RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9620
(453 letters)
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 127 bits (320), Expect = 1e-34
Identities = 27/167 (16%), Positives = 59/167 (35%), Gaps = 19/167 (11%)
Query: 272 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH 331
++ V +V E + L +L + + II+A T + ++I +S++N
Sbjct: 1 VRNVEDVAVNDESISTLSSILEKLGTG----GIIYARTGEEAEEIYESLKN------KFR 50
Query: 332 GDKSQQERDYVLKEFRNGRAGILVAT----DVAARGLDV-DDVKFVINFDYPNNSEDYIH 386
+ ++F G L+ T RGLD+ + ++F + P+ +
Sbjct: 51 IGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRV 106
Query: 387 RIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSAL 433
I + +N + + L+ + V L +
Sbjct: 107 TIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKV 153
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 126 bits (319), Expect = 6e-34
Identities = 27/159 (16%), Positives = 46/159 (28%), Gaps = 20/159 (12%)
Query: 262 GSLTLSANH-NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 320
GS+T H NI++V E +G + + +IF +K+K D++ +
Sbjct: 2 GSVT--VPHPNIEEVALST---TGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKL 56
Query: 321 QNYGWAAVGIHGDKSQ----------QERDYVLKEFRNGRAGILVATDVAARGLDVDD-- 368
G AV + L G ++ +
Sbjct: 57 VALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLD 116
Query: 369 -VKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYTFFTQ 406
+ P ++ R GRTGR G
Sbjct: 117 PTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPG 154
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 123 bits (309), Expect = 8e-33
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 10/155 (6%)
Query: 267 SANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN-KTIIFAETKRKVDKITKSIQNYGW 325
A + Q E+ +H K +KL ++ + + +N K I+F + KI + G
Sbjct: 127 KAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 186
Query: 326 AAVGIHGDKSQQERDY--------VLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDY 377
A G S++ +L EF G +LVAT V GLDV +V V+ ++
Sbjct: 187 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP 246
Query: 378 PNNSEDYIHRIGRTGRSDNTGTSYTFFTQQNSRQA 412
++ I R GRTGR G + +A
Sbjct: 247 VPSAIRSIQRRGRTGR-HMPGRVIILMAKGTRDEA 280
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 116 bits (290), Expect = 5e-30
Identities = 44/304 (14%), Positives = 82/304 (26%), Gaps = 56/304 (18%)
Query: 149 SGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARD 208
+ G+GKT Y+ + G L+LAPTR +A +++E R
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAI-------KRGLRTLILAPTRVVAAEMEEALRG 60
Query: 209 FG--SSTYLRSTCVYGGASKGPQPDRQVL--MWSATWPREVQKLAED---FLDSYIQINI 261
T G + S + D F D
Sbjct: 61 LPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAAR 120
Query: 262 GSLTLSANHNIQQVVEVCA-------------------EHEKENKLFGLLNDISSKDENK 302
G ++ + + A E E + + ++ + + K
Sbjct: 121 GYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGK 180
Query: 303 TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAAR 362
T+ F + + + I ++ G + + E + +V TD++
Sbjct: 181 TVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWD----FVVTTDISEM 236
Query: 363 GLDVD---------DVKFVINFDYPNNSE----------DYIHRIGRTGRSDNTGTSYTF 403
G + +K VI D R GR GR+
Sbjct: 237 GANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYI 296
Query: 404 FTQQ 407
+ +
Sbjct: 297 YMGE 300
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 110 bits (275), Expect = 2e-29
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 273 QQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG 332
Q V V E K L L + I + +IF T+RKV+++T ++N + I+
Sbjct: 3 QFYVNVEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYS 59
Query: 333 DKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTG 392
D QQERD ++KEFR+G + IL++TD+ ARG+DV V VIN+D P N E+YIHRIGR G
Sbjct: 60 DLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGG 119
Query: 393 RSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSALAS 435
R G + F T ++ ++L + + ++ L +
Sbjct: 120 RFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLLN 162
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 109 bits (273), Expect = 4e-29
Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 4/151 (2%)
Query: 269 NHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAV 328
