Query psy9621
Match_columns 253
No_of_seqs 126 out of 1410
Neff 10.0
Searched_HMMs 46136
Date Sat Aug 17 00:26:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 6.3E-45 1.4E-49 269.9 20.2 200 2-253 2-204 (205)
2 KOG0078|consensus 100.0 3.9E-42 8.3E-47 258.8 19.7 177 1-228 4-180 (207)
3 KOG0092|consensus 100.0 9E-42 2E-46 252.2 19.4 195 7-253 3-199 (200)
4 KOG0098|consensus 100.0 1.5E-40 3.3E-45 243.7 16.7 171 6-227 3-173 (216)
5 KOG0094|consensus 100.0 1E-39 2.2E-44 241.3 19.3 186 9-245 22-210 (221)
6 KOG0394|consensus 100.0 5.5E-40 1.2E-44 240.4 15.6 178 1-227 1-183 (210)
7 KOG0080|consensus 100.0 2.6E-39 5.6E-44 231.5 17.7 198 5-253 7-207 (209)
8 KOG0079|consensus 100.0 2.1E-40 4.6E-45 233.9 11.3 196 4-253 3-198 (198)
9 KOG0087|consensus 100.0 4.4E-39 9.5E-44 241.2 17.9 172 4-226 9-180 (222)
10 cd04121 Rab40 Rab40 subfamily. 100.0 4.9E-37 1.1E-41 237.5 21.7 179 6-237 3-181 (189)
11 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.9E-37 1.1E-41 240.9 20.9 193 10-253 1-201 (201)
12 cd04126 Rab20 Rab20 subfamily. 100.0 2E-36 4.3E-41 238.8 20.0 206 10-253 1-220 (220)
13 KOG0086|consensus 100.0 3.8E-37 8.3E-42 218.6 14.0 178 1-229 1-178 (214)
14 cd04120 Rab12 Rab12 subfamily. 100.0 5E-36 1.1E-40 234.0 21.6 165 10-225 1-166 (202)
15 cd04110 Rab35 Rab35 subfamily. 100.0 9.7E-36 2.1E-40 233.1 22.0 196 6-253 3-199 (199)
16 PLN03110 Rab GTPase; Provision 100.0 1.4E-35 2.9E-40 234.9 22.7 172 2-224 5-176 (216)
17 cd04112 Rab26 Rab26 subfamily. 100.0 1.8E-35 3.9E-40 230.2 21.5 190 10-253 1-191 (191)
18 KOG0093|consensus 100.0 6.7E-36 1.5E-40 210.9 14.7 174 5-229 17-190 (193)
19 cd04144 Ras2 Ras2 subfamily. 100.0 3E-35 6.4E-40 228.8 19.5 169 11-231 1-172 (190)
20 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4E-35 8.6E-40 225.8 19.2 176 6-222 2-180 (182)
21 KOG0088|consensus 100.0 4.2E-36 9E-41 214.6 12.3 197 6-253 10-216 (218)
22 cd04109 Rab28 Rab28 subfamily. 100.0 1.2E-34 2.5E-39 229.6 22.0 165 10-225 1-169 (215)
23 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.4E-34 2.9E-39 229.6 21.8 179 5-224 9-190 (232)
24 cd04133 Rop_like Rop subfamily 100.0 6.6E-35 1.4E-39 223.3 19.4 169 10-221 2-172 (176)
25 KOG0091|consensus 100.0 1E-35 2.2E-40 213.7 13.3 197 6-253 5-213 (213)
26 cd04122 Rab14 Rab14 subfamily. 100.0 1.2E-34 2.5E-39 220.8 20.0 164 9-223 2-165 (166)
27 KOG0095|consensus 100.0 1.9E-35 4E-40 209.3 13.9 172 5-227 3-174 (213)
28 cd01867 Rab8_Rab10_Rab13_like 100.0 1.9E-34 4.2E-39 219.7 19.9 166 7-223 1-166 (167)
