BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9621
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 244 bits (622), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 131/221 (59%), Positives = 148/221 (66%), Gaps = 51/221 (23%)
Query: 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
KTYD+LFKLLLIGDSGVGKTCVLFRFS+DAFN+TFISTIGIDFKI+T++L GK+IKLQIW
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
DTAGQERF TITT+YYRGAMGIMLVYDITNEKSFDNI W+RNI+EHA+ DVEKMILG
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
D N+ Q V
Sbjct: 123 CDV----------------------------------------------NDKRQ-----V 131
Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
K RGE +A +YG++FMETSAKANIN+E AF LA I K
Sbjct: 132 SKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 237 bits (605), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 128/218 (58%), Positives = 145/218 (66%), Gaps = 51/218 (23%)
Query: 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
D+LFKLLLIGDSGVGKTCVLFRFS+DAFN+TFISTIGIDFKI+T++L GK+IKLQIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
GQERF TITT+YYRGAMGIMLVYDITNEKSFDNI W+RNI+EHA+ DVEKMILG D
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD- 122
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
N+ Q V K
Sbjct: 123 ---------------------------------------------VNDKRQ-----VSKE 132
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
RGE +A +YG++FMETSAKANIN+E AF LA I K
Sbjct: 133 RGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 137/221 (61%), Gaps = 52/221 (23%)
Query: 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
K+YD + K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KLQ+W
Sbjct: 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 74
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
DTAGQERF TITT+YYRGAMGI+LVYD+T+E++F NI +W + ++EHAN++ + +++G
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 134
Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
D + +VV +
Sbjct: 135 SDM------------------------------------------------ETRVVTA-- 144
Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+GEA+A+E G+ F+E+SAK + N+ + F LA I +K
Sbjct: 145 --DQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 134/218 (61%), Gaps = 52/218 (23%)
Query: 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
D + K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KLQIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
GQERF TITT+YYRGAMGI+LVYDIT+E++F NI +W + ++EHAN++ + +++G D
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
+ +VV +
Sbjct: 121 ------------------------------------------------ETRVVTA----D 128
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+GEA+A+E G+ F+E+SAK + N+ + F LA I +K
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 184 bits (466), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 133/216 (61%), Gaps = 51/216 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFKLLLIGDSGVGK+C+L RF+DD + ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G D
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
++ V D T K F + L
Sbjct: 133 LTTKK------------------VVDYTTAKEFADSL----------------------- 151
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
G+ F+ETSAK N+E++F+ +A I
Sbjct: 152 ----------GIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 132/216 (61%), Gaps = 51/216 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFKLLLIGDSGVGK+C+L RF+DD + ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 22 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 81
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G D
Sbjct: 82 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 141
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
++ V D T K F
Sbjct: 142 LTTKK------------------VVDYTTAKEF--------------------------- 156
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
A G+ F+ETSAK N+E++F+ +A I
Sbjct: 157 ------ADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 132/216 (61%), Gaps = 51/216 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFKLLLIGDSGVGK+C+L RF+DD + ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 3 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G D
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
++ V D T K F
Sbjct: 123 LTTKK------------------VVDYTTAKEF--------------------------- 137
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
A G+ F+ETSAK N+E++F+ +A I
Sbjct: 138 ------ADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 131/216 (60%), Gaps = 51/216 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFKLLLIGDSGVGK+C+L RF+DD + ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF TIT+SYYRGA GI++VYD+T+++S+ N+ +WL+ ID +A+E+V K+++G
Sbjct: 66 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS- 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
D+T +K DN
Sbjct: 125 -------------------------DLTTKKVVDNT------------------------ 135
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
+ A G+ F+ETSAK N+E+AF+ +A I
Sbjct: 136 -TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 131/216 (60%), Gaps = 51/216 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFKLLLIGDSGVGK+C+L RF+DD + ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF TIT+SYYRGA GI++VYD+T+++S+ N+ +WL+ ID +A+E+V K+++G
Sbjct: 66 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS- 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
D+T +K DN
Sbjct: 125 -------------------------DLTTKKVVDNT------------------------ 135
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
+ A G+ F+ETSAK N+E+AF+ +A I
Sbjct: 136 -TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 131/216 (60%), Gaps = 51/216 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFKLLLIGDSGVGK C+L RF+DD + ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 13 YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G D
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
++ V D T K F
Sbjct: 133 LTTKK------------------VVDYTTAKEF--------------------------- 147
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
A G+ F+ETSAK N+E++F+ +A I
Sbjct: 148 ------ADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 132/216 (61%), Gaps = 51/216 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFKLLLIGDSGVGK+C+L RF+DD + ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCD 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
++ V D T K F
Sbjct: 125 LTTKK------------------VVDYTTAKEF--------------------------- 139
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
A G+ F+ETSAK N+E++F+ +A I
Sbjct: 140 ------ADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 133/218 (61%), Gaps = 52/218 (23%)
Query: 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
D + K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KLQIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
GQERF TITT+YYRGA GI+LVYDIT+E++F NI +W + ++EHAN++ + +++G D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
+ +VV +
Sbjct: 121 ------------------------------------------------ETRVVTA----D 128
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+GEA+A+E G+ F+E+SAK + N+ + F LA I +K
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 181 bits (458), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 131/216 (60%), Gaps = 51/216 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD LFKLLLIGDSGVGK+C+L RF+DD + ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 3 YDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G D
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
++ V D T K F
Sbjct: 123 LTTKK------------------VVDYTTAKEF--------------------------- 137
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
A G+ F+ETSAK N+E++F+ +A I
Sbjct: 138 ------ADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 180 bits (457), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 131/216 (60%), Gaps = 51/216 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFKLLLIGDSGVGK+C+L RF+DD + ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 89
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G D
Sbjct: 90 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 149
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
++ V D T K F + L
Sbjct: 150 LTTKK------------------VVDYTTAKEFADSL----------------------- 168
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
G+ F+ETSAK N+E++F A I
Sbjct: 169 ----------GIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 180 bits (457), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 133/218 (61%), Gaps = 52/218 (23%)
Query: 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
D + K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KLQ+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
GQERF TITT+YYRGA GI+LVYD+T+E++F NI +W + ++EHAN++ + +++G D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
+ +VV +
Sbjct: 121 ------------------------------------------------ETRVVTA----D 128
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+GEA+A+E G+ F+E+SAK + N+ + F LA I +K
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 129/216 (59%), Gaps = 51/216 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFKLLLIGDSGVGK+C+L RF+DD + ++ISTIG+DFKI+T+ L+ K +KLQIWDT
Sbjct: 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDT 65
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF TIT+SYYRGA GI++VYD+T+ SFDN+ +W++ ID +A E+V K+++G D
Sbjct: 66 AGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCD 125
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
+ +VV S
Sbjct: 126 LVSK-----------------------------------------------RVVTS---- 134
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
G +A +G++F+ETSAK N+E+AF +A I
Sbjct: 135 DEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 143/257 (55%), Gaps = 65/257 (25%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFKLLLIG+SGVGK+C+L RFSDD + +ISTIG+DFKIKTV+L GK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF TIT+SYYRG+ GI++VYD+T+++SF+ + WL+ ID +A V K+++G D
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
+ ++ YD+ E + AN+ P
Sbjct: 125 LKDKR----------------VVEYDVAKEFA-------------DANKMP--------- 146
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDR 245
F+ETSA + N+E AF+ +A I + S ++ E T KK D+
Sbjct: 147 -------------FLETSALDSTNVEDAFLTMARQIKESMSQQNLNE-----TTQKKEDK 188
Query: 246 GGM---------AGGCC 253
G + GGCC
Sbjct: 189 GNVNLKGQSLTNTGGCC 205
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 177 bits (449), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 143/258 (55%), Gaps = 66/258 (25%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFKLLLIG+SGVGK+C+L RFSDD + +ISTIG+DFKIKTV+L GK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF TIT+SYYRG+ GI++VYD+T+++SF+ + WL+ ID +A V K+++G D
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
+ ++ YD+ E + AN+ P
Sbjct: 125 LKDKR----------------VVEYDVAKEFA-------------DANKMP--------- 146
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDR 245
F+ETSA + N+E AF+ +A I + S ++ E T KK D+
Sbjct: 147 -------------FLETSALDSTNVEDAFLTMARQIKESMSQQNLNE-----TTQKKEDK 188
Query: 246 GGM----------AGGCC 253
G + GGCC
Sbjct: 189 GNVNLKGQSLTNTGGGCC 206
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 174 bits (440), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 75/117 (64%), Positives = 101/117 (86%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
+ K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KLQ+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
ERF TITT+YYRGAMGI+LVYD+T+E++F NI +W + ++EHAN++ + +++G D
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 123
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 77/109 (70%), Gaps = 9/109 (8%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQERF TITT+YYRGAMGI+LVYD+T+E++F NI +W + ++EHAN++ Q++
Sbjct: 62 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 121
Query: 180 ----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
V +GEA+A+E G+ F+E+SAK + N+ + F LA I +K
Sbjct: 122 SDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 170
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 127/211 (60%), Gaps = 51/211 (24%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KLLLIGDSGVGK+C+L RF+DD + ++ISTIG+DFKI+T++L GK IKLQIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
F TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G D ++
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
V D T K F
Sbjct: 121 ------------------VVDYTTAKEF-------------------------------- 130
Query: 191 IAREYGVRFMETSAKANINIEKAFIELATAI 221
A G+ F+ETSAK N+E++F+ +A I
Sbjct: 131 -ADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 127/230 (55%), Gaps = 57/230 (24%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAF-NTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
YD FK++L+GDSGVGKTC+L RF D AF TFIST+GIDF+ K +D+ G K+KLQ+WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
TAGQERF ++T +YYR A ++L+YD+TN+ SFDNI WL I E+A DV M+LG
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
D+A ER V
Sbjct: 127 DSA-HERV--------------------------------------------------VK 135
Query: 185 KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAP 234
+ GE +A+EYG+ FMETSAK +N++ AF +A K R ++AP
Sbjct: 136 REDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA-----KELKRRSMKAP 180
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 51/216 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFKLLLIG+SGVGK+C+L RFSDD + +ISTIG+DFKIKTV+L GK +KLQIWDT
Sbjct: 18 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 77
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF TIT+SYYRG+ GI++VYD+T+++SF+ + WL+ ID +A V K+++G D
Sbjct: 78 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 137
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
+ ++ YD+ E + AN+ P
Sbjct: 138 LKDKR----------------VVEYDVAKEFA-------------DANKMP--------- 159
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
F+ETSA + N+E AF+ +A I
Sbjct: 160 -------------FLETSALDSTNVEDAFLTMARQI 182
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 72/114 (63%), Positives = 99/114 (86%)
Query: 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71
LLLIGDSGVGK+C+L RF+DD + ++ISTIG+DFKI+T++L GK IKLQIWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G D
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 114
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 46/51 (90%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 175
DTAGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+
Sbjct: 53 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN 103
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 160 bits (404), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
Query: 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
+ YD LFKLL+IGDSGVGK+ +L RF+D+ F+ ++I+TIG+DFKI+TV++ G+K+KLQIW
Sbjct: 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
DTAGQERF TIT++YYRG G+++VYD+T+ +SF N+ +WL I+++ +DV ++++G
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNK 122
Query: 124 KDTAGQERFHTITTSYYRGAMGIML 148
D ++ T + G MGI L
Sbjct: 123 NDDPERKVVETEDAYKFAGQMGIQL 147
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 13/101 (12%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA-----------N 173
DTAGQERF TIT++YYRG G+++VYD+T+ +SF N+ +WL I+++ N
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKN 123
Query: 174 EDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAF 214
+DP+ V A + G++ ETSAK N+N+E+ F
Sbjct: 124 DDPE--RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 124/221 (56%), Gaps = 51/221 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
+D++FKLL+IG+S VGKT LFR++DD F F+ST+GIDFK+KTV K++KLQIWDT
Sbjct: 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQER+ TITT+YYRGAMG +L+YDITNE+SF+ + W I ++ ++ + +++G D
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
E+ +VV +
Sbjct: 140 M-----------------------------------------------EEERVVPT---- 148
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
+G+ +A + G F E SAK NI++ +AF L AI DK S
Sbjct: 149 EKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 157 bits (398), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 122/219 (55%), Gaps = 51/219 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
+D++FK+L+IG+S VGKT LFR++DD+F F+ST+GIDFK+KT+ K+IKLQIWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQER+ TITT+YYRGAMG +L+YDITNE+SF+ + W I ++ ++ + +++G D
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
ED +VV+S
Sbjct: 122 M-----------------------------------------------EDERVVSS---- 130
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
RG +A G F E SAK NIN+++ F L I +K
Sbjct: 131 ERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 116/219 (52%), Gaps = 51/219 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
Y +LFK ++IGD+GVGK+C+L +F+D F TIG++F + + + GK+IKLQIWDT
Sbjct: 7 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQE F +IT SYYRGA G +LVYDIT +F+++ WL + +H+N ++ M++G D
Sbjct: 67 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
+ V K
Sbjct: 127 LESRRE---------------------------------------------------VKK 135
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
GEA ARE+G+ FMETSAK N+E+AFI A IY+K
Sbjct: 136 EEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 52/224 (23%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
+ + DF ++++IG GVGKT ++ RF+DD F ST+G+DFKIKTV+L+GKKI+LQ
Sbjct: 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAGQERF++IT++YYR A GI+LVYDIT +++FD++ KW++ ID++A+ED E +++G
Sbjct: 79 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
D +IT ++
Sbjct: 139 NKLDCETDR--------------------EITRQQ------------------------- 153
Query: 182 WVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIYDK 224
GE A++ G+RF E SAK N N+++ F++L I K
Sbjct: 154 ------GEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 119/221 (53%), Gaps = 51/221 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
+D+ FK+L+IG+S VGKT LFR++DD+F F+ST+GIDFK+KT+ K+IKLQIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AG ER+ TITT+YYRGA G +L YDITNE+SF+ + W I ++ ++ + +++G D
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
ED +VV+S
Sbjct: 125 X-----------------------------------------------EDERVVSS---- 133
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
RG +A G F E SAK NIN+++ F L I +K S
Sbjct: 134 ERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXS 174
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 120/224 (53%), Gaps = 51/224 (22%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
+ + D++FKLLLIG+S VGKT LFR++DD+F F+ST+GIDFK+KTV K+IKL
Sbjct: 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
QIWDTAGQER+ TITT+YYRGAMG +L+YDI N++SF + W I ++ ++ + +++
Sbjct: 74 QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
G D ED +VV
Sbjct: 134 GNKCDL-----------------------------------------------EDERVVP 146
Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+ G +A + G F E SAK NIN+++ F L I +K
Sbjct: 147 A----EDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK 186
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 118/218 (54%), Gaps = 51/218 (23%)
Query: 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
+LFK ++IGD+GVGK+C+L +F+D F TIG++F + V++ GK+IKLQIWDTA
Sbjct: 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTA 78
Query: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