N NI+Q E+E+ L LL + E ++F +TKR ++ +++ G+ A
Sbjct: 1 NANIEQSYVEVNENERFEALCRLLKN----KEFYGLVFCKTKRDTKELASMLRDIGFKAG 56
Query: 329 GIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRI 388
IHGD SQ +R+ V++ F+ + IL+ATDV +RG+DV+D+ VIN+ P N E Y+HRI
Sbjct: 57 AIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRI 116
Query: 389 GRTGRSDNTGTSYTFFTQQNSRQAKDLIDVL 419
GRTGR+ G + + ++ ++ + + +
Sbjct: 117 GRTGRAGKKGKAISIINRREYKKLRYIERAM 147
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 102 bits (254), Expect = 2e-25
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 17/232 (7%)
Query: 107 NAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLA 166
+A N I F E + + + RPTPIQ P + +++ AQTGSGKT A
Sbjct: 15 SATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAA 74
Query: 167 YMLPAIVHI----NHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYG 222
+++P I H+ +Q + P L+LAPTRELA QI ++ F +T LRS VYG
Sbjct: 75 FLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYG 134
Query: 223 GASKGPQPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH 282
GA Q R+V M +L I ++L I
Sbjct: 135 GADTHSQI-REVQMGCHLLVATPGRL-------VDFIEKNKISLEFCKYIVLDEADRMLD 186
Query: 283 EK-ENKLFGLLNDIS--SKDENKTIIFAET-KRKVDKITKSI-QNYGWAAVG 329
E ++ ++ + + S +T++F+ T +++ K+ NY + VG
Sbjct: 187 MGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 99.6 bits (247), Expect = 3e-25
Identities = 63/171 (36%), Positives = 95/171 (55%), Gaps = 7/171 (4%)
Query: 264 LTLSANHNIQQ-VVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN 322
LTL I+Q V V E K + L L + + + +IF TKRKVD +T+ ++
Sbjct: 3 LTL---EGIKQFFVAVEREEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMRE 56
Query: 323 YGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSE 382
+ +HGD Q+ER+ ++KEFR+G + +L++TDV ARGLDV V +IN+D PNN E
Sbjct: 57 ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRE 116
Query: 383 DYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKLSAL 433
YIHRIGR+GR G + F + R +D+ + + ++ L
Sbjct: 117 LYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 167
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 90.5 bits (223), Expect = 9e-22
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 5/155 (3%)
Query: 271 NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGI 330
NI+ ++ EK L L+ + + II+ ++ KV+ +Q+ G +A
Sbjct: 6 NIRYML-----MEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAY 60
Query: 331 HGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGR 390
H R V ++F+ I+VAT G++ +V+FV++FD P N E Y GR
Sbjct: 61 HAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGR 120
Query: 391 TGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHP 425
GR + F+ + + ++ +
Sbjct: 121 AGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQ 155
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 88.9 bits (219), Expect = 2e-21
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 11/162 (6%)
Query: 264 LTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY 323
LTL +NI+Q +C +++K L N S + IIF +T+R +T +
Sbjct: 1 LTL---NNIRQYYVLCEH--RKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD 55
Query: 324 GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNS-- 381
G + G+ + ++R +++ FR+G+ +L+ T+V ARG+DV V V+NFD P
Sbjct: 56 GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGE 115
Query: 382 ----EDYIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVL 419
E Y+HRIGRTGR G ++ + D
Sbjct: 116 EPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHF 157
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 90.3 bits (223), Expect = 2e-21
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 104 LKGNAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGK 163
++ N + F + N + +L+ + GF++P+ IQ + + G +++ AQ+G+GK
Sbjct: 3 IESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGK 62
Query: 164 TLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVY 221
T + + + I + LVLAPTRELAQQIQ+V G
Sbjct: 63 TATFAISILQQIELDLK-----ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACI 115
Score = 52.2 bits (124), Expect = 2e-08
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262
+ QV++ SAT P +V ++ + F+ I+I +
Sbjct: 185 SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 86.5 bits (213), Expect = 3e-20