29 cd04131 Rnd Rnd subfamily. Th 100.0 1.6E-34 3.6E-39 221.9 19.1 173 9-222 1-176 (178)
30 cd04125 RabA_like RabA-like su 100.0 4.9E-34 1.1E-38 221.6 21.1 165 10-225 1-165 (188)
31 cd04111 Rab39 Rab39 subfamily. 100.0 6.8E-34 1.5E-38 224.3 22.0 170 8-228 1-172 (211)
32 cd04118 Rab24 Rab24 subfamily. 100.0 7.9E-34 1.7E-38 221.4 22.0 192 10-253 1-193 (193)
33 cd04117 Rab15 Rab15 subfamily. 100.0 4.5E-34 9.8E-39 216.4 18.8 160 10-220 1-160 (161)
34 cd01865 Rab3 Rab3 subfamily. 100.0 7.2E-34 1.6E-38 216.2 20.0 163 10-223 2-164 (165)
35 cd01875 RhoG RhoG subfamily. 100.0 7.5E-34 1.6E-38 220.9 20.1 174 9-223 3-178 (191)
36 PTZ00369 Ras-like protein; Pro 100.0 8.3E-34 1.8E-38 220.5 19.9 166 8-225 4-170 (189)
37 cd04127 Rab27A Rab27a subfamil 100.0 8.8E-34 1.9E-38 218.7 19.6 167 7-224 2-179 (180)
38 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1E-33 2.2E-38 216.6 19.6 165 9-225 2-167 (172)
39 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.1E-33 2.3E-38 218.2 19.7 169 10-225 1-169 (182)
40 PLN03108 Rab family protein; P 100.0 2.5E-33 5.3E-38 221.1 21.8 170 6-226 3-172 (210)
41 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.8E-33 3.8E-38 214.2 20.0 163 9-222 2-164 (166)
42 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.2E-33 4.7E-38 221.7 20.9 177 9-226 1-180 (222)
43 KOG0083|consensus 100.0 1.9E-35 4.2E-40 205.4 7.6 189 13-253 1-190 (192)
44 cd04132 Rho4_like Rho4-like su 100.0 1.7E-33 3.7E-38 218.4 19.2 170 10-228 1-173 (187)
45 cd01866 Rab2 Rab2 subfamily. 100.0 3.1E-33 6.8E-38 213.3 20.3 167 6-223 1-167 (168)
46 PLN03071 GTP-binding nuclear p 100.0 3E-33 6.6E-38 221.7 20.3 167 5-225 9-175 (219)
47 PF00071 Ras: Ras family; Int 100.0 2.7E-33 5.8E-38 212.3 18.7 161 11-222 1-161 (162)
48 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.5E-33 7.7E-38 214.2 19.1 172 9-221 1-174 (175)
49 cd04119 RJL RJL (RabJ-Like) su 100.0 4.5E-33 9.8E-38 211.9 19.3 162 10-222 1-167 (168)
50 cd01868 Rab11_like Rab11-like. 100.0 6.4E-33 1.4E-37 210.8 19.7 164 7-221 1-164 (165)
51 KOG0081|consensus 100.0 5.7E-35 1.2E-39 208.9 7.2 175 1-226 1-185 (219)
52 KOG0097|consensus 100.0 3.3E-33 7.1E-38 196.3 15.6 195 5-252 7-213 (215)
53 cd04134 Rho3 Rho3 subfamily. 100.0 1.2E-32 2.6E-37 213.9 20.4 173 10-223 1-175 (189)
54 cd01864 Rab19 Rab19 subfamily. 100.0 8.6E-33 1.9E-37 210.2 18.9 163 7-220 1-164 (165)
55 cd00877 Ran Ran (Ras-related n 100.0 2.7E-32 5.8E-37 207.7 20.2 160 10-223 1-160 (166)
