-TGTSYTFFTQQN---SRQAKDLIDVLTESNHPVDPKL 430 (453)
Q Consensus 383 ~y~qr~GRagR~g~-~g~~~~~~~~~~---~~~~~~l~~~l~~~~~~v~~~l 430 (453)
+|+||+||+||.|. +|.|++|+...+ ..........+...+.++|+.+
T Consensus 286 ~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 286 SAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp HHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred HHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 99999999999998 889988875432 1111222233444555666544
No 38
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.7e-36 Score=314.72 Aligned_cols=258 Identities=18% Similarity=0.222 Sum_probs=186.8
Q ss_pred HHHCCCC-----CCCHHHH-----HHHHHHh------cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEE
Q psy9620 128 VKRQGFD-----RPTPIQA-----QGWPIAM------SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLV 191 (453)
Q Consensus 128 l~~~g~~-----~~~~~Q~-----~~i~~i~------~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 191 (453)
+..+||. .|+++|+ ++||.++ +++|+|++||||||||++|++|++..+.. .++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEE
Confidence 3344666 8999999 9999888 89999999999999999999999988664 3567999
Q ss_pred EcCCHHHHHHHHHHHHHhcCCCCce-----------EEEEeCCcc---------CCC-C---------------------
Q psy9620 192 LAPTRELAQQIQEVARDFGSSTYLR-----------STCVYGGAS---------KGP-Q--------------------- 229 (453)
Q Consensus 192 l~Ptr~La~q~~~~~~~~~~~~~~~-----------~~~~~gg~~---------~~~-~--------------------- 229 (453)
|+||++||.|+++.+..+.-..... ...+..+.- ... .
T Consensus 276 laPTr~La~Q~~~~l~~~~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l 355 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGLPVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYI 355 (673)
T ss_dssp EESSHHHHHHHHHHTTTSCCEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHH
T ss_pred EccHHHHHHHHHHHHhcCCeeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHH
Confidence 9999999999999887652111000 000000000 000 0
Q ss_pred ------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcE
Q psy9620 230 ------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKT 303 (453)
Q Consensus 230 ------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~ 303 (453)
...|+++||||++..+..+... + ..+.......... ....++..+. . ...++
T Consensus 356 ~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~--------------~~i~~v~~~~~~~-~~~~~l~~l~---~-~~~~~ 413 (673)
T 2wv9_A 356 ATRVEAGEAAAIFMTATPPGTSDPFPDT---N--------------SPVHDVSSEIPDR-AWSSGFEWIT---D-YAGKT 413 (673)
T ss_dssp HHHHHTTSCEEEEECSSCTTCCCSSCCC---S--------------SCEEEEECCCCSS-CCSSCCHHHH---S-CCSCE
T ss_pred HHhccccCCcEEEEcCCCChhhhhhccc---C--------------CceEEEeeecCHH-HHHHHHHHHH---h-CCCCE
Confidence 4689999999998653321110 0 0111110001111 1112222222 2 46799
Q ss_pred EEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE---------
Q psy9620 304 IIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN--------- 374 (453)
Q Consensus 304 lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------- 374 (453)
||||++++.++.+++.|...++.+..+|+. +|+.+++.|++|+.+|||||+++++|||+| +++||+
T Consensus 414 lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~v 488 (673)
T 2wv9_A 414 VWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTI 488 (673)
T ss_dssp EEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEE
T ss_pred EEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCccccee
Confidence 999999999999999999999999999993 899999999999999999999999999999 999998
Q ss_pred -----------cCCCCChhHHHHhhhcccCC-CCcceEEEEE---cCCChHHHHHHHHHH
Q psy9620 375 -----------FDYPNNSEDYIHRIGRTGRS-DNTGTSYTFF---TQQNSRQAKDLIDVL 419 (453)
Q Consensus 375 -----------~d~p~s~~~y~qr~GRagR~-g~~g~~~~~~---~~~~~~~~~~l~~~l 419 (453)
||+|.+.++|+||+||+||. ++.|.|++|+ ++.+...++.+...+
T Consensus 489 i~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 489 LDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp ECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 67899999999999999999 7899999996 566665555555444
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.4e-34 Score=313.08 Aligned_cols=258 Identities=16% Similarity=0.192 Sum_probs=192.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 132 GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
+| .|+++|.++|+.+++++|+++++|||||||++|+++++..+. .++++||++||++|+.|+++.+.+++.
T Consensus 37 ~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~--------~g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR--------NMTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp SS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH--------TTCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 56 689999999999999999999999999999999999887653 366899999999999999999998753
Q ss_pred CCCceEEEEeCCccCCCC-----------------------------------------------------CCceEEEEe
Q psy9620 212 STYLRSTCVYGGASKGPQ-----------------------------------------------------PDRQVLMWS 238 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~~-----------------------------------------------------~~~q~v~~S 238 (453)
++++..++|+.....+ ...|+|++|
T Consensus 108 --~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLS 185 (997)
T 4a4z_A 108 --DVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLS 185 (997)
T ss_dssp ---CCEEEECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEE
T ss_pred --CCeEEEEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEc
Confidence 5677888887654433 568999999
Q ss_pred ccCcHHHHHHHHHhhc---cceEEEecccccccCccceeEEEE-------cc----------------------------
Q psy9620 239 ATWPREVQKLAEDFLD---SYIQINIGSLTLSANHNIQQVVEV-------CA---------------------------- 280 (453)
Q Consensus 239 AT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~-------~~---------------------------- 280 (453)
||++... +++.++.. ..+.+...... ...+.+.+.. ..
T Consensus 186 AT~~n~~-ef~~~l~~~~~~~~~vi~~~~r---~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (997)
T 4a4z_A 186 ATVPNTY-EFANWIGRTKQKNIYVISTPKR---PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSK 261 (997)
T ss_dssp CCCTTHH-HHHHHHHHHHTCCEEEEECSSC---SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------
T ss_pred CCCCChH-HHHHHHhcccCCceEEEecCCC---CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccc
Confidence 9987543 45555432 22221111100 0111111100 00
Q ss_pred -------------------------------------------------------ccchhhhHHHHHHhhhcCCCCcEEE
Q psy9620 281 -------------------------------------------------------EHEKENKLFGLLNDISSKDENKTII 305 (453)
Q Consensus 281 -------------------------------------------------------~~~k~~~l~~ll~~~~~~~~~~~lV 305 (453)
.......+..++..+......++||
T Consensus 262 ~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IV 341 (997)
T 4a4z_A 262 TDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVV 341 (997)
T ss_dssp -------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEE
Confidence 0001122334444444455679999
Q ss_pred EEcchhHHHHHHHHHHhcCC---------------------------------------eEEEEcCCCCHHHHHHHHHHH
Q psy9620 306 FAETKRKVDKITKSIQNYGW---------------------------------------AAVGIHGDKSQQERDYVLKEF 346 (453)
Q Consensus 306 F~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~~h~~~~~~~r~~~~~~f 346 (453)
||++++.|+.++..|...++ .+..+|++|++.+|..+++.|
T Consensus 342 F~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F 421 (997)
T 4a4z_A 342 FVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILF 421 (997)
T ss_dssp ECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHH
Confidence 99999999999999976554 579999999999999999999
Q ss_pred hcCCCcEEEEeccCccCCCCCCCcEEEEcCCCC---------ChhHHHHhhhcccCCC--CcceEEEEEc
Q psy9620 347 RNGRAGILVATDVAARGLDVDDVKFVINFDYPN---------NSEDYIHRIGRTGRSD--NTGTSYTFFT 405 (453)
Q Consensus 347 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~---------s~~~y~qr~GRagR~g--~~g~~~~~~~ 405 (453)
++|.++|||||+++++|||+|+ ..||+++.|. |..+|+||+|||||.| ..|.|++++.
T Consensus 422 ~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 422 SKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 9999999999999999999999 5555555544 9999999999999998 5677888873
No 40
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3.7e-36 Score=299.89 Aligned_cols=249 Identities=19% Similarity=0.230 Sum_probs=175.6
Q ss_pred HHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCce---------
Q psy9620 146 IAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLR--------- 216 (453)
Q Consensus 146 ~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~--------- 216 (453)
.+++++|+|++||||||||++|++|++..+.. .++++||++||++||.|+++.+..+.-.....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~~v~~~~~~~~~v~Tp~ 76 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHGSGR 76 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTSCEEEESSCCCCCCCSS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcCCeEEecccceeccCCc
Confidence 46789999999999999999999999987764 35679999999999999999887552100000
Q ss_pred --EEEEe----------------------CCccCCC---------------CCCceEEEEeccCcHHHHHHHHHhhccce
Q psy9620 217 --STCVY----------------------GGASKGP---------------QPDRQVLMWSATWPREVQKLAEDFLDSYI 257 (453)
Q Consensus 217 --~~~~~----------------------gg~~~~~---------------~~~~q~v~~SAT~~~~~~~~~~~~~~~~~ 257 (453)
...+. .....-. ..+.|+++||||+++.+..++.. ..++
T Consensus 77 ~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~--~~~~ 154 (440)
T 1yks_A 77 EVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGTSDEFPHS--NGEI 154 (440)
T ss_dssp CCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE
T ss_pred cceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhhc--CCCe
Confidence 00000 0000000 04689999999998754322211 0011
Q ss_pred EEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHH
Q psy9620 258 QINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQ 337 (453)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 337 (453)
......+..... ..+...+.. ...++||||++++.|+.+++.|...++.+..+|| .
T Consensus 155 ---------------~~~~~~~~~~~~-~~~~~~l~~----~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~ 210 (440)
T 1yks_A 155 ---------------EDVQTDIPSEPW-NTGHDWILA----DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----K 210 (440)
T ss_dssp ---------------EEEECCCCSSCC-SSSCHHHHH----CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----S
T ss_pred ---------------eEeeeccChHHH-HHHHHHHHh----cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----h
Confidence 000011111111 122222222 2579999999999999999999999999999999 4
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE-------------------cCCCCChhHHHHhhhcccCC-CCc
Q psy9620 338 ERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN-------------------FDYPNNSEDYIHRIGRTGRS-DNT 397 (453)
Q Consensus 338 ~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~-------------------~d~p~s~~~y~qr~GRagR~-g~~ 397 (453)
+|..+++.|++|+.+|||||+++++|||+| +++||+ ++.|.+.++|+||+||+||. +.+
T Consensus 211 ~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 289 (440)
T 1yks_A 211 TFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD 289 (440)
T ss_dssp SCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred hHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCC
Confidence 688999999999999999999999999999 999986 89999999999999999998 689
Q ss_pred ceEEEEE---cCCChHHHHHHHHHHHhcCCCCCh
Q psy9620 398 GTSYTFF---TQQNSRQAKDLIDVLTESNHPVDP 428 (453)
Q Consensus 398 g~~~~~~---~~~~~~~~~~l~~~l~~~~~~v~~ 428 (453)
|.|++|+ ++.+...++.+...+.....+++.
T Consensus 290 g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 290 GDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp CEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGG
T ss_pred ceEEEEeccCChhhhhhhhhhhHHhccccccccc
Confidence 9999996 677777788777777666666654
No 41
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=313.45 Aligned_cols=119 Identities=25% Similarity=0.463 Sum_probs=96.0
Q ss_pred hhhHHHHHHhh-hcCC-CCcEEEEEcchhHHHHHHHHHHhc------CCeEEEEcCC--------CCHHHHHHHHHHHhc
Q psy9620 285 ENKLFGLLNDI-SSKD-ENKTIIFAETKRKVDKITKSIQNY------GWAAVGIHGD--------KSQQERDYVLKEFRN 348 (453)
Q Consensus 285 ~~~l~~ll~~~-~~~~-~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~~h~~--------~~~~~r~~~~~~f~~ 348 (453)
...|..+|... .... ..++||||+++..++.+++.|... ++.+..+||+ |++.+|..++++|++
T Consensus 383 ~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~ 462 (699)
T 4gl2_A 383 LTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT 462 (699)
T ss_dssp SSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhc
Confidence 33444444442 2223 679999999999999999999987 8999999999 999999999999999
Q ss_pred CCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 349 GRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 349 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
|+.+|||||+++++|||+|+|++||+||+|.|+..|+||+|||||.| .+++++..
T Consensus 463 g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 463 GKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp ---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred CCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 99999999999999999999999999999999999999999976653 45555544
No 42
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-34 Score=292.13 Aligned_cols=267 Identities=25% Similarity=0.303 Sum_probs=200.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY 214 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~ 214 (453)
.|+|+|.++++.++++ ++++.+|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+++.++.....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 7999999999999998 99999999999999999999887652 355799999999999999999999975444
Q ss_pred ceEEEEeCCccCCC--------C---------------------------------------------------CCceEE
Q psy9620 215 LRSTCVYGGASKGP--------Q---------------------------------------------------PDRQVL 235 (453)
Q Consensus 215 ~~~~~~~gg~~~~~--------~---------------------------------------------------~~~q~v 235 (453)
.++..++|+..... . ...+++
T Consensus 81 ~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp GGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred hheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 57777777653211 0 467899
Q ss_pred EEeccCcHH---HHHHHHHhhccceEEEecccc-c---ccCccceeEEEE------------------------------
Q psy9620 236 MWSATWPRE---VQKLAEDFLDSYIQINIGSLT-L---SANHNIQQVVEV------------------------------ 278 (453)
Q Consensus 236 ~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~-~---~~~~~i~~~~~~------------------------------ 278 (453)
++|||+..+ +..+...+............. . ............
T Consensus 161 ~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 240 (494)
T ss_dssp EEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred EEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999733 333433332221111100000 0 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy9620 279 -------------------------------------------------------------------------------- 278 (453)
Q Consensus 279 -------------------------------------------------------------------------------- 278 (453)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (494)
T 1wp9_A 241 SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIF 320 (494)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhh
Confidence
Q ss_pred ------------------ccccchhhhHHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcC-------
Q psy9620 279 ------------------CAEHEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG------- 332 (453)
Q Consensus 279 ------------------~~~~~k~~~l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~------- 332 (453)
.....|...+.+++..... ....++||||+++..++.+++.|...++.+..+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~ 400 (494)
T 1wp9_A 321 SDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND 400 (494)
T ss_dssp TSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC---
T ss_pred hhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccccc
Confidence 0122344445555554321 35679999999999999999999999999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChH
Q psy9620 333 -DKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSR 410 (453)
Q Consensus 333 -~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~ 410 (453)
+|+..+|..++++|++|+.+|||||+++++|||+|++++||+||+|.++..|+||+||+||.|+ |.++.|+++.+.+
T Consensus 401 ~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 401 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp ----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred ccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 9999999987643
No 43
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1e-34 Score=306.72 Aligned_cols=287 Identities=16% Similarity=0.262 Sum_probs=209.0
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAM-SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 109 p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
+.++.+|+++++++.+.+.+++.+ ..|+++|+++|+.++ .+++++++||||||||+ ++|++....... .+.++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~---~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP---HLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG---GGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc---cCCCc
Confidence 346678999999999999999887 689999999999877 56789999999999998 566663222111 11366
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhc-CCCCceEE----------------EEeCCccC--------CCC-------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFG-SSTYLRST----------------CVYGGASK--------GPQ------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~-~~~~~~~~----------------~~~gg~~~--------~~~------------- 229 (453)
+++|++|+++|+.|+.+.+.... ...+..+. .++.|.-. -..
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ 221 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERT 221 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCC
T ss_pred eEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccc
Confidence 79999999999999988765532 12211111 11111000 000
Q ss_pred -----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHH
Q psy9620 230 -----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLL 292 (453)
Q Consensus 230 -----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 292 (453)
++.|+++||||++.+ .+. .++.+...+.+.... ..+...+......+.....+..+
T Consensus 222 ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~--~l~-~~~~~~~vi~v~gr~----~pv~~~~~~~~~~~~~~~~l~~l 294 (773)
T 2xau_A 222 LATDILMGLLKQVVKRRPDLKIIIMSATLDAE--KFQ-RYFNDAPLLAVPGRT----YPVELYYTPEFQRDYLDSAIRTV 294 (773)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH--HHH-HHTTSCCEEECCCCC----CCEEEECCSSCCSCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhCCCceEEEEeccccHH--HHH-HHhcCCCcccccCcc----cceEEEEecCCchhHHHHHHHHH
Confidence 578999999999643 343 444544444433221 22333322222223333333333
Q ss_pred Hhh-hcCCCCcEEEEEcchhHHHHHHHHHHh-----------cCCeEEEEcCCCCHHHHHHHHHHHh-----cCCCcEEE
Q psy9620 293 NDI-SSKDENKTIIFAETKRKVDKITKSIQN-----------YGWAAVGIHGDKSQQERDYVLKEFR-----NGRAGILV 355 (453)
Q Consensus 293 ~~~-~~~~~~~~lVF~~s~~~~~~l~~~L~~-----------~~~~~~~~h~~~~~~~r~~~~~~f~-----~g~~~vLv 355 (453)
..+ .....+++||||+++.+++.+++.|.. .++.+..+||+|++.+|..+++.|+ +|..+|||
T Consensus 295 ~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlV 374 (773)
T 2xau_A 295 LQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVI 374 (773)
T ss_dssp HHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEE
T ss_pred HHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEE
Confidence 222 233577999999999999999999985 5788999999999999999999999 99999999
Q ss_pred EeccCccCCCCCCCcEEEEcCC------------------CCChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 356 ATDVAARGLDVDDVKFVINFDY------------------PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 356 aT~~~~~GiDip~v~~VI~~d~------------------p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
||+++++|||||+|++||++++ |.|.++|+||+|||||. .+|.|+.|+++.+.
T Consensus 375 AT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 375 STNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp ECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred eCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999999999999888 88999999999999999 89999999986543
No 44
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=7e-35 Score=299.85 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=112.4
Q ss_pred EccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe
Q psy9620 278 VCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVAT 357 (453)
Q Consensus 278 ~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT 357 (453)
+....+|...+...+.... ....++||||+|+..++.|+..|...++++..+|+++.+.++..+.+.|+.| .|+|||
T Consensus 420 ~~~~~~K~~al~~~i~~~~-~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIAT 496 (853)
T 2fsf_A 420 YMTEAEKIQAIIEDIKERT-AKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIAT 496 (853)
T ss_dssp ESSHHHHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEE
T ss_pred EeCHHHHHHHHHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEec
Confidence 3444556666666665432 2356899999999999999999999999999999999888888888889888 699999
Q ss_pred ccCccCCCCCCC-------------------------------------cEEEEcCCCCChhHHHHhhhcccCCCCcceE
Q psy9620 358 DVAARGLDVDDV-------------------------------------KFVINFDYPNNSEDYIHRIGRTGRSDNTGTS 400 (453)
Q Consensus 358 ~~~~~GiDip~v-------------------------------------~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~ 400 (453)
++++||+||+.. .+||+++.|.|...|.||+||+||.|.+|.+
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999974 5999999999999999999999999999999
Q ss_pred EEEEcCCCh
Q psy9620 401 YTFFTQQNS 409 (453)
Q Consensus 401 ~~~~~~~~~ 409 (453)
++|++.+|.
T Consensus 577 ~~fls~eD~ 585 (853)
T 2fsf_A 577 RFYLSMEDA 585 (853)
T ss_dssp EEEEETTSG
T ss_pred EEEecccHH
Confidence 999998763
No 45
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.3e-34 Score=293.84 Aligned_cols=264 Identities=18% Similarity=0.154 Sum_probs=195.4
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCC
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSST 213 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~ 213 (453)
.+|+++|.++++.+++++++++++|||+|||++|+++++..+.. ..+++|||+||++|+.|+.+.+.+++...
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-------CSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 38999999999999999999999999999999999988877653 23479999999999999999999987666
Q ss_pred CceEEEEeCCccCCC----C----------------------------------------------CCceEEEEeccCcH
Q psy9620 214 YLRSTCVYGGASKGP----Q----------------------------------------------PDRQVLMWSATWPR 243 (453)
Q Consensus 214 ~~~~~~~~gg~~~~~----~----------------------------------------------~~~q~v~~SAT~~~ 243 (453)
.+++..++++..... . ...+++++|||++.
T Consensus 185 ~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l~lSATp~~ 264 (510)
T 2oca_A 185 HAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRD 264 (510)
T ss_dssp GGGEEECGGGCCTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEEEEESCGGG
T ss_pred ccceEEEecCCccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCcccHHHHHHhcccCcEEEEEEeCCCC
Confidence 677888877765531 1 46789999999976
Q ss_pred HHHHHHH-HhhccceEEEeccccc-----ccCccceeEEEEc---------------------cccchhhhHHHHHHhhh
Q psy9620 244 EVQKLAE-DFLDSYIQINIGSLTL-----SANHNIQQVVEVC---------------------AEHEKENKLFGLLNDIS 296 (453)
Q Consensus 244 ~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~---------------------~~~~k~~~l~~ll~~~~ 296 (453)
....+.. ..+.++....+..... .....+....... ....+...+.+++....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 344 (510)
T 2oca_A 265 GKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLA 344 (510)
T ss_dssp CSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 5432111 1112222211111100 0000001100000 01122333444554443
Q ss_pred cCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe-ccCccCCCCCCCcEEEEc
Q psy9620 297 SKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVAT-DVAARGLDVDDVKFVINF 375 (453)
Q Consensus 297 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~GiDip~v~~VI~~ 375 (453)
.....++||||+ .+.++.+++.|...+..+..+||+|++.+|+.+++.|++|+.+||||| +++++|+|+|++++||++
T Consensus 345 ~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~ 423 (510)
T 2oca_A 345 QKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLA 423 (510)
T ss_dssp TTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEES
T ss_pred hcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEe
Confidence 333445566655 899999999999988899999999999999999999999999999999 999999999999999999
Q ss_pred CCCCChhHHHHhhhcccCCCCcceEEEEEc
Q psy9620 376 DYPNNSEDYIHRIGRTGRSDNTGTSYTFFT 405 (453)
Q Consensus 376 d~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 405 (453)
+.|.+...|+|++||+||.|+.+.++++++
T Consensus 424 ~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 424 HGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999988775555555
No 46
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.4e-33 Score=287.65 Aligned_cols=265 Identities=20% Similarity=0.235 Sum_probs=203.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+|+ .|+++|..++|.+++|+ |+.++||+|||++|.+|++..... ++.|+||+||++||.|+++++..++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 588 99999999999999998 999999999999999999765432 4459999999999999999999999
Q ss_pred CCCCceEEEEeCCccCCCC-------------------------------------------------------------
Q psy9620 211 SSTYLRSTCVYGGASKGPQ------------------------------------------------------------- 229 (453)
Q Consensus 211 ~~~~~~~~~~~gg~~~~~~------------------------------------------------------------- 229 (453)
...++++.+++||.+...+
T Consensus 177 ~~lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg 256 (922)
T 1nkt_A 177 RFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISG 256 (922)
T ss_dssp HHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEE
T ss_pred hhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecC
Confidence 8899999999988542110
Q ss_pred -----------------------------CCceEE-----------------EEeccCcHHHHHH---H--HHhhc-c--
Q psy9620 230 -----------------------------PDRQVL-----------------MWSATWPREVQKL---A--EDFLD-S-- 255 (453)
Q Consensus 230 -----------------------------~~~q~v-----------------~~SAT~~~~~~~~---~--~~~~~-~-- 255 (453)
..+|++ ++|||++.-...+ + ..++. +
T Consensus 257 ~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~d 336 (922)
T 1nkt_A 257 PADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKD 336 (922)
T ss_dssp ECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTT
T ss_pred CCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccc
Confidence 146777 8899987432222 1 11111 1
Q ss_pred ce-----EE---------------------------------------Eecccc--------------------------
Q psy9620 256 YI-----QI---------------------------------------NIGSLT-------------------------- 265 (453)
Q Consensus 256 ~~-----~~---------------------------------------~~~~~~-------------------------- 265 (453)
++ .+ .+....
T Consensus 337 YiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY 416 (922)
T 1nkt_A 337 YIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIY 416 (922)
T ss_dssp EEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHh
Confidence 00 00 000000
Q ss_pred ------cccCccc----eeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCC
Q psy9620 266 ------LSANHNI----QQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 335 (453)
Q Consensus 266 ------~~~~~~i----~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~ 335 (453)
.+.+..+ ...+.+....+|...+...+.... ....++||||+|+..++.|+..|...++++..+|+++.
T Consensus 417 ~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~-~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~ 495 (922)
T 1nkt_A 417 KLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY-AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH 495 (922)
T ss_dssp CCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH
T ss_pred CCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChh
Confidence 0001111 112334455566666666665442 23568999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCC----------------------------------------------
Q psy9620 336 QQERDYVLKEFRNGRAGILVATDVAARGLDVDDV---------------------------------------------- 369 (453)
Q Consensus 336 ~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v---------------------------------------------- 369 (453)
+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 496 ~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (922)
T 1nkt_A 496 EQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKE 573 (922)
T ss_dssp HHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhH
Confidence 88887788888877 699999999999999975
Q ss_pred ------cEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 370 ------KFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 370 ------~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
.+||+++.|.|...|.||+||+||.|.+|.+++|++.+|.
T Consensus 574 V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 574 VIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998775
No 47
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2e-34 Score=289.10 Aligned_cols=230 Identities=19% Similarity=0.226 Sum_probs=166.6
Q ss_pred HHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC---------
Q psy9620 144 WPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY--------- 214 (453)
Q Consensus 144 i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~--------- 214 (453)
...+.+++++|+++|||||||++|++|++..+.. .++++||++||++||.|+++.+..+.....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g~~v~~~~~~~~~~~t 87 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALRGLPVRYQTSAVQREHQ 87 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTTTSCEEECC--------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhcCceEeEEecccccCCC
Confidence 3445678999999999999999999999988764 356799999999999999998863310000
Q ss_pred --ceEEEEeCCc---------cCCC-C---------------------------CCceEEEEeccCcHHHHHHHHHhhcc
Q psy9620 215 --LRSTCVYGGA---------SKGP-Q---------------------------PDRQVLMWSATWPREVQKLAEDFLDS 255 (453)
Q Consensus 215 --~~~~~~~gg~---------~~~~-~---------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~ 255 (453)
..+..+..+. .... . .+.|+++||||++..+..+... ..
T Consensus 88 ~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~~~~~--~~ 165 (459)
T 2z83_A 88 GNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPDS--NA 165 (459)
T ss_dssp CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SS
T ss_pred CCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhhhccC--CC
Confidence 0000111000 0000 0 5789999999998654322111 11
Q ss_pred ceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCC
Q psy9620 256 YIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 335 (453)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~ 335 (453)
++.. +. .... ..+...+..++.. ..+++||||+++..|+.+++.|...++.+..+|+.
T Consensus 166 pi~~-~~--------------~~~~-~~~~~~~~~~l~~----~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~-- 223 (459)
T 2z83_A 166 PIHD-LQ--------------DEIP-DRAWSSGYEWITE----YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK-- 223 (459)
T ss_dssp CEEE-EE--------------CCCC-SSCCSSCCHHHHH----CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT--
T ss_pred CeEE-ec--------------ccCC-cchhHHHHHHHHh----cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH--
Confidence 2111 10 0001 1111122233332 25799999999999999999999999999999995
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEE--------------------cCCCCChhHHHHhhhcccCCC
Q psy9620 336 QQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVIN--------------------FDYPNNSEDYIHRIGRTGRSD 395 (453)
Q Consensus 336 ~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------------------~d~p~s~~~y~qr~GRagR~g 395 (453)
+|..+++.|++|+.+|||||+++++|||+|+ ++||+ ||.|.+.++|+||+|||||.|
T Consensus 224 --~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g 300 (459)
T 2z83_A 224 --SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNP 300 (459)
T ss_dssp --CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCT
T ss_pred --HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCC
Confidence 7888999999999999999999999999999 99999 779999999999999999998
Q ss_pred C-cceEEEEEcCC
Q psy9620 396 N-TGTSYTFFTQQ 407 (453)
Q Consensus 396 ~-~g~~~~~~~~~ 407 (453)
. +|.|++|+++.
T Consensus 301 ~~~G~~~~~~~~~ 313 (459)
T 2z83_A 301 NQVGDEYHYGGAT 313 (459)
T ss_dssp TCCCEEEEECSCC
T ss_pred CCCCeEEEEEccc
Confidence 7 89999999875
No 48
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.1e-33 Score=282.72 Aligned_cols=250 Identities=24% Similarity=0.270 Sum_probs=183.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY 214 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~ 214 (453)
.|+|+|.++++.+++++++++++|||+|||++|++++... +.++|||+|+++|+.|+.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~----~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF----G 157 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----C
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----C
Confidence 8999999999999999999999999999999999887753 345999999999999999999885 4
Q ss_pred ce-EEEEeCCccCCCC-------------------------------------------CCceEEEEeccCcH-------
Q psy9620 215 LR-STCVYGGASKGPQ-------------------------------------------PDRQVLMWSATWPR------- 243 (453)
Q Consensus 215 ~~-~~~~~gg~~~~~~-------------------------------------------~~~q~v~~SAT~~~------- 243 (453)
++ +..+.|+...... ...+++++|||+..