GQE F +IT SYYRGA G +LVYDIT ++F+++ WL + +H++ ++ M++G D
Sbjct: 79 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL 138
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
+ D+ E+
Sbjct: 139 ESRR--------------------DVKREE------------------------------ 148
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
GEA ARE+G+ FMETSAK N+E+AFI A IY K
Sbjct: 149 -GEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 185
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 143 bits (361), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 104/158 (65%), Gaps = 2/158 (1%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YDFLFK++LIG++GVGKTC++ RF+ F +TIG+DF IKTV++ G+K+KLQIWDT
Sbjct: 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 82
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF +IT SYYR A ++L YDIT E+SF + +WLR I+++A+ V +++G D
Sbjct: 83 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 142
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163
A + + A + Y T+ K DN+ K
Sbjct: 143 LAERREVSQQRAEEFSEAQD--MYYLETSAKESDNVEK 178
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQERF +IT SYYR A ++L YDIT E+SF + +WLR I+++A+ V
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
V + R E + + ++ETSAK + N+EK F++LA +
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 143 bits (361), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 92/124 (74%)
Query: 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
+ YDFLFKL+L+GD+ VGKTCV+ RF AF+ STIG+DF +KT++++GK++KLQIW
Sbjct: 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
DTAGQERF TIT SYYR A G +L YDIT SF ++ W+ ++ ++A ++ ++++G
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 143
Query: 124 KDTA 127
D +
Sbjct: 144 SDLS 147
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 13/118 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA----------NE 174
DTAGQERF TIT SYYR A G +L YDIT SF ++ W+ ++ ++A N+
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 143
Query: 175 DPQVVNSWVCKHRGEAIAREYGVR-FMETSAKANINIEKAFIELATAIYDKTSGRDPL 231
V +++A Y + +ETSAK + N+E+AF+ +AT + + G PL
Sbjct: 144 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG--PL 199
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 143 bits (361), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 124/238 (52%), Gaps = 54/238 (22%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFK++LIGDSGVGK+ +L RF+ + FN STIG++F +++ + GK IK QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQER+ IT++YYRGA+G +LVYDI +++N+ +WL+ + +HA+ ++ M++G D
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
L+ LR V
Sbjct: 122 ------------------------------------LRHLRA---------------VPT 130
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKP 243
A A + + F+ETSA + N+E+AF + T IY S + + DR D+ P
Sbjct: 131 DEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK---QIADRAAHDESP 185
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 128/265 (48%), Gaps = 68/265 (25%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD LFK++LIGDSGVGK+ +L RF+ + FN STIG++F +T++++GK+IK QIWDT
Sbjct: 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQER+ IT++YYRGA+G ++VYDI+ S++N WL + E+A+++V ++G D
Sbjct: 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
L LR V
Sbjct: 130 ------------------------------------LAHLR---------------AVPT 138
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS-------------GRDPLE 232
+ A+E + F ETSA + N++KAF EL IY K S +
Sbjct: 139 EESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGAS 198
Query: 233 APDRVTIDKKP----DRGGMAGGCC 253
AP+ TI P ++ CC
Sbjct: 199 APNGPTISLTPTPNENKKANGNNCC 223
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 119/222 (53%), Gaps = 51/222 (22%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
+ + +YD+LFK++LIGDSGVGK+ +L RF+ + FN STIG++F +++ + GK IK
Sbjct: 12 VPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 71
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
QIWDTAGQER+ IT++YYRGA+G +LVYDI +++N+ +WL+ + +HA+ ++ M++
Sbjct: 72 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 131
Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
G D L+ LR
Sbjct: 132 GNKSD------------------------------------LRHLRA------------- 142
Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
V A A + G+ F+ETSA + N+E AF + T IY
Sbjct: 143 --VPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 51/217 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFK++LIGDSGVGK+ +L RF+ + FN STIG++F +++ + GK IK QIWDT
Sbjct: 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQER+ IT++YYRGA+G +LVYDI +++N+ +WL+ + +HA+ ++ M++G D
Sbjct: 86 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
L+ LR V
Sbjct: 146 ------------------------------------LRHLRA---------------VPT 154
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
A A + G+ F+ETSA + N+E AF + T IY
Sbjct: 155 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 122/219 (55%), Gaps = 52/219 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKI-KLQIWD 64
YD+LFK++LIGDSGVGK+ +L RF+ D FN STIG++F K++ LK KI K QIWD
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
TAGQER+ IT++YYRGA+G +LVYDIT + SF+NI KWL+ + ++A+ ++ +++G
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
D LK LR I++ N+ Q
Sbjct: 124 D------------------------------------LKHLRVIND--NDATQY------ 139
Query: 185 KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223
A++ + F+ETSA N+E AF +L IY+
Sbjct: 140 -------AKKEKLAFIETSALEATNVELAFHQLLNEIYN 171
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 115/217 (52%), Gaps = 51/217 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFK++LIGDSGVGK+ +L RF+ + FN STIG++F +++ + GK IK QIWDT
Sbjct: 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AG ER+ IT++YYRGA+G +LVYDI +++N+ +WL+ + +HA+ ++ M++G D
Sbjct: 86 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
L+ LR V
Sbjct: 146 ------------------------------------LRHLRA---------------VPT 154
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
A A + G+ F+ETSA + N+E AF + T IY
Sbjct: 155 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 115/217 (52%), Gaps = 51/217 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFK++LIGDSGVGK+ +L RF+ + FN STIG++F +++ + GK IK QIWDT
Sbjct: 5 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 64
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AG ER+ IT++YYRGA+G +LVYDI +++N+ +WL+ + +HA+ ++ M++G D
Sbjct: 65 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
L+ LR V
Sbjct: 125 ------------------------------------LRHLRA---------------VPT 133
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
A A + G+ F+ETSA + N+E AF + T IY
Sbjct: 134 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 106/163 (65%), Gaps = 2/163 (1%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFK++LIGDSGVGK+ +L RF+ D FN STIG++F +T++++ KKIK QIWDT
Sbjct: 7 YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDT 66
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AG ER+ IT++YYRGA+G ++VYDI+ S++N WL + E+A+++V ++G D
Sbjct: 67 AGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSD 126
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168
A T + AM +++ T+ + DN+ K R +
Sbjct: 127 LAHLRAVPTDEAKNF--AMENQMLFTETSALNSDNVDKAFREL 167
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 10/120 (8%)
Query: 117 KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDP 176
K I + DTAG ER+ IT++YYRGA+G ++VYDI+ S++N WL + E+A+++
Sbjct: 57 KKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNV 116
Query: 177 QV---VNSWVCKH-------RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
V N H + A E + F ETSA + N++KAF EL AI+ S
Sbjct: 117 AVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVS 176
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 51/217 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFK++LIGDSGVGK+ +L RF+ + FN STIG++F +++ + GK IK QIWDT
Sbjct: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AG ER+ IT++YYRGA+G +LVYDI +++N+ +WL+ + +HA+ ++ ++G D
Sbjct: 68 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 127
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
L+ LR V
Sbjct: 128 ------------------------------------LRHLRA---------------VPT 136
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
A A + G+ F+ETSA + N+E AF + T IY
Sbjct: 137 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 51/217 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFK++LIGDSGVGK+ +L RF+ + FN STIG++F +++ + GK IK QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AG ER+ IT++YYRGA+G +LVYDI +++N+ +WL+ + +HA+ ++ ++G D
Sbjct: 62 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 121
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
L+ LR V
Sbjct: 122 ------------------------------------LRHLRA---------------VPT 130
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
A A + G+ F+ETSA + N+E AF + T IY
Sbjct: 131 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 51/222 (22%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
A Y ++FK ++IGD GVGK+C+L +F++ F TIG++F + +++ G+KIKLQ
Sbjct: 8 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAGQERF +T SYYRGA G ++VYDIT +++++ WL + N + +++G
Sbjct: 68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
D Q D+T E++
Sbjct: 128 NKADLEAQR--------------------DVTYEEA------------------------ 143
Query: 182 WVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223
+ A E G+ F+E SAK N+E AF+E A IY
Sbjct: 144 -------KQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 51/222 (22%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
A Y ++FK ++IGD GVGK+C+L +F++ F TIG++F + +++ G+KIKLQ
Sbjct: 23 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 82
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAGQ RF +T SYYRGA G ++VYDIT +++++ WL + N + +++G
Sbjct: 83 IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 142
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
D Q D+T E++
Sbjct: 143 NKADLEAQR--------------------DVTYEEA------------------------ 158
Query: 182 WVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223
+ A E G+ F+E SAK N+E AF+E A IY
Sbjct: 159 -------KQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 94/140 (67%), Gaps = 11/140 (7%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK------ 54
M+ YD+L K L +GDSGVGKT VL++++D FN+ FI+T+GIDF+ K V +
Sbjct: 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62
Query: 55 ----GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 110
G++I LQ+WDTAG ERF ++TT+++R AMG +L++D+TNE+SF N+ W+ + H
Sbjct: 63 AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122
Query: 111 A-NEDVEKMILGKTKDTAGQ 129
A +E+ + ++ G D Q
Sbjct: 123 AYSENPDIVLCGNKSDLEDQ 142
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 88/125 (70%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
+ +TYDFLFK L+IG++G GK+C+L +F + F TIG++F K +++ GK +KL
Sbjct: 3 LGSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKL 62
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
QIWDTAGQERF ++T SYYRGA G +LVYDIT+ ++++ + WL + A++++ ++
Sbjct: 63 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC 122
Query: 121 GKTKD 125
G KD
Sbjct: 123 GNKKD 127
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 66/113 (58%), Gaps = 16/113 (14%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
DTAGQERF ++T SYYRGA G +LVYDIT+ ++++ + WL + A+++ ++ +C
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII---LC 122
Query: 185 KHR-------------GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
++ A+E + F+ETSA ++E+AF++ A I +K
Sbjct: 123 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K+L+IG+SGVGK+ +L RF+DD F+ +TIG+DFK+KT+ + G K KL IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE-DVEKMILGKTKDTAG 128
RF T+T SYYRGA G++LVYD+T +F + WL ++ + D+ ++G D
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN 135
Query: 129 QE 130
+E
Sbjct: 136 RE 137
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAGQERF T+T SYYRGA G++LVYD+T +F + WL ++ + + V
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGN 129
Query: 179 ----VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
N V ++ G AR++ F+E SAK ++ AF EL I
Sbjct: 130 KIDKENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 87/122 (71%)
Query: 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
+TYDFLFK L+IG++G GK+C+L +F + F TIG++F K +++ GK +KLQIW
Sbjct: 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
DTAGQERF ++T SYYRGA G +LVYDIT+ ++++ + WL + A++++ ++ G
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 124 KD 125
KD
Sbjct: 125 KD 126
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 18/121 (14%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
DTAGQERF ++T SYYRGA G +LVYDIT+ ++++ + WL + A+++ ++ +C
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII---LC 121
Query: 185 KHR-------------GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT-SGR-D 229
++ A+E + F+ETSA N+E+AF++ A I +K SG D
Sbjct: 122 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181
Query: 230 P 230
P
Sbjct: 182 P 182
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 113/218 (51%), Gaps = 51/218 (23%)
Query: 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
DFLFK L+IG +G GK+C+L +F ++ F TIG++F + V++ GK +KLQIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
GQERF ++T SYYRGA G +LVYDIT+ ++++++ WL + A+ ++ ++ G KD
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
DP+ +++
Sbjct: 143 ------------------------------------------------DPEREVTFLEAS 154
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
R A+E + F+ETSA N+E+AF++ A I +K
Sbjct: 155 R---FAQENELMFLETSALTGENVEEAFLKCARTILNK 189
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 109/216 (50%), Gaps = 45/216 (20%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+K++L GD+ VGK+ L R + F +T+G+DF++KT+ + G++ LQ+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
RF +I SY+R A G++L+YD+T EKSF NI +W+ I++ A+E V M++G D
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR-- 146
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
D A E + V H GE
Sbjct: 147 ---------------------------------------DTAATEGQKCVPG----HFGE 163
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225
+A YG F ETSAK NI +A + LA + +T
Sbjct: 164 KLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 112/219 (51%), Gaps = 62/219 (28%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV----------DLKG 55
YD+L KLL +GDSGVGKT L+R++D+ FN FI+T+GIDF+ K V K
Sbjct: 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 81
Query: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-ED 114
K+ LQ+WDTAGQERF ++TT+++R AMG +L++D+T+++SF N+ W+ + +A E+
Sbjct: 82 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 141
Query: 115 VEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE 174
+ +++G D Q R ++E
Sbjct: 142 PDIVLIGNKADLPDQ------------------------------------REVNE---- 161
Query: 175 DPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKA 213
+ +A +YG+ + ETSA N+EKA
Sbjct: 162 -----------RQARELADKYGIPYFETSAATGQNVEKA 189
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 102/163 (62%), Gaps = 5/163 (3%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
Y+F+FK++LIG+SGVGKT +L RF+ + F+ +TIG++F +TV L +K QIWDT
Sbjct: 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 81
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AG ER+ IT++YYRGA+G +LV+D+T +++ + +WL+ + +HA + M++G D
Sbjct: 82 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 141
Query: 126 TAGQERFHTITTSYYRGAMGIMLV----YDITN-EKSFDNILK 163
+ T + G++ + D TN E +F+ +LK
Sbjct: 142 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLK 184
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 14/114 (12%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
DTAG ER+ IT++YYRGA+G +LV+D+T +++ + +WL+ + +HA + +V V
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVG 137
Query: 185 KHRGEAIAREY------------GVRFMETSAKANINIEKAFIELATAIYDKTS 226
+ ARE G+ F+ETSA + N+E AF + I+ K S
Sbjct: 138 NKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 123 bits (309), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 102/163 (62%), Gaps = 5/163 (3%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
Y+F+FK++LIG+SGVGKT +L RF+ + F+ +TIG++F +TV L +K QIWDT
Sbjct: 7 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 66
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AG ER+ IT++YYRGA+G +LV+D+T +++ + +WL+ + +HA + M++G D
Sbjct: 67 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 126
Query: 126 TAGQERFHTITTSYYRGAMGIMLV----YDITN-EKSFDNILK 163
+ T + G++ + D TN E +F+ +LK
Sbjct: 127 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLK 169
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 14/114 (12%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
DTAG ER+ IT++YYRGA+G +LV+D+T +++ + +WL+ + +HA + +V V
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVG 122
Query: 185 KHRGEAIAREY------------GVRFMETSAKANINIEKAFIELATAIYDKTS 226
+ ARE G+ F+ETSA + N+E AF + I+ K S
Sbjct: 123 NKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 176
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 86/122 (70%)
Query: 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
+TYDFLFK L+IG++G GK+C+L +F + F TIG++F K +++ GK +KLQIW
Sbjct: 3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
DTAG ERF ++T SYYRGA G +LVYDIT+ ++++ + WL + A++++ ++ G
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 124 KD 125
KD
Sbjct: 123 KD 124
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 16/113 (14%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
DTAG ERF ++T SYYRGA G +LVYDIT+ ++++ + WL + A+++ ++ +C
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII---LC 119
Query: 185 KHR-------------GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
++ A+E + F+ETSA ++E+AF++ A I +K
Sbjct: 120 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 62/224 (27%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV--DLKGK-- 56
M YD+L KLL +GDSGVGKT L+R++D+ FN FI+T+GIDF+ K V D +G
Sbjct: 3 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADG 62
Query: 57 ------KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 110
K+ LQ+WDTAG ERF ++TT+++R AMG +L++D+T+++SF N+ W+ + +
Sbjct: 63 ASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 122
Query: 111 AN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169
A E+ + +++G D Q R ++
Sbjct: 123 AYCENPDIVLIGNKADLPDQ------------------------------------REVN 146
Query: 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKA 213
E + +A +YG+ + ETSA N+EK+
Sbjct: 147 E---------------RQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 62/224 (27%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV--DLKGK-- 56
M YD+L KLL +GDSGVGKT L+R++D+ FN FI+T+GIDF+ K V D +G
Sbjct: 3 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADG 62
Query: 57 ------KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 110
K+ LQ+WDTAG ERF ++TT+++R AMG +L++D+T+++SF N+ W+ + +
Sbjct: 63 ASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 122
Query: 111 A-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169
A E+ + +++G D Q R ++
Sbjct: 123 AYCENPDIVLIGNKADLPDQ------------------------------------REVN 146
Query: 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKA 213
E + +A +YG+ + ETSA N+EK+
Sbjct: 147 E---------------RQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 103/212 (48%), Gaps = 51/212 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+ +G+ VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + I+LQ+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