56 cd04136 Rap_like Rap-like subf 100.0 1.6E-32 3.5E-37 208.1 18.7 160 10-221 2-162 (163)
57 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.4E-32 5.1E-37 208.7 19.7 164 11-223 2-166 (170)
58 cd04113 Rab4 Rab4 subfamily. 100.0 1.7E-32 3.6E-37 207.7 18.4 160 10-220 1-160 (161)
59 cd04175 Rap1 Rap1 subgroup. T 100.0 2.5E-32 5.4E-37 207.4 19.2 162 9-222 1-163 (164)
60 cd04106 Rab23_lke Rab23-like s 100.0 2.3E-32 4.9E-37 207.1 18.5 159 10-220 1-161 (162)
61 cd04124 RabL2 RabL2 subfamily. 100.0 5.8E-32 1.3E-36 204.8 19.8 160 10-224 1-160 (161)
62 PLN03118 Rab family protein; P 100.0 1.2E-31 2.5E-36 211.9 22.1 171 4-226 9-181 (211)
63 cd01871 Rac1_like Rac1-like su 100.0 4.1E-32 8.8E-37 208.1 18.7 170 10-220 2-173 (174)
64 cd04176 Rap2 Rap2 subgroup. T 100.0 5.3E-32 1.2E-36 205.4 19.0 161 9-221 1-162 (163)
65 cd04116 Rab9 Rab9 subfamily. 100.0 6.4E-32 1.4E-36 206.4 19.0 163 6-220 2-169 (170)
66 smart00176 RAN Ran (Ras-relate 100.0 9.5E-32 2E-36 209.6 19.4 156 15-224 1-156 (200)
67 smart00175 RAB Rab subfamily o 100.0 1.1E-31 2.4E-36 203.6 19.3 163 10-223 1-163 (164)
68 cd04140 ARHI_like ARHI subfami 100.0 1.2E-31 2.6E-36 204.0 19.3 159 10-220 2-163 (165)
69 cd04142 RRP22 RRP22 subfamily. 100.0 2.1E-31 4.6E-36 207.9 19.8 167 10-227 1-179 (198)
70 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.3E-31 4.9E-36 201.3 19.3 160 9-221 1-161 (162)
71 smart00173 RAS Ras subfamily o 100.0 2.1E-31 4.7E-36 202.2 19.1 161 10-222 1-162 (164)
72 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3E-31 6.5E-36 201.3 19.6 161 9-221 2-163 (164)
73 cd01873 RhoBTB RhoBTB subfamil 100.0 1.4E-31 3.1E-36 208.1 18.0 177 9-220 2-194 (195)
74 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.4E-31 7.4E-36 202.4 19.3 162 9-221 2-168 (170)
75 cd01860 Rab5_related Rab5-rela 100.0 3.9E-31 8.4E-36 200.6 19.4 162 9-221 1-162 (163)
76 cd01861 Rab6 Rab6 subfamily. 100.0 3.8E-31 8.1E-36 200.2 18.6 160 10-220 1-160 (161)
77 cd04103 Centaurin_gamma Centau 100.0 5.4E-31 1.2E-35 198.7 18.4 155 10-220 1-157 (158)
78 cd04101 RabL4 RabL4 (Rab-like4 100.0 6.6E-31 1.4E-35 199.5 18.3 160 10-221 1-163 (164)
79 cd04143 Rhes_like Rhes_like su 100.0 1.5E-30 3.2E-35 209.2 20.2 163 10-224 1-173 (247)
80 cd01862 Rab7 Rab7 subfamily. 100.0 1.9E-30 4.1E-35 198.4 19.8 165 10-225 1-170 (172)
81 cd01892 Miro2 Miro2 subfamily. 100.0 1.5E-30 3.2E-35 198.6 19.1 164 7-223 2-167 (169)
82 smart00174 RHO Rho (Ras homolo 100.0 1.3E-30 2.9E-35 199.8 18.7 171 12-223 1-173 (174)