T Consensus 158 ~~~v~~~~g~~~~~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~ 237 (472)
T 2fwr_A 158 EEYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEI 237 (472)
T ss_dssp GGGEEEBSSSCBCCCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTSTTTHHHHHTCCCSEEEEEESCCCCTTSGGGS
T ss_pred CcceEEECCCcCCcCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCChHHHHHHHhcCCCeEEEEecCccCCCCHHHH
Confidence 66 7776666544322 56789999999862
Q ss_pred ------------HHHHHHHHhhccceE--EEecc--ccc---------------------ccCccceeEEE---------
Q psy9620 244 ------------EVQKLAEDFLDSYIQ--INIGS--LTL---------------------SANHNIQQVVE--------- 277 (453)
Q Consensus 244 ------------~~~~~~~~~~~~~~~--~~~~~--~~~---------------------~~~~~i~~~~~--------- 277 (453)
...++...++..+.. +.+.. ... .....+.+.+.
T Consensus 238 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (472)
T 2fwr_A 238 LKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAY 317 (472)
T ss_dssp HHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSS
T ss_pred HHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHH
Confidence 122222222222211 11100 000 00000000000
Q ss_pred ------------EccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Q psy9620 278 ------------VCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKE 345 (453)
Q Consensus 278 ------------~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 345 (453)
.+....|...+.+++.. ....++||||+++..++.+++.|. +..+|++++..+|..++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~ 389 (472)
T 2fwr_A 318 EALRAWEEARRIAFNSKNKIRKLREILER---HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEG 389 (472)
T ss_dssp TTTHHHHHHHHHHHSCSHHHHHHHHHHHH---TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHh---CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHH
Confidence 01112233444555544 346799999999999999999883 5678999999999999999
Q ss_pred HhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc-c--eEEEEEcCC
Q psy9620 346 FRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT-G--TSYTFFTQQ 407 (453)
Q Consensus 346 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~-g--~~~~~~~~~ 407 (453)
|++|+.+|||||+++++|+|+|++++||++|.|.+...|+||+||+||.|+. + .+|.|+++.
T Consensus 390 F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 390 FRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999843 3 445566554
No 49
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.2e-32 Score=274.14 Aligned_cols=216 Identities=17% Similarity=0.218 Sum_probs=155.8
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCC-
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKG- 227 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~- 227 (453)
+++++|+++|||||||++|++|++..+.. .++++||++||++||.|+++.+.. +.+....+.....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~~------~~v~~~~~~~~~~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALRG------EPIRYMTPAVQSER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTT------SCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhCC------CeEEEEecCccccC
Confidence 37899999999999999999999966654 356799999999999999887752 2222222210000
Q ss_pred ------------------------CC-----------------------------CCceEEEEeccCcHHHHHHHHHhhc
Q psy9620 228 ------------------------PQ-----------------------------PDRQVLMWSATWPREVQKLAEDFLD 254 (453)
Q Consensus 228 ------------------------~~-----------------------------~~~q~v~~SAT~~~~~~~~~~~~~~ 254 (453)
.. ...|+++||||+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~---- 143 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP---- 143 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC----
T ss_pred CCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC----
Confidence 00 478999999999864221110
Q ss_pred cceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCC
Q psy9620 255 SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDK 334 (453)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~ 334 (453)
. ...+....... ...+...+..++.. ..+++||||+++++++.+++.|...++.+..+||+
T Consensus 144 ~-------------~~~i~~~~~~~-~~~~~~~~~~~l~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~- 204 (431)
T 2v6i_A 144 S-------------NSPIIDEETRI-PDKAWNSGYEWITE----FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK- 204 (431)
T ss_dssp C-------------SSCCEEEECCC-CSSCCSSCCHHHHS----CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT-
T ss_pred C-------------CCceeeccccC-CHHHHHHHHHHHHc----CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc-
Confidence 0 00111000001 11122223333332 35689999999999999999999999999999997
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcE-----------------EEEcCCCCChhHHHHhhhcccCCCCc
Q psy9620 335 SQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKF-----------------VINFDYPNNSEDYIHRIGRTGRSDNT 397 (453)
Q Consensus 335 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~-----------------VI~~d~p~s~~~y~qr~GRagR~g~~ 397 (453)
+|..++++|++|+.+|||||+++++|||+| +.+ ||+++.|.+.++|+||+||+||.+..
T Consensus 205 ---~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~ 280 (431)
T 2v6i_A 205 ---TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEK 280 (431)
T ss_dssp ---THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred ---cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCC
Confidence 688899999999999999999999999999 554 67889999999999999999999854
Q ss_pred -ceEEEEE
Q psy9620 398 -GTSYTFF 404 (453)
Q Consensus 398 -g~~~~~~ 404 (453)
+.+++|.
T Consensus 281 ~~~~~~~~ 288 (431)
T 2v6i_A 281 LGDIYAYS 288 (431)
T ss_dssp CCCEEEEC
T ss_pred CCeEEEEc
Confidence 4445544
No 50
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.98 E-value=4.2e-31 Score=266.50 Aligned_cols=173 Identities=15% Similarity=0.184 Sum_probs=133.9
Q ss_pred CceEEEEeccCcHHHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcch
Q psy9620 231 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETK 310 (453)
Q Consensus 231 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~ 310 (453)
-.++..||+|...+..++.+.|..+.+ .+.... +......+...+....+|...+...+..... ...++||||+|+
T Consensus 409 Y~kL~GMTGTa~te~~Ef~~iY~l~vv--~IPtnk-p~~R~d~~d~vy~t~~eK~~al~~~I~~~~~-~gqpVLVFt~S~ 484 (822)
T 3jux_A 409 YEKLAGMTGTAKTEESEFVQVYGMEVV--VIPTHK-PMIRKDHDDLVFRTQKEKYEKIVEEIEKRYK-KGQPVLVGTTSI 484 (822)
T ss_dssp SSEEEEEESSCGGGHHHHHHHSCCCEE--ECCCSS-CCCCEECCCEEESSHHHHHHHHHHHHHHHHH-HTCCEEEEESSH
T ss_pred hhHHeEECCCCchHHHHHHHHhCCeEE--EECCCC-CcceeecCcEEEecHHHHHHHHHHHHHHHhh-CCCCEEEEECCH
Confidence 457899999999888777766654433 222211 1111112234455666777777777765422 356999999999
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCC--------CCcEEEEcCCCCChh
Q psy9620 311 RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVD--------DVKFVINFDYPNNSE 382 (453)
Q Consensus 311 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip--------~v~~VI~~d~p~s~~ 382 (453)
..++.|+..|...++++..+|++..+.++..+...++.| .|+|||++++||+||+ +..+||++++|.+..
T Consensus 485 e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r 562 (822)
T 3jux_A 485 EKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRR 562 (822)
T ss_dssp HHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHH
T ss_pred HHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHH
Confidence 999999999999999999999986555555555556555 6999999999999998 566999999999999
Q ss_pred HHHHhhhcccCCCCcceEEEEEcCCCh
Q psy9620 383 DYIHRIGRTGRSDNTGTSYTFFTQQNS 409 (453)
Q Consensus 383 ~y~qr~GRagR~g~~g~~~~~~~~~~~ 409 (453)
.|+||+|||||.|.+|.+++|++.+|.
T Consensus 563 ~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 563 IDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp HHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred HHHHhhCccccCCCCeeEEEEechhHH
Confidence 999999999999999999999998873
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.98 E-value=2.9e-33 Score=286.32 Aligned_cols=230 Identities=21% Similarity=0.202 Sum_probs=164.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY 214 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~ 214 (453)
.+++.|.++++.+.++++++++||||||||++|.+|++. .+.++||++|||+||.|+++.+.+.. +
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-----------~g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-----------QGYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------CCCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 445566666666778899999999999999999998875 24479999999999999998876653 2
Q ss_pred ceEEEEeCCccCCCC-------------------------------------------------CCce--EEEEeccCcH
Q psy9620 215 LRSTCVYGGASKGPQ-------------------------------------------------PDRQ--VLMWSATWPR 243 (453)
Q Consensus 215 ~~~~~~~gg~~~~~~-------------------------------------------------~~~q--~v~~SAT~~~ 243 (453)
..+...+|+...... ..+| ++++|||++.
T Consensus 283 ~~vg~~vG~~~~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 283 IDPNIRTGVRTITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp CCCEEECSSCEECCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred CCeeEEECcEeccCCCCEEEECcHHHHhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 233333443221111 2334 7778999886
Q ss_pred HHHHHHHHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc
Q psy9620 244 EVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY 323 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~ 323 (453)
.+. ...+....+.. .... .+........ +. ....+++||||++++.++.+++.|.+.
T Consensus 363 ~i~------~~~p~i~~v~~---~~~~----~i~~~~~~~~-------l~---~~~~~~vLVFv~Tr~~ae~la~~L~~~ 419 (666)
T 3o8b_A 363 SVT------VPHPNIEEVAL---SNTG----EIPFYGKAIP-------IE---AIRGGRHLIFCHSKKKCDELAAKLSGL 419 (666)
T ss_dssp CCC------CCCTTEEEEEC---BSCS----SEEETTEEEC-------GG---GSSSSEEEEECSCHHHHHHHHHHHHTT
T ss_pred ccc------cCCcceEEEee---cccc----hhHHHHhhhh-------hh---hccCCcEEEEeCCHHHHHHHHHHHHhC
Confidence 311 01111111000 0000 0111110000 11 124679999999999999999999999
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEE----------EcC-----------CCCChh
Q psy9620 324 GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVI----------NFD-----------YPNNSE 382 (453)
Q Consensus 324 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI----------~~d-----------~p~s~~ 382 (453)
++.+..+||+|++.+ |+++..+|||||+++++|||+| |++|| ||| .|.+.+
T Consensus 420 g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~ 491 (666)
T 3o8b_A 420 GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAV 491 (666)
T ss_dssp TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHH
T ss_pred CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHH
Confidence 999999999999875 4566779999999999999997 99988 677 899999
Q ss_pred HHHHhhhcccCCCCcceEEEEEcCCChHH
Q psy9620 383 DYIHRIGRTGRSDNTGTSYTFFTQQNSRQ 411 (453)
Q Consensus 383 ~y~qr~GRagR~g~~g~~~~~~~~~~~~~ 411 (453)
+|+||+||+|| +.+|. ++|+++.+...
T Consensus 492 syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 492 SRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp HHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred HHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 99999999999 89999 99998876544
No 52
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.98 E-value=1.7e-31 Score=235.51 Aligned_cols=181 Identities=38% Similarity=0.544 Sum_probs=147.9
Q ss_pred HHhhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEE
Q psy9620 250 EDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVG 329 (453)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~ 329 (453)
..|+.+|..+.+.... ....++.+.+..+...+|...|.+++.. ...++||||+++..++.++..|...++.+..
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~----~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQK----TPPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTT----SCSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHh----CCCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 4677888888876655 4557889999888888888777777654 2468999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCC-C
Q psy9620 330 IHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ-N 408 (453)
Q Consensus 330 ~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-~ 408 (453)
+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|++|.|++|+++. +
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986 7
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHh
Q psy9620 409 SRQAKDLIDVLTESNHPVDPKLSALAS 435 (453)
Q Consensus 409 ~~~~~~l~~~l~~~~~~v~~~l~~~~~ 435 (453)
...++.+.+.++...+++|++|.++++
T Consensus 164 ~~~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 164 ESVLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred HHHHHHHHHHHHHccCcCCHHHHhhcC
Confidence 888999999999999999999988764
No 53
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=229.46 Aligned_cols=168 Identities=44% Similarity=0.711 Sum_probs=143.2
Q ss_pred ccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHH
Q psy9620 267 SANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEF 346 (453)
Q Consensus 267 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 346 (453)
....++.+.+..+...+|...|.+++... ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 44578899999998888988888888764 2467999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCC
Q psy9620 347 RNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPV 426 (453)
Q Consensus 347 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v 426 (453)
++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.+...++++.+.+....+++
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 172 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV 172 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhh
Q psy9620 427 DPKLSALASR 436 (453)
Q Consensus 427 ~~~l~~~~~~ 436 (453)
|++|.+++..
T Consensus 173 ~~~l~~~a~~ 182 (185)
T 2jgn_A 173 PSWLENMAYE 182 (185)
T ss_dssp CHHHHHHHC-
T ss_pred CHHHHHHHHH
Confidence 9999999864
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=3.3e-30 Score=266.78 Aligned_cols=234 Identities=21% Similarity=0.202 Sum_probs=167.1
Q ss_pred HHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeC
Q psy9620 143 GWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYG 222 (453)
Q Consensus 143 ~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g 222 (453)
.....+++++++++||||||||+ +++..+... +.+||++|||+||.|+++.+.++ ++++..++|
T Consensus 148 p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG 211 (677)
T 3rc3_A 148 PDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTG 211 (677)
T ss_dssp HHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECS
T ss_pred HHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEEC
Confidence 33455689999999999999997 444444432 23699999999999999999886 456666666
Q ss_pred CccCCCC---------------------------------------------------CCceEEEEeccCcHHHHHHHHH
Q psy9620 223 GASKGPQ---------------------------------------------------PDRQVLMWSATWPREVQKLAED 251 (453)
Q Consensus 223 g~~~~~~---------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~ 251 (453)
+...... ...+++++|||. +.+..++..
T Consensus 212 ~~~~iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~ 290 (677)
T 3rc3_A 212 EERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYT 290 (677)
T ss_dssp SCEECCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHH
T ss_pred CeeEEecCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHh
Confidence 6433110 346788888884 334444443
Q ss_pred hhccceEEEecccccccCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEc
Q psy9620 252 FLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH 331 (453)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h 331 (453)
.. ..+.+... . ..... ... .. .+..+..+ ....||||+++++++.+++.|...++.+..+|
T Consensus 291 ~~-~~~~v~~~--~--r~~~l----~~~-----~~-~l~~l~~~----~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lH 351 (677)
T 3rc3_A 291 TG-EEVEVRDY--K--RLTPI----SVL-----DH-ALESLDNL----RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIY 351 (677)
T ss_dssp HT-CCEEEEEC--C--CSSCE----EEC-----SS-CCCSGGGC----CTTEEEECSSHHHHHHHHHHHHHTTCCCEEEC
T ss_pred cC-CceEEEEe--e--ecchH----HHH-----HH-HHHHHHhc----CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeee
Confidence 32 22222110 0 00000 000 00 00111111 34568999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhc--CCCcEEEEeccCccCCCCCCCcEEEEcCC--------------CCChhHHHHhhhcccCCC
Q psy9620 332 GDKSQQERDYVLKEFRN--GRAGILVATDVAARGLDVDDVKFVINFDY--------------PNNSEDYIHRIGRTGRSD 395 (453)
Q Consensus 332 ~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~GiDip~v~~VI~~d~--------------p~s~~~y~qr~GRagR~g 395 (453)
|+|++.+|..+++.|++ |+.+|||||+++++|||+ +|++||++++ |.+.++|+||+|||||.|
T Consensus 352 G~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g 430 (677)
T 3rc3_A 352 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFS 430 (677)
T ss_dssp TTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTT
T ss_pred ccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCC
Confidence 99999999999999999 899999999999999999 9999999999 779999999999999998
Q ss_pred Cc---ceEEEEEcCCChHHHHH
Q psy9620 396 NT---GTSYTFFTQQNSRQAKD 414 (453)
Q Consensus 396 ~~---g~~~~~~~~~~~~~~~~ 414 (453)
.. |.|+.++ +++...+++
T Consensus 431 ~~g~~G~v~~l~-~~d~~~~~~ 451 (677)
T 3rc3_A 431 SRFKEGEVTTMN-HEDLSLLKE 451 (677)
T ss_dssp SSCSSEEEEESS-TTHHHHHHH
T ss_pred CCCCCEEEEEEe-cchHHHHHH
Confidence 64 6665554 334333333
No 55
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.96 E-value=1.9e-29 Score=261.76 Aligned_cols=270 Identities=16% Similarity=0.155 Sum_probs=160.0
Q ss_pred CCCHHHHHHHHHHhc----C-CcEEEEecCCCcchhhhhHHHHHHhhhcC--CCCCCCCcEEEEEcCCHHHHHHHH-HHH
Q psy9620 135 RPTPIQAQGWPIAMS----G-SNMVGVAQTGSGKTLAYMLPAIVHINHQS--QLKPGDGPIVLVLAPTRELAQQIQ-EVA 206 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~----g-~d~li~a~TGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~vlil~Ptr~La~q~~-~~~ 206 (453)
.|+++|.++++.+++ + ++++++++||+|||++++.. +..+.... .......+++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~-~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQI-SWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH-HHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHH-HHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999998875 4 66899999999999996544 44443321 011124678999999999999998 777
Q ss_pred HHhcCCC----------CceEEEEeCCcc-C-----------CCC----------------------------CCceEEE
Q psy9620 207 RDFGSST----------YLRSTCVYGGAS-K-----------GPQ----------------------------PDRQVLM 236 (453)
Q Consensus 207 ~~~~~~~----------~~~~~~~~gg~~-~-----------~~~----------------------------~~~q~v~ 236 (453)
+.++... ...+.+..-+.- . ... +..++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~ 336 (590)
T 3h1t_A 257 TPFGDARHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIG 336 (590)
T ss_dssp TTTCSSEEECCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSEEEE
T ss_pred HhcchhhhhhhccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHHhCCcceEEE
Confidence 6654211 111111110000 0 000 4578999
Q ss_pred EeccCcHHHHHHHHHhhccceEE------------------Eeccccc----ccC--------ccceeEEEEccc-----
Q psy9620 237 WSATWPREVQKLAEDFLDSYIQI------------------NIGSLTL----SAN--------HNIQQVVEVCAE----- 281 (453)
Q Consensus 237 ~SAT~~~~~~~~~~~~~~~~~~~------------------~~~~~~~----~~~--------~~i~~~~~~~~~----- 281 (453)
+|||+..........++..++.. .+..... ... ..+.........
T Consensus 337 lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (590)
T 3h1t_A 337 MTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVI 416 (590)
T ss_dssp EESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHH
T ss_pred eccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHh
Confidence 99998743332223333322211 1100000 000 000000000000
Q ss_pred --cchhhhHHHHHHhhhc--CCCCcEEEEEcchhHHHHHHHHHHhcCC--------eEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 282 --HEKENKLFGLLNDISS--KDENKTIIFAETKRKVDKITKSIQNYGW--------AAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 282 --~~k~~~l~~ll~~~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~--------~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
..+...+...+..+.. ....++||||+++..|+.+++.|...+. .+..+||+++. +|..++++|+++
T Consensus 417 ~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~ 495 (590)
T 3h1t_A 417 ALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQEL 495 (590)
T ss_dssp HHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCT
T ss_pred cChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCC
Confidence 0111122222222111 2347999999999999999999987543 27889998764 799999999998
Q ss_pred CCc---EEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCC--cceEEEEEcC
Q psy9620 350 RAG---ILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDN--TGTSYTFFTQ 406 (453)
Q Consensus 350 ~~~---vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~ 406 (453)
+.+ |||||+++++|||+|++++||+++.|.|...|+||+||++|.+. ....+++++-
T Consensus 496 ~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 496 ETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp TCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred CCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEec
Confidence 876 88999999999999999999999999999999999999999875 2334444443
No 56
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=1e-28 Score=212.56 Aligned_cols=152 Identities=36% Similarity=0.594 Sum_probs=140.7
Q ss_pred cCccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh
Q psy9620 268 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFR 347 (453)
Q Consensus 268 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 347 (453)
...++.+.+..+...+|...|..++... ...++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|+
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 3456888888888888988888888764 4569999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 348 NGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 348 ~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
+|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|++|.|++|+++.+...++.+.+.+...
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999988888776544
No 57
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=2.6e-29 Score=216.81 Aligned_cols=159 Identities=36% Similarity=0.615 Sum_probs=139.4
Q ss_pred cceeEEEEccccc-hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 271 NIQQVVEVCAEHE-KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 271 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
++++.+..+...+ |...|.+++... ...++||||+++..++.++..|...++.+..+|++|++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5677777777666 888888888764 457999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChH
Q psy9620 350 RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPK 429 (453)
Q Consensus 350 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~ 429 (453)
+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|++|.|++|+++.+...++.+.+.+....+++|..
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888777777765
Q ss_pred HHH
Q psy9620 430 LSA 432 (453)
Q Consensus 430 l~~ 432 (453)
+.+
T Consensus 160 ~~~ 162 (165)
T 1fuk_A 160 IAT 162 (165)
T ss_dssp CTT
T ss_pred HHh
Confidence 443
No 58
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=6.9e-29 Score=215.45 Aligned_cols=160 Identities=28% Similarity=0.518 Sum_probs=141.6
Q ss_pred ccceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 270 HNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 270 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
..+.+.+..+...+|...|.+++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 56788888888888888888888764 456999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCC-ChHHHHHHHHHHHhcCCCCCh
Q psy9620 350 RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQ-NSRQAKDLIDVLTESNHPVDP 428 (453)
Q Consensus 350 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~v~~ 428 (453)
+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++. +...++.+.+.+....+++|.
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 9999999999999999999999999999999999999999999999999999999875 456778888887777777777
Q ss_pred HHHH
Q psy9620 429 KLSA 432 (453)
Q Consensus 429 ~l~~ 432 (453)
.+..
T Consensus 161 ~~~~ 164 (172)
T 1t5i_A 161 EIDI 164 (172)
T ss_dssp ----
T ss_pred hhch
Confidence 6543
No 59
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.96 E-value=1.7e-28 Score=225.52 Aligned_cols=177 Identities=64% Similarity=1.127 Sum_probs=156.6
Q ss_pred CCHHHHHHHHHHcCCeeccc-CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhh
Q psy9620 88 RSPHEVQAFRDKHQMTLKGN-APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~-~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~ 166 (453)
.+.+++..++....+.+.+. .|.|+.+|+++++++.+++.+.+.||..|+++|.++|+.+++++|++++||||||||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 35567889999999999888 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-----------------
Q psy9620 167 YMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ----------------- 229 (453)
Q Consensus 167 ~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------- 229 (453)
|++|++..+..........++++|||+||++|+.|+.+.++++....++++.+++|+.....+
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 999999998876554555688999999999999999999999988788888888887643211
Q ss_pred -------------------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEeccc
Q psy9620 230 -------------------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL 264 (453)
Q Consensus 230 -------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 264 (453)
+++|+++||||+|+++.++++.++.+++.+.+...
T Consensus 163 l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 57899999999999999999999999998887654
No 60
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=3.1e-28 Score=212.25 Aligned_cols=154 Identities=30% Similarity=0.550 Sum_probs=134.3
Q ss_pred CccceeEEEEccccc-hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh
Q psy9620 269 NHNIQQVVEVCAEHE-KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFR 347 (453)
Q Consensus 269 ~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 347 (453)
..++.+.+..+...+ |...|..++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 457888888887654 777777776653 4579999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeccCccCCCCCCCcEEEEcCCC------CChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHh
Q psy9620 348 NGRAGILVATDVAARGLDVDDVKFVINFDYP------NNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTE 421 (453)
Q Consensus 348 ~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 421 (453)
+|+.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.|++|+++.+...++.+.+.+..
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 9999999999999999999999999999998888888877765
Q ss_pred cCCC
Q psy9620 422 SNHP 425 (453)
Q Consensus 422 ~~~~ 425 (453)
..++
T Consensus 162 ~~~~ 165 (175)
T 2rb4_A 162 SIKQ 165 (175)
T ss_dssp CCEE
T ss_pred cccc
Confidence 4433
No 61
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.95 E-value=1.2e-27 Score=259.35 Aligned_cols=134 Identities=19% Similarity=0.269 Sum_probs=114.0
Q ss_pred hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHh-cCCeEEEEcCCCCHHHHHHHHHHHhcCC--CcEEEEeccC
Q psy9620 284 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN-YGWAAVGIHGDKSQQERDYVLKEFRNGR--AGILVATDVA 360 (453)
Q Consensus 284 k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vLvaT~~~ 360 (453)
|...+..++.. ....++||||+++..++.++..|.. .++.+..+||+|++.+|+.++++|++|+ ++|||||+++
T Consensus 490 K~~~L~~ll~~---~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~ 566 (968)
T 3dmq_A 490 RVEWLMGYLTS---HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG 566 (968)
T ss_dssp HHHHHHHHHHH---TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCT
T ss_pred HHHHHHHHHHh---CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchh
Confidence 44445555544 3567999999999999999999995 5999999999999999999999999998 9999999999
Q ss_pred ccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHH
Q psy9620 361 ARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLT 420 (453)
Q Consensus 361 ~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 420 (453)
++|||+|++++||+||+|.++..|+||+||++|.|+.+.|+++....+....+.+.+.+.
T Consensus 567 ~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~ 626 (968)
T 3dmq_A 567 SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYH 626 (968)
T ss_dssp TCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHH
T ss_pred hcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999999887766655444344444555543
No 62
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=2.7e-27 Score=212.58 Aligned_cols=148 Identities=32% Similarity=0.551 Sum_probs=132.2
Q ss_pred ceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q psy9620 272 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRA 351 (453)
Q Consensus 272 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 351 (453)
+.+....+....|...|..++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~ 82 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEV 82 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH---CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 344455566677888888887653 46799999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 352 GILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 352 ~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
+|||||+++++|||+|++++||+||+|.+..+|+||+||+||.|++|.|++|+++.+...++.+.+.++..
T Consensus 83 ~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 83 RVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp CEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred eEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999988888887776644
No 63
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.95 E-value=2.1e-26 Score=234.30 Aligned_cols=135 Identities=17% Similarity=0.206 Sum_probs=105.4
Q ss_pred hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEEeccCc
Q psy9620 285 ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFRNG-RAG-ILVATDVAA 361 (453)
Q Consensus 285 ~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~-vLvaT~~~~ 361 (453)
...+.+++..+.. ...++||||+++..++.++..|... ++.+..+||++++.+|..++++|+++ ..+ +||+|++++
T Consensus 327 ~~~l~~~l~~~~~-~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~ 405 (500)
T 1z63_A 327 MIRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGG 405 (500)
T ss_dssp HHHHHHHHHHHHT-TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-
T ss_pred HHHHHHHHHHHHc-cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccccc
Confidence 3344455544432 4679999999999999999999885 99999999999999999999999998 555 799999999
Q ss_pred cCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceE--EEEEcCCChHHHHHHHHHHHhc
Q psy9620 362 RGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTS--YTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 362 ~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~--~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
+|+|++++++||++|+|+|+..|.|++||++|.|+...+ +.|++.... -..+.+.++..
T Consensus 406 ~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ti--ee~i~~~~~~K 466 (500)
T 1z63_A 406 FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL--EEKIDQLLAFK 466 (500)
T ss_dssp CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSH--HHHTHHHHTTC
T ss_pred CCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCH--HHHHHHHHHHH
Confidence 999999999999999999999999999999999877655 445555432 23344444433
No 64
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=1.1e-26 Score=218.36 Aligned_cols=149 Identities=32% Similarity=0.547 Sum_probs=131.6
Q ss_pred cceeEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q psy9620 271 NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR 350 (453)
Q Consensus 271 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 350 (453)
++.+.+..+...+|...|..++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~---~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~ 78 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE 78 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhc---CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC
Confidence 3566777778888888888888764 3679999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 351 AGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 351 ~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
.+|||||+++++|||+|++++||+||+|.+...|+||+||+||.|++|.|++|+++.+...++.+.+.+...
T Consensus 79 ~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 79 VRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 150 (300)
T ss_dssp CCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred ceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999999999999988888877766543
No 65
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=1.7e-24 Score=225.50 Aligned_cols=117 Identities=21% Similarity=0.357 Sum_probs=108.5
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC-
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY- 377 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~- 377 (453)
...++||||+|+..++.+++.|...++.+..+|+++++.+|..+++.|+.|+++|||||+++++|+|+|+|++||++|.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHH
Q psy9620 378 ----PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLI 416 (453)
Q Consensus 378 ----p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~ 416 (453)
|.+..+|+||+|||||. .+|.|++|+++.+....+.+.
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARN-ARGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcC-CCCEEEEEEcCCCHHHHHHHH
Confidence 89999999999999998 489999999987765544443
No 66
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=207.45 Aligned_cols=168 Identities=31% Similarity=0.559 Sum_probs=143.8
Q ss_pred HHHHHHHHcCCeeccc-CCCcccccccc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhh
Q psy9620 92 EVQAFRDKHQMTLKGN-APNPITEFAEA----NFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 92 ~~~~~~~~~~~~~~~~-~p~p~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~ 166 (453)
++..++..+.+.+.+. .|.|+.+|+++ ++++.+++.+.++||..|+++|.++++.+++++|+++++|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677888888988887 89999999987 899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC----------C-------
Q psy9620 167 YMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP----------Q------- 229 (453)
Q Consensus 167 ~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~----------~------- 229 (453)
|++|++..+.... ..++++||++||++|+.|+++.+++++...++++..++++..... .
T Consensus 83 ~~l~~l~~l~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQPA----NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSCC----SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhcc----cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 9999998885422 256789999999999999999999998776666655443321000 0
Q ss_pred --------------------------------------------------CCceEEEEeccCcHHHHHHHHHhhccceEE
Q psy9620 230 --------------------------------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQI 259 (453)
Q Consensus 230 --------------------------------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~ 259 (453)
...|+++||||++.++.++++.++.+++.+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 467999999999999999999999999988
Q ss_pred Eecc
Q psy9620 260 NIGS 263 (453)
Q Consensus 260 ~~~~ 263 (453)
.++.