RF ++ SY R + ++VYDITN SF KW+ ++ DV M++G D A +
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ V GE
Sbjct: 127 RQ---------------------------------------------------VSIEEGE 135
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
A+E V F+ETSAKA N+++ F +A A+
Sbjct: 136 RKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 117 bits (292), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 115/245 (46%), Gaps = 52/245 (21%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+ +G+ VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + I+LQ+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
RF ++ SY R + ++VYDITN SF KW+ ++ DV M++G D A +
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ V GE
Sbjct: 134 RQ---------------------------------------------------VSIEEGE 142
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD-PLEAPDRVTIDKKPDRGGM 248
A+E V F+ETSAKA N+++ F +A A+ S +D E + ++K ++
Sbjct: 143 RKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVS 202
Query: 249 AGGCC 253
GGC
Sbjct: 203 EGGCS 207
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 117 bits (292), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 62/219 (28%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV--DLKGK------- 56
YD+L KLL +GDSGVGKT L+R++D+ FN FI+T+GIDF+ K V D +G
Sbjct: 8 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 57 -KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-ED 114
K+ LQ+WDTAG ERF ++TT+++R A G +L +D+T+++SF N+ W + +A E+
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCEN 127
Query: 115 VEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE 174
+ +++G D Q R ++E
Sbjct: 128 PDIVLIGNKADLPDQ------------------------------------REVNE---- 147
Query: 175 DPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKA 213
+ +A +YG+ + ETSA N+EK+
Sbjct: 148 -----------RQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 89/135 (65%), Gaps = 11/135 (8%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV--DLKGK------- 56
YD+L KLL +GDSGVGKT L+R++D+ FN FI+T+GIDF+ K V D +G
Sbjct: 8 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 57 -KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-ED 114
K+ LQ+WDTAG ERF ++TT+++R A G +L +D+T+++SF N+ W + +A E+
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCEN 127
Query: 115 VEKMILGKTKDTAGQ 129
+ +++G D Q
Sbjct: 128 PDIVLIGNKADLPDQ 142
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 115/245 (46%), Gaps = 52/245 (21%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+ +G+ VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
RF ++ SY R + ++VYDITN SF KW+ ++ DV M++G D A +
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ V GE
Sbjct: 137 RQ---------------------------------------------------VSIEEGE 145
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD-PLEAPDRVTIDKKPDRGGM 248
A+E V F+ETSAKA N+++ F +A A+ S +D E + ++K ++
Sbjct: 146 RKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVS 205
Query: 249 AGGCC 253
GGC
Sbjct: 206 EGGCL 210
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 103/212 (48%), Gaps = 51/212 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+ +G+ VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
RF ++ SY R + ++VYDITN SF KW+ ++ DV M++G D A +
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ V GE
Sbjct: 122 RQ---------------------------------------------------VSIEEGE 130
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
A+E V F+ETSAKA N+++ F +A A+
Sbjct: 131 RKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 103/212 (48%), Gaps = 51/212 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+ +G+ VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
RF ++ SY R + ++VYDITN SF KW+ ++ DV M++G D + +
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ T GE
Sbjct: 135 RQVST---------------------------------------------------EEGE 143
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
A+E V F+ETSAKA N+++ F +A A+
Sbjct: 144 RKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 5/169 (2%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K+ L+GD+GVGK+ ++ RF D F+ TIG F KTV + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
RFH++ YYRG+ ++VYDIT + SF + KW++ + EH E++ I G D +
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 130 ERFHTITTSYYRGAMGIMLVYD-----ITNEKSFDNILKWLRNIDEHAN 173
Y ++G ++V I E+ F I + + +D H N
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 14/118 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
DTAGQERFH++ YYRG+ ++VYDIT + SF + KW++ + EH E+ + +
Sbjct: 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK 137
Query: 183 --------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLE 232
V + A G +ETSAK INIE EL I + DP E
Sbjct: 138 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE----ELFQGISRQIPPLDPHE 191
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 104/214 (48%), Gaps = 51/214 (23%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+ +G+ VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
RF ++ SY R + ++VYDITN SF KW+ ++ DV M++G D A +
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ + GE
Sbjct: 123 RQ---------------------------------------------------ITIEEGE 131
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYD 223
A+E V F+ETSAK N+++ F +A+A+ +
Sbjct: 132 QRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 105/220 (47%), Gaps = 51/220 (23%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+ +G+ VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
RF ++ SY R + ++VYDITN SF KW+ ++ DV M++G D A +
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ V GE
Sbjct: 127 RQ---------------------------------------------------VSIEEGE 135
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD 229
A+E V F+ETSAKA N+++ F +A A+ S +D
Sbjct: 136 RKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 175
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 79/120 (65%), Gaps = 4/120 (3%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
+FK+++IGDS VGKTC+ +RF F +TIG+DF+ + VD+ G++IK+Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 69 ERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH--ANEDVEKMILGKTKD 125
ERF ++ YYR ++ VYD TN SF ++ W+ +H AN D+ ++++G D
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAN-DIPRILVGNKCD 147
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 125 DTAGQERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH--ANEDPQVVNS 181
DTAGQERF ++ YYR ++ VYD TN SF ++ W+ +H AN+ P+++
Sbjct: 84 DTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVG 143
Query: 182 WVCKHR---------GEAIAREYGVRFMETSAKA---NINIEKAFIELA 218
C R + A + ETSAK N ++E F LA
Sbjct: 144 NKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLA 192
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 80/120 (66%), Gaps = 4/120 (3%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
+FK+++IGDS VGKTC+ +RF F +TIG+DF+ + VD+ G++IK+Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 69 ERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH--ANEDVEKMILGKTKD 125
ERF ++ YYR ++ VYD+TN SF ++ W+ +H AN D+ ++++G D
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN-DIPRILVGNKCD 138
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 125 DTAGQERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH--ANEDPQVVNS 181
DTAGQERF ++ YYR ++ VYD+TN SF ++ W+ +H AN+ P+++
Sbjct: 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134
Query: 182 WVCKHR---------GEAIAREYGVRFMETSAKA---NINIEKAFIELA 218
C R + A + + ETSAK N ++E F+ LA
Sbjct: 135 NKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 183
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 76/116 (65%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+ +G+ VGKT ++ RF D F+ + STIGIDF KT+ L ++LQ+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
RF ++ SY R + ++VYDITN +SF+N KW+++I +DV ++G D
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTD 117
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED---PQVVNS 181
DTAGQERF ++ SY R + ++VYDITN +SF+N KW+++I +D V N
Sbjct: 56 DTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 115
Query: 182 W-------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
V G A+EY F ETSAKA NI+ F + A+ +
Sbjct: 116 TDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STIG F +TV L +K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITNE+SF W++ + A+ ++ + G D A +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
DTAGQER+H++ YYRGA ++VYDITNE+SF W++ + A+ P +V +
Sbjct: 62 DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 119
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V ++ A + + F ETSAK + N+ + F +A
Sbjct: 120 NKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIA 165
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STIG F +TV L +K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITNE+SF W++ + A+ ++ + G D A +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
DTAGQER+H++ YYRGA ++VYDITNE+SF W++ + A+ P +V +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 118
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V ++ A + + FMETSAK ++N+ + F+ +A
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STIG F +TV L +K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITNE+SF W++ + A+ ++ + G D A +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
DTAGQER+H++ YYRGA ++VYDITNE+SF W++ + A+ P +V +
Sbjct: 62 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 119
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V ++ A + + FMETSAK ++N+ + F+ +A
Sbjct: 120 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 165
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIK-LQIWDTAG 67
+ K++++GDSGVGKT ++ R+ +D ++ + +TIG DF K V + G K+ +Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKT 123
QERF ++ ++YRGA +LVYD+TN SF+NI W HAN E +ILG
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 124 KD 125
D
Sbjct: 128 ID 129
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 114 DVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN 173
D +K+ + DTAGQERF ++ ++YRGA +LVYD+TN SF+NI W HAN
Sbjct: 53 DGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHAN 112
Query: 174 E---------------DPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIEL 217
D + V + + +A+ G + TSAK IN++ AF E+
Sbjct: 113 VNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172
Query: 218 A 218
A
Sbjct: 173 A 173
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STIG F +TV L +K +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITNE+SF W++ + A+ ++ + G D A +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
DTAGQER+H++ YYRGA ++VYDITNE+SF W++ + A+ P +V +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 118
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V ++ A + + FMETSAK ++N+ + F+ +A
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 81/138 (58%)
Query: 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
+ FK++L+G+ VGKT ++ R+ ++ FN I+T+G F K +++ GK++ L IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
QERFH + YYR + G +LVYDIT+E SF + W++ + + ++ I+G D
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 128 GQERFHTITTSYYRGAMG 145
+ Y ++G
Sbjct: 125 KERHVSIQEAESYAESVG 142
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH-ANEDPQVV---- 179
DTAGQERFH + YYR + G +LVYDIT+E SF + W++ + + NE +
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V E+ A G + TSAK N IE+ F++L
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STIG F +TV L +K +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITNE+SF W++ + A+ ++ + G D A +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
DTAGQER+H++ YYRGA ++VYDITNE+SF W++ + A+ P +V +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 118
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V ++ A + + FMETSAK ++N+ + F+ +A
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STIG F +TV L +K +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITNE+SF W++ + A+ ++ + G D A +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
DTAGQER+H++ YYRGA ++VYDITNE+SF W++ + A+ P +V +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 118
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V ++ A + + FMETSAK ++N+ + F+ +A
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STIG F +TV L +K +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITNE+SF W++ + A+ ++ + G D A +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
DTAGQER+H++ YYRGA ++VYDITNE+SF W++ + A+ P +V +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 118
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V ++ A + + FMETSAK ++N+ + F+ +A
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STIG F +TV L +K +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITNE+SF W++ + A+ ++ + G D A +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
DTAGQER+H++ YYRGA ++VYDITNE+SF W++ + A+ P +V +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 118
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V ++ A + + FMETSAK ++N+ + F+ +A
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 70/116 (60%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K+ L+GD+GVGK+ +++RF +D+F+ TIG F KTV + + K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
RF + YYRG+ ++VYDIT E++F + W+R + +H + I G D
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 121
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV- 183
DTAGQERF + YYRG+ ++VYDIT E++F + W+R + +H P +V +
Sbjct: 60 DTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG--PPSIVVAIAG 117
Query: 184 -------CKHRGEAIAREYG----VRFMETSAKANINIEKAFIELATAI 221
+ E A++Y F+ETSAK INI + FIE++ I
Sbjct: 118 NKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 51/208 (24%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+L+GD G GK+ ++ RF D F STIG F +T+ + +K +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
+H++ YYRGA ++V+D+TN+ SF+ KW++ + N ++ + G D
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSD----- 128
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
L + + ED Q
Sbjct: 129 ----------------------------------LLDARKVTAEDAQT------------ 142
Query: 191 IAREYGVRFMETSAKANINIEKAFIELA 218
A+E G+ FMETSAK N+++ F E+A
Sbjct: 143 YAQENGLFFMETSAKTATNVKEIFYEIA 170
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 73/120 (60%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STIG F ++V L +K +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITN+++F W++ + A+ + + G D A +
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQER+H++ YYRGA ++VYDITN+++F W++ + A+ P +V
Sbjct: 63 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQAS--PSIVIALAG 120
Query: 180 -------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V +A A + + FMETSAK +N+ F+ +A
Sbjct: 121 NKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIA 166
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 73/120 (60%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STIG F +TV L +K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITNE+SF W++ + A+ ++ + G D A +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
DTAG ER+H++ YYRGA ++VYDITNE+SF W++ + A+ P +V +
Sbjct: 60 DTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 117
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V ++ A + + FMETSAK ++N+ + F+ +A
Sbjct: 118 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 163
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 72/120 (60%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STIG F +TV L +K +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITN +F W++ + A+ ++ + G D A +
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
DTAGQER+H++ YYRGA ++VYDITN +F W++ + A+ P +V +
Sbjct: 58 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS--PNIVIALAG 115
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V +A A + + FMETSAK +N+ + F+ +A
Sbjct: 116 NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 161
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 80/138 (57%)
Query: 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
+ FK++L+G+ VGKT ++ R+ ++ FN I+T+ F K +++ GK++ L IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
QERFH + YYR + G +LVYDIT+E SF + W++ + + ++ I+G D
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 128 GQERFHTITTSYYRGAMG 145
+ Y ++G
Sbjct: 139 KERHVSIQEAESYAESVG 156
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH-ANEDPQVV---- 179
DTAGQERFH + YYR + G +LVYDIT+E SF + W++ + + NE +
Sbjct: 75 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 134
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V E+ A G + TSAK N IE+ F++L
Sbjct: 135 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 178
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 80/138 (57%)
Query: 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
+ FK++L+G+ VGKT ++ R+ ++ FN I+T+ F K +++ GK++ L IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
QERFH + YYR + G +LVYDIT+E SF + W++ + + ++ I+G D
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 128 GQERFHTITTSYYRGAMG 145
+ Y ++G
Sbjct: 125 KERHVSIQEAESYAESVG 142
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH-ANEDPQVV---- 179
DTAGQERFH + YYR + G +LVYDIT+E SF + W++ + + NE +
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V E+ A G + TSAK N IE+ F++L
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 69/116 (59%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K+ L+GD+GVGK+ +++RF +D+F+ TIG F KTV + + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
RF + YYRG+ ++VYDIT E++F + W+R + +H + I G D
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 122
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STI F +TV L +K +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITN +F W++ + A+ ++ + G D A +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
DTAGQER+H++ YYRGA ++VYDITN +F W++ + A+ P +V +
Sbjct: 60 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS--PNIVIALAG 117
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V +A A + + FMETSAK +N+ + F+ +A
Sbjct: 118 NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STIG F +TV L +K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITN +F W++ + A+ ++ + G D A +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
DTAG ER+H++ YYRGA ++VYDITN +F W++ + A+ P +V +
Sbjct: 60 DTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS--PNIVIALAG 117
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
V +A A + + FMETSAK +N+ + F+ +A
Sbjct: 118 NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
LFK++L+GD GVGK+ ++ R+ + F+T TIG++F K +++ G + +QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTK 124
ERF ++ T +YRG+ +L + + + +SF N+ W + +A+ E +ILG
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 125 DTAGQE 130
D + ++
Sbjct: 129 DISERQ 134
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
LFK++L+GD GVGK+ ++ R+ + F+T TIG++F K +++ G + +QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTK 124
ERF ++ T +YRG+ +L + + + +SF N+ W + +A+ E +ILG
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 125 DTAGQE 130
D + ++
Sbjct: 127 DISERQ 132
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 92/213 (43%), Gaps = 52/213 (24%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+L+G++ VGK+ ++ RF + F TIG F + V + +K +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD--TAG 128