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 283 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 342
+NK+ L + ++K IIF V +I+K + I S++ER+ +
Sbjct: 76 NSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKV-----FLIPAITHRTSREEREEI 130
Query: 343 LKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSDNTGTSYT 402
L+ FR GR +V++ V G+DV D + ++ +YI R+GR R
Sbjct: 131 LEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAV 190
Query: 403 FFT 405
+
Sbjct: 191 LYE 193
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 86.9 bits (214), Expect = 5e-20
Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 15/154 (9%)
Query: 108 APNPITEFAEANFPDYVLKEVK---RQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKT 164
A + F E D++LKE R+ P IQ + + A TG GKT
Sbjct: 17 AAASLCLFPE----DFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKT 72
Query: 165 LAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGA 224
+ ++ + V+ PT L Q E R + + + + G
Sbjct: 73 SFGLAMSLFLALKGKR--------CYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYY 124
Query: 225 SKGPQPDRQVLMWSATWPREVQKLAEDFLDSYIQ 258
+ ++ FL + +
Sbjct: 125 HGRIPKREKENFMQNLRNFKIVITTTQFLSKHYR 158
Score = 37.6 bits (86), Expect = 0.002
Identities = 6/40 (15%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 228 PQPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLS 267
+ +++ +AT + + L + +IGS ++
Sbjct: 201 GEARGCLMVSTATAKKGKKAELFRQL---LNFDIGSSRIT 237
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 82.4 bits (203), Expect = 2e-19
Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 262 GSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQ 321
GS+T + NI++V E +G + + +IF +K+K D++ +
Sbjct: 1 GSVT-VPHPNIEEVAL---STTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLV 56
Query: 322 NYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDD---VKFVINFDYP 378
G AV + ++VATD G D + + P
Sbjct: 57 ALGINAVAYYRGLDVSV-------IPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKP 109
Query: 379 NNSEDYIHRIGRTGRSDNTGTSYTFFT 405
++ R GRTGR G Y F
Sbjct: 110 QDAVSRTQRRGRTGR-GKPGI-YRFVA 134
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 83.4 bits (205), Expect = 4e-19
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 109 PNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYM 168
+ F + +L+ + GF++P+ IQ + + G +++ +Q+G+GKT +
Sbjct: 13 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 72
Query: 169 LPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVY 221
+ + ++ Q + L+LAPTRELA QIQ+ G ++
Sbjct: 73 ISVLQCLDIQVR-----ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACI 120
Score = 53.7 bits (128), Expect = 7e-09
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262
P QV++ SAT P E+ ++ F+ I+I +
Sbjct: 189 PATQVVLISATLPHEILEMTNKFMTDPIRILVK 221
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 80.9 bits (198), Expect = 1e-18
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 6/167 (3%)
Query: 264 LTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY 323
LTL I Q E +K + L L + + N+ IIF + +V+ + K I +
Sbjct: 2 LTL---KGITQYYAFVEERQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDL 55
Query: 324 GWAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSED 383
G++ H QQER+ V EFR G+ LV +D+ RG+D+ V VINFD+P +E
Sbjct: 56 GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAET 115
Query: 384 YIHRIGRTGRSDNTGTSYTFFTQQNSRQAKDLIDVLTESNHPVDPKL 430
Y+HRIGR+GR + G + + + L + +
Sbjct: 116 YLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 162
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 81.8 bits (201), Expect = 1e-18
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 104 LKGNAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGK 163
++ N + +F + + +L+ V GF+ P+ IQ + + G +++ AQ+G+GK
Sbjct: 1 IQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGK 60
Query: 164 TLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGG 223
T + + A+ I+ + P L+LAPTRELA QIQ+V ++ GG
Sbjct: 61 TGTFSIAALQRIDTSVK-----APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGG 115
Query: 224 ASKGPQPDR 232
S +
Sbjct: 116 TSFVEDAEG 124
Score = 51.0 bits (121), Expect = 6e-08
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261
P QV++ SAT P +V ++ F+ + ++I +
Sbjct: 181 PTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 81.6 bits (200), Expect = 1e-18
Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 9/130 (6%)
Query: 112 ITEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPA 171
+ E AE + Y + +K +G + P QA+ SG N++ T +GKTL +
Sbjct: 3 VEELAE-SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAM 61
Query: 172 IVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQPD 231
+ L + P R LA + E + + S+
Sbjct: 62 VREAIKG--------GKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLG 113
Query: 232 RQVLMWSATW 241
++ + +
Sbjct: 114 DCDIIVTTSE 123
Score = 31.5 bits (70), Expect = 0.16
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 226 KGPQPDRQVLMWSATWPREVQKLAEDFLDSYI 257
+ +V+ SAT P V ++AE +LD+
Sbjct: 167 RRMNKALRVIGLSATAP-NVTEIAE-WLDADY 196
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 79.7 bits (196), Expect = 8e-18
Identities = 44/203 (21%), Positives = 76/203 (37%), Gaps = 58/203 (28%)
Query: 115 FAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSG-SNMVGVAQTGSGKTLAYMLPAIV 173
F E N D +L ++ +GF++PT IQ + P+ ++ N+V A+TGSGKT ++ +P I
Sbjct: 6 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 65
Query: 174 HINHQ-------------------------------------------SQLKPGDGPIVL 190
+N Q+K ++
Sbjct: 66 LVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIV 125
Query: 191 VLAPTRELAQQIQEVARDFGSSTYL------------RSTCVYGGASKGPQPDRQVLMWS 238
V P R + I + + Y V + D+++L++S
Sbjct: 126 VGTPGR-ILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN-KDKRILLFS 183
Query: 239 ATWPREVQKLAEDFLDSYIQINI 261
AT PRE+ LA+ ++ Y I
Sbjct: 184 ATMPREILNLAKKYMGDYSFIKA 206
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 77.1 bits (189), Expect = 3e-17
Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 5/135 (3%)
Query: 275 VVEVCAEHEKENKLFGLLNDISSKDEN--KTIIFAETKRKVDKITKSIQNYGWAAVGIHG 332
++V + ++ L+ +I + E +T++ TK+ + +T ++ G +H
Sbjct: 7 TIDV---RPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHS 63
Query: 333 DKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTG 392
+ ER ++++ R G+ +LV ++ GLD+ +V V D R
Sbjct: 64 EIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 123
Query: 393 RSDNTGTSYTFFTQQ 407
+
Sbjct: 124 IGRAARNANGHVIMY 138
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 75.1 bits (183), Expect = 1e-16
Identities = 44/160 (27%), Positives = 87/160 (54%), Gaps = 4/160 (2%)
Query: 272 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH 331
+QQ ++EK KLF LL+ + + N+ +IF ++ ++ + + + + A+ IH
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIH 58
Query: 332 GDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRT 391
Q+ER ++F++ + ILVAT++ RG+D++ V N+D P +S+ Y+HR+ R
Sbjct: 59 RGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARA 118
Query: 392 GRSDNTGTSYTFFTQQN-SRQAKDLIDVLTESNHPVDPKL 430
GR G + TF + +N ++ D+ D + + ++
Sbjct: 119 GRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 158
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 74.7 bits (183), Expect = 2e-16
Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 10/145 (6%)
Query: 275 VVEVCAEHEKENKLFGLLNDISSKDEN--KTIIFAETKRKVDKITKSIQNYGWAAVGIHG 332
+V V EN++ L+ I + +T++ T R +++T + +G A +H
Sbjct: 7 LVRV---KPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHH 63
Query: 333 DKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVI-----NFDYPNNSEDYIHR 387
+ +R ++++ R G LV ++ GLD+ +V V + + I
Sbjct: 64 ELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 123
Query: 388 IGRTGRSDNTGTSYTFFTQQNSRQA 412
IGR R+ + Q
Sbjct: 124 IGRAARNARGEVWLYADRVSEAMQR 148
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 75.3 bits (184), Expect = 2e-16
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Query: 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAI 172
+ F + +L+ + GF+ P+ +Q + P A+ G +++ A++G GKT ++L +
Sbjct: 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 60
Query: 173 VHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQPDR 232
+ + VLV+ TRELA QI + F V+ G + +
Sbjct: 61 QQLEPVTG-----QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE 115
Query: 233 QVLMWSATW 241
+
Sbjct: 116 VLKKNCPHI 124
Score = 52.6 bits (125), Expect = 2e-08
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261
++QV+M+SAT +E++ + F+ ++I +