T Consensus 239 ~~~~ 242 (245)
T 3dkp_A 239 SIGA 242 (245)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8765
No 67
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.88 E-value=9.7e-28 Score=208.00 Aligned_cols=149 Identities=30% Similarity=0.537 Sum_probs=132.1
Q ss_pred cceeEEEEccc-cchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 271 NIQQVVEVCAE-HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 271 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
++.+.+..+.. ..|...|.+++.. ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~---~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g 79 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ---PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 79 (170)
Confidence 35555666655 6677777777654 2456899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHHHHHHHHhc
Q psy9620 350 RAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTES 422 (453)
Q Consensus 350 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 422 (453)
+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.+...++.+.+.+...
T Consensus 80 ~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 80 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999888887777765543
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=6.4e-24 Score=221.37 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=104.8
Q ss_pred HHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCc---EEEEeccCccCC
Q psy9620 288 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAG---ILVATDVAARGL 364 (453)
Q Consensus 288 l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gi 364 (453)
+..++..+......++||||+....++.+...|...++.+..+||+++..+|..++++|+++... +||+|+++++||
T Consensus 404 l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gl 483 (644)
T 1z3i_X 404 LDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGL 483 (644)
T ss_dssp HHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTC
T ss_pred HHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCc
Confidence 44444444333467999999999999999999999999999999999999999999999998764 899999999999
Q ss_pred CCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcce--EEEEEcCC
Q psy9620 365 DVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGT--SYTFFTQQ 407 (453)
Q Consensus 365 Dip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~ 407 (453)
|++++++||+||+|+|+..|.|++||+.|.|+... ++.|++..
T Consensus 484 nl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 484 NLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp CCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred ccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999999999999999999987654 55566655
No 69
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.92 E-value=2.4e-23 Score=216.84 Aligned_cols=115 Identities=20% Similarity=0.370 Sum_probs=107.9
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCCCCCCCcEEEEcCC-
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY- 377 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~- 377 (453)
...++||||+|+..|+.+++.|...++.+..+|+++++.+|..+++.|++|+++|||||+++++|+|+|+|++||++|.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhHHHHhhhcccCCCCcceEEEEEcCCChHHHHH
Q psy9620 378 ----PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKD 414 (453)
Q Consensus 378 ----p~s~~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~ 414 (453)
|.+..+|+||+||+||. ..|.|++|+++.+....+.
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~ 563 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIA 563 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHH
Confidence 99999999999999998 7899999999877654443
No 70
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=197.80 Aligned_cols=152 Identities=41% Similarity=0.753 Sum_probs=127.6
Q ss_pred CCCccccccc-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCC-CCCC
Q psy9620 108 APNPITEFAE-ANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQL-KPGD 185 (453)
Q Consensus 108 ~p~p~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~ 185 (453)
.|.|+.+|++ +++++.+++++.+.||..|+++|.++++.+++++|+++++|||+|||++|++|++..+...... ....
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 7899999999 7999999999999999999999999999999999999999999999999999999887643211 1235
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC------------------------------------
Q psy9620 186 GPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------------------ 229 (453)
Q Consensus 186 ~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------------------ 229 (453)
++++||++||++|+.|+.+.++++. ..++++.+++|+.....+
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lV 172 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLV 172 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEE
Confidence 7889999999999999999999986 456788888887665432
Q ss_pred ------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEE
Q psy9620 230 ------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQIN 260 (453)
Q Consensus 230 ------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~ 260 (453)
.+.|++++|||+|+++++++..++.+++.+.
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 5789999999999999999999999988765
No 71
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.92 E-value=3.3e-24 Score=202.85 Aligned_cols=147 Identities=28% Similarity=0.442 Sum_probs=129.6
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG--SNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
++.+|++++|++.+++.|.++||..|+++|.++||.++.+ +|++++||||||||++|++|++.++... ..+++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-----~~~~~ 164 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-----CCCce
Confidence 4678999999999999999999999999999999999987 9999999999999999999999987543 24678
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCCC--------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGPQ-------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~-------------------------------------- 229 (453)
+|||+||++||.|+++.++.++... ++.+.+++++......
T Consensus 165 ~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEa 244 (300)
T 3fmo_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTH
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCH
Confidence 9999999999999999999998654 6777777776653321
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEec
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
..+|+++||||++.++..+++.++.+++.+.+.
T Consensus 245 d~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 245 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 568999999999999999999999999887664
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.5e-23 Score=222.17 Aligned_cols=123 Identities=20% Similarity=0.313 Sum_probs=106.2
Q ss_pred hhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC---cEEEEeccC
Q psy9620 284 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRA---GILVATDVA 360 (453)
Q Consensus 284 k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~---~vLvaT~~~ 360 (453)
|...|..++..+. ....++||||+....++.|...|...++.+..+||.++..+|..++++|+++.. .+|++|.++
T Consensus 557 K~~~L~~lL~~~~-~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ag 635 (800)
T 3mwy_W 557 KMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAG 635 (800)
T ss_dssp HHHHHHHHHHHHT-TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHH
T ss_pred HHHHHHHHHHHHh-hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccc
Confidence 3444555555543 245799999999999999999999999999999999999999999999998655 499999999
Q ss_pred ccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcce--EEEEEcCC
Q psy9620 361 ARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGT--SYTFFTQQ 407 (453)
Q Consensus 361 ~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~ 407 (453)
+.|||++.+++||+||+|+|+..+.|++||+.|.|+... ++.|++..
T Consensus 636 g~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 636 GLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp TTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred cCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 999999999999999999999999999999999987644 45566655
No 73
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.92 E-value=6.6e-25 Score=202.96 Aligned_cols=164 Identities=41% Similarity=0.643 Sum_probs=137.4
Q ss_pred Ceeccc-CCC--ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhc
Q psy9620 102 MTLKGN-APN--PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQ 178 (453)
Q Consensus 102 ~~~~~~-~p~--p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~ 178 (453)
+.+.+. .|. ++.+|+++++++.+++++.+.||..|+++|.++++.+++++|+++++|||+|||++|++|++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~ 88 (253)
T 1wrb_A 9 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQ 88 (253)
T ss_dssp CCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred eeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhh
Confidence 334444 555 88899999999999999999999999999999999999999999999999999999999999988654
Q ss_pred CCC----CCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-------------------------
Q psy9620 179 SQL----KPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ------------------------- 229 (453)
Q Consensus 179 ~~~----~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~------------------------- 229 (453)
... ....++++|||+||++|+.|+.+.+++++...++++..++|+.....+
T Consensus 89 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 168 (253)
T 1wrb_A 89 DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN 168 (253)
T ss_dssp CC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT
T ss_pred ccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 311 122457899999999999999999999988888888888887653211
Q ss_pred ------------------------------------C---CceEEEEeccCcHHHHHHHHHhhccceEEEecccc
Q psy9620 230 ------------------------------------P---DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLT 265 (453)
Q Consensus 230 ------------------------------------~---~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (453)
+ .+|++++|||+++++.++++.++.+++.+.+....
T Consensus 169 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 169 KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 1 67899999999999999999999999888876654
No 74
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.92 E-value=4e-24 Score=230.25 Aligned_cols=263 Identities=12% Similarity=0.058 Sum_probs=166.9
Q ss_pred CCCHHHHHHHHHHhc--------------CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHH
Q psy9620 135 RPTPIQAQGWPIAMS--------------GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ 200 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~--------------g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~ 200 (453)
.|+|+|.+|++.++. +++++++++||||||+++ ++++..+... ...+++|||+|+++|+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCCH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHHH
Confidence 599999999998875 368999999999999997 6666544321 13468999999999999
Q ss_pred HHHHHHHHhcCCC-----------------CceEEEEeC---------C--c-cCCCC----------------------
Q psy9620 201 QIQEVARDFGSST-----------------YLRSTCVYG---------G--A-SKGPQ---------------------- 229 (453)
Q Consensus 201 q~~~~~~~~~~~~-----------------~~~~~~~~g---------g--~-~~~~~---------------------- 229 (453)
|+.+.+..++... ...+.+.+- . . .....
T Consensus 345 Q~~~~f~~f~~~~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~~~~I~~ 424 (1038)
T 2w00_A 345 QTMKEYQRFSPDSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEAQKNLKK 424 (1038)
T ss_dssp HHHHHHHTTSTTCSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchHHHHHHHH
Confidence 9999988875321 111111110 0 0 00000
Q ss_pred --CCceEEEEeccCcHHHH----HHHHHhhccceEE-----------------Eeccccccc-----Ccc------ceeE
Q psy9620 230 --PDRQVLMWSATWPREVQ----KLAEDFLDSYIQI-----------------NIGSLTLSA-----NHN------IQQV 275 (453)
Q Consensus 230 --~~~q~v~~SAT~~~~~~----~~~~~~~~~~~~~-----------------~~~~~~~~~-----~~~------i~~~ 275 (453)
+..++++||||+..... .....++.+++.. ......... ... +.+.
T Consensus 425 ~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~ 504 (1038)
T 2w00_A 425 KFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQ 504 (1038)
T ss_dssp HCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCST
T ss_pred hCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHH
Confidence 67899999999864321 0111222222211 110000000 000 0000
Q ss_pred EEEccccchhhhHH-HHHHhhhcC--------CCCcEEEEEcchhHHHHHHHHHHhcC------------CeE-EEEcCC
Q psy9620 276 VEVCAEHEKENKLF-GLLNDISSK--------DENKTIIFAETKRKVDKITKSIQNYG------------WAA-VGIHGD 333 (453)
Q Consensus 276 ~~~~~~~~k~~~l~-~ll~~~~~~--------~~~~~lVF~~s~~~~~~l~~~L~~~~------------~~~-~~~h~~ 333 (453)
.......+...+. .++.++... ...++||||+++..|..+++.|...+ +.+ .++|++
T Consensus 505 -~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~ 583 (1038)
T 2w00_A 505 -QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFA 583 (1038)
T ss_dssp -TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCC
T ss_pred -HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCC
Confidence 0000111112222 233332111 23589999999999999999998753 455 445542
Q ss_pred ----------C----------CH-----------------------------HHHHHHHHHHhcCCCcEEEEeccCccCC
Q psy9620 334 ----------K----------SQ-----------------------------QERDYVLKEFRNGRAGILVATDVAARGL 364 (453)
Q Consensus 334 ----------~----------~~-----------------------------~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 364 (453)
+ ++ .+|..++++|++|+++|||+|+++.+|+
T Consensus 584 ~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGf 663 (1038)
T 2w00_A 584 ANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGF 663 (1038)
T ss_dssp C------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSC
T ss_pred CccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCc
Confidence 2 22 1478899999999999999999999999
Q ss_pred CCCCCcEEEEcCCCCChhHHHHhhhcccCCCCc----ceEEEEEc
Q psy9620 365 DVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNT----GTSYTFFT 405 (453)
Q Consensus 365 Dip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~----g~~~~~~~ 405 (453)
|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|..
T Consensus 664 DiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 664 DAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp CCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred Ccccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999 788999999999999999999999653 55555543
No 75
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.91 E-value=3.7e-24 Score=195.86 Aligned_cols=150 Identities=29% Similarity=0.460 Sum_probs=127.3
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
.|.++.+|+++++++.+++.+.++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+... ..++
T Consensus 25 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~~~~ 99 (237)
T 3bor_A 25 WNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----FKET 99 (237)
T ss_dssp --CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----SCSC
T ss_pred CCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CCCc
Confidence 56788999999999999999999999999999999999999999999999999999999999999887543 2466
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------- 229 (453)
++||++||++|+.|+.+.+++++...++.+..++|+.....+
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 899999999999999999999988777888877776543211
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEec
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
...|++++|||+++++.++++.++.+++.+.+.
T Consensus 180 DEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 180 DEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 578999999999999999999999998877553
No 76
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.91 E-value=1.1e-23 Score=190.97 Aligned_cols=151 Identities=29% Similarity=0.475 Sum_probs=129.8
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
.|.++.+|+++++++.+++.++++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+.... .++
T Consensus 9 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~-----~~~ 83 (224)
T 1qde_A 9 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-----KAP 83 (224)
T ss_dssp CCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC-----CSC
T ss_pred cCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC-----CCc
Confidence 677888999999999999999999999999999999999999999999999999999999999998875432 467
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC--------------------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ-------------------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------- 229 (453)
++||++||++|+.|+.+.+++++...++++..++|+.....+
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 84 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred eEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 899999999999999999999988888888888887653321
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecc
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 263 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 263 (453)
...|++++|||++.++.++++.++.+++.+.+..
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred hhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 5789999999999999999999999998776554
No 77
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=192.91 Aligned_cols=153 Identities=33% Similarity=0.456 Sum_probs=132.2
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 109 p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
+.++.+|+++++++.+++.+++.||..|+++|.++++.+++++|+++++|||+|||++|++|++..+..... ....+++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~~~~ 99 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-TSTDGLG 99 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-cccCCce
Confidence 566788999999999999999999999999999999999999999999999999999999999988765322 1124678
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC---------------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--------------------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--------------------------------------- 229 (453)
+||++||++|+.|+.+.+++++...++++.+++|+.....+
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 99999999999999999999988888888888887543210
Q ss_pred ---------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEec
Q psy9620 230 ---------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262 (453)
Q Consensus 230 ---------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
..+|++++|||+++++.++++.++.++..+.+.
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 478999999999999999999999999877654
No 78
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.91 E-value=5.3e-24 Score=196.19 Aligned_cols=148 Identities=33% Similarity=0.535 Sum_probs=131.2
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 109 p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
+.+..+|+++++++.+++.++++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+.... .+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCce
Confidence 34567899999999999999999999999999999999999999999999999999999999998887643 3667
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC---------C------------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP---------Q------------------------------ 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---------~------------------------------ 229 (453)
+||++||++|+.|+.+.+++++...++++.+++|+..... .
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 9999999999999999999998877888888888754211 0
Q ss_pred ----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEe
Q psy9620 230 ----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261 (453)
Q Consensus 230 ----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 261 (453)
.++|+++||||++.++.++++.++.+++.+.+
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 47899999999999999999999999987765
No 79
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.91 E-value=7.5e-24 Score=191.45 Aligned_cols=148 Identities=31% Similarity=0.519 Sum_probs=127.4
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
|..+|+++++++.+++.++++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+.... .++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~-----~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER-----AEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS-----CSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc-----CCceEE
Confidence 456899999999999999999999999999999999999999999999999999999999998875432 467899
Q ss_pred EEcCCHHHHHHHHHHHHHhcCCC----CceEEEEeCCccCCC---------C----------------------------
Q psy9620 191 VLAPTRELAQQIQEVARDFGSST----YLRSTCVYGGASKGP---------Q---------------------------- 229 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~~~----~~~~~~~~gg~~~~~---------~---------------------------- 229 (453)
|++||++|+.|+.+.++++.... ++++.+++|+..... .
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999987665 677888887754211 0
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEecc
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 263 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 263 (453)
...|++++|||++.++.++++.++.++..+.+..
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 4689999999999999999999999998876554
No 80
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.90 E-value=1.1e-23 Score=191.89 Aligned_cols=149 Identities=26% Similarity=0.429 Sum_probs=126.5
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCc
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGP 187 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 187 (453)
.|.+..+|+++++++.+++.++++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+.... .++
T Consensus 19 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~~ 93 (230)
T 2oxc_A 19 LLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN-----LST 93 (230)
T ss_dssp -----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS-----CSC
T ss_pred CCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC-----CCc
Confidence 677788999999999999999999999999999999999999999999999999999999999998875432 467
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCC--------C-----------------------------
Q psy9620 188 IVLVLAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGP--------Q----------------------------- 229 (453)
Q Consensus 188 ~vlil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~--------~----------------------------- 229 (453)
++||++||++|+.|+.+.+++++... ++++.+++|+..... .
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViD 173 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILD 173 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEES
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeC
Confidence 89999999999999999999997654 788888888754211 0
Q ss_pred -----------------------CCceEEEEeccCcHHHHHHHHHhhccceEEEe
Q psy9620 230 -----------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261 (453)
Q Consensus 230 -----------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 261 (453)
...|++++|||++.++.+++..++.+++.+.+
T Consensus 174 Eah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 174 EADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp SHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 36799999999999999999999988877654
No 81
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.90 E-value=3.5e-23 Score=185.19 Aligned_cols=142 Identities=30% Similarity=0.556 Sum_probs=124.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEE
Q psy9620 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVL 192 (453)
Q Consensus 113 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 192 (453)
.+|+++++++.+++.+.++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999877543 246789999
Q ss_pred cCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCC---------C---------------------------------
Q psy9620 193 APTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGP---------Q--------------------------------- 229 (453)
Q Consensus 193 ~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~---------~--------------------------------- 229 (453)
+||++|+.|+.+.+.++.... ++++..++|+..... .
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999998766 678888887754211 0
Q ss_pred ------------------CCceEEEEeccCcHHHHHHHHHhhccceEE
Q psy9620 230 ------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQI 259 (453)
Q Consensus 230 ------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~ 259 (453)
...|++++|||+|.++.++++.++.+++.+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 478999999999999999999999888754
No 82
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.89 E-value=5.4e-23 Score=185.92 Aligned_cols=147 Identities=26% Similarity=0.434 Sum_probs=125.2
Q ss_pred CCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcE
Q psy9620 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPI 188 (453)
Q Consensus 109 p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 188 (453)
+....+|+++++++.+++.+.+.||..|+++|.++++.+++++|+++++|||+|||++|++|++..+... ..+++
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 84 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVS 84 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCC
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEE
Confidence 3445679999999999999999999999999999999999999999999999999999999999876432 13568
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcCCC-CceEEEEeCCccCCC----------C----------------------------
Q psy9620 189 VLVLAPTRELAQQIQEVARDFGSST-YLRSTCVYGGASKGP----------Q---------------------------- 229 (453)
Q Consensus 189 vlil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~----------~---------------------------- 229 (453)
+||++||++|+.|+.+.++++.... ++++.+++|+..... .
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 9999999999999999999997665 788888888754210 1
Q ss_pred ------------------------CCceEEEEeccCcHHHHHHHHHhhccceEEE
Q psy9620 230 ------------------------PDRQVLMWSATWPREVQKLAEDFLDSYIQIN 260 (453)
Q Consensus 230 ------------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~ 260 (453)
...|++++|||++.++.++++.++.+++.+.
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 4689999999999999999999999987664
No 83
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.89 E-value=1.5e-22 Score=181.11 Aligned_cols=144 Identities=38% Similarity=0.675 Sum_probs=124.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 114 EFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 114 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
+|+++++++.+++.+++.||..|+++|.++++.+++++|+++++|||+|||++|++|++..+..... ...++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE--RGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC--TTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCcEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999988764321 23567899999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCC---------C-----------------------------------
Q psy9620 194 PTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGP---------Q----------------------------------- 229 (453)
Q Consensus 194 Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~---------~----------------------------------- 229 (453)
||++|+.|+.+.++++... +++..++|+..... +
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999999999754 56777777654211 0
Q ss_pred ----------------CCceEEEEeccCcHHHHHHHHHhhccceEEEe
Q psy9620 230 ----------------PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261 (453)
Q Consensus 230 ----------------~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 261 (453)
...|++++|||++.++.++++.++.+++.+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 47899999999999999999999999887654
No 84
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.3e-22 Score=186.64 Aligned_cols=143 Identities=34% Similarity=0.493 Sum_probs=120.0
Q ss_pred ccccccC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEE
Q psy9620 113 TEFAEAN--FPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVL 190 (453)
Q Consensus 113 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 190 (453)
.+|++++ +++.+++.++++||..|+++|.++++.++.++|++++||||||||++|++|++..+..... ....++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-MPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-cccCCceEE
Confidence 4566665 9999999999999999999999999999999999999999999999999999998876432 122467899
Q ss_pred EEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCC-----------------------------------------
Q psy9620 191 VLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ----------------------------------------- 229 (453)
Q Consensus 191 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------------------------------- 229 (453)
||+||++||.|+++.+++++...++.+.+++|+.....+
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 999999999999999999988888888888877542211
Q ss_pred --------------------CCceEEEEeccCcHHHHHHHHHhhccc
Q psy9620 230 --------------------PDRQVLMWSATWPREVQKLAEDFLDSY 256 (453)
Q Consensus 230 --------------------~~~q~v~~SAT~~~~~~~~~~~~~~~~ 256 (453)
..+|+++||||+++++.++++.++.+.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 568999999999999999999888754
No 85
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.87 E-value=1e-20 Score=194.69 Aligned_cols=83 Identities=23% Similarity=0.207 Sum_probs=74.3
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+|+ .|+++|..++|.+++|+ |+.++||+|||++|.+|++..... +..|+||+||++||.|.++++..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 589 99999999999999998 999999999999999999755432 4459999999999999999999999
Q ss_pred CCCCceEEEEeCCc
Q psy9620 211 SSTYLRSTCVYGGA 224 (453)
Q Consensus 211 ~~~~~~~~~~~gg~ 224 (453)
...++++.+++|+.
T Consensus 145 ~~lGLsv~~i~Gg~ 158 (997)
T 2ipc_A 145 RGLGLSVGVIQHAS 158 (997)
T ss_dssp HTTTCCEEECCTTC
T ss_pred HhcCCeEEEEeCCC
Confidence 88899998888764
No 86
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.79 E-value=4.8e-19 Score=164.29 Aligned_cols=128 Identities=18% Similarity=0.217 Sum_probs=100.1
Q ss_pred cccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEE
Q psy9620 280 AEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKEFRNG-RAG-ILVA 356 (453)
Q Consensus 280 ~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~-vLva 356 (453)
....|...|.+++..+.. ...++||||++...++.+...|... ++.+..+||++++.+|..++++|+++ ..+ +|++
T Consensus 93 ~~s~K~~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp TTCHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccCHHHHHHHHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 345688888888887643 3579999999999999999999885 99999999999999999999999998 677 7899
Q ss_pred eccCccCCCCCCCcEEEEcCCCCChhHHHHhhhcccCCCCcceE--EEEEcCCC
Q psy9620 357 TDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTS--YTFFTQQN 408 (453)
Q Consensus 357 T~~~~~GiDip~v~~VI~~d~p~s~~~y~qr~GRagR~g~~g~~--~~~~~~~~ 408 (453)
|+++++|||++++++||+||+|+++..|.|++||++|.|+.+.+ +.|++...
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 99999999999999999999999999999999999999987654 55666553
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.67 E-value=7.3e-16 Score=157.28 Aligned_cols=115 Identities=14% Similarity=0.191 Sum_probs=74.1
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE--EeccCccC
Q psy9620 286 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILV--ATDVAARG 363 (453)
Q Consensus 286 ~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLv--aT~~~~~G 363 (453)
..+...+..+.....+.+|||++|...++.+++.|.. +. ..+++.. .+|+.+++.|+.+. .||+ +|..+++|
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EG 443 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecc
Confidence 3455555555555567999999999999999998864 33 4556654 46889999999864 6777 88999999
Q ss_pred CCCCC----CcEEEEcCCCCCh------------------------------hHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 364 LDVDD----VKFVINFDYPNNS------------------------------EDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 364 iDip~----v~~VI~~d~p~s~------------------------------~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
||+|+ +++||++++|... ..+.|.+||+-|...+--+++++++
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp --------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred eecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 99997 7899999988421 1236899999998555445555554
No 88
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.63 E-value=5.6e-15 Score=152.57 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=77.7
Q ss_pred hHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec--cCccCC
Q psy9620 287 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD--VAARGL 364 (453)
Q Consensus 287 ~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~Gi 364 (453)
.+.+.+..+.....+.+|||++|....+.+++.|.. +... ..-+++..++..++++|+ ++..||++|. .+++||
T Consensus 435 ~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGi 510 (620)
T 4a15_A 435 RMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGI 510 (620)
T ss_dssp HHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC----
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccc
Confidence 344444444444467899999999999999988862 2222 445566678999999999 8889999986 999999
Q ss_pred CCCC--CcEEEEcCCCCCh-----------------------------hHHHHhhhcccCCCCcceEEEEEcC
Q psy9620 365 DVDD--VKFVINFDYPNNS-----------------------------EDYIHRIGRTGRSDNTGTSYTFFTQ 406 (453)
Q Consensus 365 Dip~--v~~VI~~d~p~s~-----------------------------~~y~qr~GRagR~g~~g~~~~~~~~ 406 (453)
|+|+ ...||...+|... ....|-+||+-|...+--+++++++
T Consensus 511 D~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 511 NFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp ----CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred cCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 9996 5689988877321 1126899999998666555555554
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.59 E-value=8.2e-14 Score=142.64 Aligned_cols=79 Identities=20% Similarity=0.094 Sum_probs=66.6
Q ss_pred CCCCCCHHHHHHHHHH----hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 132 GFDRPTPIQAQGWPIA----MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 132 g~~~~~~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
|| +++|.|.+++..+ ..++++++.||||+|||++|++|++. .++++||++||++|+.|+.+++.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-----------~~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-----------VKPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-----------HCSEEEEEESSGGGHHHHHHHHT
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-----------CCCeEEEEcCCHHHHHHHHHHHH
Confidence 35 7999999987754 47899999999999999999999997 25679999999999999999998
Q ss_pred HhcCCCCceEEEEeC
Q psy9620 208 DFGSSTYLRSTCVYG 222 (453)
Q Consensus 208 ~~~~~~~~~~~~~~g 222 (453)
.+....++++.++.|
T Consensus 69 ~l~~~~~~~~~~l~g 83 (551)
T 3crv_A 69 KIREKRNITFSFLVG 83 (551)
T ss_dssp TCCCSSCCCEEECCC
T ss_pred HHhhhcCccEEEEcc
Confidence 886666666666555
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.47 E-value=1.2e-13 Score=129.18 Aligned_cols=86 Identities=21% Similarity=0.190 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTY 214 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~~ 214 (453)
.|+++|.++++.++++++.++++|||+|||+++++++...+.. ...++|||+||++|+.|+.+.+.+++....
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-------CCCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 8999999999999988889999999999999998887766543 233699999999999999999999987667
Q ss_pred ceEEEEeCCccCC
Q psy9620 215 LRSTCVYGGASKG 227 (453)
Q Consensus 215 ~~~~~~~gg~~~~ 227 (453)
..+..++++....
T Consensus 186 ~~~~~~~~~~~~~ 198 (282)
T 1rif_A 186 AMIKKIGGGASKD 198 (282)
T ss_dssp GGEEECSTTCSST
T ss_pred ceEEEEeCCCcch
Confidence 7788887776553
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.39 E-value=2.4e-12 Score=116.96 Aligned_cols=74 Identities=15% Similarity=0.037 Sum_probs=62.9
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
...++++|.++++.+.++++++++||||||||+++.++++..+..... ...+.+|+++|+++|+.|+.+.+...
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999988877655322 23568999999999999998888764
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.33 E-value=1.1e-11 Score=112.67 Aligned_cols=77 Identities=23% Similarity=0.093 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCC
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSST 213 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~ 213 (453)
..|+++|.++++.+++++++++++|||+|||++++.++... +.++||++|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 38999999999999999999999999999999988776542 345999999999999999998884
Q ss_pred Cce-EEEEeCCcc
Q psy9620 214 YLR-STCVYGGAS 225 (453)
Q Consensus 214 ~~~-~~~~~gg~~ 225 (453)
+++ +..+.++..
T Consensus 157 ~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 157 GEEYVGEFSGRIK 169 (237)
T ss_dssp CGGGEEEESSSCB
T ss_pred CCCeEEEEeCCCC
Confidence 466 666665543
No 93
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.32 E-value=1.9e-12 Score=115.81 Aligned_cols=93 Identities=23% Similarity=0.221 Sum_probs=73.9
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHH-HHHHHHHhcC
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQ-IQEVARDFGS 211 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q-~~~~~~~~~~ 211 (453)
...|+++|.++++.+++++++++++|||+|||++++++++..+...... ..++++||++|+++|+.| +.+.+.++..
T Consensus 31 ~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA--SEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT--TCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred CCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc--cCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 4489999999999999999999999999999999999998776543211 135679999999999999 7788888865
Q ss_pred CCCceEEEEeCCccCCC
Q psy9620 212 STYLRSTCVYGGASKGP 228 (453)
Q Consensus 212 ~~~~~~~~~~gg~~~~~ 228 (453)
. ++++..+.|+.....
T Consensus 109 ~-~~~v~~~~g~~~~~~ 124 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKI 124 (216)
T ss_dssp T-TSCEEECCC---CCC
T ss_pred c-CceEEEEeCCcccch
Confidence 4 677888877765443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.92 E-value=8.9e-06 Score=83.77 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHhcCCcEEEEecCCCcch--hhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 137 TPIQAQGWPIAMSGSNMVGVAQTGSGKT--LAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 137 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT--~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
++.|+++++.++.+++++++|++||||| ++++++++..+.. ..+.++++++||..+|.++.+.+..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHH
Confidence 7899999999999999999999999999 5566776655421 1356799999999999999887664
No 95
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.28 E-value=0.0031 Score=58.56 Aligned_cols=147 Identities=10% Similarity=0.067 Sum_probs=97.4
Q ss_pred ccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC
Q psy9620 281 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA 360 (453)
Q Consensus 281 ~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 360 (453)
...|...|..+|..+.. .+.++|||++..+..+-+..+|...++....+.|.....++. -.+....|.+.|...