F ++ YYR A ++VYD+T +SF W++ + E A++D+ ++G D G
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
ER V + G
Sbjct: 125 GER--------------------------------------------------KVAREEG 134
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
E +A E G+ F ETSAK N+ F+ + I
Sbjct: 135 EKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
LFK++L+GD GVGK+ ++ R+ + F++ TIG++F K +++ G + +QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTK 124
ERF ++ T +YRG+ +L + + + +SF N+ W + +A+ E +ILG
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 125 D 125
D
Sbjct: 131 D 131
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 115/247 (46%), Gaps = 51/247 (20%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K++++GDSGVGKT ++ ++ + F+ + +TIG DF K V + + + +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
ERF ++ ++YRGA +LV+D+T +F + W DE +I +D
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR---DEF-------LIQASPRDP-- 115
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
E F + + N+ F+ N V R
Sbjct: 116 -ENFPFVV---------------LGNKIDFE--------------------NRQVATKRA 139
Query: 189 EA-IAREYGVRFMETSAKANINIEKAFIELA-TAIYDKTSGRDPLEAPDRVTIDKKPDRG 246
+A + + + ETSAK IN+E+AF +A A+ +T E P+ + +DK DR
Sbjct: 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKN-DRA 198
Query: 247 GMAGGCC 253
+ C
Sbjct: 199 KASAESC 205
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 114/246 (46%), Gaps = 50/246 (20%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K++++GDSGVGKT ++ ++ + F+ + +TIG DF K V + + + +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
ERF ++ ++YRGA +LV+D+T +F + W DE +I +D
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR---DEF-------LIQASPRDP-- 115
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
E F + +G + D+ N + V R
Sbjct: 116 -ENFPFVV-------LGNKI--DLENRQ--------------------------VATKRA 139
Query: 189 EA-IAREYGVRFMETSAKANINIEKAFIELA-TAIYDKTSGRDPLEAPDRVTIDKKPDRG 246
+A + + + ETSAK IN+E+AF +A A+ +T E P+ + +DK
Sbjct: 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAK 199
Query: 247 GMAGGC 252
A C
Sbjct: 200 ASAESC 205
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 70/105 (66%)
Query: 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
L K++L+GD GVGK+ ++ R+ + F++ TIG++F + +++ G+ + LQIWDTAG
Sbjct: 6 LLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAG 65
Query: 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN 112
QERF ++ T +YRGA +L + + + +SF+N+ W + +A+
Sbjct: 66 QERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYAD 110
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 64/95 (67%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K++++GDSGVGKT ++ ++ + F+ + +TIG DF K V + + + +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 103
ERF ++ ++YRGA +LV+D+T +F + W
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 116 EKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN-IDEHANE 174
++++ + DTAGQERF ++ ++YRGA +LV+D+T +F + W + + +
Sbjct: 54 DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPR 113
Query: 175 DPQ------------VVNSWVCKHRGEA-IAREYGVRFMETSAKANINIEKAFIELA 218
DP+ + N V R +A + + + ETSAK IN+E+AF +A
Sbjct: 114 DPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 51/247 (20%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K++++GDSGVGKT ++ ++ + F+ + +TIG DF K V + + + +QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
ERF ++ ++YRGA +LV+D+T +F + W DE +I +D
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR---DEF-------LIQASPRDP-- 115
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
E F + +G + D+ N + V R
Sbjct: 116 -ENFPFVV-------LGNKI--DLENRQ--------------------------VATKRA 139
Query: 189 EA-IAREYGVRFMETSAKANINIEKAFIELA-TAIYDKTSGRDPLEAPDRVTIDKKPDRG 246
+A + + + ETSAK IN+E+AF +A A+ +T E P+ + +DK DR
Sbjct: 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKN-DRA 198
Query: 247 GMAGGCC 253
+ C
Sbjct: 199 KASAESC 205
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 45/211 (21%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K++L+GD G GKT +L F+D AF ++ T+ + + + +KGK + L IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILG-KTKDTAG 128
+ + +Y A ++L +D+T+ SFDNI +W ++ H + V +++G KT
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKT----- 148
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
D+ +KS N L+ RN E V HRG
Sbjct: 149 ----------------------DLRKDKSLVNKLR--RNGLEP-----------VTYHRG 173
Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELA 218
+ +AR G V ++E SA+ + N+ F E A
Sbjct: 174 QEMARSVGAVAYLECSARLHDNVHAVFQEAA 204
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 60/98 (61%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K++++G+ VGK+ ++ R+ F + TIG+DF + + + + ++L +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
F IT +YYRGA +LV+ T+ +SF+ I W +
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV 103
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 112 NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 171
+EDV M+ DTAGQE F IT +YYRGA +LV+ T+ +SF+ I W +
Sbjct: 51 DEDVRLMLW----DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE 106
Query: 172 ANEDPQVV---------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
+ P + +S + E +A+ +RF TS K ++N+ + F LA
Sbjct: 107 VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIG-IDFKIKTVDLKGKKIKLQIWDT 65
+ +K+ LIGD GVGKT + R D F + +T+G ++ + +D +G IK +WDT
Sbjct: 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDT 68
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 105
AGQE+ + YY GA G +L +D+T+ + N+ +W++
Sbjct: 69 AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVK 108
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDPQVV--NS 181
DTAGQE+ + YY GA G +L +D+T+ + N+ +W++ NE P VV N
Sbjct: 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126
Query: 182 WVCKHRGE-------AIAREYGVRFMETSAKANINIEKAFIELA 218
K+R + + + + E SAK N F+ LA
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLA 170
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK-KIKLQIWDTAGQ 68
K++++GD GKT + F+ + F + TIG+DF ++ + L G + LQIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
+ Y GA G++LVYDITN +SF+N+ W + + + E + ++ +
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 129 QERFHTI 135
E TI
Sbjct: 127 LEHMRTI 133
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 103 WLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162
+LR I N +V I D GQ + Y GA G++LVYDITN +SF+N+
Sbjct: 44 FLRRITLPGNLNVTLQIW----DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLE 99
Query: 163 KW---LRNIDEHANEDPQV 178
W ++ + E + P V
Sbjct: 100 DWYTVVKKVSEESETQPLV 118
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L FS D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 130 ERFHT 134
E HT
Sbjct: 127 E--HT 129
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KW------------------- 164
DTAGQE + + Y I++ + I + S +NI KW
Sbjct: 61 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 120
Query: 165 --LRNIDEHA-NEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
LRN DEH E ++ V G +A G +ME SAK + + F E+AT
Sbjct: 121 KDLRN-DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 177
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L FS D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 128
Query: 130 ERFHT 134
E HT
Sbjct: 129 E--HT 131
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KW------------------- 164
DTAGQE + + Y I++ + I + S +NI KW
Sbjct: 63 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 122
Query: 165 --LRNIDEHA-NEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
LRN DEH E ++ V G +A G +ME SAK + + F E+AT
Sbjct: 123 KDLRN-DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 179
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L FS D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 125
Query: 130 ERFHT 134
E HT
Sbjct: 126 E--HT 128
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KW------------------- 164
DTAGQE + + Y I++ + I + S +NI KW
Sbjct: 60 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 119
Query: 165 --LRNIDEHA-NEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
LRN DEH E ++ V G +A G +ME SAK + + F E+AT
Sbjct: 120 KDLRN-DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 176
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L FS D F ++ T+ ++ I +++ GK+++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKDLRQD 144
Query: 130 ERFHT 134
E HT
Sbjct: 145 E--HT 147
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L FS D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 125
Query: 130 ERFHT 134
E HT
Sbjct: 126 E--HT 128
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KW------------------- 164
DTAGQE + + Y I++ + I + S +NI KW
Sbjct: 60 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 119
Query: 165 --LRNIDEHA-NEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
LRN DEH E ++ V G +A G +ME SAK + + F E+AT
Sbjct: 120 KDLRN-DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 176
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L FS D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 127
Query: 130 ERFHT 134
E HT
Sbjct: 128 E--HT 130
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KW------------------- 164
DTAGQE + + Y I++ + I + S +NI KW
Sbjct: 62 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 121
Query: 165 --LRNIDEHA-NEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
LRN DEH E ++ V G +A G +ME SAK + + F E+AT
Sbjct: 122 KDLRN-DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 178
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L FS D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 130 ERFHT 134
E HT
Sbjct: 125 E--HT 127
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KW------------------- 164
DTAGQE + + Y I++ + I + S +NI KW
Sbjct: 59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 165 --LRNIDEHA-NEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
LRN DEH E ++ V G +A G +ME SAK + + F E+AT
Sbjct: 119 KDLRN-DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 175
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L FS D F ++ T+ ++ I +++ GK+++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQD 144
Query: 130 ERFHT 134
E HT
Sbjct: 145 E--HT 147
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L FS D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 130 ERFHT 134
E HT
Sbjct: 127 E--HT 129
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KW------------------- 164
DTAGQE + + Y I++ + I + S +NI KW
Sbjct: 61 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 120
Query: 165 --LRNIDEHA-NEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
LRN DEH E ++ V G +A G +ME SAK + + F E+AT
Sbjct: 121 KDLRN-DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 177
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L FS D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 130 ERFHT 134
E HT
Sbjct: 127 E--HT 129
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KW------------------- 164
DTAGQE + + Y I++ + I + S +NI KW
Sbjct: 61 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 120
Query: 165 --LRNIDEHA-NEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
LRN DEH E ++ V G +A G +ME SAK + + F E+AT
Sbjct: 121 KDLRN-DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 177
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L FS D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + + + S +NI KW+ + +H +V +++ KD
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVANKKDLRSD 144
Query: 130 ERFHT 134
E T
Sbjct: 145 EHVRT 149
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L FS D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 130 ERFHT 134
E HT
Sbjct: 125 E--HT 127
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 24/118 (20%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KW------------------- 164
DTAGQE + Y I++ + I + S +NI KW
Sbjct: 59 DTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 165 --LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
LRN + A E ++ V G +A G +ME SAK + + F E+AT
Sbjct: 119 KDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 175
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +++T+G++ IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+F + YY A ++++D+T+ ++ N+ W R++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAGQE+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 129
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
+ K + R+ +++ + SAK+N N EK F+ LA + + P AP
Sbjct: 130 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 189
Query: 235 DRVTID 240
V +D
Sbjct: 190 PEVVMD 195
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +++T+G++ IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+F + YY A ++++D+T+ ++ N+ W R++
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAGQE+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 65 DTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
+ K + R+ +++ + SAK+N N EK F+ LA + + P AP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184
Query: 235 DRVTID 240
V +D
Sbjct: 185 PEVVMD 190
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +++T+G++ IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+F + YY A ++++D+T+ ++ N+ W R++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAGQE+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
+ K + R+ +++ + SAK+N N EK F+ LA + + P AP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184
Query: 235 DRVTID 240
V +D
Sbjct: 185 PEVVMD 190
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +++T+G++ IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+F + YY A ++++D+T+ ++ N+ W R++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAGQE+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
+ K + R+ +++ + SAK+N N EK F+ LA + + P AP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCLAP 184
Query: 235 DRVTID 240
V +D
Sbjct: 185 PEVVMD 190
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 6/158 (3%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +I+TIG++ + +IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+F + YY A ++++D+T+ ++ N+ W R++ E++ ++ G D +
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVK-E 130
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEK--SFDNILKWL 165
+ T +++R + YDI+ + +F+ WL
Sbjct: 131 RKVKAKTITFHRKKN--LQYYDISAKSNYNFEKPFLWL 166
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 18/132 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAG E+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 67 DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKV 126
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLE----- 232
V K + R+ +++ + SAK+N N EK F+ LA K +G LE
Sbjct: 127 DVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQLEFVASP 182
Query: 233 --APDRVTIDKK 242
AP V +D++
Sbjct: 183 ALAPPEVQVDEQ 194
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F ++ T+G++ IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+F + YY A ++++D+T+ ++ N+ W R++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAGQE+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
+ K + R+ +++ + SAK+N N EK F+ LA + + P AP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184
Query: 235 DRVTID 240
V +D
Sbjct: 185 PEVVMD 190
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
K + +GD VGKTC+L ++ + F T ++ T+ +F V + G + L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTA 127
E ++ + YRGA +L + + ++ S++NI KWL + +H + +++G D
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPEL-KHYAPGIPIVLVGTKLDLR 123
Query: 128 GQERF 132
++F
Sbjct: 124 DDKQF 128
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 24/157 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G ML+ N D + N + D + LG DTAGQE ++ +
Sbjct: 15 GAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLG-LWDTAGQEDYNRLRPL 73
Query: 139 YYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDPQVV------------------ 179
YRGA +L + + ++ S++NI KWL + +A P V+
Sbjct: 74 SYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHP 133
Query: 180 -NSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAF 214
+ + +GE + + G VR++E S+K N++ F
Sbjct: 134 GAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
K + +GD VGKTC+L ++ + F T ++ T+ +F V + G + L +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTA 127
E ++ + YRGA +L + + ++ S++N+ KW+ + +H V +++G D
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLR 125
Query: 128 GQERF 132
++F
Sbjct: 126 DDKQF 130
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDPQVV 179
DTAGQE ++ + YRGA +L + + ++ S++N+ KW+ + +A P V+
Sbjct: 62 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVL 117
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +++T+G++ IK +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+F + YY A ++++D+T+ ++ N+ W R++
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 101
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAGQE+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 58 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 117
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
+ K + R+ +++ + SAK+N N EK F+ LA + + P AP
Sbjct: 118 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 177
Query: 235 DRVTID 240
V +D
Sbjct: 178 PEVVMD 183
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +++T+G++ IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+F + YY A ++ +D+T+ ++ N+ W R++
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL 108
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAGQE+F + YY A ++ +D+T+ ++ N+ W R++ P V
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
+ K + R+ +++ + SAK+N N EK F+ LA + + P AP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXPALAP 184
Query: 235 DRVTID 240
V D
Sbjct: 185 PEVVXD 190
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
K + +GD VGKTC+L ++ + F T ++ T+ +F V + G + L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTA 127
E ++ + YRGA +L + + ++ S++N+ KW+ + H V +++G D
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLR 123
Query: 128 GQERF 132
++F
Sbjct: 124 DDKQF 128
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G ML+ +N D + N + D + LG DTAGQE ++ +
Sbjct: 15 GAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLG-LWDTAGQEDYNRLRPL 73
Query: 139 YYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDPQVV 179
YRGA +L + + ++ S++N+ KW+ + +A P ++
Sbjct: 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIIL 115
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +++T+G++ IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+F + YY A ++++D+T+ ++ N+ W R++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAGQE+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
+ K + R+ +++ + SAK+N N EK F+ LA +
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +++T+G++ IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
++ + YY A ++++D+T+ ++ N+ W R++
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAGQE++ + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 65 DTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
+ K + R+ +++ + SAK+N N EK F+ LA + + P AP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184
Query: 235 DRVTID 240
V +D
Sbjct: 185 PEVVMD 190
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 6/158 (3%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +I+TIG++ + +IK +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+F + YY A ++++D+T+ ++ N+ W R++ E++ ++ G D +