83 cd04177 RSR1 RSR1 subgroup. R 100.0 3E-30 6.4E-35 196.8 19.6 163 9-223 1-165 (168)
84 cd01863 Rab18 Rab18 subfamily. 100.0 2.8E-30 6.1E-35 195.5 19.1 159 10-220 1-160 (161)
85 cd04123 Rab21 Rab21 subfamily. 100.0 3.2E-30 6.9E-35 195.0 19.2 161 10-221 1-161 (162)
86 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.1E-30 6.7E-35 197.6 19.0 169 10-219 1-171 (173)
87 cd04146 RERG_RasL11_like RERG/ 100.0 3.3E-30 7.2E-35 196.0 17.4 160 11-222 1-164 (165)
88 cd04114 Rab30 Rab30 subfamily. 100.0 9.9E-30 2.1E-34 194.0 20.1 165 6-221 4-168 (169)
89 cd04148 RGK RGK subfamily. Th 100.0 7.3E-30 1.6E-34 202.6 19.8 164 10-226 1-167 (221)
90 cd04129 Rho2 Rho2 subfamily. 100.0 1.2E-29 2.7E-34 196.7 20.4 172 10-224 2-175 (187)
91 cd04135 Tc10 TC10 subfamily. 100.0 1.1E-29 2.4E-34 194.7 18.9 171 10-221 1-173 (174)
92 cd00154 Rab Rab family. Rab G 100.0 2E-29 4.4E-34 189.6 17.8 158 10-218 1-158 (159)
93 KOG0395|consensus 100.0 2.2E-29 4.7E-34 194.9 17.2 167 8-226 2-169 (196)
94 PTZ00132 GTP-binding nuclear p 100.0 8.4E-29 1.8E-33 196.2 21.0 171 1-225 1-171 (215)
95 cd01870 RhoA_like RhoA-like su 100.0 7E-29 1.5E-33 190.4 18.8 171 10-221 2-174 (175)
96 cd04139 RalA_RalB RalA/RalB su 100.0 1.1E-28 2.4E-33 187.0 19.1 162 10-223 1-163 (164)
97 KOG0393|consensus 100.0 1.5E-29 3.2E-34 191.7 13.6 179 7-226 2-183 (198)
98 PLN00223 ADP-ribosylation fact 100.0 8.9E-29 1.9E-33 190.7 16.9 157 7-224 15-180 (181)
99 cd00876 Ras Ras family. The R 100.0 1.4E-28 3.1E-33 185.6 17.3 158 11-220 1-159 (160)
100 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 3E-29 6.5E-34 190.5 13.0 156 12-219 2-163 (164)
101 cd04137 RheB Rheb (Ras Homolog 100.0 4.9E-28 1.1E-32 186.6 20.0 165 10-226 2-167 (180)
102 cd04149 Arf6 Arf6 subfamily. 100.0 6.6E-29 1.4E-33 189.3 14.9 155 7-219 7-167 (168)
103 cd04147 Ras_dva Ras-dva subfam 100.0 2.1E-28 4.5E-33 191.5 17.5 168 11-229 1-170 (198)
104 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.9E-28 4.2E-33 189.3 16.8 166 9-228 3-176 (183)
105 PTZ00133 ADP-ribosylation fact 100.0 3.1E-28 6.7E-33 187.9 17.4 167 7-226 15-182 (182)
106 smart00177 ARF ARF-like small 100.0 3E-28 6.5E-33 186.9 17.3 162 7-221 11-173 (175)
107 cd04158 ARD1 ARD1 subfamily. 100.0 2.8E-28 6E-33 186.1 16.4 157 11-225 1-164 (169)
108 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.5E-28 7.5E-33 183.7 16.2 113 10-127 1-114 (159)
109 PTZ00099 rab6; Provisional 100.0 1.1E-27 2.3E-32 183.5 18.0 170 32-252 3-174 (176)
110 cd00157 Rho Rho (Ras homology) 100.0 1.9E-27 4.2E-32 181.6 18.9 168 10-219 1-170 (171)