T Consensus 107 ~SGKf~~L~~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQE-YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp TCHHHHHHHHHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred cCccHHHHHHHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCC
Confidence 45677777788877754 467999999999999999999999999999999985543221 124555666667766
Q ss_pred ccCCC-----CCCCcEEEEcCCCCChhH-HHHhhhcccCC----CCcceEEEEEcCCChHHHHHHHHHHHhcCCCCChHH
Q psy9620 361 ARGLD-----VDDVKFVINFDYPNNSED-YIHRIGRTGRS----DNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKL 430 (453)
Q Consensus 361 ~~GiD-----ip~v~~VI~~d~p~s~~~-y~qr~GRagR~----g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~l 430 (453)
.-|++ ....+.||.||.-+++.. .+|.+-|+-|. +++-.+|-|++....+...-- +=+..+..-..+|
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~--~~~~~~~~~~~~l 258 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLF--FGKKFDKNSREYL 258 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHH--HHHHTCTTCHHHH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHH--ccCCCCcchHHHH
Confidence 66676 678899999999888775 58877777775 245678888887665443221 1112233444555
Q ss_pred HHHHh
Q psy9620 431 SALAS 435 (453)
Q Consensus 431 ~~~~~ 435 (453)
..+.+
T Consensus 259 ~k~i~ 263 (328)
T 3hgt_A 259 ENVTA 263 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.10 E-value=0.001 Score=69.07 Aligned_cols=69 Identities=19% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHhcCCc-EEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 134 DRPTPIQAQGWPIAMSGSN-MVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..+++-|.+|+..++..++ .||+||.|||||.+..-.+. .+.. .+.++|+++||..-+.++.+.+....
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~-~l~~-------~~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIIL-QAVK-------QGLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHH-HHHH-------TTCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHH-HHHh-------CCCeEEEEcCchHHHHHHHHHHHhcC
Confidence 3689999999999987665 57899999999977544333 3333 24569999999999999988887653
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.06 E-value=0.0011 Score=68.46 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
+..+++.|.+|+..++...-++|+||+|+|||.+..- ++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999998877889999999999976433 33333321 2456999999999999998888765
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0015 Score=69.14 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
+..+++.|.+|+..++.+.-++|.||.|||||.+..- ++..+... .+.++|+++||...+.++.+.+.+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 4578999999999998877789999999999976433 33333321 23469999999999999999988763
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.75 E-value=0.0028 Score=67.09 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 133 FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 133 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
...+++.|.+|+..++.+.-++|.||.|+|||.+.. .++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 457899999999999888788999999999997643 334444321 2456999999999999998888765
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.64 E-value=0.0033 Score=65.22 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
..+++-|.+++.. ....++|.|+.|||||.+.+--+...+.... . ...++|++++|+..+.++.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-~---~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-C---SPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-C---CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-C---ChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4789999999973 3678999999999999775443333333211 1 22369999999999999999888763
No 101
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.60 E-value=0.0039 Score=63.50 Aligned_cols=63 Identities=22% Similarity=0.107 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
.+++.|.+++..++..+.+++.++.|+|||.+. ..++..+.. .+.++++++||...+..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES-------LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH-------TTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCeEEEecCcHHHHHHhHhh
Confidence 578999999999999999999999999999653 233333332 345699999999999887654
No 102
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.52 E-value=0.0043 Score=61.48 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=50.4
Q ss_pred CCCCCCCHHHHHHHHHHhc-----CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 131 QGFDRPTPIQAQGWPIAMS-----GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~-----g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
+.|..+++-|++++..++. ...+++.|+.|||||.+. ..++..+.... ...+++++||...+..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG------ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT------CCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC------CceEEEecCcHHHHHHHHhh
Confidence 3588999999999997753 238999999999999653 33444444321 13589999999988877654
Q ss_pred H
Q psy9620 206 A 206 (453)
Q Consensus 206 ~ 206 (453)
+
T Consensus 94 ~ 94 (459)
T 3upu_A 94 S 94 (459)
T ss_dssp H
T ss_pred h
Confidence 4
No 103
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.96 E-value=0.0084 Score=62.51 Aligned_cols=70 Identities=20% Similarity=0.115 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.+++-|.+++... ...++|.|+.|||||.+..--+...+..... ....+|+|+.|+..|.++.+.+.++.
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~----~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY----QARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC----CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 5789999999753 6789999999999997754444333333111 23459999999999999999988764
No 104
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.94 E-value=0.014 Score=61.33 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 134 DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 134 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..+++-|.+++.. ....++|.|..|||||.+..--+...+.... . ....+|+|+.|+..|.++.+.+.++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~---~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-V---APWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-C---CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-C---CHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4799999999875 3578999999999999775443333333211 1 2235999999999999998888775
No 105
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.47 E-value=0.021 Score=63.73 Aligned_cols=70 Identities=24% Similarity=0.215 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
.+|+-|.++|..- +++++|.|..|||||.+.+--++..+..... +-+.-++|+|++|+..|..+.+.+..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHH
Confidence 7899999998754 8899999999999998765445544443211 11233699999999999999887766
No 106
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.19 E-value=0.041 Score=57.96 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=64.6
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-CccCCCCCCCcEEEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-AARGLDVDDVKFVIN 374 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~GiDip~v~~VI~ 374 (453)
..+++|.++++.-|.++++.+... ++.+..+||+++..++..+++.+.+|..+|+|+|.. +...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 468999999999998888887654 789999999999999999999999999999999964 345677888888774
No 107
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.51 E-value=0.09 Score=50.98 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=64.1
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc----cCCCCCCCcE
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA----RGLDVDDVKF 371 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~----~GiDip~v~~ 371 (453)
...++||.+|++.-+.++++.+.. .++.+..+||+.+..++....+.+..++.+|+|+|.-.- .-++..++.+
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 467899999999999999999998 578999999999999999999999999999999997322 1255667787
Q ss_pred EEE
Q psy9620 372 VIN 374 (453)
Q Consensus 372 VI~ 374 (453)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 108
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=94.30 E-value=0.13 Score=49.16 Aligned_cols=70 Identities=14% Similarity=0.039 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
.++|+|...+..+...+-+++..+-+.|||.+....++..+... .+..+++++|+++.|..+.+.++.+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 78999999998775556789999999999987665555433331 35679999999999988887776654
No 109
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.05 E-value=0.16 Score=51.95 Aligned_cols=73 Identities=14% Similarity=0.023 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcCCC
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSST 213 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~~~ 213 (453)
.++|+|...+..+...+-+++..+-++|||.+....++..+... .+..+++++|+++.|..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 58999999998775567789999999999987655444444332 24579999999999999988888765443
No 110
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.25 E-value=0.43 Score=41.44 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=54.2
Q ss_pred CcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-C-----ccCCCCCCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-A-----ARGLDVDDV 369 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~~GiDip~v 369 (453)
.++||.|+++.-+.++++.+... +..+..++++.+..++.. .+..+..+|+|+|.- + ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999999888765 688999999988766543 345577899999962 1 234667788
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87774
No 111
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=92.26 E-value=0.38 Score=52.80 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=63.9
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc-c---CCCCCCCcE
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA-R---GLDVDDVKF 371 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~-~---GiDip~v~~ 371 (453)
...++||.+|++.-|.++++.|.. .++.+..+||+++..+|...++.+..+..+|||+|.-.- . -+++.++.+
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456899999999999999999998 467899999999999999999999999999999996321 1 145677888
Q ss_pred EEE
Q psy9620 372 VIN 374 (453)
Q Consensus 372 VI~ 374 (453)
||.
T Consensus 200 lVi 202 (1104)
T 4ddu_A 200 VFV 202 (1104)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 112
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.26 E-value=0.3 Score=53.93 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=63.5
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cCccCCCCCCCcEEE
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-VAARGLDVDDVKFVI 373 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~GiDip~v~~VI 373 (453)
..+++|.|+|+.-+.++++.+.+. ++.+..+++..+..++..+++.+..|..+|+|+|. .+...+.+.++.+||
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 458999999999999988888753 57899999999999999999999999999999995 455567788888777
No 113
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.05 E-value=0.21 Score=42.03 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHh---------cCCcEEEEecCCCcchhhh
Q psy9620 137 TPIQAQGWPIAM---------SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 137 ~~~Q~~~i~~i~---------~g~d~li~a~TGsGKT~~~ 167 (453)
.+.|.+++..+. .++.+++++|+|+|||...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 456666665543 4688999999999999654
No 114
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.15 E-value=1.1 Score=39.52 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCc-cCCCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAA-RGLDVDDV 369 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~GiDip~v 369 (453)
..++||.++++.-+.++++.+... ++.+..++|+.+..+....+.. ..+|+|+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 457999999999999888877653 7889999999887776555443 478999995 222 23577888
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87774
No 115
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.97 E-value=0.46 Score=47.63 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=55.6
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
.+++||.++++.-+.+..+.|...++.+..+|+..+..++..++..+..+..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46899999999999999999999999999999999999999999999999999999995
No 116
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.42 E-value=0.46 Score=48.39 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=54.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHH--hcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEF--RNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f--~~g~~~vLvaT~ 358 (453)
.+.+||.+|++.-+.+.++.|...++.+..++++++..++..++..+ ..+..+|||+|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 46899999999999999999999999999999999999999999988 578899999997
No 117
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.61 E-value=1.7 Score=38.61 Aligned_cols=71 Identities=15% Similarity=0.303 Sum_probs=53.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----Cc--cCCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----AA--RGLDVDD 368 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~--~GiDip~ 368 (453)
..++||.++++.-+.++++.+... ++.+..++++.+..++...+ ....+|+|+|.- +. ..+++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999999998887764 78899999998866554333 246899999952 11 3567778
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 887774
No 118
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.36 E-value=0.32 Score=47.25 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=32.7
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
-.++.|+.|||||... ...+.. ...+|++||++++..+.+.+.+.
T Consensus 163 v~~I~G~aGsGKTt~I----~~~~~~---------~~~lVlTpT~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI----LSRVNF---------EEDLILVPGRQAAEMIRRRANAS 207 (446)
T ss_dssp EEEEEECTTSCHHHHH----HHHCCT---------TTCEEEESCHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHH----HHHhcc---------CCeEEEeCCHHHHHHHHHHhhhc
Confidence 4578999999999643 222211 12699999999999988887643
No 119
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=88.92 E-value=1.8 Score=36.78 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=52.2
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----Cc-cCCCCCCCc
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----AA-RGLDVDDVK 370 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~-~GiDip~v~ 370 (453)
...++||.|+++.-+.++++.+... .+.+..++++.+..+....+. ...+|+|+|.- +. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999999999876 467888898877554433332 25789999952 22 246677788
Q ss_pred EEEE
Q psy9620 371 FVIN 374 (453)
Q Consensus 371 ~VI~ 374 (453)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 120
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.81 E-value=0.3 Score=39.42 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=16.9
Q ss_pred HhcCCcEEEEecCCCcchhh
Q psy9620 147 AMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~ 166 (453)
+....++++.+++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34678999999999999954
No 121
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=88.72 E-value=1.1 Score=39.17 Aligned_cols=72 Identities=11% Similarity=0.264 Sum_probs=48.5
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc------CccCCCCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV------AARGLDVDDV 369 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~GiDip~v 369 (453)
...++||.++++.-+.++++.+... ++.+..++++.+..++... +. ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3568999999999999999998874 6788888988765544332 22 34889999952 1234667788
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
.+||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87764
No 122
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=88.31 E-value=2.2 Score=40.41 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=54.9
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-C-----ccCCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-A-----ARGLDVDD 368 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~~GiDip~ 368 (453)
..++||.|+++.-+.++++.+... ++.+..++|+.+..+... .+..+..+|+|+|.- + ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999998888764 788999999988766544 345577899999952 1 23456778
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 887774
No 123
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=88.30 E-value=1.3 Score=38.87 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=46.0
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCcc-CCCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAAR-GLDVDD 368 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-GiDip~ 368 (453)
...++||.++++.-+.++++.+... +..+..++++.+..+ ..+.+..+..+|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3458999999999999999988764 567778888765332 33455667789999994 2333 356777
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887664
No 124
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.89 E-value=2.5 Score=35.89 Aligned_cols=71 Identities=13% Similarity=0.216 Sum_probs=51.4
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----Ccc-CCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----AAR-GLDVDD 368 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~-GiDip~ 368 (453)
..++||.|+++.-+.++++.+... +..+..++++.+..+....+ ....+|+|+|.- +.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 458999999999999998888754 57888899988765543222 356889999962 222 346677
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777664
No 125
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.78 E-value=0.33 Score=39.25 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=17.1
Q ss_pred hcCCcEEEEecCCCcchhhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~ 167 (453)
..+.++++.+|+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46789999999999999654
No 126
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=87.42 E-value=9.9 Score=33.39 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=50.5
Q ss_pred CcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-C-----ccCCCCCCCc
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-A-----ARGLDVDDVK 370 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~~GiDip~v~ 370 (453)
.++||.|+++.-+.++++.+... ++.+..++++.+..+....+ ....+|+|+|.- + ...+++..+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 58999999999999998887754 56788889887755443322 346889999962 1 1235777888
Q ss_pred EEEE
Q psy9620 371 FVIN 374 (453)
Q Consensus 371 ~VI~ 374 (453)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 127
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=87.00 E-value=2.5 Score=37.84 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=51.9
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCc--cCCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAA--RGLDVDD 368 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~GiDip~ 368 (453)
..++||.++++.-+.++++.+... +..+..++|+....+.... +..+ .+|+|+|. .+. ..+++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 567999999999999999988764 5677888998876554433 3333 89999994 121 2467788
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887764
No 128
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.07 E-value=2 Score=37.58 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=49.5
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-C----cc--CCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-A----AR--GLDVDD 368 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~----~~--GiDip~ 368 (453)
..++||.++++.-+.++++.+... ++.+..++|+.+..+....+ ...+|+|+|.- + .. .+++.+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 568999999999999999988865 47888999987655443322 46899999952 1 12 356677
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777664
No 129
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=84.62 E-value=1.8 Score=37.47 Aligned_cols=82 Identities=23% Similarity=0.239 Sum_probs=50.0
Q ss_pred HHHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC--
Q psy9620 288 LFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA-- 360 (453)
Q Consensus 288 l~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-- 360 (453)
+..++..+.. ....++||.++++.-+.++++.+... ++.+..++|+.+..+....+ . ..+|+|+|.-.
T Consensus 69 ~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv~Tp~~l~ 143 (224)
T 1qde_A 69 SIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVVGTPGRVF 143 (224)
T ss_dssp HHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEEECHHHHH
T ss_pred HHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEEECHHHHH
Confidence 3444444432 23458999999999999999888754 67888899987655443322 2 38899999621
Q ss_pred ----ccCCCCCCCcEEEE
Q psy9620 361 ----ARGLDVDDVKFVIN 374 (453)
Q Consensus 361 ----~~GiDip~v~~VI~ 374 (453)
...+++..+.+||.
T Consensus 144 ~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 144 DNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp HHHHTTSSCCTTCCEEEE
T ss_pred HHHHhCCcchhhCcEEEE
Confidence 23466777777764
No 130
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=84.37 E-value=3 Score=36.31 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=56.7
Q ss_pred HHHHHhhhc-CCCCcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC--
Q psy9620 289 FGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA-- 360 (453)
Q Consensus 289 ~~ll~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-- 360 (453)
+.++..+.. ....++||.|+++.-+.++++.+... ++.+..++|+.+..++...+ ...+|+|+|.-.
T Consensus 80 l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~ 154 (230)
T 2oxc_A 80 TIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIK 154 (230)
T ss_dssp HHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHH
T ss_pred HHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHH
Confidence 334444322 23468999999999999999988764 67889999998876654433 358999999731
Q ss_pred ----ccCCCCCCCcEEEE
Q psy9620 361 ----ARGLDVDDVKFVIN 374 (453)
Q Consensus 361 ----~~GiDip~v~~VI~ 374 (453)
...+++.++++||.
T Consensus 155 ~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 155 QLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp HHHHTTSSCGGGCCEEEE
T ss_pred HHHhcCCcccccCCEEEe
Confidence 13456667776664
No 131
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=83.45 E-value=0.99 Score=39.72 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=30.8
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.|.-+++.+++|+|||...+-.+...+. .+..++++.-. +...++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~--------~~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK--------MGEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH--------TTCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEcc-CCHHHHHHHHHHc
Confidence 5678899999999999764333332222 12336766533 3345665555544
No 132
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.65 E-value=0.8 Score=44.61 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=31.3
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQ 200 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~ 200 (453)
...++++.|+||||||... .+++..+.. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~-------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL-------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH-------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH-------CCCcEEEEeCCCchhH
Confidence 4578999999999999864 334433333 2456888889888864
No 133
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=82.28 E-value=3.2 Score=40.21 Aligned_cols=72 Identities=28% Similarity=0.389 Sum_probs=54.1
Q ss_pred CCCCcEEEEEcchhHHHHHHHHHHhc-CC---eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-Cc-----cCCCCC
Q psy9620 298 KDENKTIIFAETKRKVDKITKSIQNY-GW---AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-AA-----RGLDVD 367 (453)
Q Consensus 298 ~~~~~~lVF~~s~~~~~~l~~~L~~~-~~---~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~-----~GiDip 367 (453)
....++||.|+++.-+..+++.+.+. +. .+..+||+....++..... ..+|+|+|.- +. .-+...
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~ 124 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLE 124 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchh
Confidence 34679999999999999999998875 55 8999999998887655443 4689999952 22 235667
Q ss_pred CCcEEEE
Q psy9620 368 DVKFVIN 374 (453)
Q Consensus 368 ~v~~VI~ 374 (453)
++++||.
T Consensus 125 ~~~~vIi 131 (494)
T 1wp9_A 125 DVSLIVF 131 (494)
T ss_dssp SCSEEEE
T ss_pred hceEEEE
Confidence 7777764
No 134
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.03 E-value=0.75 Score=41.41 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=17.2
Q ss_pred HhcCCcEEEEecCCCcchhhh
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~ 167 (453)
+..|.-+++++|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 446778899999999999653
No 135
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=81.86 E-value=1.4 Score=38.04 Aligned_cols=33 Identities=24% Similarity=0.155 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
.-+.-|..++..+..|.-+.+.+|+|||||+..
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 334457778888888999999999999999654
No 136
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=81.06 E-value=2.3 Score=36.15 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=15.1
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
+.+++++|+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999654
No 137
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=80.80 E-value=1.7 Score=41.09 Aligned_cols=19 Identities=47% Similarity=0.576 Sum_probs=16.1
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
....+++.+|+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999754
No 138
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=80.67 E-value=22 Score=29.32 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=55.1
Q ss_pred hhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCccCC
Q psy9620 285 ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGL 364 (453)
Q Consensus 285 ~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 364 (453)
...+.+.+.. .......+-|.|.+..++..+.+.|...++++..+..+.. .-...|.|.|--.+.|+
T Consensus 47 ~~~i~~~I~~-~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGl 113 (174)
T 3dmn_A 47 VDQVVDQLAM-NDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGL 113 (174)
T ss_dssp HHHHHHHHHH-HHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTC
T ss_pred HHHHHHHHHH-hccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCc
Confidence 3444444444 2223567899999999999999999999998877765431 12347999999999999
Q ss_pred CCCCCcEEEEcCC
Q psy9620 365 DVDDVKFVINFDY 377 (453)
Q Consensus 365 Dip~v~~VI~~d~ 377 (453)
.+ +.||.+++
T Consensus 114 Ef---~~V~~~~~ 123 (174)
T 3dmn_A 114 EF---DAVIVWNA 123 (174)
T ss_dssp CE---EEEEEETC
T ss_pred CC---CEEEEecC
Confidence 87 55565554
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=80.39 E-value=1.6 Score=43.47 Aligned_cols=39 Identities=18% Similarity=0.058 Sum_probs=26.1
Q ss_pred HHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhh
Q psy9620 126 KEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 126 ~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~ 166 (453)
..+.+.|. +++.+..-+.. +..+..+++++|||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34445442 44545444443 45788999999999999964
No 140
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.98 E-value=0.65 Score=45.12 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=35.0
Q ss_pred CCccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhh
Q psy9620 109 PNPITEFAEANFPDYVLKEVKRQ---GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 109 p~p~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~ 166 (453)
..|-.+|++.+-.+...+.|.+. -+..|.-++...+ ...+.+|+.+|+|+|||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 35667899998777777777643 1112222222211 1246899999999999964
No 141
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=79.96 E-value=1.3 Score=37.64 Aligned_cols=39 Identities=21% Similarity=0.094 Sum_probs=25.9
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR 196 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr 196 (453)
|+=.+++++.|+|||.+.+-.+ .+... .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a-~r~~~-------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRI-RRAKI-------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH-HHHHH-------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHH-HHHHH-------CCCEEEEEEecc
Confidence 4556889999999997654333 33322 345699998873
No 142
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=79.26 E-value=1.4 Score=38.52 Aligned_cols=40 Identities=18% Similarity=0.056 Sum_probs=26.2
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR 196 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr 196 (453)
.|.-+++++++|+|||.+.+-.+ ..+.. .+.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~-~r~~~-------~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRL-HRLEY-------ADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHH-HHHHH-------TTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHH-HHHHh-------cCCEEEEEEecc
Confidence 35567889999999997654433 33332 244588887764
No 143
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=78.68 E-value=1.5 Score=37.07 Aligned_cols=39 Identities=23% Similarity=0.088 Sum_probs=25.4
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR 196 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr 196 (453)
++-.+++++.|+|||...+--+. .+.. .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~-~~~~-------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVE-IYKL-------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH-HHHH-------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-HHHH-------CCCeEEEEeecc
Confidence 55578999999999976533332 2222 244688888873
No 144
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=78.59 E-value=2.7 Score=38.75 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=16.2
Q ss_pred CCcEEEEecCCCcchhhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~ 168 (453)
++++++.+|+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999996543
No 145
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=78.49 E-value=7.8 Score=36.83 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=51.2
Q ss_pred CcEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----Cc-cCCCCCCCc
Q psy9620 301 NKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----AA-RGLDVDDVK 370 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~-~GiDip~v~ 370 (453)
.++||.++++.-+.++++.+.. .++.+..++|+.+..+.... + ....+|+|+|.- +. ..+++.++.
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD---L-ERGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH---H-TTCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH---h-hCCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4799999999999999988875 36788899999887654332 2 235789999962 11 235677788
Q ss_pred EEEE
Q psy9620 371 FVIN 374 (453)
Q Consensus 371 ~VI~ 374 (453)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 146
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=78.29 E-value=3.7 Score=44.82 Aligned_cols=74 Identities=18% Similarity=0.317 Sum_probs=57.4
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc----CC----eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-CccCCC-CCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY----GW----AAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-AARGLD-VDD 368 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~----~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~GiD-ip~ 368 (453)
...++||.++++.-|.++++.+... ++ .+..+||+.+..++....+.++. .+|+|+|+- +..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3568999999999999998888753 55 78999999999988888888777 999999962 222122 557
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777764
No 147
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.05 E-value=0.91 Score=41.14 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=31.6
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhcCCcEEEEecCCCcchhhh
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPI--AMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~g~d~li~a~TGsGKT~~~ 167 (453)
|-.+|+++.-.+..++.+.+. ...+. ...+.+.. +...+.+++.+|+|+|||...
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~-~~~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREV-VELPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH-THHHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHH-HHHHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 445678877666666666543 10000 00111111 134678999999999999654
No 148
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=78.04 E-value=3.2 Score=40.91 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=38.5
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhcC
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGS 211 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~~ 211 (453)
.+....+.+-|||+||++. +.+.. .. +..+|||+|+..+|.|+++.++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~--a~l~~--~~-------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLV--AEIAE--RH-------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHH--HHHHH--HS-------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHH--HHHHH--Hh-------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 4566789999999999642 22221 11 12389999999999999999999864
No 149
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=78.03 E-value=2.8 Score=41.81 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=50.5
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-C----ccC-C-CCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-A----ARG-L-DVDD 368 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~----~~G-i-Dip~ 368 (453)
..++||+|+++.-+.++++.+... ++.+..+||+.+..++...+. ...+|+|+|.- + ..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 668999999999998888887765 889999999986554432222 14789999962 1 122 3 5666
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 150
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=77.75 E-value=1.8 Score=40.81 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.0
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.+..+++++|||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455788999999999965
No 151
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=77.70 E-value=8.9 Score=36.23 Aligned_cols=71 Identities=18% Similarity=0.242 Sum_probs=51.5
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----Cc-cCCCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----AA-RGLDVDDV 369 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~-~GiDip~v 369 (453)
..++||.|+++.-+.++++.+... ++.+..++++....+.... .....+|+|+|.- +. ...++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 458999999999999998888764 6788889998776543222 2467899999952 22 33567778
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
.+||.
T Consensus 165 ~~vIi 169 (400)
T 1s2m_A 165 SLFIM 169 (400)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87774
No 152
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=77.60 E-value=4.5 Score=37.01 Aligned_cols=80 Identities=10% Similarity=0.111 Sum_probs=52.9
Q ss_pred HHHHHHhhhcC-CCCcEEEEEcchhHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC-
Q psy9620 288 LFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA- 360 (453)
Q Consensus 288 l~~ll~~~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~- 360 (453)
++.++..+... ...++||.++++.-|.++++.+... ++.+..++++....... ....+|||+|.-.
T Consensus 149 ~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l 221 (300)
T 3fmo_B 149 VLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTV 221 (300)
T ss_dssp HHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHH
T ss_pred HHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHH
Confidence 33445444332 2347999999999999998888764 46677777765432211 3457899999632
Q ss_pred -----c-cCCCCCCCcEEEE
Q psy9620 361 -----A-RGLDVDDVKFVIN 374 (453)
Q Consensus 361 -----~-~GiDip~v~~VI~ 374 (453)
. ..+++.++.+||.
T Consensus 222 ~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 222 LDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp HHHHTTTCCCCGGGCSEEEE
T ss_pred HHHHHhcCCCChhhceEEEE
Confidence 1 3577888888775
No 153
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=77.24 E-value=3.7 Score=40.92 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=48.3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC-----ccC-C-CCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA-----ARG-L-DVDD 368 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-----~~G-i-Dip~ 368 (453)
..++||.|+++.-+..+++.+... ++.+..+||+.+..++...+.. ..+|+|+|.-. ..+ + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999999888888765 8999999999866554332221 37899999632 222 3 5777
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 887774
No 154
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=76.84 E-value=1.5 Score=38.53 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=30.5
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
.|.-+++.|++|+|||...+-.+...+... +..+++++-. +-..++.+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHHHc
Confidence 466789999999999955433233323221 2236666533 3355655555544
No 155
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=76.79 E-value=5.1 Score=42.29 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=48.1
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----CccC-C-CCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----AARG-L-DVDD 368 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-i-Dip~ 368 (453)
..++||.|+++.-+..+++.+... ++.+..+||+.+...+...+. ...+|+|+|.- +..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999999888887765 899999999987655433222 25789999952 1222 3 5666
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 156
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.73 E-value=8.3 Score=35.74 Aligned_cols=79 Identities=23% Similarity=0.306 Sum_probs=54.5
Q ss_pred HHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC------
Q psy9620 291 LLNDISSKDENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA------ 360 (453)
Q Consensus 291 ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------ 360 (453)
++..+......++||.|+++.-++++++.+... ++.+..++++....+....+. ..+|+|+|.-.
T Consensus 65 ~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~ 139 (367)
T 1hv8_A 65 LIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHIN 139 (367)
T ss_dssp HHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHH
T ss_pred HHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHH
Confidence 333333334568999999999999999888763 677888999887665443332 57899999521
Q ss_pred ccCCCCCCCcEEEE
Q psy9620 361 ARGLDVDDVKFVIN 374 (453)
Q Consensus 361 ~~GiDip~v~~VI~ 374 (453)
...+++.++++||.
T Consensus 140 ~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 140 RGTLNLKNVKYFIL 153 (367)
T ss_dssp TTCSCTTSCCEEEE
T ss_pred cCCcccccCCEEEE
Confidence 12355677777664
No 157
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=75.99 E-value=2.3 Score=42.16 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCcchhh
Q psy9620 138 PIQAQGWPIAMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 138 ~~Q~~~i~~i~~g~d~li~a~TGsGKT~~ 166 (453)
..-..++..+..+.++++.+|+|+|||..
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 33344555666889999999999999964
No 158
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=75.81 E-value=11 Score=35.67 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=52.2
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCcc-CCCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAAR-GLDVDD 368 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-GiDip~ 368 (453)
...++||.|+++.-+.++++.+... ++.+..++++....+....+. ...+|+|+|. .+.. .++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 3568999999999999999988764 567888899888766544333 2468999995 2223 356667
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 777663
No 159
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=75.80 E-value=1.6 Score=41.23 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=18.1
Q ss_pred HHHHHhcCCc--EEEEecCCCcchhh
Q psy9620 143 GWPIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 143 ~i~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
.+..+++|.| +++.++||||||.+
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 4455677876 56678999999965
No 160
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=75.45 E-value=2.8 Score=38.18 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
...++++.+|+|+|||...