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVK-E 123
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEK--SFDNILKWL 165
+ T +++R + YDI+ + +F+ WL
Sbjct: 124 RKVKAKTITFHRKKN--LQYYDISAKSNYNFEKPFLWL 159
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAG E+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 60 DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKV 119
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLE 232
V K + R+ +++ + SAK+N N EK F+ LA K +G LE
Sbjct: 120 DVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQLE 170
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 6/158 (3%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +I+TIG++ + +IK +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+F + YY A ++++D+T+ ++ N+ W R++ E++ ++ G D +
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVK-E 122
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEK--SFDNILKWL 165
+ T +++R + YDI+ + +F+ WL
Sbjct: 123 RKVKAKTITFHRKKN--LQYYDISAKSNYNFEKPFLWL 158
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAG E+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 59 DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKV 118
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLE 232
V K + R+ +++ + SAK+N N EK F+ LA K +G LE
Sbjct: 119 DVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQLE 169
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F ++ T+G++ IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+F + YY A ++++D+T+ ++ N+ W R++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAGQE+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
+ K + R+ +++ + SAK+N N EK F+ LA +
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
K + +GD VGKTC+L ++ + F T +I T+ +F V + G+ + L +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQ 67
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKD 125
E + + YRGA +L + + ++ S++N+L KW+ + A +V +++G D
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 124
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G ML+ +N+ D I N + D + + LG DTAGQE + +
Sbjct: 18 GAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLG-LWDTAGQEDYSRLRPL 76
Query: 139 YYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDPQVV----------NSWVCKH- 186
YRGA +L + + ++ S++N+L KW+ + A P V+ ++ H
Sbjct: 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHT 136
Query: 187 ------RGEAIAREYG-VRFMETSAKANINIEKAF 214
+GE + ++ G ++E S+K N++ F
Sbjct: 137 NVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L S D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 130 ERFHT 134
E HT
Sbjct: 125 E--HT 127
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 31/166 (18%)
Query: 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE---KMILGKTKDTAGQERFHTITT 137
GA G + + ++ F + ++ + E+ D+E K + DTAGQE + +
Sbjct: 14 GACGKTCLLIVNSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP 71
Query: 138 SYYRGAMGIMLVYDITNEKSFDNIL-KW---------------------LRNIDEHA-NE 174
Y I++ + I + S +NI KW LRN DEH E
Sbjct: 72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN-DEHTRRE 130
Query: 175 DPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
++ V G +A G +ME SAK + + F E+AT
Sbjct: 131 LAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 175
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L S D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 122
Query: 130 ERFHT 134
E HT
Sbjct: 123 E--HT 125
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 31/166 (18%)
Query: 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE---KMILGKTKDTAGQERFHTITT 137
GA G + + ++ F + ++ + E+ D+E K + DTAGQE + +
Sbjct: 12 GACGKTCLLIVNSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP 69
Query: 138 SYYRGAMGIMLVYDITNEKSFDNIL-KW---------------------LRNIDEHA-NE 174
Y I++ + I + S +NI KW LRN DEH E
Sbjct: 70 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN-DEHTRRE 128
Query: 175 DPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
++ V G +A G +ME SAK + + F E+AT
Sbjct: 129 LAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 173
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L S D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 122
Query: 130 ERFHT 134
E HT
Sbjct: 123 E--HT 125
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 31/166 (18%)
Query: 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE---KMILGKTKDTAGQERFHTITT 137
GA G + + ++ F + ++ + E+ D+E K + DTAGQE + +
Sbjct: 12 GACGKTCLLIVNSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP 69
Query: 138 SYYRGAMGIMLVYDITNEKSFDNIL-KW---------------------LRNIDEHA-NE 174
Y I++ + I + S +NI KW LRN DEH E
Sbjct: 70 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN-DEHTRRE 128
Query: 175 DPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
++ V G +A G +ME SAK + + F E+AT
Sbjct: 129 LAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 173
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L S D F ++ T+ ++ I +++ GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQD 124
Query: 130 ERFHT 134
E HT
Sbjct: 125 E--HT 127
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L S D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 130 ERFHT 134
E HT
Sbjct: 125 E--HT 127
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 31/166 (18%)
Query: 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE---KMILGKTKDTAGQERFHTITT 137
GA G + + ++ F + ++ + E+ D+E K + DTAGQE + +
Sbjct: 14 GACGKTCLLIVNSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP 71
Query: 138 SYYRGAMGIMLVYDITNEKSFDNIL-KW---------------------LRNIDEHANED 175
Y I++ + I + S +NI KW LRN DEH +
Sbjct: 72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN-DEHTRRE 130
Query: 176 -PQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
++ V G +A G +ME SAK + + F E+AT
Sbjct: 131 LAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 175
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L S D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 130 ERFHT 134
E HT
Sbjct: 125 E--HT 127
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 31/166 (18%)
Query: 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE---KMILGKTKDTAGQERFHTITT 137
GA G + + ++ F + ++ + E+ D+E K + DTAGQE + +
Sbjct: 14 GACGKTCLLIVNSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP 71
Query: 138 SYYRGAMGIMLVYDITNEKSFDNIL-KW---------------------LRNIDEHA-NE 174
Y I++ + I + S +NI KW LRN DEH E
Sbjct: 72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN-DEHTRRE 130
Query: 175 DPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
++ V G +A G +ME SAK + + F E+AT
Sbjct: 131 LAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 175
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
MA + K +++GD VGKTC+L +++DAF ++ T+ D +V + GK+ L
Sbjct: 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 68
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMI 119
++DTAGQE + + Y ++ + + N SF N+ +W+ + E+A +V ++
Sbjct: 69 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLL 127
Query: 120 LGKTKD 125
+G D
Sbjct: 128 IGTQID 133
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 23/120 (19%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA----------- 172
DTAGQE + + Y ++ + + N SF N+ +W+ + E+A
Sbjct: 72 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQ 131
Query: 173 ---NEDPQVV-------NSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+DP+ + +C +G+ +A+E G ++E SA ++ F E AI
Sbjct: 132 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R +++T+G++ IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+F + YY A ++++D+T+ ++ N+ W R++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAGQE+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 129
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
+ K + R+ +++ + SAK+N N EK F+ LA + + P AP
Sbjct: 130 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 189
Query: 235 DRVTID 240
V +D
Sbjct: 190 PEVVMD 195
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +++T+G++ IK +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+F + YY A ++++D+T+ ++ N+ W R++
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAG E+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 65 DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
+ K + R+ +++ + SAK+N N EK F+ LA + + P AP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184
Query: 235 DRVTID 240
V +D
Sbjct: 185 PEVVMD 190
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +++T+G++ IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+F + YY A ++++D+T+ ++ N+ W R++
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 110
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAG E+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 67 DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 126
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
+ K + R+ +++ + SAK+N N EK F+ LA
Sbjct: 127 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 167
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +++T+G++ IK +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+F + YY A ++++D+T+ ++ N+ W R++
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 104
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
DTAG E+F + YY A ++++D+T+ ++ N+ W R++ P V
Sbjct: 61 DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 120
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
+ K + R+ +++ + SAK+N N EK F+ LA +
Sbjct: 121 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 54/213 (25%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + + + F + TI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAG 128
+ + Y R G + V+ I N KSF++I ++ I ++DV +++G D AG
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
R ++ +D
Sbjct: 123 -------------------------------------RTVESRQAQD------------- 132
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
+AR YG+ ++ETSAK +E AF L I
Sbjct: 133 --LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 5/125 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L S D F ++ T+ ++ + +++ GK+++L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +H +V +++G KD
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 127
Query: 130 ERFHT 134
E HT
Sbjct: 128 E--HT 130
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 31/166 (18%)
Query: 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE---KMILGKTKDTAGQERFHTITT 137
GA G + + ++ F + ++ + E+ D+E K + DTAG E + +
Sbjct: 17 GACGKTCLLIVNSKDQFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRP 74
Query: 138 SYYRGAMGIMLVYDITNEKSFDNIL-KW---------------------LRNIDEHA-NE 174
Y I++ + I + S +NI KW LRN DEH E
Sbjct: 75 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN-DEHTRRE 133
Query: 175 DPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219
++ V G +A G +ME SAK + + F E+AT
Sbjct: 134 LAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMAT 178
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 37/140 (26%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK------------- 56
+K +L+G+S VGK+ ++ R + D F+ +TIG F V+L
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 57 ------------------------KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT 92
IK IWDTAGQER+ +I YYRGA ++V+DI+
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 93 NEKSFDNILKWLRNIDEHAN 112
N + D W+ + +N
Sbjct: 128 NSNTLDRAKTWVNQLKISSN 147
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
DTAGQER+ +I YYRGA ++V+DI+N + D W+ + +N +V + +
Sbjct: 99 DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158
Query: 185 KHRGEA-------IAREYGVRFMETSAKANINIEKAFIELATAIY 222
K++ + A++ + F++TSAK NI+ F LA IY
Sbjct: 159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K++++GD VGKTC+L FS T ++ T+ +F + K ++ L +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 82
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMIL 120
+ + Y + ++L + + N SFDNI KW I + D K +L
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVL 132
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVNSW- 182
DTAGQE + + Y + ++L + + N SFDNI KW I + + V+
Sbjct: 77 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLK 136
Query: 183 ----------VCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIY 222
V K G+ + ++ G V ++E S+ A I + + F + I+
Sbjct: 137 VDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 54/213 (25%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + + + F + TI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAG 128
+ + Y R G + V+ I N KSF++I ++ I ++DV +++G D A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
R ++ +D
Sbjct: 123 -------------------------------------RTVESRQAQD------------- 132
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
+AR YG+ ++ETSAK +E AF L I
Sbjct: 133 --LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K++++GD VGKTC+L FS T ++ T+ +F + K ++ L +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 81
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMIL 120
+ + Y + ++L + + N SFDNI KW I + D K +L
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVL 131
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVNSW- 182
DTAGQE + + Y + ++L + + N SFDNI KW I + + V+
Sbjct: 76 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLK 135
Query: 183 ----------VCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIY 222
V K G+ + ++ G V ++E S+ A I + + F + I+
Sbjct: 136 VDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
DTAGQE F + Y R G +LV+ +T+ SF+ I K+ R I + D P ++
Sbjct: 59 DTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGN 118
Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
V + G+ +AR+ V +ME SAK +N+++AF EL I
Sbjct: 119 KADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 54/213 (25%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + + + F + TI ++ K V + G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAG 128
+ + Y R G + V+ I N KSF++I + I +EDV +++G D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
R +D +D
Sbjct: 124 -------------------------------------RTVDTKQAQD------------- 133
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
+AR YG+ F+ETSAK ++ AF L I
Sbjct: 134 --LARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 54/213 (25%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + + + F + TI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAG 128
+ + Y R G + V+ I N KSF++I ++ I ++DV +++G D A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
R ++ +D
Sbjct: 123 -------------------------------------RTVESRQAQD------------- 132
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
+AR YG+ ++ETSAK +E AF L I
Sbjct: 133 --LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 54/213 (25%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + + + F + TI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAG 128
+ + Y R G + V+ I N KSF++I ++ I ++DV +++G D A
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
R ++ +D
Sbjct: 123 -------------------------------------RTVESRQAQD------------- 132
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
+AR YG+ ++ETSAK +E AF L I
Sbjct: 133 --LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 70
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ +AF+ +I T+ D V + GK + L +WDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 115
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN S + I N + D + + LG DTAGQE + +
Sbjct: 22 GAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 80
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 81 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 140
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 141 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 186
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 54/213 (25%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + + + F + TI ++ K V + G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAG 128
+ + Y R G + V+ I N KSF++I + I +EDV +++G D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
R +D +D
Sbjct: 124 -------------------------------------RTVDTKQAQD------------- 133
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
+AR YG+ F+ETSAK ++ AF L I
Sbjct: 134 --LARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 70
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 70
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 106
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 13 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 71
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 72 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLR 131
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+ARE G V+++E SA ++ F E A+
Sbjct: 132 DKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 132
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 39 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 97
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 157
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 158 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 106
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 13 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 71
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 72 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLR 131
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+ARE G V+++E SA ++ F E A+
Sbjct: 132 DKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC 107
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 14 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 72
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 132
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 133 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC 105
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 70
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 71 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 70
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 70
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 70
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLR 130
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+ARE G V+++E SA ++ F E A+
Sbjct: 131 DKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 70
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC 105
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 70
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 71 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 81
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 124
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 31 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 89
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 90 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 149
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 150 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 195
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC 109
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 16 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 74
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 75 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 134
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 135 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 180