Sbjct: 176 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 75.4 bits (184), Expect = 2e-16
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAI 172
EF + +L + G+++P+PIQ + PIA+SG +++ A+ G+GK+ AY++P +
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 173 VHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQPDR 232
++ + +V+ PTRELA Q+ ++ G +
Sbjct: 63 ERLDLKKD-----NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117
Query: 233 QVLMW 237
++
Sbjct: 118 RLDDT 122
Score = 52.7 bits (125), Expect = 1e-08
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQIN 260
+RQ+L++SAT+P VQK L+ +IN
Sbjct: 176 KNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 72.4 bits (176), Expect = 3e-15
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 113 TEFAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAI 172
T+F F ++++ +K F +PT IQ + P A+ G +MVG +QTG+GKT AY+LP I
Sbjct: 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLP-I 59
Query: 173 VHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYG 222
+ + + ++ + ++ + + + C+ G
Sbjct: 60 MEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIG 109
Score = 54.7 bits (130), Expect = 3e-09
Identities = 7/32 (21%), Positives = 21/32 (65%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 261
D Q+L++SAT P +++ + ++++ +++
Sbjct: 177 KDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 68.1 bits (165), Expect = 8e-14
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 115 FAEANFPDYVLKEVKRQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVH 174
F + +L + GF++P+PIQ + P+A++G +++ A+ G+GKT A+++P +
Sbjct: 3 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 62
Query: 175 INHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYG 222
+ + L++ PTRELA Q +V R G + G
Sbjct: 63 VKPKLN-----KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTG 105
Score = 55.0 bits (131), Expect = 2e-09
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 262
P Q L++SAT+P V++ L +IN+
Sbjct: 173 PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 62.7 bits (151), Expect = 4e-12
Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Query: 112 ITEFAEANFPDYVLKEVKRQ-GFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLP 170
+ + N + ++ G+ + P Q + +SG + + V TG GK+L Y +P
Sbjct: 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP 60
Query: 171 AIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGG 223
A++ + +V++P L + + + G + ++
Sbjct: 61 ALLLN-----------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTRE 102
Score = 36.9 bits (84), Expect = 0.003
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 230 PDRQVLMWSATWPREVQKLAEDFL---DSYIQIN 260
P + +AT ++ L D IQI+
Sbjct: 173 PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS 206
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 59.5 bits (143), Expect = 5e-11
Identities = 26/180 (14%), Positives = 55/180 (30%), Gaps = 40/180 (22%)
Query: 274 QVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG--------- 324
++ + + K L+ + +++ ++F T+R +K +
Sbjct: 15 ELFDGAFSTSRRVKFEELVEECVAENG-GVLVFESTRRGAEKTAVKLSAITAKYVENEGL 73
Query: 325 ---------------------WAAVGIHGDKSQQERDYVLKEFRNGRAGILVATDVAARG 363
A H +R V FR G ++VAT A G
Sbjct: 74 EKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAG 133
Query: 364 LDVDDVKFVI-------NFDYPNNSEDYIHRIGRTGRS--DNTGTSYTFFTQQNSRQAKD 414
+++ + ++ + +Y GR GR D G + +++ A
Sbjct: 134 VNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVK 193
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 58.7 bits (141), Expect = 1e-10
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 6/143 (4%)
Query: 271 NIQQVVE-VCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVG 329
+ +V E V E + + F + I D+ E + K G
Sbjct: 14 RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGL---- 69
Query: 330 IHGDKSQQERDYVLKEFRNGRAGILVATDVAARGLDVDDVKFVINFDYPNNSEDYIHR-I 388
+HG SQ+E+D V+ EF GR ILV+T V G+DV ++ + +H+
Sbjct: 70 MHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLR 129
Query: 389 GRTGRSDNTGTSYTFFTQQNSRQ 411
GR GR +
Sbjct: 130 GRVGRGGQEAYCFLVVGDVGEEA 152
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 54.0 bits (128), Expect = 4e-09
Identities = 42/217 (19%), Positives = 68/217 (31%), Gaps = 25/217 (11%)