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999654
No 161
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=75.41 E-value=1.2 Score=36.08 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.4
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.++.+++++|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999643
No 162
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=75.26 E-value=3 Score=36.68 Aligned_cols=84 Identities=17% Similarity=0.280 Sum_probs=52.8
Q ss_pred HHHHHHhhhc--CCCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc--
Q psy9620 288 LFGLLNDISS--KDENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-- 359 (453)
Q Consensus 288 l~~ll~~~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-- 359 (453)
++.++..+.. ....++||.++++.-+.++++.+... ++.+..++++.... ...........+|+|+|.-
T Consensus 84 ~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l 160 (245)
T 3dkp_A 84 SIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRL 160 (245)
T ss_dssp HHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHH
T ss_pred HHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHH
Confidence 3444444432 23447999999999999999998875 56666666542211 1112223467789999942
Q ss_pred ---Ccc---CCCCCCCcEEEE
Q psy9620 360 ---AAR---GLDVDDVKFVIN 374 (453)
Q Consensus 360 ---~~~---GiDip~v~~VI~ 374 (453)
+.. .+++.++.+||.
T Consensus 161 ~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 161 IYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp HHHHHSSSCSCCCTTCCEEEE
T ss_pred HHHHHhCCCCcccccCcEEEE
Confidence 112 477888887774
No 163
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=75.02 E-value=1.6 Score=41.41 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=17.4
Q ss_pred HhcCCcEEEEecCCCcchhh
Q psy9620 147 AMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~ 166 (453)
+..|..+++++|||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44789999999999999964
No 164
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=74.93 E-value=1.8 Score=38.74 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=16.3
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
....+++++++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 5678999999999999643
No 165
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=74.85 E-value=4.3 Score=33.40 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.3
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
...+++++|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999654
No 166
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=74.66 E-value=3.4 Score=37.78 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=30.4
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEEecCCCcchhhh
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPI-AMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~ 167 (453)
|-.+|+++.-.+.+.+.+.+. ...|.......... +..++.+++.+|+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~-v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQEL-VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH-HHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 345677776566666665542 00000000000011 224678999999999999654
No 167
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=74.54 E-value=2.6 Score=43.12 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHhc--CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 135 RPTPIQAQGWPIAMS--GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
.+|..|++++..++. ....+++|+-|.|||.+.-+.+ ..+.. .++|.+|+.+-+..+.+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~~----------~~~vtAP~~~a~~~l~~~ 236 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIAG----------RAIVTAPAKASTDVLAQF 236 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSSS----------CEEEECSSCCSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHHh----------CcEEECCCHHHHHHHHHH
Confidence 689999999988875 3347899999999995433322 22211 269999999977765554
No 168
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=74.42 E-value=4.7 Score=36.18 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=30.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHH-HHHHhcCC-----cEEEEecCCCcchhhhh
Q psy9620 122 DYVLKEVKRQGFDRPTPIQAQG-WPIAMSGS-----NMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 122 ~~l~~~l~~~g~~~~~~~Q~~~-i~~i~~g~-----d~li~a~TGsGKT~~~~ 168 (453)
..+.+.|+.+|+. +++... +..+++++ .+++.+|.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4677888877764 555333 44455543 48899999999997654
No 169
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.77 E-value=2.9 Score=36.00 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=28.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcC----CcEEEEecCCCcchhhh
Q psy9620 122 DYVLKEVKRQGFDRPTPIQAQGWPIAMSG----SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 122 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g----~d~li~a~TGsGKT~~~ 167 (453)
..|.+-|+-+++ .+..+ ..++..++.+ +.+++.+|.|+|||..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 456666766654 34344 4445555543 35889999999999654
No 170
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=73.68 E-value=8.6 Score=36.14 Aligned_cols=82 Identities=22% Similarity=0.238 Sum_probs=56.1
Q ss_pred HHHHHHhhhcC-CCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC--
Q psy9620 288 LFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA-- 360 (453)
Q Consensus 288 l~~ll~~~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-- 360 (453)
+..++..+... ...++||.|+++.-+.++++.+... ++.+..++++.+..+....+. ..+|+|+|.-.
T Consensus 76 ~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~ 150 (394)
T 1fuu_A 76 SIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVF 150 (394)
T ss_dssp HHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHH
T ss_pred HHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHH
Confidence 33344443322 3558999999999999998887753 678899999988776655443 46899999521
Q ss_pred ----ccCCCCCCCcEEEE
Q psy9620 361 ----ARGLDVDDVKFVIN 374 (453)
Q Consensus 361 ----~~GiDip~v~~VI~ 374 (453)
...+++.++.+||.
T Consensus 151 ~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 151 DNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp HHHHTTSSCCTTCCEEEE
T ss_pred HHHHhCCcchhhCcEEEE
Confidence 12355667777664
No 171
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=73.61 E-value=1.5 Score=36.80 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=15.7
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.|+-+++++|+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999643
No 172
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=73.47 E-value=5.5 Score=38.52 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=52.4
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----Ccc-CCCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----AAR-GLDVDDV 369 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~-GiDip~v 369 (453)
..++||.+++++-|.++++.+... ++.+..++|+.+..++...+ ....+|+|+|.- +.+ -+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 458999999999999999988764 46788899998876554332 246899999952 222 3567788
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
++||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 87774
No 173
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=73.43 E-value=2.2 Score=41.24 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=19.3
Q ss_pred HHHHHHHHHh--cCCcEEEEecCCCcchhh
Q psy9620 139 IQAQGWPIAM--SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 139 ~Q~~~i~~i~--~g~d~li~a~TGsGKT~~ 166 (453)
-+..++..++ .+.-+++++|||||||..
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3444554444 345678999999999964
No 174
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=73.04 E-value=14 Score=35.03 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=52.4
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCc-cCCCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAA-RGLDVDD 368 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~GiDip~ 368 (453)
...++||.++++.-+.++++.+... +..+..++++...... .+.+..+..+|+|+|. .+. ..++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 3568999999999999999888764 5677777887654433 4556668899999995 222 2355666
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+.+||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777663
No 175
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=72.89 E-value=4.9 Score=37.11 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=30.5
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-----cCCcEEEEecCCCcchhhh
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAM-----SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-----~g~d~li~a~TGsGKT~~~ 167 (453)
|-.+|+++.-.+.+++.+.+.=. .|.. .|.+. ..+.+|+.+|+|+|||..+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34568887766777776654310 0100 11111 2357999999999999654
No 176
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=72.80 E-value=3.2 Score=39.60 Aligned_cols=42 Identities=26% Similarity=0.454 Sum_probs=28.6
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
.+.+++++++||+|||......+... .. .+.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~-------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YM-------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HT-------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HH-------CCCEEEEEeCCcCH
Confidence 56789999999999996543333322 22 34568888887664
No 177
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=72.80 E-value=2.8 Score=34.74 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=15.2
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
...+++++|+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999653
No 178
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=71.98 E-value=2.2 Score=39.64 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=17.7
Q ss_pred HHHHhcCCc--EEEEecCCCcchhhh
Q psy9620 144 WPIAMSGSN--MVGVAQTGSGKTLAY 167 (453)
Q Consensus 144 i~~i~~g~d--~li~a~TGsGKT~~~ 167 (453)
+..+++|.| ++..++||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344567877 567799999999663
No 179
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=71.77 E-value=4 Score=35.13 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=48.4
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc--------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCcc-CCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY--------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAAR-GLD 365 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-GiD 365 (453)
..++||.|+++.-+.++++.+... ++.+..++|+.+..+... .+ ....+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999999998887653 577888898875433211 11 23678999995 2222 356
Q ss_pred CCCCcEEEE
Q psy9620 366 VDDVKFVIN 374 (453)
Q Consensus 366 ip~v~~VI~ 374 (453)
+..+.+||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 667777664
No 180
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=71.69 E-value=2 Score=40.25 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=17.2
Q ss_pred HHHHhcCCc--EEEEecCCCcchhh
Q psy9620 144 WPIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 144 i~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
+..+++|.| ++..++||||||.+
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeE
Confidence 334567876 46778999999976
No 181
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=71.68 E-value=1.6 Score=40.67 Aligned_cols=20 Identities=40% Similarity=0.471 Sum_probs=17.2
Q ss_pred HhcCCcEEEEecCCCcchhh
Q psy9620 147 AMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~ 166 (453)
+..|+.+++++|||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 44789999999999999963
No 182
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=71.45 E-value=2.3 Score=40.25 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=17.1
Q ss_pred HHHHhcCCc--EEEEecCCCcchhh
Q psy9620 144 WPIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 144 i~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
+..+++|.| +++.++||||||.+
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEe
Confidence 334567876 46678999999965
No 183
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=71.02 E-value=3.9 Score=35.39 Aligned_cols=40 Identities=18% Similarity=0.038 Sum_probs=25.8
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~ 197 (453)
|+=.+++++-|+|||...+--+..... .+.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~--------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF--------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH--------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH--------CCCEEEEEEeccC
Confidence 444568899999999775444433332 3456999998754
No 184
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=70.97 E-value=2.5 Score=39.85 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=17.9
Q ss_pred HHHHHhcCCc--EEEEecCCCcchhh
Q psy9620 143 GWPIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 143 ~i~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
.+..+++|.| ++..++||||||.+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 3445667887 46678999999965
No 185
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=70.87 E-value=2.5 Score=39.68 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=17.8
Q ss_pred HHHHhcCCc--EEEEecCCCcchhhh
Q psy9620 144 WPIAMSGSN--MVGVAQTGSGKTLAY 167 (453)
Q Consensus 144 i~~i~~g~d--~li~a~TGsGKT~~~ 167 (453)
+..+++|.| ++..++||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 445567876 566799999999663
No 186
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.70 E-value=2 Score=41.15 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=32.1
Q ss_pred ccccccccCCCHHHHHHHHHC-C--CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 111 PITEFAEANFPDYVLKEVKRQ-G--FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~-g--~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
|-.+|++.+=-+...+.|++. - +..|.-++... +..-+.+|+.+|+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 456888887566666666543 1 11111111111 113478999999999999653
No 187
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=70.67 E-value=2.5 Score=39.73 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=18.3
Q ss_pred HHHHHhcCCc--EEEEecCCCcchhhh
Q psy9620 143 GWPIAMSGSN--MVGVAQTGSGKTLAY 167 (453)
Q Consensus 143 ~i~~i~~g~d--~li~a~TGsGKT~~~ 167 (453)
.+..+++|.| ++..++||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3445667887 466799999999663
No 188
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=70.47 E-value=2.4 Score=39.80 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=16.7
Q ss_pred HHHhcCCc--EEEEecCCCcchhh
Q psy9620 145 PIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 145 ~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
..+++|.| ++..++||||||.+
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEE
Confidence 34567876 56678999999965
No 189
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=70.29 E-value=2.4 Score=39.96 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=17.2
Q ss_pred HHHHhcCCc--EEEEecCCCcchhh
Q psy9620 144 WPIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 144 i~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
+..++.|.| +++.++||||||.+
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceE
Confidence 344567876 56679999999965
No 190
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=70.29 E-value=2.4 Score=39.75 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=17.5
Q ss_pred HHHHhcCCc--EEEEecCCCcchhhh
Q psy9620 144 WPIAMSGSN--MVGVAQTGSGKTLAY 167 (453)
Q Consensus 144 i~~i~~g~d--~li~a~TGsGKT~~~ 167 (453)
+..+++|.| ++..++||||||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 344567876 466789999999663
No 191
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=70.24 E-value=2.5 Score=39.99 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=17.3
Q ss_pred HHHHhcCCc--EEEEecCCCcchhh
Q psy9620 144 WPIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 144 i~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
+..+++|.| ++..++||||||.+
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceE
Confidence 345567876 56678999999965
No 192
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=70.21 E-value=2.5 Score=40.00 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=16.8
Q ss_pred HHHhcCCc--EEEEecCCCcchhh
Q psy9620 145 PIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 145 ~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
..+++|.| ++..++||||||.+
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceE
Confidence 34567876 56679999999966
No 193
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=70.21 E-value=2.5 Score=39.35 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=19.7
Q ss_pred HHHHHHhcCCc--EEEEecCCCcchhhh
Q psy9620 142 QGWPIAMSGSN--MVGVAQTGSGKTLAY 167 (453)
Q Consensus 142 ~~i~~i~~g~d--~li~a~TGsGKT~~~ 167 (453)
..+..+++|.| ++..++||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 45666778887 566799999999653
No 194
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=70.06 E-value=3.2 Score=35.82 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=16.3
Q ss_pred cCCcEEEEecCCCcchhhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~ 168 (453)
.|.-+++.+|+|+|||....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56778899999999996543
No 195
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=69.90 E-value=1.7 Score=40.38 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=18.7
Q ss_pred HHHhcCCcEEEEecCCCcchhhh
Q psy9620 145 PIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 145 ~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
..+..+.++++.+|+|+|||...
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34456889999999999999653
No 196
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=69.87 E-value=2.5 Score=39.83 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=16.7
Q ss_pred HHHhcCCc--EEEEecCCCcchhh
Q psy9620 145 PIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 145 ~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
..+++|.| ++..++||||||.+
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceE
Confidence 34567876 56679999999965
No 197
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=69.80 E-value=2.1 Score=36.52 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=14.9
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.++-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999654
No 198
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=69.70 E-value=2.5 Score=39.80 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=17.1
Q ss_pred HHHHhcCCc--EEEEecCCCcchhh
Q psy9620 144 WPIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 144 i~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
+..+++|.| ++..++||||||.+
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceee
Confidence 344567876 56678999999965
No 199
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=69.70 E-value=2 Score=37.39 Aligned_cols=19 Identities=16% Similarity=0.017 Sum_probs=16.1
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.++.+++++|+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3678999999999999654
No 200
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=69.63 E-value=2.6 Score=40.47 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=16.7
Q ss_pred HHHhcCCc--EEEEecCCCcchhh
Q psy9620 145 PIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 145 ~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
..+++|.| +++.++||||||.+
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeE
Confidence 34567876 56779999999966
No 201
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=69.29 E-value=2.4 Score=39.86 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=19.4
Q ss_pred HHHHHhcCCcE--EEEecCCCcchhhh
Q psy9620 143 GWPIAMSGSNM--VGVAQTGSGKTLAY 167 (453)
Q Consensus 143 ~i~~i~~g~d~--li~a~TGsGKT~~~ 167 (453)
.+..+++|.|+ ++.++||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 56667788874 66789999999664
No 202
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.24 E-value=1.6 Score=42.49 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=33.3
Q ss_pred CccccccccCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 110 NPITEFAEANFPDYVLKEVKRQG---FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 110 ~p~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
.|-.+|++.+--+.+.+.|++.= +..|.-++... +..-+.+|+.+|+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 34568889877777777776531 11111111110 123578999999999999653
No 203
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=69.24 E-value=2 Score=36.84 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.3
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.++-+++.+|||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3566899999999998543
No 204
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=69.17 E-value=2.6 Score=39.56 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=19.1
Q ss_pred HHHHHhcCCc--EEEEecCCCcchhhh
Q psy9620 143 GWPIAMSGSN--MVGVAQTGSGKTLAY 167 (453)
Q Consensus 143 ~i~~i~~g~d--~li~a~TGsGKT~~~ 167 (453)
.+..+++|.| ++..++||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5556678887 466789999999663
No 205
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=69.06 E-value=2.5 Score=40.04 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=16.6
Q ss_pred HHHhcCCc--EEEEecCCCcchhh
Q psy9620 145 PIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 145 ~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
..+++|.| ++..++||||||.+
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCceEEEEeecCCCCCccee
Confidence 34567876 56678999999965
No 206
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=69.02 E-value=2.6 Score=38.79 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=16.3
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
...++++++++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999653
No 207
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=68.84 E-value=2 Score=40.11 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.2
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
+-++|++|||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45789999999999654
No 208
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=68.59 E-value=2.2 Score=39.02 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.2
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+.++++++|+|+|||..+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 347999999999999764
No 209
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=68.54 E-value=4.8 Score=37.10 Aligned_cols=53 Identities=11% Similarity=-0.083 Sum_probs=31.4
Q ss_pred hcCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..|.-+++.|++|+|||...+-.+...... +..+++++-. +-..|+...+...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~--------g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN--------DDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT--------TCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--------CCeEEEEECC-CCHHHHHHHHHHH
Confidence 356778999999999995443333332221 2357777644 4455555555443
No 210
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=68.42 E-value=2.3 Score=36.54 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.6
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.|+-+++++|+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667889999999999653
No 211
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=68.34 E-value=2.6 Score=40.11 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=17.3
Q ss_pred HHHhcCCc--EEEEecCCCcchhhh
Q psy9620 145 PIAMSGSN--MVGVAQTGSGKTLAY 167 (453)
Q Consensus 145 ~~i~~g~d--~li~a~TGsGKT~~~ 167 (453)
..+++|.+ +++.++||||||.+.
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHhcCCceEEEEecCCCCCCCeEe
Confidence 34567876 567789999999763
No 212
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=68.31 E-value=5.8 Score=29.85 Aligned_cols=37 Identities=11% Similarity=0.237 Sum_probs=32.5
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 335 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~ 335 (453)
+..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3568999999988899999999999999999998754
No 213
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=68.11 E-value=2.4 Score=36.09 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=16.7
Q ss_pred cCCcEEEEecCCCcchhhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~ 168 (453)
.++.+++++++|||||...-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56789999999999997643
No 214
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=67.96 E-value=7.6 Score=35.85 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=29.7
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-----cCCcEEEEecCCCcchhhh
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAM-----SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-----~g~d~li~a~TGsGKT~~~ 167 (453)
|-.+|+++.-.+.+.+.+++.= ..|.+ .|.++ ..+.+++.+|+|+|||+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v---~~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAV---ILPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH---HHHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHH---HHHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 3457888776666666665420 00000 01111 2367999999999999654
No 215
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=67.84 E-value=3 Score=40.05 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=19.0
Q ss_pred HHHHHhcCCcE--EEEecCCCcchhhh
Q psy9620 143 GWPIAMSGSNM--VGVAQTGSGKTLAY 167 (453)
Q Consensus 143 ~i~~i~~g~d~--li~a~TGsGKT~~~ 167 (453)
.+..+++|.|+ +..++||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 45566788874 66789999999763
No 216
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.73 E-value=1.7 Score=42.24 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=30.1
Q ss_pred ccccccccCCCHHHHHHHHHC-C--CCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 111 PITEFAEANFPDYVLKEVKRQ-G--FDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~-g--~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
|-.+|++.+--+...+.|++. - +..|.-++... +.--+-+|+.+|+|+|||+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 445788876555555555543 0 11111111111 112478999999999999653
No 217
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=67.39 E-value=2.7 Score=39.72 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=18.7
Q ss_pred HHHHHhcCCc--EEEEecCCCcchhhh
Q psy9620 143 GWPIAMSGSN--MVGVAQTGSGKTLAY 167 (453)
Q Consensus 143 ~i~~i~~g~d--~li~a~TGsGKT~~~ 167 (453)
.+..+++|.| ++..++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556678887 456799999999663
No 218
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=67.31 E-value=4.8 Score=48.12 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHCCCCCCCHHH-HHHH---HHHhcCCcEEEEecCCCcchhhhhH
Q psy9620 120 FPDYVLKEVKRQGFDRPTPIQ-AQGW---PIAMSGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 120 l~~~l~~~l~~~g~~~~~~~Q-~~~i---~~i~~g~d~li~a~TGsGKT~~~~l 169 (453)
+.+.+.+.+.+.++ .+++.+ .+++ ..+...+.++++||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 33456666777777 556654 2222 3344678899999999999988654
No 219
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=66.99 E-value=3.1 Score=40.42 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=17.6
Q ss_pred HHHHhcCCc--EEEEecCCCcchhhh
Q psy9620 144 WPIAMSGSN--MVGVAQTGSGKTLAY 167 (453)
Q Consensus 144 i~~i~~g~d--~li~a~TGsGKT~~~ 167 (453)
+..+++|.| ++..++||||||.+.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 334567876 566789999999663
No 220
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=66.95 E-value=4.8 Score=36.80 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=15.9
Q ss_pred CCcEEEEecCCCcchhhhhH
Q psy9620 150 GSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l 169 (453)
++-+++++++|+|||.....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 55688999999999976543
No 221
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=66.92 E-value=8.3 Score=36.39 Aligned_cols=18 Identities=50% Similarity=0.610 Sum_probs=15.6
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
..++++++|+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 568999999999999654
No 222
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=66.92 E-value=2.3 Score=39.13 Aligned_cols=16 Identities=31% Similarity=0.266 Sum_probs=13.2
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-+++++|||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678999999999654
No 223
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=66.91 E-value=2.3 Score=39.22 Aligned_cols=16 Identities=31% Similarity=0.185 Sum_probs=13.3
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-++|++|||+|||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4678999999999654
No 224
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=66.84 E-value=3.2 Score=39.39 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=18.3
Q ss_pred HHHHHhcCCc--EEEEecCCCcchhh
Q psy9620 143 GWPIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 143 ~i~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
.+..+++|.| +++.++||||||.+
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 4556678877 46678999999965
No 225
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=66.64 E-value=2.6 Score=40.15 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=16.7
Q ss_pred HHhcCCc--EEEEecCCCcchhhh
Q psy9620 146 IAMSGSN--MVGVAQTGSGKTLAY 167 (453)
Q Consensus 146 ~i~~g~d--~li~a~TGsGKT~~~ 167 (453)
.+++|.| ++..++||||||.+.
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 4567876 566799999999663
No 226
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=66.55 E-value=3.1 Score=39.95 Aligned_cols=26 Identities=38% Similarity=0.450 Sum_probs=19.4
Q ss_pred HHHHHHhcCCc--EEEEecCCCcchhhh
Q psy9620 142 QGWPIAMSGSN--MVGVAQTGSGKTLAY 167 (453)
Q Consensus 142 ~~i~~i~~g~d--~li~a~TGsGKT~~~ 167 (453)
..+..++.|.| ++..++||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35566778887 466789999999663
No 227
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=66.10 E-value=2.6 Score=35.96 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=15.8
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.++-+++++|+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 677889999999999964
No 228
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=65.64 E-value=2.4 Score=35.21 Aligned_cols=21 Identities=29% Similarity=0.200 Sum_probs=17.1
Q ss_pred hcCCcEEEEecCCCcchhhhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~ 168 (453)
...+.++++++.|||||....
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999997543
No 229
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=65.51 E-value=3.7 Score=38.21 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHh----cCC---cEEEEecCCCcchhhhhH
Q psy9620 136 PTPIQAQGWPIAM----SGS---NMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 136 ~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~l 169 (453)
+.|+|.+++..+. +++ .+++.||.|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 4688888876654 343 489999999999976543
No 230
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=65.16 E-value=2 Score=38.11 Aligned_cols=54 Identities=17% Similarity=0.052 Sum_probs=29.5
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh--cCCcEEEEecCCCcchhhh
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAM--SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~ 167 (453)
|-.+|+++.-.+.....+++.-.. . -...++..+- -.+.+++.+|+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~-~--~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF-L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH-H--HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-H--HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 445777776666665555543110 0 0012222221 1244899999999999643
No 231
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=64.90 E-value=2 Score=39.73 Aligned_cols=20 Identities=10% Similarity=-0.175 Sum_probs=16.4
Q ss_pred cCCcEEEEecCCCcchhhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~ 168 (453)
.+.++++.+|+|+|||.+.-
T Consensus 44 ~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999997643
No 232
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=64.79 E-value=7.8 Score=41.70 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=46.7
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-C----ccC-C-CCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-A----ARG-L-DVDD 368 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~----~~G-i-Dip~ 368 (453)
..++||.++++.-+..++..+... ++.+..+||+.+...+...+.. ..+|+|+|.- + ..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH----HCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc----CCCEEEecHHHHHHHHHcCccccccC
Confidence 568999999999998888887764 8999999999865553322221 4789999952 1 122 3 4556
Q ss_pred CcEEEE
Q psy9620 369 VKFVIN 374 (453)
Q Consensus 369 v~~VI~ 374 (453)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777664
No 233
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=64.79 E-value=10 Score=26.87 Aligned_cols=44 Identities=7% Similarity=0.246 Sum_probs=31.6
Q ss_pred HHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhcCCe-EEEEcCCC
Q psy9620 290 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDK 334 (453)
Q Consensus 290 ~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~ 334 (453)
..+..+...+..+++|+|.+-..+...+..|...|+. +..+ |++
T Consensus 31 ~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 31 ERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp HHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred HHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 3344432234568999999988899999999999885 5555 654
No 234
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=64.76 E-value=3.2 Score=35.95 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=16.0
Q ss_pred HhcCCcEEEEecCCCcchhh
Q psy9620 147 AMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~ 166 (453)
+..|+-+.+++|+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34678889999999999964
No 235
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.74 E-value=2.2 Score=41.36 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=30.3
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 111 PITEFAEANFPDYVLKEVKRQ---GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
|-.+|++.+=-+.+.+.+.+. -+..|.-++... +...+-+|+.+|+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 446788886555566655542 011111111111 112467999999999999653
No 236
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=64.59 E-value=2.5 Score=35.70 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.9
Q ss_pred CcEEEEecCCCcchhh
Q psy9620 151 SNMVGVAQTGSGKTLA 166 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~ 166 (453)
+-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999964
No 237
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=64.58 E-value=2.7 Score=37.42 Aligned_cols=15 Identities=33% Similarity=0.076 Sum_probs=12.8
Q ss_pred EEEEecCCCcchhhh
Q psy9620 153 MVGVAQTGSGKTLAY 167 (453)
Q Consensus 153 ~li~a~TGsGKT~~~ 167 (453)
+++++|||||||..+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 678999999999654
No 238
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=64.51 E-value=3 Score=34.75 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=15.7
Q ss_pred CCcEEEEecCCCcchhhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~ 168 (453)
.+.+++++++|||||....
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999997643
No 239
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=64.50 E-value=8.2 Score=36.20 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
..+.+++++|+|+|||..+
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3568999999999999654
No 240
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=64.46 E-value=2.9 Score=39.33 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.4
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
++.+++.+|+|+|||..+
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457999999999999754
No 241
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=64.41 E-value=2.3 Score=40.47 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=16.5
Q ss_pred hcCCcEEEEecCCCcchhhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~ 167 (453)
..+..+++++|||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45778899999999999653
No 242
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=64.38 E-value=2.6 Score=37.82 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=14.8
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
..+++++|+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999654
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=64.36 E-value=2.3 Score=35.64 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.9
Q ss_pred hcCCcEEEEecCCCcchhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~ 166 (453)
..|.-++++++.|||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3567789999999999964
No 244
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=64.26 E-value=2.9 Score=37.07 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.3
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
.+.+++.+|+|+|||...
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999654
No 245
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=64.08 E-value=2.8 Score=38.07 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
..+.+++.+|+|+|||..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3578999999999999654
No 246
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=63.99 E-value=9.3 Score=34.59 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=17.0
Q ss_pred hcCCcEEEEecCCCcchhhhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~ 168 (453)
..|.-+++.|++|+|||....
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHH
Confidence 357788899999999996543
No 247
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=63.98 E-value=3 Score=35.40 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=16.2
Q ss_pred hcCCcEEEEecCCCcchhhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~ 167 (453)
..|.-+++++|+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999653
No 248
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=63.82 E-value=47 Score=33.98 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=57.5
Q ss_pred EEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEc--------------------CC
Q psy9620 276 VEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY--GWAAVGIH--------------------GD 333 (453)
Q Consensus 276 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h--------------------~~ 333 (453)
+.-+....|...+..++... ..++||.++++..|..++..|... .-.|..+- ..
T Consensus 33 l~g~tgs~kt~~~a~~~~~~----~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~ 108 (664)
T 1c4o_A 33 LLGATGTGKTVTMAKVIEAL----GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKD 108 (664)
T ss_dssp EEECTTSCHHHHHHHHHHHH----TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCC
T ss_pred EEcCCCcHHHHHHHHHHHHh----CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhh
Confidence 33444555665566566543 458999999999999999999875 22333322 33
Q ss_pred CC-----HHHHHHHHHHHhcCCCcEEEEeccCccCC
Q psy9620 334 KS-----QQERDYVLKEFRNGRAGILVATDVAARGL 364 (453)
Q Consensus 334 ~~-----~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 364 (453)
.+ ...|..++..+.+++-.|+|+|-.+..++
T Consensus 109 ~~~~~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 109 ASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp CSCCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred cccCHHHHHHHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 32 56788999999877767888886544553
No 249
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=63.79 E-value=4.9 Score=29.86 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=31.6
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDK 334 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~ 334 (453)
+..+++|||.+-..+...+..|...|+++..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 356899999998889999999999999988888874
No 250
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=63.78 E-value=5.5 Score=29.44 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=32.1
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 335 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~ 335 (453)
+..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3568999999999999999999999998888888743
No 251
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=63.61 E-value=3.2 Score=35.15 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.7
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.|.-+.+++|+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677889999999999653
No 252
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=63.45 E-value=5.8 Score=33.62 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.3
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999653
No 253
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=63.39 E-value=3.4 Score=34.60 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.4
Q ss_pred CcEEEEecCCCcchhh
Q psy9620 151 SNMVGVAQTGSGKTLA 166 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~ 166 (453)
+-+.+++|+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999965
No 254
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=63.20 E-value=5.2 Score=37.05 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=32.0
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH-HHHHHHHHHHh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL-AQQIQEVARDF 209 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L-a~q~~~~~~~~ 209 (453)
.|.-+++.+++|+|||...+-.+........ ..+.+..++++.-...+ ..++.+.+..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~--~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE--KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGG--GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccc--cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999654333332211100 00114467777654332 45555555554
No 255
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=63.02 E-value=1.3 Score=40.16 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=26.3
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHH-HHHHHHHh--cCCcEEEEecCCCcchhhh
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQ-AQGWPIAM--SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~i~--~g~d~li~a~TGsGKT~~~ 167 (453)
|-.+|++..-.+.+.+.+.+. + ..|+. .+++..+- -.+.+++.+|+|+|||+..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~-i--~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMA-I--LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHH-H--THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-H--HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 345788877666676666543 1 11111 12222221 1234999999999999653
No 256
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=62.87 E-value=5.4 Score=34.87 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=18.2
Q ss_pred HhcCCcEEEEecCCCcchhhhhH
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l 169 (453)
+..|.-+.+.+|+|+|||.....