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 53/214 (24%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K++++G GVGK+ + +F D F + T ++ K V L G+++++ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTA 127
E + I +Y+R G + V+ IT +SF + I +E+V +++G D
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 131
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
ED + V+ K+R
Sbjct: 132 ----------------------------------------------EDKRQVSVEEAKNR 145
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
E ++ V ++ETSAK N++K F +L I
Sbjct: 146 AE----QWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 54/218 (24%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K++++G GVGK+ + +F D F + T ++ K V L G+++++ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANED-VEKMILGKTKDT 126
E + I +Y+R G +LV+ IT +SF ++ I A ED + +++G D
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
+ER V
Sbjct: 126 --EER-------------------------------------------------RQVPVE 134
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+ A E+GV+++ETSAK N++K F +L I K
Sbjct: 135 EARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 54/218 (24%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K++++G GVGK+ + +F D F + T ++ K V L G+++++ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANED-VEKMILGKTKDT 126
E + I +Y+R G +LV+ IT +SF ++ I A ED + +++G D
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
+ER V
Sbjct: 122 --EER-------------------------------------------------RQVPVE 130
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+ A E+GV+++ETSAK N++K F +L I K
Sbjct: 131 EARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 53/214 (24%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K++++G GVGK+ + +F D F + T ++ K V L G+++++ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTA 127
E + I +Y+R G + V+ IT +SF + I +E+V +++G D
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 135
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
ED + V+ K+R
Sbjct: 136 ----------------------------------------------EDKRQVSVEEAKNR 149
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
E ++ V ++ETSAK N++K F +L I
Sbjct: 150 AE----QWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 53/214 (24%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K++++G GVGK+ + +F D F + T ++ K V L G+++++ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTA 127
E + I +Y+R G + V+ IT +SF + I +E+V +++G D
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 123
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
ED + V+ K+R
Sbjct: 124 ----------------------------------------------EDKRQVSVEEAKNR 137
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
E ++ V ++ETSAK N++K F +L I
Sbjct: 138 AE----QWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGK C+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 112
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 19 GAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 77
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 78 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 137
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 138 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +A +I T+ D V + GK + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 132
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 39 GAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGQEDYDRLRPL 97
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 157
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 158 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 53/214 (24%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K++++G GVGK+ + +F D F + T ++ K V L G+++++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTA 127
E + I +Y+R G + V+ IT +SF + I +E+V +++G D
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 121
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
ED + V+ K+R
Sbjct: 122 ----------------------------------------------EDKRQVSVEEAKNR 135
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
A ++ V ++ETSAK N++K F +L I
Sbjct: 136 ----ADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 109
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + K + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + S++N+ KW + H
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC 105
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 26/173 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLG-LWDTAGQEDYDRLRPL 70
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + S++N+ KW + H P ++
Sbjct: 71 SYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLK 130
Query: 181 ----SWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIYDKTSGR 228
+ + +G A+A+E V+++E SA ++ F E A+ R
Sbjct: 131 EKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR 183
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAG E + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGLEDYDRLRPL 70
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAG E + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGLEDYDRLRPL 70
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 130
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 131 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 56/215 (26%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + +F F + TI ++ K V++ ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN--IDEHANEDVEKMILGKTKDTA 127
+F + Y + G LVY IT + +F N L+ LR + EDV +++G D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDL- 120
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
ED +VV K +
Sbjct: 121 ----------------------------------------------EDERVVG----KEQ 130
Query: 188 GEAIAREY-GVRFMETSAKANINIEKAFIELATAI 221
G+ +AR++ F+E+SAK+ IN+ + F +L I
Sbjct: 131 GQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 52/213 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + +F F + TI ++ K V++ ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+F + Y + G LVY IT + +F+++ +D+ + IL + KDT
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDL------------QDLREQIL-RVKDT--- 106
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ ++LV + + ED +VV K +G+
Sbjct: 107 ------------DDVPMILVGNKCDL------------------EDERVVG----KEQGQ 132
Query: 190 AIAREY-GVRFMETSAKANINIEKAFIELATAI 221
+AR++ F+E+SAK+ IN+ + F +L I
Sbjct: 133 NLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 56/215 (26%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + +F F + TI ++ K V++ ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN--IDEHANEDVEKMILGKTKDTA 127
+F + Y + G LVY IT + +F N L+ LR + EDV +++G D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDL- 120
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
ED +VV K +
Sbjct: 121 ----------------------------------------------EDERVVG----KEQ 130
Query: 188 GEAIAREY-GVRFMETSAKANINIEKAFIELATAI 221
G+ +AR++ F+E+SAK+ IN+ + F +L I
Sbjct: 131 GQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 65
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 108
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAG E + +
Sbjct: 15 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGLEDYDRLRPL 73
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 74 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 133
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 134 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 179
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 89
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW + H
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 132
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 26/166 (15%)
Query: 81 GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
GA+G +L+ TN + I N + D + + LG DTAG E + +
Sbjct: 39 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG-LWDTAGLEDYDRLRPL 97
Query: 139 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN----------------- 180
Y ++ + + + SF+N+ KW + H P ++
Sbjct: 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLK 157
Query: 181 ----SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E G V+++E SA ++ F E A+
Sbjct: 158 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + K + L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 68
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTK 124
+ + Y ++ + + + S++N+ KW + H +IL TK
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPS--TPIILVGTK 122
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 23/120 (19%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN--- 180
DTAGQE + + Y ++ + + + S++N+ KW + H P ++
Sbjct: 63 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 122
Query: 181 ------------------SWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E V+++E SA ++ F E A+
Sbjct: 123 LDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 107
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 59 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 111
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 109
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +L+GD VGKT ++ ++ + + T +I T +F V + G+ ++LQ+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDE 80
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
F + Y +L + + + SF N+ KW+ I H
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC 122
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQ+ F + Y +L + + + SF N+ KW+ I H + P
Sbjct: 74 DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP 126
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 115
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 23/127 (18%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA----------- 172
DTAGQE + + Y ++ + + + SF+N+ KW+ I H
Sbjct: 67 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 126
Query: 173 ---NEDPQVVNSW-------VCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAI 221
+DP + + E +AR+ V+++E SA ++ F E A
Sbjct: 127 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 186
Query: 222 YDKTSGR 228
+ +
Sbjct: 187 LEPPEPK 193
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 109
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 108
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 60 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 112
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 108
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 60 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 112
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 23/127 (18%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA----------- 172
DTAGQE + + Y ++ + + + SF+N+ KW+ I H
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
Query: 173 ---NEDPQVVNSW-------VCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAI 221
+DP + + E +AR+ V+++E SA ++ F E A
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 222 YDKTSGR 228
+ +
Sbjct: 177 LEPPEPK 183
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 112
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 116
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 52/213 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + +F F + TI ++ K V++ ++ L+I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+F + Y + G LVY IT + +F+++ +D+ + IL + KDT
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDL------------QDLREQIL-RVKDT--- 108
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
D++ L ++ ED +VV K +G+
Sbjct: 109 -----------------------------DDVPMILVG-NKCDLEDERVVG----KEQGQ 134
Query: 190 AIAREY-GVRFMETSAKANINIEKAFIELATAI 221
+AR++ F+E+SAK+ IN+ + F +L I
Sbjct: 135 NLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + K + L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 69
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
+ + Y ++ + + + S++N+ KW + H
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC 112
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 23/120 (19%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDPQVVN--- 180
DTAGQE + + Y ++ + + + S++N+ KW + H P ++
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 123
Query: 181 ------------------SWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAI 221
+ + +G A+A+E V+++E SA ++ F E A+
Sbjct: 124 LDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 106
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 58 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 110
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L S F ++ T+ ++ + V++ G++++L +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKD 125
+ + Y + +++ + I S +N+ KW+ + H + V +++G D
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVD 125
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 29/165 (17%)
Query: 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE---KMILGKTKDTAGQERFHTITT 137
GA G + + ++ F + ++ + E+ DVE + + DTAGQE + +
Sbjct: 19 GACGKTCLLIVNSKGQFPEV--YVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRP 76
Query: 138 SYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHAN--------------EDPQVVNSW 182
Y + +++ + I S +N+ KW+ + DPQ +
Sbjct: 77 LSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQL 136
Query: 183 -------VCKHRGEAIAREYGVR-FMETSAKANINIEKAFIELAT 219
V G+++A + G + E SAK + + F E AT
Sbjct: 137 RQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF-EAAT 180
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 109
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 109
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 109
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 109
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 109
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 61 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 113
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 109
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 107
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 59 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 111
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 53/214 (24%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K++++G GVGK+ + +F D F + T ++ K V L G+++++ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTA 127
E + I +Y+R G + V+ IT +SF + I +E+V +++G D
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 123
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
ED + V+ K+R
Sbjct: 124 ----------------------------------------------EDKRQVSVEEAKNR 137
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
E ++ V ++ETSAK N++K F +L I
Sbjct: 138 AE----QWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K++++GDS GKT +L F+ D F ++ T+ ++ + ++ ++I+L +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 88
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKD 125
+ + Y + +++ +DI+ ++ D++L KW I E + + +++G D
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSD 143
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDE 170
DT+G + + Y + +++ +DI+ ++ D++L KW I E
Sbjct: 82 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 128
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K++++GDS GKT +L F+ D F ++ T+ ++ + ++ ++I+L +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 83
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKD 125
+ + Y + +++ +DI+ ++ D++L KW I E + + +++G D
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSD 138
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDE 170
DT+G + + Y + +++ +DI+ ++ D++L KW I E
Sbjct: 77 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 123
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K++++GDS GKT +L F+ D F ++ T+ ++ + ++ ++I+L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 67
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKD 125
+ + Y + +++ +DI+ ++ D++L KW I E + + +++G D
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSD 122
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDE 170
DT+G + + Y + +++ +DI+ ++ D++L KW I E
Sbjct: 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 107
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
E + + Y ++ + + + SF ++ KW + H
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
E + + Y ++ + + + SF ++ KW + H
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
E + + Y ++ + + + SF ++ KW + H
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGK C+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 112
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 116
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 116 EKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANE 174
E LG +DTAGQE + + Y ++ + + + SF+N+ KW+ I H +
Sbjct: 49 EPYTLG-LRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 175 DP 176
P
Sbjct: 108 TP 109
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ + ++ + TV + G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 109
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 21/122 (17%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 70 RFHTITTSYYRGAMG-------------------IMLVYDITNEKSFDNI-LKWLRNIDE 109
+ + Y +G ++ + + + SF+N+ KW +
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 110 HA 111
H
Sbjct: 125 HC 126
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ + + ++ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAGQE + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 109
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 64 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 123
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 124 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 62 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 121
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 122 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 62 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 121
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 122 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 63 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 122
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 123 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
+ + Y ++ + + + SF+N+ KW+ I H
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 23/127 (18%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA----------- 172
DTAG E + + Y ++ + + + SF+N+ KW+ I H
Sbjct: 57 DTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
Query: 173 ---NEDPQVVNSW-------VCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAI 221
+DP + + E +AR+ V+++E SA ++ F E A
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 222 YDKTSGR 228
+ +
Sbjct: 177 LEPPEPK 183
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 RCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ + F + ++ T+ ++ + TV + G+ L ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANE 113
+ + Y ++ + + + SF+N+ KW+ I H +
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 111
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDP 176
DTAG E + + Y ++ + + + SF+N+ KW+ I H + P
Sbjct: 61 DTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP 113
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIEL 217
C + + +AR YG+ ++ETSAK +E AF L
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
V + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DT GQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
V + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DT GQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAG+E + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+L+GD GKT +L + D + T++ T+ ++ ++ + ++++L +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 71