111 cd04102 RabL3 RabL3 (Rab-like3 100.0 9.4E-28 2E-32 187.0 16.5 118 10-127 1-142 (202)
112 cd04154 Arl2 Arl2 subfamily. 100.0 6.3E-28 1.4E-32 184.8 15.3 157 5-219 10-172 (173)
113 cd01893 Miro1 Miro1 subfamily. 100.0 2.6E-27 5.6E-32 180.2 17.7 162 10-223 1-165 (166)
114 PLN00023 GTP-binding protein; 100.0 7.4E-27 1.6E-31 190.5 18.3 123 5-127 17-164 (334)
115 cd04157 Arl6 Arl6 subfamily. 100.0 3.5E-27 7.7E-32 178.5 15.5 113 11-127 1-117 (162)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 3.7E-27 8.1E-32 180.7 13.6 159 8-219 14-173 (174)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.9 4.7E-27 1E-31 177.6 13.1 157 11-219 1-159 (160)
118 cd04161 Arl2l1_Arl13_like Arl2 99.9 6.5E-27 1.4E-31 178.2 13.4 157 11-219 1-166 (167)
119 KOG4252|consensus 99.9 2E-28 4.3E-33 178.8 3.7 172 1-224 12-183 (246)
120 cd04151 Arl1 Arl1 subfamily. 99.9 3.9E-26 8.4E-31 172.3 14.9 156 11-219 1-157 (158)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.9 5.8E-26 1.3E-30 172.8 14.8 113 11-127 1-120 (167)
122 PF00025 Arf: ADP-ribosylation 99.9 6.1E-26 1.3E-30 173.9 14.8 165 5-221 10-175 (175)
123 cd00879 Sar1 Sar1 subfamily. 99.9 6.6E-26 1.4E-30 176.2 15.0 116 7-127 17-133 (190)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.9 6.9E-26 1.5E-30 170.9 14.6 156 11-219 1-157 (158)
125 KOG0073|consensus 99.9 3.7E-25 8.1E-30 159.5 15.1 169 4-224 11-180 (185)
126 smart00178 SAR Sar1p-like memb 99.9 1.1E-24 2.4E-29 168.5 16.1 116 7-127 15-131 (184)
127 cd01890 LepA LepA subfamily. 99.9 7.4E-25 1.6E-29 168.6 15.1 154 11-221 2-176 (179)
128 cd04159 Arl10_like Arl10-like 99.9 2E-24 4.2E-29 162.4 16.1 156 12-219 2-158 (159)
129 cd04155 Arl3 Arl3 subfamily. 99.9 5.2E-24 1.1E-28 163.0 16.5 118 5-127 10-128 (173)
130 TIGR00231 small_GTP small GTP- 99.9 1.1E-23 2.4E-28 157.9 17.0 158 9-218 1-160 (161)
131 cd01897 NOG NOG1 is a nucleola 99.9 7.1E-24 1.5E-28 161.4 15.9 156 10-221 1-167 (168)
132 cd01898 Obg Obg subfamily. Th 99.9 1E-23 2.2E-28 160.9 15.1 157 11-220 2-169 (170)
133 KOG0070|consensus 99.9 3.8E-24 8.2E-29 158.3 11.9 166 6-224 14-180 (181)
134 COG1100 GTPase SAR1 and relate 99.9 2.3E-23 4.9E-28 165.5 17.1 178 9-225 5-188 (219)
135 cd01878 HflX HflX subfamily. 99.9 1.9E-23 4.1E-28 164.2 14.8 158 6-220 38-203 (204)
136 TIGR02528 EutP ethanolamine ut 99.9 5.8E-24 1.3E-28 157.5 10.4 134 11-218 2-141 (142)
137 KOG1673|consensus 99.9 1.9E-23 4.2E-28 149.2 12.2 171 7-224 18-188 (205)