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH
Confidence 34678889999999999975543
No 257
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=62.80 E-value=13 Score=34.01 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=50.6
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC-----c-cCCCCCCC
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA-----A-RGLDVDDV 369 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-----~-~GiDip~v 369 (453)
..++||.|+++.-+.++++.+... +..+..+|++.+..+.... +. ..+|+|+|.-. . .-+++.++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 568999999999999999998853 5788899999887654332 22 37899999521 1 23456667
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 76663
No 258
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=62.75 E-value=22 Score=37.35 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=51.6
Q ss_pred CCcEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-C-----c-------c
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-A-----A-------R 362 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~-------~ 362 (453)
...++|.++|+.-|.+.++.+.. .++.+..+.|+++..+|.... .++|+|+|+- + . .
T Consensus 124 g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~~ 197 (844)
T 1tf5_A 124 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYKE 197 (844)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcchh
Confidence 45899999999999888877654 489999999999987765542 3789999961 1 1 2
Q ss_pred CCCCCCCcEEEE
Q psy9620 363 GLDVDDVKFVIN 374 (453)
Q Consensus 363 GiDip~v~~VI~ 374 (453)
.++...+.++|.
T Consensus 198 ~l~lr~~~~lVl 209 (844)
T 1tf5_A 198 QMVQRPLHFAVI 209 (844)
T ss_dssp GCCCCCCCEEEE
T ss_pred hhcccCCCEEEE
Confidence 356677777663
No 259
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=62.64 E-value=3.4 Score=35.31 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=16.5
Q ss_pred HHhcCCcEEEEecCCCcchhhh
Q psy9620 146 IAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 146 ~i~~g~d~li~a~TGsGKT~~~ 167 (453)
.+..|+-+.+.+|+|||||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888899999999999653
No 260
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=62.56 E-value=3.1 Score=36.88 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.0
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
.+.+++.+|+|+|||...
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 456999999999999653
No 261
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=62.27 E-value=3.3 Score=35.27 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=17.0
Q ss_pred HhcCCcEEEEecCCCcchhhh
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~ 167 (453)
+..++-+++++|+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 346778999999999999643
No 262
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=62.18 E-value=2.4 Score=38.31 Aligned_cols=54 Identities=17% Similarity=0.052 Sum_probs=28.7
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh--cCCcEEEEecCCCcchhhh
Q psy9620 111 PITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAM--SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~ 167 (453)
|-.+|+++.-.+.+.+.++..-.. . -...++..+- -.+.+++++|+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~--~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-H--HCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-H--HCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 335677766666665555543110 0 0011222211 1234899999999999653
No 263
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.08 E-value=2.3 Score=41.08 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.3
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
-+.+|+.+|.|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 467999999999999653
No 264
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=61.89 E-value=2.8 Score=34.30 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.3
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-+++++++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999754
No 265
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=61.61 E-value=2.5 Score=34.97 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCCcchhhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~ 168 (453)
.|.-+.+++|+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46667899999999996543
No 266
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=61.56 E-value=5.8 Score=29.70 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=31.3
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDK 334 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~ 334 (453)
+..+++|+|.+-..+...+..|...|+.+..+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 356899999998889999999999999988888874
No 267
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.54 E-value=6.6 Score=47.61 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHCCCCCCCHHHH-HHHH---HHhcCCcEEEEecCCCcchhhhhH
Q psy9620 120 FPDYVLKEVKRQGFDRPTPIQA-QGWP---IAMSGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 120 l~~~l~~~l~~~g~~~~~~~Q~-~~i~---~i~~g~d~li~a~TGsGKT~~~~l 169 (453)
|.+.+.+.+.+.|+ .+.+.+. +++. .+...+-++++||||||||.++-.
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 34566677778888 5666543 3333 333577899999999999988754
No 268
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=61.35 E-value=4.2 Score=38.33 Aligned_cols=18 Identities=44% Similarity=0.582 Sum_probs=14.8
Q ss_pred cCCc--EEEEecCCCcchhh
Q psy9620 149 SGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d--~li~a~TGsGKT~~ 166 (453)
.|.+ ++..++||||||.+
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 4776 57889999999965
No 269
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=61.24 E-value=14 Score=38.85 Aligned_cols=39 Identities=33% Similarity=0.409 Sum_probs=36.4
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhhhHHHH
Q psy9620 131 QGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAI 172 (453)
Q Consensus 131 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~l~~l 172 (453)
+|. .|+++|..+++.+++|+ |+.++||+|||++|.+|++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l 109 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAY 109 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHH
Confidence 465 99999999999999998 9999999999999999987
No 270
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=61.12 E-value=9.3 Score=34.29 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=19.0
Q ss_pred HhcCCcEEEEecCCCcchhhhhHH
Q psy9620 147 AMSGSNMVGVAQTGSGKTLAYMLP 170 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~~~l~ 170 (453)
+..|.-+++.+|+|+|||......
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHH
Confidence 457888999999999999765443
No 271
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=61.08 E-value=3.4 Score=38.27 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=13.7
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
.+++++|||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999654
No 272
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=60.78 E-value=3.9 Score=37.72 Aligned_cols=18 Identities=22% Similarity=0.205 Sum_probs=15.3
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+..++++||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 368999999999999654
No 273
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=60.77 E-value=4.2 Score=33.32 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.0
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+..++++++.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999653
No 274
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=60.51 E-value=6.2 Score=33.92 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=13.8
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
.+++.+|+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999653
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=60.48 E-value=3.2 Score=34.31 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=14.8
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+.-++++++.|||||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999654
No 276
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=60.45 E-value=3.7 Score=37.43 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.2
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
+.+++.+|+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999654
No 277
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=60.40 E-value=9.4 Score=29.63 Aligned_cols=37 Identities=11% Similarity=0.252 Sum_probs=31.3
Q ss_pred CcEEEEE-cchhHHHHHHHHHHhcCCeEEEEcCCCCHH
Q psy9620 301 NKTIIFA-ETKRKVDKITKSIQNYGWAAVGIHGDKSQQ 337 (453)
Q Consensus 301 ~~~lVF~-~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 337 (453)
.+++||| .+-..+...+..|...|+++..+.|++..-
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 6899999 577788899999999999999999986543
No 278
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=60.32 E-value=50 Score=24.53 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=0.0
Q ss_pred EEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q psy9620 303 TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGI 353 (453)
Q Consensus 303 ~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 353 (453)
.+||.........+...++..|..+..++++.+...|.+-++.|...-.+|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
No 279
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=60.16 E-value=11 Score=38.71 Aligned_cols=70 Identities=17% Similarity=0.320 Sum_probs=49.8
Q ss_pred CcEEEEEcchhHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----CccC-C-CCCCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-----AARG-L-DVDDV 369 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-i-Dip~v 369 (453)
.++||.++++.-+...++.+... ++.+..++|+.+...+...+. ...+|+|+|.- +..+ + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 68999999999999888888765 789999999876433322221 24899999962 2222 3 56677
Q ss_pred cEEEE
Q psy9620 370 KFVIN 374 (453)
Q Consensus 370 ~~VI~ 374 (453)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77764
No 280
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=59.97 E-value=7.6 Score=32.96 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=24.7
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
++=.++.++.|+|||.-.+-. +..... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~-i~n~~~-------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRR-VRRFQI-------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHH-------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHH-HHHHHH-------cCCeEEEEccc
Confidence 556789999999999543333 332222 23458998776
No 281
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=59.76 E-value=17 Score=31.63 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=38.4
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCe-EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
..++||+|+++.-+.++.+.+...+.. +..++++.. ...+|+|+|.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 568999999999999999999887777 888998754 2568888884
No 282
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=59.69 E-value=4.2 Score=38.28 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.4
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
.+.+|+.+|+|+|||+.+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 467999999999999754
No 283
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=59.67 E-value=27 Score=36.95 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=51.5
Q ss_pred CCcEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC------c-------c
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA------A-------R 362 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~-------~ 362 (453)
...++|.++|+.-|.+.++.+.. .++.+..+.++++..+|.... .++|+++|+-- . .
T Consensus 152 g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~~ 225 (922)
T 1nkt_A 152 GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSLD 225 (922)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccHh
Confidence 45899999999998877777654 489999999999987766544 37999999621 1 1
Q ss_pred CCCCCCCcEEEE
Q psy9620 363 GLDVDDVKFVIN 374 (453)
Q Consensus 363 GiDip~v~~VI~ 374 (453)
.++...+.++|.
T Consensus 226 ~l~lr~l~~lIV 237 (922)
T 1nkt_A 226 DLVQRGHHYAIV 237 (922)
T ss_dssp GCCCCCCCEEEE
T ss_pred hhccCCCCEEEE
Confidence 356667777663
No 284
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=59.63 E-value=10 Score=37.55 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=16.1
Q ss_pred CCcEEEEecCCCcchhhhhH
Q psy9620 150 GSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l 169 (453)
+.++++.+.||||||.+.-.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~ 186 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNA 186 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45789999999999976433
No 285
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=59.52 E-value=14 Score=40.95 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=39.1
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcC----CCCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQS----QLKPGDGPIVLVLAPTRELAQQIQEVARDF 209 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~----~~~~~~~~~vlil~Ptr~La~q~~~~~~~~ 209 (453)
..+|.|.-|||||.+..--++..+.... ...+-.-..+|+|+=|+.-|..+.+.+.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4599999999999776555555554321 001112236999999999999887766643
No 286
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=59.46 E-value=4.2 Score=35.29 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=15.9
Q ss_pred HhcCCcEEEEecCCCcchhh
Q psy9620 147 AMSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 147 i~~g~d~li~a~TGsGKT~~ 166 (453)
+..|+-+++++|+|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44677889999999999965
No 287
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=59.36 E-value=7.5 Score=28.24 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=30.7
Q ss_pred CcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 335 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~ 335 (453)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988899999999999998777888764
No 288
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=59.28 E-value=16 Score=33.42 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=40.8
Q ss_pred CcEEEEEcc-----------hhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy9620 301 NKTIIFAET-----------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348 (453)
Q Consensus 301 ~~~lVF~~s-----------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 348 (453)
+-+|||+|. ..+++.|.+.|+..|+.|. ++-+++..+-..++++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 358999998 6789999999999999976 5667999999999999964
No 289
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=58.38 E-value=4.8 Score=36.66 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.0
Q ss_pred CcEEEEecCCCcchhhhh
Q psy9620 151 SNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~ 168 (453)
..+++.+|+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999996643
No 290
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=58.30 E-value=12 Score=36.78 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=49.5
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcC----CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-CccC--CCCCCCcE
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYG----WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-AARG--LDVDDVKF 371 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~G--iDip~v~~ 371 (453)
...++||.|+++.-+.++++.|...+ ..+..+|++.+..++ ..+..+|+|+|.- +..- ..+.++.+
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~l 228 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGM 228 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEE
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCE
Confidence 34599999999999999999998752 367888988776554 4678899999953 2222 33455666
Q ss_pred EEE
Q psy9620 372 VIN 374 (453)
Q Consensus 372 VI~ 374 (453)
||.
T Consensus 229 iIi 231 (510)
T 2oca_A 229 MMN 231 (510)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 291
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=57.95 E-value=4.4 Score=37.17 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=15.5
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
...+++++|+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 468999999999999654
No 292
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=57.87 E-value=4.5 Score=35.21 Aligned_cols=20 Identities=30% Similarity=0.322 Sum_probs=12.4
Q ss_pred hcCCcEEEEecCCCcchhhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~ 167 (453)
..|+-+.+++|+|||||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777889999999999653
No 293
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=57.74 E-value=7.5 Score=36.43 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=24.5
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
.|+-+++.+++|+|||...+..+.... . .+..++++.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~-~-------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ-A-------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-H-------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-h-------CCCeEEEEECC
Confidence 457789999999999966444333322 2 13347777543
No 294
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=57.65 E-value=4.5 Score=37.49 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=15.0
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
.++++.+|+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999754
No 295
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=57.48 E-value=22 Score=35.36 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=49.1
Q ss_pred CcEEEEEcchhHHHHHHHHHHhc--------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc-----c--CCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNY--------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA-----R--GLD 365 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~-----~--GiD 365 (453)
.++||.++++.-|.++++.+... ...+..++++.+... .++.+..+..+|||+|.-.- + ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 48999999999999999888762 355777777766443 34555556789999996321 1 234
Q ss_pred CCCCcEEEE
Q psy9620 366 VDDVKFVIN 374 (453)
Q Consensus 366 ip~v~~VI~ 374 (453)
+..+.+||.
T Consensus 224 ~~~~~~lVi 232 (563)
T 3i5x_A 224 FRFVDYKVL 232 (563)
T ss_dssp CTTCCEEEE
T ss_pred cccceEEEE
Confidence 566776653
No 296
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=57.34 E-value=4.3 Score=39.64 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=16.0
Q ss_pred CCcEEEEecCCCcchhhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~ 168 (453)
++.+|+.+|+|+|||..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4689999999999997653
No 297
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=57.31 E-value=4.3 Score=37.88 Aligned_cols=16 Identities=44% Similarity=0.287 Sum_probs=13.5
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-++|++|||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4689999999999654
No 298
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=57.25 E-value=9.7 Score=32.35 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=27.9
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEc
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLA 193 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 193 (453)
.-.+++..++|.|||.+++-.++..+.+ |.+|+|+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~--------G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH--------GKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT--------TCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEE
Confidence 3478899999999999987777776654 55688884
No 299
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=57.12 E-value=4.9 Score=34.04 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.8
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.+.-++++++.|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677889999999999654
No 300
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=56.83 E-value=4.6 Score=38.63 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=13.2
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-++|++|||+|||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3678999999999654
No 301
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=56.57 E-value=4.2 Score=34.77 Aligned_cols=20 Identities=25% Similarity=0.135 Sum_probs=16.2
Q ss_pred cCCcEEEEecCCCcchhhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~ 168 (453)
.|.-+++.+++|+|||....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46678899999999996543
No 302
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=56.44 E-value=5.1 Score=33.45 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=15.9
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.+..++++++.|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999754
No 303
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=56.37 E-value=11 Score=37.66 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=17.3
Q ss_pred CcEEEEecCCCcchhhhhHHHHH
Q psy9620 151 SNMVGVAQTGSGKTLAYMLPAIV 173 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l~~l~ 173 (453)
-+++|.+.||||||.+....++.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999765443333
No 304
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=56.27 E-value=9.2 Score=35.20 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=31.8
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhc------CCCCCC-C-CcEEEEEcCCHHH-HHHHHHHHHHh
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQ------SQLKPG-D-GPIVLVLAPTREL-AQQIQEVARDF 209 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~------~~~~~~-~-~~~vlil~Ptr~L-a~q~~~~~~~~ 209 (453)
|.-+++.+++|+|||...+-.+....... .....+ . ...++++.-...+ ..++.+.+..+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 45688999999999965443333221110 000000 0 1467777655433 55666555555
No 305
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=56.26 E-value=7.9 Score=36.41 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=25.1
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCC
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPT 195 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Pt 195 (453)
.++-+++.+++|+|||...+-.+.... . .+..++++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~-~-------~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R-------EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-H-------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H-------CCCeEEEEeCC
Confidence 467789999999999976544333322 2 13347777653
No 306
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=56.20 E-value=4.2 Score=33.87 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=14.9
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+.-++++++.|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999754
No 307
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=56.12 E-value=4 Score=33.63 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.3
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-++++++.|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3688999999999654
No 308
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=55.78 E-value=25 Score=35.29 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=49.2
Q ss_pred CcEEEEEcchhHHHHHHHHHHhc--------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccC-----cc--CCC
Q psy9620 301 NKTIIFAETKRKVDKITKSIQNY--------GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVA-----AR--GLD 365 (453)
Q Consensus 301 ~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-----~~--GiD 365 (453)
.++||.++++.-+.++++.+... .+.+..++++.+..+ .++.+..+..+|||+|.-. .+ ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 48999999999999998888763 356777777765443 3455555678999999621 11 234
Q ss_pred CCCCcEEEE
Q psy9620 366 VDDVKFVIN 374 (453)
Q Consensus 366 ip~v~~VI~ 374 (453)
+..+.+||.
T Consensus 173 ~~~~~~lVi 181 (579)
T 3sqw_A 173 FRFVDYKVL 181 (579)
T ss_dssp CTTCCEEEE
T ss_pred cccCCEEEE
Confidence 566776663
No 309
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=55.77 E-value=7.6 Score=32.89 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=35.1
Q ss_pred CCcEEEEEcchhHHHH-HHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDK-ITKSIQN---YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~-l~~~L~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
..++||+|+++.-+++ +.+.+.. .++.+..++++....++...+. ...+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5689999999998887 5555554 3678888888754332221111 1478999995
No 310
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.54 E-value=7.2 Score=36.17 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.6
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
.++++.+|+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999654
No 311
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=55.47 E-value=6.1 Score=35.10 Aligned_cols=20 Identities=40% Similarity=0.398 Sum_probs=17.3
Q ss_pred cCCcEEEEecCCCcchhhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~ 168 (453)
.++.++++++.|||||...-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 48999999999999997643
No 312
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=55.42 E-value=6 Score=32.73 Aligned_cols=16 Identities=31% Similarity=0.177 Sum_probs=13.3
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-.++++++|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4578999999999653
No 313
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=55.22 E-value=3.9 Score=35.28 Aligned_cols=19 Identities=26% Similarity=0.163 Sum_probs=15.8
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.|.-+.+++|+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5677889999999999654
No 314
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=55.18 E-value=14 Score=35.70 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=14.0
Q ss_pred cEEEEecCCCcchhhhh
Q psy9620 152 NMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~ 168 (453)
-+++++++|+|||.+..
T Consensus 102 vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 47788999999997653
No 315
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=55.00 E-value=8.5 Score=42.56 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=30.3
Q ss_pred EEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy9620 154 VGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208 (453)
Q Consensus 154 li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~ 208 (453)
+|.|..|||||.+.+--+...+.... .+..+|+|||... .-++.+.+..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~-----~~~~il~lVP~q~-TFt~~~rl~~ 53 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP-----FGKPIIFLVPDQM-TFLMEYELAK 53 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT-----TSSCEEEECCGGG-HHHHHHHHTC
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC-----CCCcEEEEecCcc-cHHHHHHHHH
Confidence 78999999999775544443333321 3456999999764 3334444433
No 316
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=54.96 E-value=3.6 Score=38.26 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=15.6
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
...++++.||+|+|||..+
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 3457999999999999654
No 317
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=54.93 E-value=5 Score=38.22 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.7
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
.+.+|+.+|+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999654
No 318
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=54.93 E-value=9.3 Score=33.29 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=15.7
Q ss_pred cEEEEecCCCcchhhhhHHH
Q psy9620 152 NMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~ 171 (453)
++++.++.|+|||.+.+--+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58889999999997754433
No 319
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=54.52 E-value=16 Score=35.53 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=39.6
Q ss_pred CCcEEEEEcchhHHHHHHHHHHhcCCe-EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
..++||.|+++.-+.++++.|...+.. +..+||+... ..+|+|+|.
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 568999999999999999999988888 9999998652 467888885
No 320
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=54.39 E-value=5.4 Score=32.50 Aligned_cols=16 Identities=6% Similarity=-0.188 Sum_probs=13.4
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-++++++.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999754
No 321
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=54.37 E-value=9 Score=35.97 Aligned_cols=42 Identities=26% Similarity=0.269 Sum_probs=25.9
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL 198 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L 198 (453)
.|.-+++.+|+|+|||... +.++..+.. .+..++++.....+
T Consensus 60 ~G~i~~I~GppGsGKSTLa-l~la~~~~~-------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLA-LHAIAEAQK-------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHHHH-------TTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEeccccc
Confidence 3567889999999999644 333333322 23457777655433
No 322
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=54.30 E-value=9.7 Score=33.30 Aligned_cols=40 Identities=20% Similarity=0.075 Sum_probs=27.0
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~ 197 (453)
|+=.+++++-|+|||...+--+..+.. .+.+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~--------~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQI--------AQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT--------TTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH--------CCCeEEEEeecCC
Confidence 555688899999999765444443332 3556898888753
No 323
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=54.17 E-value=5.5 Score=37.02 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.2
Q ss_pred CcEEEEecCCCcchhhhh
Q psy9620 151 SNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~ 168 (453)
..+++.+|+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 678999999999997643
No 324
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=53.98 E-value=9.1 Score=35.79 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=15.5
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
++.+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999654
No 325
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=53.96 E-value=2.8 Score=37.39 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=15.1
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
.+.+++.+|+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456899999999999654
No 326
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=53.96 E-value=11 Score=29.03 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=31.0
Q ss_pred CCCcEEEEEcchhH--HHHHHHHHHhcCCeEEEEcCCCC
Q psy9620 299 DENKTIIFAETKRK--VDKITKSIQNYGWAAVGIHGDKS 335 (453)
Q Consensus 299 ~~~~~lVF~~s~~~--~~~l~~~L~~~~~~~~~~h~~~~ 335 (453)
+..+++|||.+-.. +...+..|...|+.+..+.|++.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 35689999998776 88899999999999888888754
No 327
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=53.84 E-value=5.1 Score=37.65 Aligned_cols=19 Identities=37% Similarity=0.328 Sum_probs=15.9
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
....++++||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3568999999999999654
No 328
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=53.75 E-value=5 Score=33.01 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=15.0
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+..++++++.|||||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556889999999999754
No 329
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=53.63 E-value=4.8 Score=35.03 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=17.0
Q ss_pred cCCcEEEEecCCCcchhhhhH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l 169 (453)
.|.-+++.+|+|+|||.....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 567789999999999976543
No 330
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=53.57 E-value=9.3 Score=37.10 Aligned_cols=50 Identities=22% Similarity=0.051 Sum_probs=27.8
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVA 206 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~ 206 (453)
.|.-+++.|++|+|||...+-.+...... .+..|+++... .-..|+...+
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-------~g~~vl~~slE-~~~~~l~~R~ 248 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-------EGVGVGIYSLE-MPAAQLTLRM 248 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-------TCCCEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEECC-CCHHHHHHHH
Confidence 35567899999999995443333332221 13347776543 2234554443
No 331
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=52.94 E-value=5.3 Score=33.86 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 135 RPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 135 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
..+..+...+ ....+.-++++++.|||||...
T Consensus 11 ~~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 11 SVEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCCHHHHHHH-HTSCCEEEEEECSTTSSHHHHH
T ss_pred ccCHHHHHHh-cCCCCeEEEEECCCCCCHHHHH
Confidence 3444444332 2235667889999999999654
No 332
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=52.77 E-value=7.3 Score=33.27 Aligned_cols=31 Identities=16% Similarity=0.039 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 136 PTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 136 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
.++.+.... .+..+.-++++++.|||||...
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 344555542 3445777889999999999654
No 333
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=52.74 E-value=16 Score=27.21 Aligned_cols=38 Identities=8% Similarity=0.157 Sum_probs=32.0
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCe-EEEEcCCCCH
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 336 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 336 (453)
+..+++|||.+-..+...+..|...|+. +..+.|++..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 4568999999988899999999999984 8888887643
No 334
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=52.63 E-value=8.8 Score=38.98 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=18.6
Q ss_pred HHhcCCcEEEEecCCCcchhhh
Q psy9620 146 IAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 146 ~i~~g~d~li~a~TGsGKT~~~ 167 (453)
.+..++.+++.+|+|+|||..+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 4557899999999999999654
No 335
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=52.60 E-value=6.8 Score=33.41 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=13.8
Q ss_pred EEEEecCCCcchhhhhH
Q psy9620 153 MVGVAQTGSGKTLAYML 169 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l 169 (453)
.+++|+.|||||+..+.
T Consensus 8 ~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 57999999999976533
No 336
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=52.53 E-value=5.6 Score=36.49 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=15.8
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|+-+.+++|+|||||..
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 578889999999999964
No 337
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=52.50 E-value=31 Score=36.60 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=43.3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
...++|.++|+.-|.+.++.+.. .++.+..+.|+++..+|.... .++|+|+|+
T Consensus 120 G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 120 GKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp CSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 45799999999988887777654 489999999999987776654 379999996
No 338
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=52.47 E-value=6.3 Score=37.19 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=14.5
Q ss_pred cEEEEecCCCcchhhhhH
Q psy9620 152 NMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l 169 (453)
-.++++|||+|||..+-.
T Consensus 25 ~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 467899999999976533
No 339
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=52.47 E-value=6.6 Score=31.60 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=13.1
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-.+|++|+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3578999999999653
No 340
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=52.47 E-value=18 Score=42.01 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=19.6
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVH 174 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~ 174 (453)
++.+++++|+|+|||..+...+...
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999997765444443
No 341
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=52.43 E-value=4.5 Score=35.56 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.3
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|+-+.+++|+|||||..
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577788999999999953
No 342
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=52.43 E-value=11 Score=32.59 Aligned_cols=40 Identities=18% Similarity=0.051 Sum_probs=25.4
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHH
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRE 197 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~ 197 (453)
|.=.+++++-|+|||...+-. +..... .+.+++|+.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~-~~r~~~-------~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRR-LRRGIY-------AKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHH-------TTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHH-HHHHHH-------cCCceEEEEeccC
Confidence 455688999999999654333 333332 2455899988653
No 343
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=52.34 E-value=68 Score=23.96 Aligned_cols=45 Identities=4% Similarity=-0.006 Sum_probs=33.4
Q ss_pred CCcEEEEE------cchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHH
Q psy9620 300 ENKTIIFA------ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 344 (453)
Q Consensus 300 ~~~~lVF~------~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 344 (453)
..+++||. ++.-.|..+.+.|...++....+.=..++..+..+.+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 56899999 5788999999999999887766654445555555444
No 344
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=52.34 E-value=69 Score=23.74 Aligned_cols=46 Identities=9% Similarity=0.088 Sum_probs=33.8
Q ss_pred CCcEEEEEc------chhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Q psy9620 300 ENKTIIFAE------TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKE 345 (453)
Q Consensus 300 ~~~~lVF~~------s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 345 (453)
..+++||.. ..-.|..+.+.|.+.++....+.=...+..+..+.+.
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 458999998 4899999999999998877666544455555554443
No 345
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=52.27 E-value=17 Score=35.05 Aligned_cols=17 Identities=35% Similarity=0.276 Sum_probs=13.8
Q ss_pred cEEEEecCCCcchhhhh
Q psy9620 152 NMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~ 168 (453)
-+++++++|+|||.+..
T Consensus 99 vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEECCCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999997654
No 346
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=52.22 E-value=5.9 Score=33.78 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=14.7
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.+.-+.+.+|+|||||...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556778999999999643
No 347
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=52.09 E-value=5.7 Score=38.68 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.0
Q ss_pred CcEEEEecCCCcchhhhh
Q psy9620 151 SNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~ 168 (453)
.++++++|+|+|||..+.
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 469999999999997543
No 348
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=52.05 E-value=9.3 Score=37.22 Aligned_cols=49 Identities=18% Similarity=0.074 Sum_probs=27.4
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEV 205 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~ 205 (453)
.|.-+++.|++|+|||...+-.+....... +..|+++...-. ..|+...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-------g~~Vl~~s~E~s-~~~l~~r 250 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-------NENVAIFSLEMS-AQQLVMR 250 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-------SCCEEEEESSSC-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEECCCC-HHHHHHH
Confidence 456688999999999965443333322221 224777764322 2444444
No 349
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=51.95 E-value=9.4 Score=37.11 Aligned_cols=50 Identities=12% Similarity=-0.045 Sum_probs=28.7
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVAR 207 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~ 207 (453)
.|.-+++.|++|+|||...+--+...... +..|++++-- +-..|+...+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--------g~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--------DDVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--------TCEEEEECSS-SCTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--------CCEEEEEECC-CCHHHHHHHHH
Confidence 45668899999999996544333333221 3357777543 33344444443
No 350
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=51.80 E-value=6.3 Score=32.85 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.7
Q ss_pred cEEEEecCCCcchhh
Q psy9620 152 NMVGVAQTGSGKTLA 166 (453)
Q Consensus 152 d~li~a~TGsGKT~~ 166 (453)
.+.+.+|+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999965
No 351
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=51.71 E-value=13 Score=30.74 Aligned_cols=15 Identities=33% Similarity=0.111 Sum_probs=12.3
Q ss_pred cEEEEecCCCcchhh
Q psy9620 152 NMVGVAQTGSGKTLA 166 (453)
Q Consensus 152 d~li~a~TGsGKT~~ 166 (453)
-+.++++.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 357889999999964
No 352
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=51.68 E-value=11 Score=35.61 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=24.7
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTR 196 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr 196 (453)
.+.-+++.+++|+|||...+ .++..+.. .+..|+++....