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKT 123
+ + Y + ++L +DI+ ++ D+ L KW I ++ +I KT
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKT 125
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+L+GD GKT +L + D + T++ T+ ++ ++ + ++++L +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKT 123
+ + Y + ++L +DI+ ++ D+ L KW I ++ +I KT
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKT 141
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+L+GD GKT +L + D + T++ T+ ++ ++ + ++++L +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKT 123
+ + Y + ++L +DI+ ++ D+ L KW I ++ +I KT
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKT 124
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAG E + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAG E + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 62 DTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 121
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 122 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 50/208 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+++ + G GVGK+ ++ RF F ++I T+ ++ + + LQI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+F + +LVY IT+ +S + + I E DVE
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE-IKGDVE------------- 108
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
++ IMLV + DE + + Q E
Sbjct: 109 -------------SIPIMLVGN---------------KCDESPSREVQ-------SSEAE 133
Query: 190 AIAREYGVRFMETSAKANINIEKAFIEL 217
A+AR + FMETSAK N N+++ F EL
Sbjct: 134 ALARTWKCAFMETSAKLNHNVKELFQEL 161
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAG E + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAG E + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAG E + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAG E + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 11/100 (11%)
Query: 2 AKKTYDFLF-----KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK 56
A K + LF ++L++G G GKT VL++ TT I TIG F ++TV K
Sbjct: 5 ASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQYK-- 59
Query: 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 96
I +WD GQ+R ++ YYR G++ V D +N++S
Sbjct: 60 NISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVID-SNDRS 98
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 157
D GQ+R ++ YYR G++ V D +N++S
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVID-SNDRS 98
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAGQE + + Y R G + V+ I N KSF +I + I + D P V+
Sbjct: 75 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGN 134
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + +A+ YG+ F+ETSAK +E AF L I
Sbjct: 135 KCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + + + F + TI ++ K V + G+ L I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKD--- 125
+ + Y R G + V+ I N KSF +I + I ++DV +++G D
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140
Query: 126 -TAGQERFHTITTSY 139
T ++ H + SY
Sbjct: 141 RTVDTKQAHELAKSY 155
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 11/100 (11%)
Query: 2 AKKTYDFLF-----KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK 56
A K + LF ++L++G G GKT VL++ TT I TIG F ++TV K
Sbjct: 5 ASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQYK-- 59
Query: 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 96
I +WD GQ+R ++ YYR G++ V D +N++S
Sbjct: 60 NISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVD-SNDRS 98
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 157
D GQ+R ++ YYR G++ V D +N++S
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVVD-SNDRS 98
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAG E + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
DTAGQE + + Y R G + V+ I N KSF++I + I + + P V+
Sbjct: 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
+ V + + +AR YG+ F+ETSAK ++ AF L I
Sbjct: 118 KSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
DTAGQE + + Y R G + V+ I N KSF++I + I + + P V+
Sbjct: 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
+ V + + +AR YG+ F+ETSAK ++ AF L I
Sbjct: 118 KSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
DTA QE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
V + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
DTA QE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
V + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G G GKT VL++ TT I TIG F ++TV K I +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQYK--NISFTVWDVGGQD 55
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKS 96
R ++ YYR G++ V D +N++S
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVD-SNDRS 81
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 157
D GQ+R ++ YYR G++ V D +N++S
Sbjct: 50 DVGGQDRIRSLWRHYYRNTEGVIFVVD-SNDRS 81
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I T+G F ++TV K +K +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQD 377
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
+ + YY G G++ V D + D + L R I++ D +I +D
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 129 QERFHTI 135
+ H I
Sbjct: 438 AMKPHEI 444
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168
D GQ++ + YY G G++ V D + D + L I
Sbjct: 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 415
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
DTAG E + + Y R G + V+ I N KSF++I + I + + P V+
Sbjct: 75 DTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 134
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
C + + +AR YG+ F+ETSAK ++ AF L I
Sbjct: 135 KCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW----LRNIDEHANEDPQVVN 180
DTAGQE F + Y R G ++VY +T++ SF+++ ++ LR D + V N
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131
Query: 181 SW-------VCKHRGEAIAREYGVRFMETSAK-ANINIEKAFIELATAI 221
V + +G+ +A +Y + ++ETSAK +N++K F +L I
Sbjct: 132 KVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I T+G F ++TV K +K +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQD 55
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
+ + YY G G++ V D + D + L R I++ D +I +D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 129 QERFHTI 135
+ H I
Sbjct: 116 AMKPHEI 122
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I T+G F ++TV K +K +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQD 55
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
+ + YY G G++ V D + D + L R I++ D +I +D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 129 QERFHTI 135
+ H I
Sbjct: 116 AMKPHEI 122
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW----LRNIDEHANEDPQVVN 180
DTAGQE F + Y R G ++VY +T++ SF+++ ++ LR D + V N
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131
Query: 181 SW-------VCKHRGEAIAREYGVRFMETSAK-ANINIEKAFIELATAI 221
V + +G+ +A +Y + ++ETSAK +N++K F +L I
Sbjct: 132 KVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW----LRNIDEHANEDPQVVN 180
DTAGQE F + Y R G ++VY +T++ SF+++ ++ LR D + V N
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131
Query: 181 SW-------VCKHRGEAIAREYGVRFMETSAK-ANINIEKAFIELATAI 221
V + +G+ +A +Y + ++ETSAK +N++K F +L I
Sbjct: 132 KVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW----LRNIDEHANEDPQVVN 180
DTAGQE F + Y R G ++VY +T++ SF+++ ++ LR D + V N
Sbjct: 67 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 126
Query: 181 SW-------VCKHRGEAIAREYGVRFMETSAK-ANINIEKAFIELATAI 221
V + +G+ +A +Y + ++ETSAK +N++K F +L I
Sbjct: 127 KVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I T+G F ++TV K +K +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQD 68
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
+ + YY G G++ V D + D + L R I++ D +I +D
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 129 QERFHTI 135
+ H I
Sbjct: 129 AMKPHEI 135
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168
D GQ++ + YY G G++ V D + D + L I
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 106
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 51/197 (25%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K+ ++G VGK+ + +F + F ++ TI F K + + G++ LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
+ +Y G +LVY +T+ KSF+ I K+I GK D G+
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVI----------------KVIHGKLLDMVGKV 110
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
+ + IMLV N+K D H + + G+A
Sbjct: 111 Q------------IPIMLV---GNKK------------DLH-------MERVISYEEGKA 136
Query: 191 IAREYGVRFMETSAKAN 207
+A + F+E+SAK N
Sbjct: 137 LAESWNAAFLESSAKEN 153
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I T+G F ++TV K +K +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQD 67
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
+ + YY G G++ V D + D + L R I++ D +I +D
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
Query: 129 QERFHTI 135
+ H I
Sbjct: 128 AMKPHEI 134
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168
D GQ++ + YY G G++ V D + D + L I
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 105
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 51/197 (25%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K+ ++G VGK+ + +F + F ++ TI F K + + G++ LQ+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
+ +Y G +LVY +T+ KSF+ I K+I GK D G+
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVI----------------KVIHGKLLDMVGKV 105
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
+ + IMLV N+K D H + + G+A
Sbjct: 106 Q------------IPIMLV---GNKK------------DLH-------MERVISYEEGKA 131
Query: 191 IAREYGVRFMETSAKAN 207
+A + F+E+SAK N
Sbjct: 132 LAESWNAAFLESSAKEN 148
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K++++G VGKT + +F + F+ + T+ + K V L + L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAGQ 129
+ + S+ G G +LVY +T+ SF I + + E H V +++G D + +
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 130 ERFHTI 135
+
Sbjct: 145 REVQAV 150
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDPQVV---- 179
DTAGQ+ + + S+ G G +LVY +T+ SF I + + E H VV
Sbjct: 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137
Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
V G+ +A +G FME+SA+ N + F ++ I
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
++L +G GKT +L++ TT I T+G F ++TV K +K +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQDK 56
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAGQ 129
+ YY G G++ V D + D + L R I++ D +I +D
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDA 116
Query: 130 ERFHTI 135
+ H I
Sbjct: 117 XKPHEI 122
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168
D GQ++ + YY G G++ V D + D + L I
Sbjct: 50 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 93
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 51/197 (25%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K+ ++G VGK+ + +F + F ++ TI F K + + G++ LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
+ +Y G +LVY +T+ KSF+ I K+I GK D G+
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVI----------------KVIHGKLLDMVGKV 110
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
+ + IMLV N+K D H + + G+A
Sbjct: 111 Q------------IPIMLV---GNKK------------DLH-------MERVISYEEGKA 136
Query: 191 IAREYGVRFMETSAKAN 207
+A + F+E+SAK N
Sbjct: 137 LAESWNAAFLESSAKEN 153
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
DTAGQE F + Y R G +LV+ I + +SF+ + K I + D P V+
Sbjct: 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 122
Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
V + A + V + E SAK +N+++AF +L A+
Sbjct: 123 KADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 17/161 (10%)
Query: 22 KTCVLFRFSDDAFNTTFISTIGIDF-KIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR 80
K+ + +F F + + TI + KI +VD G +L I DTAGQE F + Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVD--GIPARLDILDTAGQEEFGAMREQYMR 79
Query: 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTS- 138
G +LV+ I + +SF+ + K I + +D +++G D Q + S
Sbjct: 80 AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA 139
Query: 139 --------YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 171
Y+ + + L D ++F+ +++ +R E
Sbjct: 140 FGASHHVAYFEASAKLRLNVD----EAFEQLVRAVRKYQEQ 176
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+L L+G GKT + + FN I T+G + + T KG + +++WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT---KGN-VTIKLWDIGGQP 78
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN-IDEHANEDVEKMILGKTKDTAG 128
RF ++ Y RG I+ + D +++ + L N +D+ + + ++LG +D G
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN----IDEHANEDPQVVN 180
DTAG E+F ++ Y + G +LVY + N++SF +I K +R+ + + +V
Sbjct: 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVG 115
Query: 181 SWV--------CKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
+ V G A+A E+G FMETSAK+ +++ F E+
Sbjct: 116 NKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 22 KTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRG 81
K+ + +F F + TI DF K +++ L+I DTAG E+F ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 82 AMGIMLVYDITNEKSFDNI 100
G +LVY + N++SF +I
Sbjct: 75 GQGFILVYSLVNQQSFQDI 93
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+L L+G GKT + + FN I T+G + + T KG + +++WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT---KGN-VTIKLWDIGGQP 87
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN-IDEHANEDVEKMILGKTKDTAG 128
RF ++ Y RG I+ + D +++ + L N +D+ + + ++LG +D G
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 147
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 51/197 (25%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K+ ++G VGK+ + +F + F + TI F K + + G++ LQ+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
+ +Y G +LVY +T+ KSF+ I K+I GK D G+
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVI----------------KVIHGKLLDMVGKV 108
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
+ + IMLV N+K D H + + G+A
Sbjct: 109 Q------------IPIMLV---GNKK------------DLH-------MERVISYEEGKA 134
Query: 191 IAREYGVRFMETSAKAN 207
+A + F+E+SAK N
Sbjct: 135 LAESWNAAFLESSAKEN 151
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I T+G F ++TV K +K +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGLD 58
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
+ + YY G G++ V D + D + L R I++ D +I +D
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 118
Query: 129 QERFHTI 135
+ H I
Sbjct: 119 AMKPHEI 125
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I T+G F ++TV K +K +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGLD 57
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
+ + YY G G++ V D + D + L R I++ D +I +D
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 117
Query: 129 QERFHTI 135
+ H I
Sbjct: 118 AMKPHEI 124
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I T+G F ++TV K +K +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGLD 68
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
+ + YY G G++ V D + D + L R I++ D +I +D
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 129 QERFHTI 135
+ H I
Sbjct: 129 AMKPHEI 135
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL + G +GVGK+ ++ RF F + T+ ++ + + + + ++I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQE- 87
Query: 71 FHTIT-TSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
TI + R G +LVYDIT+ SF+ +L L+NI
Sbjct: 88 -DTIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNI 123
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 125 DTAGQERFHTIT-TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV---- 179
DTAGQE TI + R G +LVYDIT+ SF+ +L L+NI + + V
Sbjct: 82 DTAGQE--DTIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILV 138
Query: 180 --------NSWVCKHRGEAIAREYGVRFMETSA-KANINIEKAFIELATAI 221
+ V GE +A E F E SA NI + F EL +
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
++L++G GKT +L++ TT I TIG F ++TV+ + I +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVVTT-IPTIG--FNVETVEFRN--ISFTVWDVGGQDK 73
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKD 125
+ YY G++ V D + + D+ + L R I+E +D ++ +D
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQD 129
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 2 AKKTYDFLF-----KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK 56
A K + LF ++L++G G GKT VL++ TT I TIG F ++ V
Sbjct: 5 ASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVECVQYC-- 59
Query: 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS----FDNILKWLRNIDEHAN 112
I +WD GQ+R ++ YY G++ V D +N++S +++ + N DE N
Sbjct: 60 NISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVD-SNDRSRIGEAREVMQRMLNEDELCN 118
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+L L+G GKT + + F+ I T+G + + T KG + ++IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT---KGN-VTIKIWDIGGQP 78
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN-IDEHANEDVEKMILGKTKD 125
RF ++ Y RG I+ + D + + + L N +D+ + + ++LG +D
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 135
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 16/111 (14%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I TIG F ++TV+ K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NICFTVWDVGGQD 72
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
R + Y++ G++ V D +N++ I E A+E ++KM+L
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVD-SNDRE---------RIQEVADE-LQKMLL 112
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I TIG F ++TV+ K I +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGQD 220
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
+ + Y++ G++ V D
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVD 241
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 11 KLLLIGDSGVGKTCVLFRF-----SDDAFNTTFISTIGIDFK---IKTVDLKGKKIKLQI 62
KL ++G++G GKT +L + SD + +T+GID K I+ D + + + L +
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQS---ATVGIDVKDWPIQIRDKRKRDLVLNV 58
Query: 63 WDTAGQERFHTITTSYYRGAMGIMLVYDITN-EKSFDNILKWLRNIDEHAN 112
WD AG+E F++ + + VYD++ + D WL NI A+
Sbjct: 59 WDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARAS 109
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I TIG F ++TV+ K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGQD 72
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
+ + YY+ I+ V D
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVD 93
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 11 KLLLIGDSGVGKTCVLFRF-----SDDAFNTTFISTIGIDFK---IKTVDLKGKKIKLQI 62
KL ++G++G GKT +L + SD + +T+GID K I+ D + + + L +
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQS---ATVGIDVKDWPIQIRDKRKRDLVLNV 60
Query: 63 WDTAGQERFHTITTSYYRGAMGIMLVYDITN-EKSFDNILKWLRNIDEHAN 112
WD AG+E F++ + + VYD++ + D WL NI A+
Sbjct: 61 WDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARAS 111
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed
With Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain
Carrying The Mutation Of The Catalytic Glutamate To
Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I TIG F ++TV+ K I +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGQD 55
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
+ + Y++ G++ V D
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVD 76
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I TIG F ++TV+ K I +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGQD 75
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 114
+ + Y++ G++ V D +N++ D +++ + NED
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVD-SNDR--DRVVEARDELHRMLNED 117