138 cd04171 SelB SelB subfamily. 99.9 3.4E-23 7.4E-28 156.8 14.4 154 10-219 1-163 (164)
139 PRK12299 obgE GTPase CgtA; Rev 99.9 1.5E-22 3.2E-27 169.0 17.3 162 10-223 159-329 (335)
140 PRK04213 GTP-binding protein; 99.9 2E-23 4.3E-28 163.7 10.5 159 1-223 1-193 (201)
141 cd01891 TypA_BipA TypA (tyrosi 99.9 5.4E-23 1.2E-27 160.4 12.5 115 9-127 2-130 (194)
142 KOG0075|consensus 99.9 5.7E-23 1.2E-27 145.5 10.1 155 9-223 20-183 (186)
143 cd01879 FeoB Ferrous iron tran 99.9 5E-22 1.1E-26 149.6 15.9 148 14-221 1-156 (158)
144 KOG0071|consensus 99.9 8.9E-23 1.9E-27 143.4 10.6 162 8-222 16-178 (180)
145 PF08477 Miro: Miro-like prote 99.9 2.4E-22 5.3E-27 144.3 12.6 114 11-125 1-119 (119)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.2E-22 6.9E-27 152.2 13.7 162 11-222 2-166 (168)
147 KOG0096|consensus 99.9 1.1E-22 2.4E-27 150.2 10.5 170 1-224 1-171 (216)
148 cd00882 Ras_like_GTPase Ras-li 99.9 1.2E-21 2.5E-26 145.6 15.6 153 14-218 1-156 (157)
149 PRK03003 GTP-binding protein D 99.9 7.1E-22 1.5E-26 173.2 15.8 178 9-247 38-224 (472)
150 KOG3883|consensus 99.9 4.1E-21 8.9E-26 137.0 16.5 174 7-231 7-184 (198)
151 PF02421 FeoB_N: Ferrous iron 99.9 1.4E-21 3.1E-26 144.7 14.2 148 10-217 1-156 (156)
152 TIGR03156 GTP_HflX GTP-binding 99.9 1.5E-21 3.2E-26 164.2 16.0 156 7-220 187-350 (351)
153 TIGR02729 Obg_CgtA Obg family 99.9 2.6E-21 5.6E-26 161.4 17.2 159 10-221 158-328 (329)
154 TIGR01393 lepA GTP-binding pro 99.9 1.9E-21 4.1E-26 173.7 17.3 159 8-223 2-181 (595)
155 TIGR00436 era GTP-binding prot 99.9 4.1E-21 8.9E-26 157.0 15.5 155 11-225 2-167 (270)
156 cd00881 GTP_translation_factor 99.9 4E-21 8.6E-26 148.8 14.5 172 11-221 1-186 (189)
157 cd04164 trmE TrmE (MnmE, ThdF, 99.9 6.4E-21 1.4E-25 143.1 14.5 146 10-221 2-156 (157)
158 PRK12297 obgE GTPase CgtA; Rev 99.9 1.3E-20 2.7E-25 161.2 17.9 159 11-225 160-330 (424)
159 PRK15467 ethanolamine utilizat 99.9 1.9E-21 4E-26 146.5 11.3 143 11-226 3-151 (158)
160 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.3E-20 2.8E-25 162.9 17.5 154 7-225 201-363 (442)
161 PRK15494 era GTPase Era; Provi 99.9 7.1E-21 1.5E-25 159.9 15.5 158 7-226 50-220 (339)
162 KOG4423|consensus 99.9 1.2E-23 2.5E-28 154.8 -1.1 171 5-225 21-197 (229)
163 PRK00454 engB GTP-binding prot 99.9 1E-20 2.3E-25 147.6 15.3 167 1-223 16-195 (196)
164 cd01881 Obg_like The Obg-like 99.9 3.2E-21 7E-26 147.7 11.9 153 14-220 1-175 (176)
165 PRK11058 GTPase HflX; Provisio 99.9 1.5E-20 3.2E-25 161.7 17.0 157 10-223 198-363 (426)
166 cd01889 SelB_euk SelB subfamil 99.9 5.8E-21 1.3E-25 148.6 13.2 160 10-222 1-186 (192)