Query: 130 RQGFDRPTPIQAQGWPIAMSGSNMVGVAQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIV 189
R+ +P Q + +N + V TG GKTL M+ A + G V
Sbjct: 4 RRDLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKY-------GGKV 55
Query: 190 LVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGASKGPQ--PDRQVLMWSATWPREVQK 247
L+LAPT+ L Q E R + + + G S + + + AT
Sbjct: 56 LMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIEND 115
Query: 248 LAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIF- 306
L + V + + + + +N +I
Sbjct: 116 LLAGRISL-------------EDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGL 162
Query: 307 -AETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 342
A +KI + I N G + + S R YV
Sbjct: 163 TASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYV 199
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 54.2 bits (130), Expect = 8e-09
Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 24/139 (17%)
Query: 297 SKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKEFRNGRAGILVA 356
D+ T F + R + + S++ G + V ++ ++E + + ++A
Sbjct: 33 LADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILA 88
Query: 357 TDVAARGLDVDDVKFVINFDYPNNSEDY-------------------IHRIGRTGRSDNT 397
TD+A G ++ V+ V++ R GR GR+ N
Sbjct: 89 TDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147
Query: 398 GTSYTFFTQQNSRQAKDLI 416
++++ S +
Sbjct: 148 DGDSYYYSEPTSENNAHHV 166
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 46.0 bits (109), Expect = 1e-06
Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
Query: 284 KENKLFGLLNDISSKDEN--KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDY 341
E K + D++ + ++ + I+K ++N G ++ ++E
Sbjct: 16 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQI 75
Query: 342 VLKEFRNGRAGILVATDVAARGLDV---DDVK-----FVINFDYPNNSEDYIHRIGRTGR 393
+ + + G + +AT++A RG D+ + VK V+ + + GR+GR
Sbjct: 76 IEEAGQKGA--VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGR 133
Query: 394 SDNTGTSYTF 403
+ G + +
Sbjct: 134 QGDPGITQFY 143
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 41.5 bits (96), Expect = 1e-04
Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 284 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 343
K L +L + +K ++ + + +D K +N + V + G S ++R ++
Sbjct: 102 KMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIV 161
Query: 344 KEFRNG---RAGILVATDVAARGLDVDDVKFVINFDYPNN------SEDYIHRIGRT 391
+ F N ++++ GL++ ++ FD N + + R G+
Sbjct: 162 ERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQK 218
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 38.7 bits (89), Expect = 3e-04
Identities = 19/108 (17%), Positives = 27/108 (25%), Gaps = 16/108 (14%)
Query: 145 PIAMSGSNMVGV--AQTGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQI 202
P A+ S V A TGSGK+ +PA G VLVL P+
Sbjct: 1 PPAVPQSFQVAHLHAPTGSGKST--KVPAAYA---------AQGYKVLVLNPSVAATLG- 48
Query: 203 QEVARDFGSSTYLRSTCVYGGASKGPQPDRQVLMWSATWPREVQKLAE 250
+ + G + +
Sbjct: 49 --FGAYMSKAHGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGA 94
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 32.0 bits (71), Expect = 0.061
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 150 GSNMVGVAQTGSGKTLAYMLPAIVHINHQ 178
G V G+GKT ++ + +
Sbjct: 7 GMTTVLDFHPGAGKTRRFLPQILAECARR 35
>d2mpra_ f.4.3.2 (A:) Maltoporin (also LamB protein) {Salmonella
typhimurium [TaxId: 90371]}
Length = 427
Score = 32.0 bits (72), Expect = 0.16
Identities = 11/69 (15%), Positives = 18/69 (26%)
Query: 8 GGSSRGTSRYGTSGGGGYGGSSRSGGYGGGYGGGSGGGRFGDRGGRGKNSTMGGALRAID 67
G ++ +Y T G G G + G R +D
Sbjct: 225 KGYNKFVVQYATDAMTTQGKGQARGSDGSSSFTEELSDGTKINYANKVINNNGNMWRILD 284
Query: 68 WGNLPPFEK 76
G + +K
Sbjct: 285 HGAISLGDK 293
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 28.7 bits (63), Expect = 1.7
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Query: 159 TGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209
TG+GKT+ + + +P LVLAP + LA Q+ R+
Sbjct: 37 TGTGKTVT-----MAKVIEALG-RP-----ALVLAPNKILAAQLAAEFREL 76
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 28.6 bits (63), Expect = 1.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 159 TGSGKTLAYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDF 209
TG+GKT I ++ Q KP LV+A + LA Q+ ++F
Sbjct: 40 TGTGKTFT-----ISNVIAQVN-KP-----TLVIAHNKTLAGQLYSELKEF 79