T Consensus 73 ~G~li~I~G~pGsGKTtlal-~la~~~~~-------~g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLAL-AIVAQAQK-------AGGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHH-HHHHHHHH-------TTCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHH-HHHHHHHH-------CCCeEEEEECCC
Confidence 45678899999999996543 33333322 133477776543
No 353
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=51.56 E-value=6.3 Score=32.87 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.3
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-+++++|+|+|||...
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4678999999999754
No 354
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=51.47 E-value=3.5 Score=42.63 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=47.5
Q ss_pred CCcEEEEEcchhHHHHH-HHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-Cc-----------cC
Q psy9620 300 ENKTIIFAETKRKVDKI-TKSIQNYG---WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDV-AA-----------RG 363 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l-~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~-----------~G 363 (453)
..++||.+|++.-+.++ ++.|.... +.+..+||+.+..++...+. +..+|||+|.- +. ..
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~ 131 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 131 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccc
Confidence 36899999999999888 88887653 79999999876554333222 56899999952 22 22
Q ss_pred CCCCCCcEEEE
Q psy9620 364 LDVDDVKFVIN 374 (453)
Q Consensus 364 iDip~v~~VI~ 374 (453)
+.+.++++||.
T Consensus 132 ~~~~~~~lvVi 142 (699)
T 4gl2_A 132 VQLSDFSLIII 142 (699)
T ss_dssp CCGGGCSEEEE
T ss_pred eecccCcEEEE
Confidence 46667777764
No 355
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=51.41 E-value=7.3 Score=32.88 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=14.5
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
|.-+.+++|+|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 345789999999999653
No 356
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=51.36 E-value=6.7 Score=39.76 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=13.7
Q ss_pred cEEEEecCCCcchhh
Q psy9620 152 NMVGVAQTGSGKTLA 166 (453)
Q Consensus 152 d~li~a~TGsGKT~~ 166 (453)
++|+.+|+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999954
No 357
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=51.32 E-value=11 Score=28.22 Aligned_cols=37 Identities=5% Similarity=0.278 Sum_probs=31.1
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCe-EEEEcCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKS 335 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~ 335 (453)
...+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3568999999988899999999999985 878888753
No 358
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.17 E-value=10 Score=37.71 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=15.4
Q ss_pred CcEEEEecCCCcchhhhh
Q psy9620 151 SNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~ 168 (453)
+.++++||+|+|||.++.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 679999999999997643
No 359
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=51.10 E-value=11 Score=41.31 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=48.9
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCccCC-CCCCCcEE
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAARGL-DVDDVKFV 372 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~Gi-Dip~v~~V 372 (453)
...++||.+|++.-+.+.++.|....-.+..++|+++ .++..+|+|+|. .+.++- .+.++.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 3568999999999999999999987668999999886 346789999993 343332 24556665
Q ss_pred E
Q psy9620 373 I 373 (453)
Q Consensus 373 I 373 (453)
|
T Consensus 295 V 295 (1108)
T 3l9o_A 295 I 295 (1108)
T ss_dssp E
T ss_pred E
Confidence 5
No 360
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=51.01 E-value=9.3 Score=37.40 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=16.4
Q ss_pred cCCcEEEEecCCCcchhhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~ 168 (453)
...++|+++|+|+|||....
T Consensus 200 ~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 34689999999999997653
No 361
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=50.87 E-value=6 Score=38.46 Aligned_cols=53 Identities=11% Similarity=0.121 Sum_probs=29.5
Q ss_pred ccccccccCCCHHHHHHHHHCC-C--CCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 111 PITEFAEANFPDYVLKEVKRQG-F--DRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~g-~--~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
|-.+|+++.-.+.+.+.|.+.- + ..|.-++ ......+.+|+.+|+|+|||+.+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHH
Confidence 4457777765556666555420 0 0000000 01123468999999999999654
No 362
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=50.70 E-value=12 Score=34.56 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=30.6
Q ss_pred cEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHhc
Q psy9620 152 NMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFG 210 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~~~~~ 210 (453)
-+++.+|.|+|||...+-.+. .+... +.+.+++++.....+... .++.++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~-~~~~~-----g~g~~vlyId~E~s~~~~---ra~~lG 79 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS-SYMRQ-----YPDAVCLFYDSEFGITPA---YLRSMG 79 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH-HHHHH-----CTTCEEEEEESSCCCCHH---HHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHH-HHHhc-----CCCceEEEEeccchhhHH---HHHHhC
Confidence 578999999999966543333 33221 124568888776555332 355554
No 363
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=50.68 E-value=99 Score=30.20 Aligned_cols=111 Identities=7% Similarity=0.073 Sum_probs=72.1
Q ss_pred eEEEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc-CCeEEEEcC-------CCC-----HHHHH
Q psy9620 274 QVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHG-------DKS-----QQERD 340 (453)
Q Consensus 274 ~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~h~-------~~~-----~~~r~ 340 (453)
+.+.-+....|.-.+..++.. ...++||.|++...|..++..|... +..|..+=+ ..+ ..+|.
T Consensus 17 ~~l~g~~gs~ka~~~a~l~~~----~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl 92 (483)
T 3hjh_A 17 RLLGELTGAACATLVAEIAER----HAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRL 92 (483)
T ss_dssp EEEECCCTTHHHHHHHHHHHH----SSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHH
T ss_pred EEEeCCCchHHHHHHHHHHHH----hCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHH
Confidence 344444555555555555543 3568999999999999999999864 223443322 111 24688
Q ss_pred HHHHHHhcCCCcEEEEeccCccCCCCC-----CCcEEEEcCCCCChhHHHHhh
Q psy9620 341 YVLKEFRNGRAGILVATDVAARGLDVD-----DVKFVINFDYPNNSEDYIHRI 388 (453)
Q Consensus 341 ~~~~~f~~g~~~vLvaT~~~~~GiDip-----~v~~VI~~d~p~s~~~y~qr~ 388 (453)
.++..+.+++..|||+|-.+..+.=.| ...+.+..+-..+.+++.++.
T Consensus 93 ~~l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L 145 (483)
T 3hjh_A 93 STLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 (483)
T ss_dssp HHHHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHH
Confidence 899999888888999986554443333 235667777777777776553
No 364
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=50.54 E-value=5.1 Score=33.28 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=14.9
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+..++++++.|||||...
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999754
No 365
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=50.35 E-value=15 Score=35.66 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=15.7
Q ss_pred CCcEEEEecCCCcchhhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~ 168 (453)
...+++.||+|+|||....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999997543
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=50.26 E-value=13 Score=34.09 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=14.6
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+.-+.+++|+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456778999999999653
No 367
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=50.16 E-value=8.2 Score=40.11 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=18.5
Q ss_pred HHHHHhcCCc--EEEEecCCCcchhh
Q psy9620 143 GWPIAMSGSN--MVGVAQTGSGKTLA 166 (453)
Q Consensus 143 ~i~~i~~g~d--~li~a~TGsGKT~~ 166 (453)
.+..+++|.| ++..++||||||.+
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~T 479 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFT 479 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhc
Confidence 4566778887 45668999999965
No 368
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=49.95 E-value=6 Score=35.92 Aligned_cols=17 Identities=35% Similarity=0.319 Sum_probs=13.9
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
.-++++||.|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999654
No 369
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=49.95 E-value=15 Score=34.25 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=31.0
Q ss_pred CCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHH-HHHHHHHHHHh
Q psy9620 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTREL-AQQIQEVARDF 209 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~L-a~q~~~~~~~~ 209 (453)
|.-+++.+++|+|||...+-.+...... ....+.+..++++.-...+ ..++...+..+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~--~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLP--GAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSC--BTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcc--cccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 4567899999999996543333221111 0011124567777654432 34455555554
No 370
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=49.85 E-value=6.9 Score=33.06 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.4
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
.-++++|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999754
No 371
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=49.62 E-value=11 Score=35.17 Aligned_cols=49 Identities=27% Similarity=0.153 Sum_probs=28.7
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVA 206 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~ 206 (453)
.|.-+++.|++|+|||...+-.+. .+.. .+..|+|++.- .-..|+...+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~-~~a~-------~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVL-SALN-------DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHH-HHHH-------TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH-HHHH-------cCCeEEEEeCC-CCHHHHHHHH
Confidence 466688899999999965433333 3322 23457777643 2344554444
No 372
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=49.54 E-value=13 Score=40.34 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=42.1
Q ss_pred eecccCCCccccccccC--CCHHHHHHHHHCCCC----CCCHHHHHHHHHHh---cCCcEEEEecCCCcchhhhhH
Q psy9620 103 TLKGNAPNPITEFAEAN--FPDYVLKEVKRQGFD----RPTPIQAQGWPIAM---SGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 103 ~~~~~~p~p~~~f~~~~--l~~~l~~~l~~~g~~----~~~~~Q~~~i~~i~---~g~d~li~a~TGsGKT~~~~l 169 (453)
+-.|.+--.+..|..++ ..+..++.++..... +++.+=..|+..++ ..+.+||.+.+|+|||.+.-+
T Consensus 88 Ty~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~ 163 (1052)
T 4anj_A 88 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 163 (1052)
T ss_dssp EEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH
T ss_pred EeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH
Confidence 44566333344455554 367777777654333 33445566666655 356799999999999988644
No 373
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=49.39 E-value=9.1 Score=35.95 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=14.1
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
.++++||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999654
No 374
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=49.22 E-value=16 Score=29.12 Aligned_cols=37 Identities=11% Similarity=0.111 Sum_probs=30.7
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCC-eEEEEcCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKS 335 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~ 335 (453)
+..+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 356899999998888899999999998 5888988874
No 375
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=48.80 E-value=8.2 Score=31.68 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=14.3
Q ss_pred cEEEEecCCCcchhhhh
Q psy9620 152 NMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~ 168 (453)
.++++++.|||||...-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999997543
No 376
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=48.65 E-value=5.8 Score=39.12 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.4
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
.+.+|+.+|+|+|||+.+
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 467999999999999754
No 377
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=48.63 E-value=7.6 Score=31.63 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.2
Q ss_pred CcEEEEecCCCcchhhhh
Q psy9620 151 SNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~ 168 (453)
+++++.++.|||||...-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999997653
No 378
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=48.61 E-value=47 Score=27.52 Aligned_cols=48 Identities=15% Similarity=0.304 Sum_probs=40.0
Q ss_pred CCcEEEEEcc-----------hhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy9620 300 ENKTIIFAET-----------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348 (453)
Q Consensus 300 ~~~~lVF~~s-----------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 348 (453)
.+.+|||.+. ..+++.|.+.|...++.|. ++.+++..+-..++++|..
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 3468888875 3789999999999999986 5677999999999999964
No 379
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=48.61 E-value=5.6 Score=34.97 Aligned_cols=57 Identities=7% Similarity=0.054 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCeEEEE---cCCCCHHHHHHHHHHHh-----cCCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 315 KITKSIQNYGWAAVGI---HGDKSQQERDYVLKEFR-----NGRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 315 ~l~~~L~~~~~~~~~~---h~~~~~~~r~~~~~~f~-----~g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
.++..|.. .-.+..+ .+.++...+..+++.+. .....||++|-.... +.. ++.|+..
T Consensus 137 ~lAraL~~-~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~-~~~--~d~v~~l 201 (237)
T 2cbz_A 137 SLARAVYS-NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY-LPQ--VDVIIVM 201 (237)
T ss_dssp HHHHHHHH-CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT-GGG--SSEEEEE
T ss_pred HHHHHHhc-CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH-HHh--CCEEEEE
Confidence 34444443 2344444 56788888888888773 123567888865543 332 4555543
No 380
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=48.60 E-value=6.5 Score=32.77 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=14.5
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+.-++++++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345789999999999754
No 381
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=48.46 E-value=12 Score=29.86 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=31.4
Q ss_pred CCCcEEEEEcch--hHHHHHHHHHHhcCCeEEEEcCCCC
Q psy9620 299 DENKTIIFAETK--RKVDKITKSIQNYGWAAVGIHGDKS 335 (453)
Q Consensus 299 ~~~~~lVF~~s~--~~~~~l~~~L~~~~~~~~~~h~~~~ 335 (453)
+..+++|||.+- ..+...+..|...|+++..+.|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 356899999987 5888999999999999989999754
No 382
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=48.29 E-value=14 Score=29.07 Aligned_cols=37 Identities=11% Similarity=0.244 Sum_probs=31.2
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCe-EEEEcCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKS 335 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~ 335 (453)
...+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3568999999988899999999999985 888888754
No 383
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=48.15 E-value=25 Score=26.24 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=31.0
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 335 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~ 335 (453)
+..+++|||.+-..+...+..|...|+....+.|++.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4568999999998999999999999986567778754
No 384
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=48.14 E-value=46 Score=27.25 Aligned_cols=83 Identities=10% Similarity=0.184 Sum_probs=55.4
Q ss_pred CCcEEEEEcc--------------hhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc----CCCcEEEEeccCc
Q psy9620 300 ENKTIIFAET--------------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN----GRAGILVATDVAA 361 (453)
Q Consensus 300 ~~~~lVF~~s--------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~----g~~~vLvaT~~~~ 361 (453)
.+.+|||.+. ..+++.|.+.|...++.|. ++.+++..+-..++++|.. .....+|+ -+++
T Consensus 33 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~~dh~~~dc~vv-~ilS 110 (167)
T 1pyo_A 33 RGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVH-VLCDQTAQEMQEKLQNFAQLPAHRVTDSCIV-ALLS 110 (167)
T ss_dssp SEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHTCGGGGTSSEEEE-EEES
T ss_pred ceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHhhhhhhccCCCEEEE-EeCC
Confidence 4567888765 3479999999999999874 5677999999999999976 23344443 3456
Q ss_pred cCCCCCCCcEEEEcCC-CCChhHHHHhh
Q psy9620 362 RGLDVDDVKFVINFDY-PNNSEDYIHRI 388 (453)
Q Consensus 362 ~GiDip~v~~VI~~d~-p~s~~~y~qr~ 388 (453)
.|.. ..|+-.|- +-++.+.+...
T Consensus 111 HG~~----g~i~g~D~~~v~l~~i~~~F 134 (167)
T 1pyo_A 111 HGVE----GAIYGVDGKLLQLQEVFQLF 134 (167)
T ss_dssp CEET----TEEECTTSCEEEHHHHHHHT
T ss_pred CCCC----CeEEEeCCCEEcHHHHHHHh
Confidence 6654 44554443 23455555444
No 385
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=48.12 E-value=11 Score=35.36 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.1
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
.+.+++++|+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999654
No 386
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=48.01 E-value=15 Score=33.67 Aligned_cols=14 Identities=29% Similarity=0.261 Sum_probs=12.2
Q ss_pred EEEEecCCCcchhh
Q psy9620 153 MVGVAQTGSGKTLA 166 (453)
Q Consensus 153 ~li~a~TGsGKT~~ 166 (453)
++++++.|||||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 57899999999964
No 387
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=47.99 E-value=40 Score=29.92 Aligned_cols=39 Identities=5% Similarity=0.106 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 310 KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 310 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
..+++.|.+.|+..|+.|. ++.+++..+-..++++|..-
T Consensus 43 ~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 81 (259)
T 3sir_A 43 NVDCENLTRVLKQLDFEVT-VYKDCRYKDILRTIEYSASQ 81 (259)
T ss_dssp CCHHHHHHHHHHHTTCEEE-EEEECSHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 4689999999999999975 56689999999999999854
No 388
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=47.96 E-value=6.2 Score=34.09 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.7
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|+-+.+.+|.|||||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577888999999999964
No 389
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=47.88 E-value=9.9 Score=31.76 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=15.5
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.+.-++++++.|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567889999999999654
No 390
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=47.87 E-value=12 Score=34.55 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=13.9
Q ss_pred EEEEecCCCcchhhhh
Q psy9620 153 MVGVAQTGSGKTLAYM 168 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~ 168 (453)
+++.||.|+|||....
T Consensus 49 ~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIV 64 (340)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999996643
No 391
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=47.83 E-value=9.3 Score=31.85 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.8
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.+.-++++++.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567889999999999754
No 392
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=47.77 E-value=5.2 Score=34.02 Aligned_cols=20 Identities=25% Similarity=-0.041 Sum_probs=15.4
Q ss_pred hcCCcEEEEecCCCcchhhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~ 167 (453)
..+.-+.+++++|||||...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34556789999999999643
No 393
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=47.75 E-value=11 Score=34.42 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=14.2
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
++++.||+|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999764
No 394
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=47.58 E-value=42 Score=30.02 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=33.8
Q ss_pred chhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy9620 309 TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348 (453)
Q Consensus 309 s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 348 (453)
+..+++.|.+.|+..|+.|. ++.+++..+-..++++|..
T Consensus 47 t~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 45789999999999999975 5678999999999999975
No 395
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=47.58 E-value=13 Score=28.82 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=31.6
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCe-EEEEcCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKS 335 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~ 335 (453)
...+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3568999999988899999999999985 888888864
No 396
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=47.56 E-value=39 Score=30.97 Aligned_cols=49 Identities=8% Similarity=0.123 Sum_probs=40.8
Q ss_pred CCCcEEEEEcch------------hHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy9620 299 DENKTIIFAETK------------RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRN 348 (453)
Q Consensus 299 ~~~~~lVF~~s~------------~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 348 (453)
..+-+|||.+.. .+++.|.+.|+..|+.|. ++.+++..+-..++++|..
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIF-PYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEE-EECSCCHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EccCCCHHHHHHHHHHHHH
Confidence 345688888763 789999999999999975 6678999999999999964
No 397
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=47.26 E-value=1.1e+02 Score=24.65 Aligned_cols=35 Identities=6% Similarity=0.085 Sum_probs=27.3
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCc
Q psy9620 186 GPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGA 224 (453)
Q Consensus 186 ~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~ 224 (453)
..++||.|+++..+..+.+.+... ++.+..++|+.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~ 65 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGM 65 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTS
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCC
Confidence 345999999999999999998885 35666666653
No 398
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=47.23 E-value=7.6 Score=32.99 Aligned_cols=18 Identities=28% Similarity=0.012 Sum_probs=14.1
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+.-+.+.+++|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445678999999999653
No 399
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=47.20 E-value=14 Score=33.80 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=14.2
Q ss_pred CcEEEEecCCCcchhhhh
Q psy9620 151 SNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~ 168 (453)
+-+++++++|+|||....
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 457789999999996643
No 400
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=47.08 E-value=76 Score=32.44 Aligned_cols=108 Identities=12% Similarity=0.190 Sum_probs=67.1
Q ss_pred EEEccccchhhhHHHHHHhhhcCCCCcEEEEEcchhHHHHHHHHHHhc--CCeEEEEc--------------------CC
Q psy9620 276 VEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY--GWAAVGIH--------------------GD 333 (453)
Q Consensus 276 ~~~~~~~~k~~~l~~ll~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~h--------------------~~ 333 (453)
+.-+....|...+..++... ..++||.+++...|..++..|... .-.|..+- ..
T Consensus 37 l~g~~gs~k~~~~a~~~~~~----~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~ 112 (661)
T 2d7d_A 37 LLGATGTGKTFTVSNLIKEV----NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKD 112 (661)
T ss_dssp EEECTTSCHHHHHHHHHHHH----CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCE
T ss_pred EECcCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhh
Confidence 33444555655555565543 458999999999999999999875 22343332 22
Q ss_pred C--C---HHHHHHHHHHHhcCCCcEEEEeccCccCCCCCC----CcEEEEcCCCCChhHHHHh
Q psy9620 334 K--S---QQERDYVLKEFRNGRAGILVATDVAARGLDVDD----VKFVINFDYPNNSEDYIHR 387 (453)
Q Consensus 334 ~--~---~~~r~~~~~~f~~g~~~vLvaT~~~~~GiDip~----v~~VI~~d~p~s~~~y~qr 387 (453)
. + ..+|..++..+.+++-.|||+|-.+-.++=.|. ..+.+..+-..+.+.+.++
T Consensus 113 ~~~~~~i~~~Rl~~l~~L~~~~~~ivV~sv~al~~l~~~~~~~~~~~~l~~G~~~~~~~l~~~ 175 (661)
T 2d7d_A 113 ASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRK 175 (661)
T ss_dssp EEECHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCBCCHHHHHHHCEEEETTCBCCHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhCCCeEEEecHHHHcCCCCHHHHHhccEEEeCCCEeCHHHHHHH
Confidence 2 1 568899999998776668888765545543221 2244555555555555444
No 401
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=46.89 E-value=17 Score=32.42 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=38.0
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCC----eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGW----AAVGIHGDKSQQERDYVLKEFRNGRAGILVATD 358 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~----~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~ 358 (453)
...++||.|+++.-++.+.+.|..... .+..++++....+ -.....+|+|+|.
T Consensus 156 ~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 345899999999999999999887643 4566776654322 1125678999996
No 402
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=46.64 E-value=4.9 Score=33.37 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=12.9
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-+.+++++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568899999999654
No 403
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=46.61 E-value=65 Score=28.39 Aligned_cols=60 Identities=12% Similarity=0.281 Sum_probs=44.0
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHH-HHHHHHh--cCCCcEEEEec
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERD-YVLKEFR--NGRAGILVATD 358 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~-~~~~~f~--~g~~~vLvaT~ 358 (453)
...++++.-.+.+.++++++.+...+..+..+..|++..+-. .+++... -|.++|||..-
T Consensus 30 ~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 30 NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 356777777778888999999999898999999998755432 2222222 28999999764
No 404
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=46.44 E-value=6.5 Score=34.16 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.2
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|.-+.+.+|.|||||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999953
No 405
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=46.15 E-value=14 Score=29.15 Aligned_cols=37 Identities=19% Similarity=0.446 Sum_probs=31.8
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCC-eEEEEcCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKS 335 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~ 335 (453)
+..+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 456899999998889999999999998 5888999854
No 406
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=45.98 E-value=6.2 Score=35.60 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|.-+.+.+|+|||||..
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999964
No 407
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=45.92 E-value=6.4 Score=34.36 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.5
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|+-+.+.+|+|||||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577888999999999953
No 408
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=45.87 E-value=8.7 Score=31.90 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=14.1
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
.-++++++.|||||...
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999764
No 409
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=45.83 E-value=8.6 Score=33.03 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=14.0
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
..+.+.+++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999754
No 410
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=45.71 E-value=11 Score=35.64 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=13.8
Q ss_pred cEEEEecCCCcchhhhh
Q psy9620 152 NMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 152 d~li~a~TGsGKT~~~~ 168 (453)
-.+++++||+|||....
T Consensus 27 l~vi~G~NGaGKT~ile 43 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFE 43 (371)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 35789999999997643
No 411
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=45.71 E-value=9 Score=37.15 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=15.5
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
.+++++.+|+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999654
No 412
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=45.45 E-value=21 Score=27.87 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=31.1
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCC-eEEEEcCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKS 335 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~ 335 (453)
+..+++|||.+=..+...+..|...|+ ++..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 356899999998888889999999998 4878888873
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=45.29 E-value=9.2 Score=33.22 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.1
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
...+++.++.|||||...
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999754
No 414
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=45.22 E-value=9.6 Score=31.59 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=13.3
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-++++++.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999654
No 415
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=44.97 E-value=7.1 Score=38.31 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=14.8
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
+.+++++|+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999754
No 416
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=44.94 E-value=9.7 Score=31.55 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=13.5
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-++++++.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 417
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=44.82 E-value=9.6 Score=32.91 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=14.8
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
...+++++++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356889999999999754
No 418
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=44.79 E-value=18 Score=37.28 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=39.6
Q ss_pred eecccCCCccccccccC-CCHHHHHHHHHCCCC----CCCHHHHHHHHHHh---cCCcEEEEecCCCcchhhhhH
Q psy9620 103 TLKGNAPNPITEFAEAN-FPDYVLKEVKRQGFD----RPTPIQAQGWPIAM---SGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 103 ~~~~~~p~p~~~f~~~~-l~~~l~~~l~~~g~~----~~~~~Q~~~i~~i~---~g~d~li~a~TGsGKT~~~~l 169 (453)
+-.|.+--.+..|..++ ..+..++.++..... +++.+=..|+..++ ..+.+||.+.+|+|||.+.-+
T Consensus 39 Ty~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~ 113 (697)
T 1lkx_A 39 TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKK 113 (697)
T ss_dssp EESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHH
T ss_pred EeeCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHH
Confidence 44565333334444454 356666665443222 33445556666655 356799999999999988543
No 419
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=44.56 E-value=9.3 Score=32.58 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.4
Q ss_pred EEEEecCCCcchhhhh
Q psy9620 153 MVGVAQTGSGKTLAYM 168 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~ 168 (453)
++++++.|||||...-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997643
No 420
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=44.37 E-value=9.1 Score=38.30 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=16.2
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.+..+++.+|+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999654
No 421
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=44.21 E-value=7 Score=35.04 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|+-+.+++|+|||||..
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577788999999999964
No 422
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=44.19 E-value=14 Score=28.92 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=31.7
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCe-EEEEcCCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKS 335 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~~ 335 (453)
...+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3568999999988888999999999985 888998754
No 423
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=44.08 E-value=8.9 Score=40.29 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=32.9
Q ss_pred ccccccccCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCcEEEEecCCCcchhhh
Q psy9620 111 PITEFAEANFPDYVLKEVKRQ-GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 111 p~~~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 167 (453)
|-.+|++.+.-+.+.+.|++. -+....|.+-.-+ -+...+.+|+.+|.|+|||+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 446788887777888877765 1211111110000 0112457999999999999653
No 424
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=43.87 E-value=7.8 Score=34.57 Aligned_cols=58 Identities=7% Similarity=0.083 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCeEEEE---cCCCCHHHHHHHHHHHhc--CCCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 314 DKITKSIQNYGWAAVGI---HGDKSQQERDYVLKEFRN--GRAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 314 ~~l~~~L~~~~~~~~~~---h~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
-.++..|.. .-.+..+ .+.++...+..+++.++. ....||++|-.... +. .++.|+..
T Consensus 164 v~lAraL~~-~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~-~~--~~d~i~~l 226 (260)
T 2ghi_A 164 IAIARCLLK-DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST-IS--SAESIILL 226 (260)
T ss_dssp HHHHHHHHH-CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG-ST--TCSEEEEE
T ss_pred HHHHHHHHc-CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH-HH--hCCEEEEE
Confidence 344555543 2344444 567888888776665542 23567888876553 33 35666554
No 425
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=43.84 E-value=7.7 Score=34.31 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=15.6
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|+-+.+.+|+|||||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577888999999999964
No 426
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.82 E-value=7.2 Score=34.31 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|.-+.+.+|+|+|||..
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999964
No 427
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=43.80 E-value=7.2 Score=34.73 Aligned_cols=46 Identities=4% Similarity=0.014 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCeEEEE---cCCCCHHHHHHHHHHHh---cCCCcEEEEeccCc
Q psy9620 315 KITKSIQNYGWAAVGI---HGDKSQQERDYVLKEFR---NGRAGILVATDVAA 361 (453)
Q Consensus 315 ~l~~~L~~~~~~~~~~---h~~~~~~~r~~~~~~f~---~g~~~vLvaT~~~~ 361 (453)
.++..|.. .-.+..+ .++++...+..+++.++ .....||++|-.+.
T Consensus 163 ~iAraL~~-~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 214 (257)
T 1g6h_A 163 EIGRALMT-NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214 (257)
T ss_dssp HHHHHHHT-CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred HHHHHHHc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 44444443 3455555 56788888887766654 22456788776544
No 428
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=43.68 E-value=8.9 Score=34.35 Aligned_cols=48 Identities=8% Similarity=0.039 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCeEEEE---cCCCCHHHHHHHHHHHhc---CCCcEEEEeccCc
Q psy9620 313 VDKITKSIQNYGWAAVGI---HGDKSQQERDYVLKEFRN---GRAGILVATDVAA 361 (453)
Q Consensus 313 ~~~l~~~L~~~~~~~~~~---h~~~~~~~r~~~~~~f~~---g~~~vLvaT~~~~ 361 (453)
--.++..|.. .-.+..+ .++++...+..+++.++. ....||++|-...
T Consensus 172 Rv~iAraL~~-~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 172 RNDILQMAVL-EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp HHHHHHHHHH-CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred HHHHHHHHHh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 3445555543 3455555 567899999888887764 2356888886544
No 429
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=43.48 E-value=9.9 Score=32.43 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=13.4
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
.++++++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999754
No 430
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=43.47 E-value=7.5 Score=34.75 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.2
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|.-+.+.+|+|||||..