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Monomeric Crystal Form
Length = 181
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I TIG F ++TV+ K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGQD 72
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
+ + Y++ G++ V D
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVD 93
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I TIG F ++TV+ K I +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGQD 71
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
+ + Y++ G++ V D
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVD 92
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G G GKT +L+R TT TIG F ++T L K +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG--FNVET--LSYKNLKLNVWDLGGQT 73
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR-NIDEHANEDVEKMILGKTKDTAG 128
YY ++ V D T++ K L + E +D ++ +D G
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+LL++G GKT +L +F+ + +T T+G F IKT++ +G KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+ +Y+ G++ V D + + + + L+++
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+LL++G GKT +L +F+ + +T T+G F IKT++ +G KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+ +Y+ G++ V D + + + + L+++
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+LL++G GKT +L +F+ + +T T+G F IKT++ +G KL IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDT-ISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 71
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+ +Y+ G++ V D + + + + L+++
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 109
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G G GKT +L+R TT I TIG F ++TV K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYKN--LKFQVWDLGGQT 57
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
YY ++ V D
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVD 78
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I TIG F ++TV+ K I +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NICFTVWDVGGQD 84
Query: 70 RFHTITTSYYRGAMGIMLVYDITN----EKSFDNILKWLR 105
+ + Y++ G++ V D + ++S D + K L+
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ 124
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDA--FNTTFISTIGIDFKIKTVDLKGKKIKLQIW--DTA 66
K+ ++G++ VGK+ ++ F+ F + T G++ + V + + ++++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMI 119
G + + + Y+ G +LV+D+++ +SF++ W + + A D E+ +
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELL-KSARPDRERPL 133
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/75 (18%), Positives = 37/75 (49%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
DTAG + + + Y+ G +LV+D+++ +SF++ W + + + + + +
Sbjct: 79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138
Query: 185 KHRGEAIAREYGVRF 199
++ + + + VR
Sbjct: 139 ANKTDLPPQRHQVRL 153
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN---ILKWLRNIDEHANEDPQVVNS 181
DT G +F + +LV+ +T+++S + I K + I + P ++
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121
Query: 182 WVC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELAT 219
C +A+A+E+ FMETSAK N N+++ F EL T
Sbjct: 122 NKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In
Complex With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I TIG F ++TV+ K I +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGLD 57
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
+ + Y++ G++ V D
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVD 78
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
+ +LL++G GKT +L +F+ + +T T+G F IKT++ +G KL IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLG--FNIKTLEHRG--FKLNIWDVGGL 55
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
+ + +Y+ G++ V D + + + + L+++
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 94
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G G GKT +L+R TT I TIG F ++TV K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYK--NLKFQVWDLGGLT 59
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
YY ++ V D
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVD 80
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV-DLKG-------KKIKLQ 61
K+ LIGD GKT +L + + F+ T G++ K ++KG K+
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
WD GQE H + + ML+ D ++ N WLR+I+++ + +++
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGGKSPVIVVMN 158
Query: 122 KTKDTAG--------QERFHTITTSYYR 141
K + ERF I ++R
Sbjct: 159 KIDENPSYNIEQKKINERFPAIENRFHR 186
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
++L++G G GKT +L+R TT I TIG F ++TV K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYK--NLKFQVWDLGGLTS 63
Query: 71 FHTITTSYYRGAMGIMLVYD 90
YY ++ V D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVD 83
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQI 62
K D ++LL+G GKT +L + + + + T G F IK+V +G KL +
Sbjct: 11 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSVQSQG--FKLNV 65
Query: 63 WDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 98
WD GQ + SY+ ++ V D + K F+
Sbjct: 66 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 101
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQI 62
K D ++LL+G GKT +L + + + + T G F IK+V +G KL +
Sbjct: 10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSVQSQG--FKLNV 64
Query: 63 WDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 98
WD GQ + SY+ ++ V D + K F+
Sbjct: 65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 100
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYY 79
GKT +L +F+ + +T T+G F IKT++ +G KL IWD GQ+ + +Y+
Sbjct: 29 AGKTTILKKFNGEDVDT-ISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYF 83
Query: 80 RGAMGIMLVYDITNEKSFDNILKWLRNI 107
G++ V D + + + + L+++
Sbjct: 84 ESTDGLIWVVDSADRQRXQDCQRELQSL 111
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
++LL+G GKT +L + + + + T G F IK+V +G KL +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRK 60
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFD 98
SY+ ++ V D + K F+
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KLL +G GKT +L +D ++T+ + + +L IK +D G +
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDR-----LATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 57
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNI---LKWLRNIDEHANEDVEKMILGKTKDTA 127
+ Y+ GI+ + D + + FD L L NI E +DV +ILG D
Sbjct: 58 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAEL--KDVPFVILGNKIDAP 115
Query: 128 GQERFHTITTSYYRGAMGIM 147
+ ++ + R A+G++
Sbjct: 116 -----NAVSEAELRSALGLL 130
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KLL +G GKT +L +D ++T+ + + +L IK +D G +
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDR-----LATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 79
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNI---LKWLRNIDEHANEDVEKMILGKTKDTA 127
+ Y+ GI+ + D + + FD L L NI E +DV +ILG D
Sbjct: 80 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAEL--KDVPFVILGNKIDAP 137
Query: 128 GQERFHTITTSYYRGAMGIM 147
+ ++ + R A+G++
Sbjct: 138 -----NAVSEAELRSALGLL 152
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L++++L+GD GVGKT + F+ +G D +T+ + G+ L + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 69 ERFHT--ITTSYYRGAMGIMLVYDITNEKSFDNILKW---LRNIDEHANEDVEKMILGKT 123
E+ S +G ++VY I + SF++ + LR H + V +++G
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT--HQADHVPIILVGNK 120
Query: 124 KDTA 127
D A
Sbjct: 121 ADLA 124
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 11 KLLLIGDSGVGKTCVLFRFS-DDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K++++G GKT +L++FS ++ +T+ TIG + + ++ + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHTS--PTIGSNVEEIVIN----NTRFLMWDIGGQE 77
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEK 95
+ +YY +++V D T+ +
Sbjct: 78 SLRSSWNTYYTNTEFVIVVVDSTDRE 103
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 11 KLLLIGDSGVGKTCVLFRFS-DDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K++++G GKT +L++FS ++ +T+ TIG + + ++ + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTS--PTIGSNVEEIVIN----NTRFLMWDIGGQE 76
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEK 95
+ +YY +++V D T+ +
Sbjct: 77 SLRSSWNTYYTNTEFVIVVVDSTDRE 102
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 11 KLLLIGDSGVGKTCVLFRFS-DDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K++++G GKT +L++FS ++ +T+ TIG + + ++ + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS--PTIGSNVE----EIVINNTRFLMWDIGGQE 71
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEK 95
+ +YY +++V D T+ +
Sbjct: 72 SLRSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 11 KLLLIGDSGVGKTCVLFRFS-DDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K++++G GKT +L++FS ++ +T+ TIG + + ++ + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS--PTIGSNVE----EIVINNTRFLMWDIGGQE 71
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEK 95
+ +YY +++V D T+ +
Sbjct: 72 SLRSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 11 KLLLIGDSGVGKTCVLFRF-SDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K++++G GKT +L++F ++ +T+ TIG + + ++ K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTS--PTIGSNVE----EIVVKNTHFLMWDIGGQE 71
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
+ +YY I+LV D
Sbjct: 72 SLRSSWNTYYSNTEFIILVVD 92
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
++LL+G GKT +L + + + + T G F IK+V +G KL +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSVQSQG--FKLNVWDIGGLRK 60
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFD 98
SY+ ++ V D + K F+
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL---QIW 63
D +FK++L+G+SGVGK+ + F ++ D + + + +++ L IW
Sbjct: 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 64 ---DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK-WLRNIDEHANEDVEKMI 119
D G R H + T ++V+ +T+ +SF + + LR + D+ ++
Sbjct: 81 EQGDAGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135
Query: 120 LGKTKDTA 127
+G D A
Sbjct: 136 VGNKSDLA 143
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
Length = 190
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 12 LLLIGDSGVGKTCVLFRF-SDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
+L +G GKT ++ + +A + + TIG F I+ K + ++D +GQ R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEK--FKSSSLSFTVFDMSGQGR 79
Query: 71 FHTITTSYYRGAMGIMLVYD 90
+ + YY+ I+ V D
Sbjct: 80 YRNLWEHYYKEGQAIIFVID 99
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K L++G+ G GK+ V + FN + G+D + + G + W+ +
Sbjct: 5 LKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVD-ALNKLQAGGYGFVISDWNMPNMD 63
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 101
+ T GAM + V +T E +NI+
Sbjct: 64 GLELLKTIRADGAMSALPVLMVTAEAKKENII 95
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTF------ISTIGIDFKIKTVDLKGK--KIK 59
F F +L +G++G+GK+ ++ D FNT F + G+ + T DL+ ++K
Sbjct: 41 FCFNILCVGETGLGKSTLM----DTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLK 96
Query: 60 LQIWDTAG 67
L I T G
Sbjct: 97 LTIVSTVG 104
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 8 FLFKLLLIGDSGVGKTCVLFR-FSDDAFNTTFIS--------TIGIDFKIKTVDLKGKKI 58
F F L+++G+SG+GK+ ++ F D + I T+ I+ ++ +G K+
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 59 KLQIWDTAG 67
+L + DT G
Sbjct: 96 RLTVVDTPG 104
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 8 FLFKLLLIGDSGVGKTCVLFR-FSDDAFNTTFIS--------TIGIDFKIKTVDLKGKKI 58
F F L ++G+SG+GK+ ++ F D + IS T+ I+ ++ +G K+
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 59 KLQIWDTAG 67
+L + DT G
Sbjct: 77 RLTVVDTPG 85
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 8 FLFKLLLIGDSGVGKTCVLFR-FSDDAFNTTFIS--------TIGIDFKIKTVDLKGKKI 58
F F L+++G+SG+GK+ ++ F D + I T+ I+ ++ +G K+
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKL 63
Query: 59 KLQIWDTAG 67
+L + DT G
Sbjct: 64 RLTVVDTPG 72
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 24/134 (17%)
Query: 7 DFLFKLLLIGDSGVGKTCVLFRF----SDDAFNT-----TFISTIGIDFKIKTVDLKGKK 57
D +FK++L+G+SGVGK+ + F D+A T+ I +D + T+
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTL------ 63
Query: 58 IKLQIW---DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK-WLRNIDEHANE 113
I IW D G + H + T ++V+ +T+ +SF + + LR +
Sbjct: 64 IVYDIWEQGDAGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 118
Query: 114 DVEKMILGKTKDTA 127
D+ +++G D A
Sbjct: 119 DLPVILVGNKSDLA 132
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 8 FLFKLLLIGDSGVGKTCVLFR-FSDDAFNTTFIS--------TIGIDFKIKTVDLKGKKI 58
F F L ++G+SG+GK+ ++ F D + I T+ I+ ++ +G K+
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 59 KLQIWDTAG 67
+L + DT G
Sbjct: 96 RLTVVDTPG 104
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 24/132 (18%)
Query: 9 LFKLLLIGDSGVGKTCVLFRF----SDDAFNT-----TFISTIGIDFKIKTVDLKGKKIK 59
+FK++L+G+SGVGK+ + F D A T+ I +D + T+ I
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTL------IV 55
Query: 60 LQIW---DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK-WLRNIDEHANEDV 115
IW D G + H + T ++V+ +T+ +SF + + LR + D+
Sbjct: 56 YDIWEQGDAGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL 110
Query: 116 EKMILGKTKDTA 127
+++G D A
Sbjct: 111 PVILVGNKSDLA 122
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 10 FKLLLIGDSGVGKTCV--LFRFSDDAFNTTFISTIGIDFKIKTVDLKGKK---IKLQIWD 64
++++LIG+ GVGK+ + +F D+ ++ +G D +T+ + G+ I L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 98
G+ + + + ++VY IT+ SF+
Sbjct: 66 NKGENEW--LHDHXMQVGDAYLIVYSITDRASFE 97
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 10 FKLLLIGDSGVGKTCV--LFRFSDDAFNTTFISTIGIDFKIKTVDLKGKK---IKLQIWD 64
++++LIG+ GVGK+ + +F D+ ++ +G D +T+ + G+ I L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW---LRNIDEHANEDVEKMILG 121
G+ + + + ++VY IT+ SF+ + LR + ED+ +++G
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVG 121
Query: 122 KTKD 125
D
Sbjct: 122 NKSD 125
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 145 GIMLVYDITN--EKSFDNILKWLRNIDEH--ANEDPQVVNSWVCKHRGEAIAREY----- 195
G +L D++ ++FD+ LK++ N+ + P VV C E R+
Sbjct: 165 GFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL 224
Query: 196 ---GVRFMETSAKANINIEKAFIELATAI 221
++ +ETSA++N+N++ AF L I
Sbjct: 225 SKKNLQVVETSARSNVNVDLAFSTLVQLI 253
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K L++ D G G+ V + FN + G+D + + G + W+ +
Sbjct: 6 LKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVD-ALNKLQAGGYGFVISDWNMPNMD 64
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 101
+ T GAM + V +T E +NI+
Sbjct: 65 GLELLKTIRADGAMSALPVLMVTAEAKKENII 96
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 10 FKLLLIGDSGVGKTCV--LFRFSDDAFNTTFISTIGIDFKIKTVDLKGKK---IKLQIWD 64
++++LIG+ GVGK+ + +F D+ ++ +G D +T+ + G+ I L +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWE 96
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 98
G+ + + + ++VY IT+ SF+
Sbjct: 97 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFE 128
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 10 FKLLLIGDSGVGKTCV--LFRFSDDAFNTTFISTIGIDFKIKTVDLKGKK---IKLQIWD 64
++++LIG+ GVGK+ + +F D+ ++ +G D +T+ + G+ I L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 98
G+ + + + ++VY IT+ SF+
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFE 97
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L+R + + ++T L+ K I ++WD GQ
Sbjct: 23 IRVLMLGLDNAGKTSILYRLH---LGDVVTTVPTVGVNLET--LQYKNISFEVWDLGGQT 77
Query: 70 RFHTITTSYYRGAMGIMLVYDITN 93
Y+ ++ V D T+
Sbjct: 78 GVRPYWRCYFSDTDAVIYVVDSTD 101
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 51 VDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD----ITNEKSF--DNILKWL 104
+DLKGKKI +Q + AG ++T + + M ++ V D I N D +LKW
Sbjct: 208 IDLKGKKIAVQGYGNAG---YYTAKLAKEQLGMTVVAVSDSRGGIYNPDGLDPDEVLKWK 264
Query: 105 RNIDEHAN 112
R EH +
Sbjct: 265 R---EHGS 269
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 143 AMG--IMLVYDITNEKSFDNI------LKWLRNIDEH-----ANEDPQVVNSWVCKHRGE 189
AMG ++VY +T++ SF+ L+ R D+ N+ V + V G
Sbjct: 76 AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR 135
Query: 190 AIAREYGVRFMETSAKANINIEKAF 214
A A + +F+ETSA + N++ F
Sbjct: 136 ACAVVFDCKFIETSAALHHNVQALF 160
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 27/130 (20%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSD-------DAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
++K+LL+G GVGK+ + F +A T+ +I +D G++ L
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD---------GEEASLM 57
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI------LKWLRNIDEHANEDV 115
++D Q+ + ++VY +T++ SF+ L+ R D DV
Sbjct: 58 VYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-----DV 112
Query: 116 EKMILGKTKD 125
+++G D
Sbjct: 113 PIILVGNKSD 122
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 143 AMG--IMLVYDITNEKSFDNI------LKWLRNIDEH-----ANEDPQVVNSWVCKHRGE 189
AMG ++VY +T++ SF+ L+ R D+ N+ V + V G
Sbjct: 76 AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR 135
Query: 190 AIAREYGVRFMETSAKANINIEKAF 214
A A + +F+ETSA + N++ F
Sbjct: 136 ACAVVFDCKFIETSAALHHNVQALF 160
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 27/130 (20%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSD-------DAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
++K+LL+G GVGK+ + F +A T+ +I +D G++ L
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD---------GEEASLM 57
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI------LKWLRNIDEHANEDV 115
++D Q+ + ++VY +T++ SF+ L+ R D DV
Sbjct: 58 VYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-----DV 112
Query: 116 EKMILGKTKD 125
+++G D
Sbjct: 113 PIILVGNKSD 122
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 143 AMG--IMLVYDITNEKSFDNI------LKWLRNIDEH-----ANEDPQVVNSWVCKHRGE 189
AMG ++VY +T++ SF+ L+ R D+ N+ V + V G
Sbjct: 71 AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR 130
Query: 190 AIAREYGVRFMETSAKANINIEKAF 214
A A + +F+ETSA + N++ F
Sbjct: 131 ACAVVFDCKFIETSAALHHNVQALF 155
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 27/130 (20%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSD-------DAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
++K+LL+G GVGK+ + F +A T+ +I +D G++ L
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD---------GEEASLM 52
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI------LKWLRNIDEHANEDV 115
++D Q+ + ++VY +T++ SF+ L+ R D DV
Sbjct: 53 VYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-----DV 107
Query: 116 EKMILGKTKD 125
+++G D
Sbjct: 108 PIILVGNKSD 117
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 11 KLLLIGDSGVGKTCVL-FRFSD-DAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
KLLL+G SG GK+ + FS+ AF+T + ID + + G + L +WD GQ
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGA-TIDVEHSHLRFLG-NMTLNLWDCGGQ 65
Query: 69 ERF 71
+ F
Sbjct: 66 DVF 68
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIK-TVDLKGKKIKLQIWDTAGQER 70
L ++G G GK+ + +F F + + + + + TVD + + L++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVD--HQPVHLRVMDTADLDT 81
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE---DVEKMILGKTKDTA 127
Y A ++VY + + +SFD+ +L + HA E + ++LG D A
Sbjct: 82 PRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,697,812
Number of Sequences: 62578
Number of extensions: 309350
Number of successful extensions: 1951
Number of sequences better than 100.0: 360
Number of HSP's better than 100.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 685
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)