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
{Methylobacterium extorquens [TaxId: 408]}
Length = 596
Score = 28.4 bits (62), Expect = 2.3
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 24 GYGGSSRSGGYGGGYGGGSGGGRFGDRGGRGKNSTMGGAL 63
G GG G +G G G + MGG +
Sbjct: 536 GVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGV 575
>d1vpta_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia
virus [TaxId: 10245]}
Length = 297
Score = 27.9 bits (62), Expect = 2.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 370 KFVINFDYPNNSEDYIHR 387
K V+NFDYPN DY H
Sbjct: 246 KVVVNFDYPNQEYDYFHM 263
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 180
Score = 27.3 bits (60), Expect = 2.6
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 7 SGGSSRGTSRYGTSGGG--GYGGSSRSGGYGGGYG 39
+G S T+ Y S G G G +S +G G
Sbjct: 12 NGKSCASTTNYHDSHKGACGCGPASGDAQFGWNAG 46
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.0 bits (61), Expect = 2.8
Identities = 10/81 (12%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 126 KEVKRQGFDRPTPIQAQGWPI--AMSGSNMVGVAQTGSGKT--LAYMLPAIVHINHQSQL 181
++KR ++ + G P+ +++ TG+GK+ L + + +
Sbjct: 24 GKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDR--- 80
Query: 182 KPGDGPIVLVLAPTRELAQQI 202
++++ P ++ +
Sbjct: 81 -------MVIVDPNGDMLSKF 94
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p)
{Escherichia coli [TaxId: 562]}
Length = 140
Score = 26.9 bits (59), Expect = 3.3
Identities = 20/105 (19%), Positives = 33/105 (31%)
Query: 37 GYGGGSGGGRFGDRGGRGKNSTMGGALRAIDWGNLPPFEKNFFHPSPSVLNRSPHEVQAF 96
G G GSG G+ G RG +G+ S GG +R G P + + +
Sbjct: 17 GRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRL 76
Query: 97 RDKHQMTLKGNAPNPITEFAEANFPDYVLKEVKRQGFDRPTPIQA 141
D ++ N + K + P ++
Sbjct: 77 SDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRG 121
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 140
Score = 26.5 bits (58), Expect = 4.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 181 LKPGDGPIVLVLAPTRELAQQIQEVAR 207
KP G +LA + +A++++ AR
Sbjct: 106 TKPQLGIREGMLAYSEMIAEKVRTAAR 132
>d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase,
central domain {Lactobacillus brevis [TaxId: 1580]}
Length = 485
Score = 27.4 bits (60), Expect = 4.6
Identities = 11/91 (12%), Positives = 22/91 (24%)
Query: 166 AYMLPAIVHINHQSQLKPGDGPIVLVLAPTRELAQQIQEVARDFGSSTYLRSTCVYGGAS 225
A+ P + I + L AQ+ F T+ C
Sbjct: 94 AFAFPVYLGITDPKVTRNLLMYRYKQLDGAYINAQEQGLKGALFPMVTFDGIECHNEWEI 153
Query: 226 KGPQPDRQVLMWSATWPREVQKLAEDFLDSY 256
+ R + A + + ++
Sbjct: 154 TFEEIHRNGDIAFAIYNYTRYTGDDSYVLHE 184
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 183
Score = 26.6 bits (58), Expect = 4.7
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 215 LRSTCVYGGASKGPQPD 231
R CV+ G+S+G +
Sbjct: 6 FRRICVFCGSSQGKKSS 22
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 181
Score = 26.6 bits (58), Expect = 5.2
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 215 LRSTCVYGGASKGPQP 230
R CV+ G+ G +
Sbjct: 2 FRKICVFCGSHSGHRE 17
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis
[TaxId: 1423]}
Length = 179
Score = 26.3 bits (57), Expect = 7.3
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 215 LRSTCVYGGASKGPQP 230
+++ CV+ G++ G
Sbjct: 1 MKTICVFAGSNPGGNE 16
>d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium
(Salmonella typhimurium) [TaxId: 90371]}
Length = 413
Score = 26.5 bits (58), Expect = 8.0
Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 11/83 (13%)
Query: 2 YKSSSSGGSSRGTSRYGTSGGGGYGGSSRSGGYGG--------GYGGGSGGGRFGDRGGR 53
K S+ + + G G S G G G+G G+ G G
Sbjct: 201 RKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTALLYGHGLGAEVKGIGSDGAL 260
Query: 54 GKNSTMGGALRAIDWGNLPPFEK 76
+ R +G P E
Sbjct: 261 RPGADT---WRIASYGTTPLSEN 280
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.134 0.396
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,679,280
Number of extensions: 78627
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 76
Length of query: 453
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 365
Effective length of database: 1,199,356
Effective search space: 437764940
Effective search space used: 437764940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.9 bits)