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999964
No 431
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=43.44 E-value=17 Score=33.49 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=14.6
Q ss_pred CCcEEEEecCCCcchhhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~ 168 (453)
++-+++++++|+|||.+..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457788999999997643
No 432
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=43.38 E-value=11 Score=30.63 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.1
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
+.++++++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35789999999999754
No 433
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=43.15 E-value=9.4 Score=31.47 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=15.2
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.+.-++++++.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556789999999999653
No 434
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=43.10 E-value=9 Score=33.90 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCeEEEE---cCCCCHHHHHHHHHHHh---cCCCcEEEEeccCc
Q psy9620 312 KVDKITKSIQNYGWAAVGI---HGDKSQQERDYVLKEFR---NGRAGILVATDVAA 361 (453)
Q Consensus 312 ~~~~l~~~L~~~~~~~~~~---h~~~~~~~r~~~~~~f~---~g~~~vLvaT~~~~ 361 (453)
+--.++..|.. .-.+..+ .++++...+..+++.++ .....||++|-...
T Consensus 150 Qrv~iAraL~~-~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 150 KRNEILQLLVL-EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp HHHHHHHHHHH-CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred HHHHHHHHHHc-CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 33345555544 3455555 46788888887776664 33456888886544
No 435
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=43.04 E-value=9.7 Score=32.00 Aligned_cols=19 Identities=32% Similarity=0.240 Sum_probs=15.5
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.+.-++++++.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3566889999999999653
No 436
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=42.97 E-value=8.4 Score=31.39 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=15.1
Q ss_pred hcCCcEEEEecCCCcchhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~ 166 (453)
..|.-+.+.+|.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566678999999999954
No 437
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=42.90 E-value=12 Score=30.87 Aligned_cols=17 Identities=35% Similarity=0.313 Sum_probs=14.1
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
..++++++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35789999999999764
No 438
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=42.81 E-value=9.2 Score=34.99 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.0
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.+.-+.+++|+|+|||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456779999999999754
No 439
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=42.79 E-value=8.5 Score=46.11 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=17.3
Q ss_pred hcCCcEEEEecCCCcchhhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~ 167 (453)
..++.+|++||||+|||..+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 36899999999999999654
No 440
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=42.69 E-value=15 Score=33.31 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.0
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
+++++||+|+|||...
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999654
No 441
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=42.67 E-value=12 Score=31.85 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=13.2
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-.+|++|+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4578899999999664
No 442
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=42.60 E-value=45 Score=31.73 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=21.9
Q ss_pred HHHHHHHHHh---cCCcEEEEecCCCcchhhh
Q psy9620 139 IQAQGWPIAM---SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 139 ~Q~~~i~~i~---~g~d~li~a~TGsGKT~~~ 167 (453)
.=..+|..++ .|+.+.+.+++|+|||...
T Consensus 160 tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 160 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp HHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred ccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 3345555544 6899999999999999654
No 443
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=42.36 E-value=11 Score=31.71 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=13.2
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
.+.++++.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678999999999653
No 444
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=42.36 E-value=8 Score=34.44 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|.-+.+.+|+|||||..
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 577788999999999964
No 445
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=42.08 E-value=8 Score=34.74 Aligned_cols=48 Identities=6% Similarity=0.020 Sum_probs=28.2
Q ss_pred CeEEEE---cCCCCHHHHHHHHHHHhcC----CCcEEEEeccCccCCCCCCCcEEEEc
Q psy9620 325 WAAVGI---HGDKSQQERDYVLKEFRNG----RAGILVATDVAARGLDVDDVKFVINF 375 (453)
Q Consensus 325 ~~~~~~---h~~~~~~~r~~~~~~f~~g----~~~vLvaT~~~~~GiDip~v~~VI~~ 375 (453)
-.+..+ .+.++...+..+++.++.= ...||++|-.+.. +. .++.|+..
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~~--~~d~v~~l 229 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-AE--RAHHILFL 229 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-HT--TCSEEEEE
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HH--hCCEEEEE
Confidence 344444 5678888888887777531 3457777765443 22 24555543
No 446
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=42.06 E-value=1e+02 Score=22.68 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=35.0
Q ss_pred CCcEEEEEc------chhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHH
Q psy9620 300 ENKTIIFAE------TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEF 346 (453)
Q Consensus 300 ~~~~lVF~~------s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 346 (453)
..+++||.. +.-.|..+...|...++....+.=+.++..+..+.+..
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 347888887 56689999999999999888777666666565555443
No 447
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=42.01 E-value=15 Score=38.47 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=16.2
Q ss_pred CCcEEEEecCCCcchhhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~~ 168 (453)
..++|+++|+|+|||....
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999997653
No 448
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=41.98 E-value=68 Score=26.14 Aligned_cols=73 Identities=10% Similarity=0.124 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC---CcEEEEeccCccCCCCCCCcEEEEcCC-CCChhHHH
Q psy9620 310 KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR---AGILVATDVAARGLDVDDVKFVINFDY-PNNSEDYI 385 (453)
Q Consensus 310 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vLvaT~~~~~GiDip~v~~VI~~d~-p~s~~~y~ 385 (453)
..+++.|.+.|...++.|. +|.+++..+-..+++.|..-. ...+|+. +++.|.. ..|+-.|- +-++.+.+
T Consensus 54 ~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~dh~~~dc~vv~-ilSHG~~----g~i~g~D~~~v~i~~i~ 127 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQLMDHSNMDCFICC-ILSHGDK----GIIYGTDGQEAPIYELT 127 (164)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHSCCTTCSCEEEE-EESCEET----TEEECTTSCEEEHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHhhccCCCEEEEE-eCCCCCC----CEEEeeCCCEeeHHHHH
Confidence 5778999999999999985 567789999999999996432 3333222 5566643 45554553 34455555
Q ss_pred Hhh
Q psy9620 386 HRI 388 (453)
Q Consensus 386 qr~ 388 (453)
..+
T Consensus 128 ~~F 130 (164)
T 1qtn_A 128 SQF 130 (164)
T ss_dssp GGG
T ss_pred HHh
Confidence 544
No 449
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=41.94 E-value=1.5e+02 Score=24.50 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=27.6
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCc
Q psy9620 186 GPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGA 224 (453)
Q Consensus 186 ~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~ 224 (453)
++++||.|++++-+..+.+.+... ++.+..++|+.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~ 88 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGK 88 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCC
Confidence 346999999999999999998876 35666666654
No 450
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=41.89 E-value=20 Score=32.18 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=43.5
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
+.+-+|||.++..+++.|.+.|...|+.|. +|.+++..+-..++++|...
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQ-KFLHLSMHGISQILGQFACM 91 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEE-EEESCBHHHHHHHHHHHHTC
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHhc
Confidence 345789999999999999999999999876 45679999999999999753
No 451
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=41.84 E-value=9 Score=32.29 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=13.4
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
-++++++.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999654
No 452
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=41.82 E-value=23 Score=38.26 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=39.8
Q ss_pred eecccCCCccccccccC-CCHHHHHHHHHCCCCC----CCHHHHHHHHHHh---cCCcEEEEecCCCcchhhhhH
Q psy9620 103 TLKGNAPNPITEFAEAN-FPDYVLKEVKRQGFDR----PTPIQAQGWPIAM---SGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 103 ~~~~~~p~p~~~f~~~~-l~~~l~~~l~~~g~~~----~~~~Q~~~i~~i~---~g~d~li~a~TGsGKT~~~~l 169 (453)
+..|.+--.+.+|..++ ..+.+++.++...... ++.+=..|+..++ ..+.+||++.+|+|||.+.-+
T Consensus 117 Ty~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~ 191 (1010)
T 1g8x_A 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKK 191 (1010)
T ss_dssp EEETTEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHH
T ss_pred eccCceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHH
Confidence 34565323333444444 4566777665543332 2344455665555 356799999999999988544
No 453
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=41.78 E-value=99 Score=22.49 Aligned_cols=55 Identities=9% Similarity=-0.029 Sum_probs=37.1
Q ss_pred CCcEEEEE------cchhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q psy9620 300 ENKTIIFA------ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGIL 354 (453)
Q Consensus 300 ~~~~lVF~------~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vL 354 (453)
..+++||. +..-.|..+...|...++....+.=+..+..+..+.+.+....++.|
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 34789998 56788999999999988877666655556555555555433333333
No 454
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=41.74 E-value=8.2 Score=34.55 Aligned_cols=37 Identities=3% Similarity=-0.046 Sum_probs=23.3
Q ss_pred CeEEEE---cCCCCHHHHHHHHHHHh---cCCCcEEEEeccCc
Q psy9620 325 WAAVGI---HGDKSQQERDYVLKEFR---NGRAGILVATDVAA 361 (453)
Q Consensus 325 ~~~~~~---h~~~~~~~r~~~~~~f~---~g~~~vLvaT~~~~ 361 (453)
-.+..+ .++++...+..+++.++ .....||++|-...
T Consensus 157 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~ 199 (266)
T 2yz2_A 157 PDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE 199 (266)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 345554 46788888877766554 23456788876544
No 455
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=41.68 E-value=8.3 Score=34.50 Aligned_cols=18 Identities=33% Similarity=0.518 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|+-+.+.+|.|||||..
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 577788999999999964
No 456
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=41.67 E-value=8.1 Score=34.22 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.3
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|.-+.+.+|.|+|||..
T Consensus 25 ~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577788999999999963
No 457
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=41.64 E-value=22 Score=34.26 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=15.2
Q ss_pred CcEEEEecCCCcchhhhhH
Q psy9620 151 SNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~l 169 (453)
..+++++++|+|||....-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999976543
No 458
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=41.64 E-value=12 Score=33.14 Aligned_cols=19 Identities=16% Similarity=0.150 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.+..+.+.+|+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566889999999999654
No 459
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=41.56 E-value=6.4 Score=36.15 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.7
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|+-+.+++|+|||||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 578889999999999964
No 460
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=41.56 E-value=11 Score=31.68 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=14.2
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
..++++++.|||||...
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999754
No 461
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=41.51 E-value=7.5 Score=34.24 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.3
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|+-+.+.+|+|||||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999964
No 462
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=41.48 E-value=17 Score=37.91 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=39.9
Q ss_pred eecccCCCccccccccC-CCHHHHHHHHHCCC----CCCCHHHHHHHHHHh---cCCcEEEEecCCCcchhhhhH
Q psy9620 103 TLKGNAPNPITEFAEAN-FPDYVLKEVKRQGF----DRPTPIQAQGWPIAM---SGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 103 ~~~~~~p~p~~~f~~~~-l~~~l~~~l~~~g~----~~~~~~Q~~~i~~i~---~g~d~li~a~TGsGKT~~~~l 169 (453)
+-.|.+--.+..|..++ ..+.+++.++.... ++.+.+=..|+..++ ..+.+||.+.+|+|||.+.-+
T Consensus 116 Ty~G~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~ 190 (783)
T 4db1_A 116 TYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKR 190 (783)
T ss_dssp EEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH
T ss_pred EecCceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHH
Confidence 44565322333444444 35666666654322 233455566666655 356799999999999988644
No 463
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=41.19 E-value=11 Score=32.98 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=14.8
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
..-++++++.|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999653
No 464
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=41.15 E-value=12 Score=32.15 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=14.9
Q ss_pred CcEEEEecCCCcchhhhh
Q psy9620 151 SNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~~ 168 (453)
..+++.++.|||||...-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568999999999997543
No 465
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=41.10 E-value=8.4 Score=34.81 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|.-+.+.+|+|||||..
T Consensus 46 ~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577788999999999964
No 466
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=41.09 E-value=8.9 Score=31.58 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=10.8
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+.-++++++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456789999999999764
No 467
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=41.06 E-value=11 Score=31.38 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=15.3
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.+.-++++++.|||||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556889999999999754
No 468
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=41.04 E-value=1.1e+02 Score=25.34 Aligned_cols=83 Identities=13% Similarity=0.224 Sum_probs=53.8
Q ss_pred CCcEEEEEcch--------------hHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC---cEEEEeccCcc
Q psy9620 300 ENKTIIFAETK--------------RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRA---GILVATDVAAR 362 (453)
Q Consensus 300 ~~~~lVF~~s~--------------~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~---~vLvaT~~~~~ 362 (453)
.+.+|||.+.. .+++.|.+.|...++.|..+ -+++..+-..++++|..... ..+|+. +++.
T Consensus 44 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~-~dlt~~em~~~l~~~~~~dh~~~dc~vvv-ilSH 121 (179)
T 3p45_A 44 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVSTVSHADADCFVCV-FLSH 121 (179)
T ss_dssp CCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHTSCCTTBSCEEEE-EESC
T ss_pred cCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHHhhhhcCCCCEEEEE-Eecc
Confidence 45688888753 57999999999999998655 57999999999999975432 222221 3445
Q ss_pred CCCCCCCcEEEEcCCCCChhHHHHhh
Q psy9620 363 GLDVDDVKFVINFDYPNNSEDYIHRI 388 (453)
Q Consensus 363 GiDip~v~~VI~~d~p~s~~~y~qr~ 388 (453)
|.. ..|+-.|-.-++.+.++..
T Consensus 122 G~~----g~I~g~D~~v~l~~I~~~F 143 (179)
T 3p45_A 122 GEG----NHIYAYDAKIEIQTLTGLF 143 (179)
T ss_dssp EET----TEEECSSSEEEHHHHHGGG
T ss_pred CCC----CEEEEECCEEEHHHHHHhc
Confidence 542 3444444334455555444
No 469
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=40.99 E-value=8.4 Score=34.20 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.3
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|.-+.+.+|+|||||..
T Consensus 30 ~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp TTCEEEEECCSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999963
No 470
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=40.76 E-value=12 Score=31.40 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=13.2
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
.+++.++.|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3688999999999653
No 471
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=40.72 E-value=14 Score=36.47 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=28.6
Q ss_pred cCCcEEEEecCCCcchhhhhHHHHHHhhhcCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy9620 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVA 206 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~Ptr~La~q~~~~~ 206 (453)
.|.-+++.|++|+|||...+-.+. .+... .+..|++++-- +-..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~-~~a~~------~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQAL-QWGTA------MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHH-HHTTT------SCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHH-HHHHh------cCCcEEEEecc-CCHHHHHHHH
Confidence 456688999999999965433333 33221 13347776543 2345555544
No 472
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=40.59 E-value=12 Score=31.25 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=13.2
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
.+.+++++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999654
No 473
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=40.57 E-value=25 Score=36.22 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=48.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cCccCCC-CCCCc
Q psy9620 300 ENKTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATD-----VAARGLD-VDDVK 370 (453)
Q Consensus 300 ~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~GiD-ip~v~ 370 (453)
..++|+.+|++.-+.++++.++. .++.+..++|+....++ ..+..+|+|+|+ .+..+.. +.++.
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~ 140 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAVS 140 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhcC
Confidence 56999999999999999998843 37889999998765442 124789999996 2222322 55677
Q ss_pred EEEE
Q psy9620 371 FVIN 374 (453)
Q Consensus 371 ~VI~ 374 (453)
+||.
T Consensus 141 ~vIi 144 (702)
T 2p6r_A 141 CLVV 144 (702)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
No 474
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=40.37 E-value=58 Score=25.97 Aligned_cols=74 Identities=9% Similarity=0.185 Sum_probs=50.0
Q ss_pred chhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC---CcEEEEeccCccCCCCCCCcEEEEcCCCCChhHHH
Q psy9620 309 TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGR---AGILVATDVAARGLDVDDVKFVINFDYPNNSEDYI 385 (453)
Q Consensus 309 s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~y~ 385 (453)
+..+++.|.+.|...++.|. +|.+++..+-..++++|..-. ...+|+ -+++.|.. ..|+-.|-+-++.+.+
T Consensus 39 t~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~dh~~~dc~vv-~ilSHG~~----g~i~g~D~~~~l~~i~ 112 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKEDHSKRSSFVC-VLLSHGEE----GIIFGTNGPVDLKKIT 112 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHSCCTTEEEEEE-EEESCEET----TEEEETTEEEEHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHHhhcCCCCeEEE-EeccCCCC----CEEEEeCCcEeHHHHH
Confidence 45678999999999999975 556789999999999997543 223322 24556652 4555555555566665
Q ss_pred Hhh
Q psy9620 386 HRI 388 (453)
Q Consensus 386 qr~ 388 (453)
...
T Consensus 113 ~~F 115 (146)
T 2dko_A 113 NFF 115 (146)
T ss_dssp HTT
T ss_pred HHh
Confidence 544
No 475
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=40.34 E-value=36 Score=30.36 Aligned_cols=39 Identities=8% Similarity=-0.007 Sum_probs=32.6
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCC-eEEEEcCCCCHH
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKSQQ 337 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~~h~~~~~~ 337 (453)
...+++|||.+=..+...+..|...|+ ++..+.|++..-
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W 268 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 268 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHH
Confidence 456899999998889999999999998 488889987643
No 476
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=40.23 E-value=12 Score=30.23 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=13.3
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
.++++++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3689999999999654
No 477
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=40.09 E-value=23 Score=36.96 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=39.3
Q ss_pred eecccCCCccccccccC-CCHHHHHHHHHCCCC----CCCHHHHHHHHHHh---cCCcEEEEecCCCcchhhhhH
Q psy9620 103 TLKGNAPNPITEFAEAN-FPDYVLKEVKRQGFD----RPTPIQAQGWPIAM---SGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 103 ~~~~~~p~p~~~f~~~~-l~~~l~~~l~~~g~~----~~~~~Q~~~i~~i~---~g~d~li~a~TGsGKT~~~~l 169 (453)
+..|.+--.+..|..++ ..+.+++..+..... +.+.+=..|+..++ ..+.+|+++.+|+|||.+.-+
T Consensus 117 Ty~G~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~ 191 (770)
T 1w9i_A 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKK 191 (770)
T ss_dssp EEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHH
T ss_pred eccCceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHH
Confidence 44555222333444444 456666666544322 33344556666655 356799999999999988644
No 478
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=39.81 E-value=18 Score=33.45 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=14.7
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+.-+.+++|+|+|||...
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 556789999999999653
No 479
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=39.74 E-value=55 Score=27.02 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=26.9
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhcCCCCceEEEEeCCccC
Q psy9620 186 GPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASK 226 (453)
Q Consensus 186 ~~~vlil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~gg~~~ 226 (453)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+.
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~ 82 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQ 82 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC-----
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCH
Confidence 456999999999999999988875 4677888877654
No 480
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=39.63 E-value=13 Score=31.89 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=13.1
Q ss_pred EEEEecCCCcchhhhh
Q psy9620 153 MVGVAQTGSGKTLAYM 168 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~ 168 (453)
+++.+|+||||++.+.
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999996543
No 481
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=39.60 E-value=11 Score=39.51 Aligned_cols=63 Identities=11% Similarity=-0.022 Sum_probs=0.0
Q ss_pred CCCccccccccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-----------cEEEEecCCCcchhhhhHHH
Q psy9620 108 APNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGS-----------NMVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 108 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~-----------d~li~a~TGsGKT~~~~l~~ 171 (453)
+|.+...+++......+.+.+.+. +......-......+...+ ++++++|||+|||..+...+
T Consensus 436 ip~~~~~~~~~~~l~~l~~~l~~~-v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la 509 (758)
T 1r6b_X 436 IPEKSVSQSDRDTLKNLGDRLKML-VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLS 509 (758)
T ss_dssp CCCCCSSSSHHHHHHHHHHHHTTT-SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCccccchhHHHHHHHHHHHHHhh-ccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHH
No 482
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=39.42 E-value=13 Score=31.47 Aligned_cols=15 Identities=33% Similarity=0.215 Sum_probs=12.6
Q ss_pred EEEEecCCCcchhhh
Q psy9620 153 MVGVAQTGSGKTLAY 167 (453)
Q Consensus 153 ~li~a~TGsGKT~~~ 167 (453)
+.+.++.|||||...
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999653
No 483
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=39.41 E-value=14 Score=31.69 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=14.7
Q ss_pred CCcEEEEecCCCcchhhh
Q psy9620 150 GSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 150 g~d~li~a~TGsGKT~~~ 167 (453)
+..+++.++.|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346889999999999754
No 484
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=39.40 E-value=13 Score=31.33 Aligned_cols=17 Identities=24% Similarity=-0.056 Sum_probs=13.7
Q ss_pred CcEEEEecCCCcchhhh
Q psy9620 151 SNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 151 ~d~li~a~TGsGKT~~~ 167 (453)
.-+.+++++|||||...
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 44678899999999654
No 485
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=39.32 E-value=15 Score=30.70 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=12.1
Q ss_pred EEEEecCCCcchhh
Q psy9620 153 MVGVAQTGSGKTLA 166 (453)
Q Consensus 153 ~li~a~TGsGKT~~ 166 (453)
++|.+++|||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 68999999999954
No 486
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=39.15 E-value=13 Score=31.61 Aligned_cols=16 Identities=13% Similarity=0.138 Sum_probs=13.4
Q ss_pred cEEEEecCCCcchhhh
Q psy9620 152 NMVGVAQTGSGKTLAY 167 (453)
Q Consensus 152 d~li~a~TGsGKT~~~ 167 (453)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 487
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=38.81 E-value=10 Score=35.02 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=16.4
Q ss_pred hcCCcEEEEecCCCcchhhhh
Q psy9620 148 MSGSNMVGVAQTGSGKTLAYM 168 (453)
Q Consensus 148 ~~g~d~li~a~TGsGKT~~~~ 168 (453)
..+..+++.+|+|+|||...+
T Consensus 121 ~~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHH
Confidence 355677999999999996543
No 488
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=38.71 E-value=62 Score=28.86 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=40.0
Q ss_pred CcEEEEEcc-------------hhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 301 NKTIIFAET-------------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 301 ~~~lVF~~s-------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
+-+|||.+. ..+++.|++.|+..|+.|. ++.+++..+-.+++++|..-
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 357777764 6789999999999999975 55689999999999999754
No 489
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=38.70 E-value=10 Score=34.46 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCcchhh
Q psy9620 149 SGSNMVGVAQTGSGKTLA 166 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~ 166 (453)
.|+-+.+.+|+|+|||..
T Consensus 63 ~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577788999999999964
No 490
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=38.53 E-value=13 Score=30.99 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=16.1
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.|+-++++++.|+|||..+
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 4677999999999999654
No 491
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=38.48 E-value=24 Score=38.07 Aligned_cols=68 Identities=10% Similarity=0.174 Sum_probs=40.2
Q ss_pred CeecccCCCccccccccC-CCHHHHHHHHHCCCC----CCCHHHHHHHHHHh---cCCcEEEEecCCCcchhhhhH
Q psy9620 102 MTLKGNAPNPITEFAEAN-FPDYVLKEVKRQGFD----RPTPIQAQGWPIAM---SGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 102 ~~~~~~~p~p~~~f~~~~-l~~~l~~~l~~~g~~----~~~~~Q~~~i~~i~---~g~d~li~a~TGsGKT~~~~l 169 (453)
.+..|.+--.+.+|..++ ..+.+++.++..... +.+.+=..|+..++ ..+.+||++.+|+|||.+.-+
T Consensus 90 YTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~ 165 (995)
T 2ycu_A 90 YTYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKK 165 (995)
T ss_dssp EEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHH
T ss_pred eeecCceeeeeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHH
Confidence 344565333333444444 456666666544322 33345556666555 356799999999999988543
No 492
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=38.36 E-value=20 Score=37.74 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=39.5
Q ss_pred eecccCCCccccccccC-CCHHHHHHHHHCCCC----CCCHHHHHHHHHHh---cCCcEEEEecCCCcchhhhhH
Q psy9620 103 TLKGNAPNPITEFAEAN-FPDYVLKEVKRQGFD----RPTPIQAQGWPIAM---SGSNMVGVAQTGSGKTLAYML 169 (453)
Q Consensus 103 ~~~~~~p~p~~~f~~~~-l~~~l~~~l~~~g~~----~~~~~Q~~~i~~i~---~g~d~li~a~TGsGKT~~~~l 169 (453)
+-.|.+--.+.+|..++ ..+.+++.++..... +.+.+=..|+..++ ..+.+||.+.+|+|||.+.-+
T Consensus 114 Ty~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~ 188 (837)
T 1kk8_A 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKK 188 (837)
T ss_dssp EEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHH
T ss_pred eeccceeEEeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHH
Confidence 44565323333444444 356666666544322 33345556666555 346799999999999988644
No 493
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=38.25 E-value=70 Score=29.18 Aligned_cols=49 Identities=14% Similarity=0.311 Sum_probs=41.0
Q ss_pred CCcEEEEEcc-------------hhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy9620 300 ENKTIIFAET-------------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG 349 (453)
Q Consensus 300 ~~~~lVF~~s-------------~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 349 (453)
.+-+|||.+. ..+++.|.+.|+..|+.|. ++-+++..+-..++++|..-
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHSS
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHh
Confidence 4568888875 6789999999999999975 55679999999999999753
No 494
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=38.09 E-value=15 Score=30.97 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=15.6
Q ss_pred cCCcEEEEecCCCcchhhh
Q psy9620 149 SGSNMVGVAQTGSGKTLAY 167 (453)
Q Consensus 149 ~g~d~li~a~TGsGKT~~~ 167 (453)
.+.-++++++.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4566889999999999754
No 495
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=38.06 E-value=21 Score=28.28 Aligned_cols=36 Identities=6% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCCcEEEEEcchhHHHHHHHHHHhcCCe-EEEEcCCC
Q psy9620 299 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDK 334 (453)
Q Consensus 299 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~h~~~ 334 (453)
...+++|||.+-..+...+..|...|+. +..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
No 496
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=38.01 E-value=31 Score=33.47 Aligned_cols=80 Identities=10% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHhhhcCCCC-cEEEEEcchhHHHHHHHHHHh-----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccCc
Q psy9620 288 LFGLLNDISSKDEN-KTIIFAETKRKVDKITKSIQN-----YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAA 361 (453)
Q Consensus 288 l~~ll~~~~~~~~~-~~lVF~~s~~~~~~l~~~L~~-----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 361 (453)
++.++..+...... ++||.+|++.-+.++++.+.. .++.+....+........ ....+|+|+|.-.-
T Consensus 149 ~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~Ivv~Tp~~l 221 (479)
T 3fmp_B 149 VLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTV 221 (479)
T ss_dssp HHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHH
T ss_pred HHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc-------cCCCCEEEECchHH
Q ss_pred -------cCCCCCCCcEEEE
Q psy9620 362 -------RGLDVDDVKFVIN 374 (453)
Q Consensus 362 -------~GiDip~v~~VI~ 374 (453)
..+++.++.+||.
T Consensus 222 ~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 222 LDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp HHHHTTSCCCCGGGCCEEEE
T ss_pred HHHHHhcCCcCcccCCEEEE
No 497
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=38.01 E-value=11 Score=33.44 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=0.0
Q ss_pred EEEEecCCCcchhhh
Q psy9620 153 MVGVAQTGSGKTLAY 167 (453)
Q Consensus 153 ~li~a~TGsGKT~~~ 167 (453)
++++|+.|||||...
T Consensus 7 Ivl~G~pGSGKSTla 21 (260)
T 3a4m_A 7 IILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCCHHHHH
No 498
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=37.94 E-value=14 Score=31.90 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=0.0
Q ss_pred EEEEecCCCcchhhhhHHH
Q psy9620 153 MVGVAQTGSGKTLAYMLPA 171 (453)
Q Consensus 153 ~li~a~TGsGKT~~~~l~~ 171 (453)
+++.+|+||||++.....+
T Consensus 32 I~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEECCTTCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 499
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=37.89 E-value=11 Score=31.32 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=0.0
Q ss_pred EEEEecCCCcchhhh
Q psy9620 153 MVGVAQTGSGKTLAY 167 (453)
Q Consensus 153 ~li~a~TGsGKT~~~ 167 (453)
+++.++.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 500
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=37.85 E-value=1e+02 Score=27.55 Aligned_cols=81 Identities=11% Similarity=0.185 Sum_probs=0.0
Q ss_pred EEEEEc--------------chhHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC--CCcEEEEeccCccCCCC
Q psy9620 303 TIIFAE--------------TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNG--RAGILVATDVAARGLDV 366 (453)
Q Consensus 303 ~lVF~~--------------s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vLvaT~~~~~GiDi 366 (453)
+|||.+ +..+++.|.+.|+..|+. +.++.+++..+-..++++|..- .-.=.+.--+++.|..
T Consensus 47 aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~-V~~~~dlt~~em~~~l~~f~~~dh~~~d~~vv~ilSHG~~- 124 (277)
T 4ehd_A 47 CIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYE-VRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEE- 124 (277)
T ss_dssp EEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCE-EEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEET-
T ss_pred EEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEecCCCHHHHHHHHHHHHhhcccCCCEEEEEEEcCCCC-
Q ss_pred CCCcEEEEcCCCCChhHHHHhh
Q psy9620 367 DDVKFVINFDYPNNSEDYIHRI 388 (453)
Q Consensus 367 p~v~~VI~~d~p~s~~~y~qr~ 388 (453)
..|+-.|-+-++++.++..
T Consensus 125 ---g~i~g~D~~v~l~~I~~~f 143 (277)
T 4ehd_A 125 ---GIIFGTNGPVDLKKITNFF 143 (277)
T ss_dssp ---TEEEETTEEEEHHHHHHTT
T ss_pred ---CEEEEeCCcEeHHHHHHHh
Done!