167 TIGR00487 IF-2 translation ini 99.9 1.7E-20 3.7E-25 166.8 17.5 161 8-220 86-248 (587)
168 PRK03003 GTP-binding protein D 99.9 1.1E-20 2.5E-25 165.6 16.2 165 7-225 209-385 (472)
169 cd04168 TetM_like Tet(M)-like 99.9 5.2E-21 1.1E-25 153.0 12.2 201 11-222 1-235 (237)
170 cd01894 EngA1 EngA1 subfamily. 99.9 1.2E-20 2.6E-25 141.7 12.7 146 13-220 1-156 (157)
171 PRK05291 trmE tRNA modificatio 99.8 2.8E-20 6.1E-25 161.7 15.7 149 8-223 214-371 (449)
172 cd04169 RF3 RF3 subfamily. Pe 99.8 4.7E-20 1E-24 149.8 15.2 210 9-222 2-265 (267)
173 TIGR03598 GTPase_YsxC ribosome 99.8 2E-20 4.4E-25 144.0 12.1 118 3-127 12-142 (179)
174 cd04105 SR_beta Signal recogni 99.8 4E-20 8.6E-25 144.9 13.7 120 11-131 2-126 (203)
175 TIGR00475 selB selenocysteine- 99.8 7.8E-20 1.7E-24 163.2 16.4 172 10-241 1-183 (581)
176 CHL00189 infB translation init 99.8 5.6E-20 1.2E-24 165.9 15.4 163 8-221 243-409 (742)
177 cd01888 eIF2_gamma eIF2-gamma 99.8 3.3E-20 7.2E-25 145.5 12.0 162 10-222 1-199 (203)
178 PRK05433 GTP-binding protein L 99.8 1.2E-19 2.6E-24 162.4 16.8 162 6-224 4-186 (600)
179 KOG0076|consensus 99.8 1.5E-20 3.3E-25 137.1 8.9 162 9-224 17-189 (197)
180 PRK05306 infB translation init 99.8 1.1E-19 2.3E-24 165.5 16.4 160 8-220 289-450 (787)
181 TIGR03594 GTPase_EngA ribosome 99.8 8.5E-20 1.8E-24 159.0 15.0 175 11-247 1-185 (429)
182 PRK00093 GTP-binding protein D 99.8 1.8E-19 4E-24 157.1 17.0 173 10-247 2-186 (435)
183 cd04163 Era Era subfamily. Er 99.8 1.6E-19 3.4E-24 136.7 14.6 156 9-220 3-167 (168)
184 cd01895 EngA2 EngA2 subfamily. 99.8 2.1E-19 4.6E-24 137.0 15.2 156 9-220 2-173 (174)
185 TIGR03594 GTPase_EngA ribosome 99.8 1.5E-19 3.2E-24 157.5 16.3 165 7-224 170-346 (429)
186 PRK12296 obgE GTPase CgtA; Rev 99.8 3.3E-19 7.1E-24 154.5 17.2 162 10-225 160-343 (500)
187 PF00009 GTP_EFTU: Elongation 99.8 6.6E-20 1.4E-24 142.2 10.8 162 8-222 2-187 (188)
188 PRK00089 era GTPase Era; Revie 99.8 3.8E-19 8.2E-24 147.3 15.2 160 9-224 5-173 (292)
189 PRK09518 bifunctional cytidyla 99.8 5E-19 1.1E-23 162.1 17.1 180 7-247 273-463 (712)
190 TIGR00437 feoB ferrous iron tr 99.8 4.2E-19 9.2E-24 158.7 15.5 146 16-221 1-154 (591)
191 PRK12298 obgE GTPase CgtA; Rev 99.8 1.4E-18 3E-23 147.9 17.6 162 11-225 161-336 (390)
192 KOG0072|consensus 99.8 6.6E-20 1.4E-24 129.6 7.7 166 6-224 15-181 (182)
193 TIGR00483 EF-1_alpha translati 99.8 3.5E-19 7.6E-24 154.6 13.5 120 6-127 4-154 (426)
194 cd04170 EF-G_bact Elongation f 99.8 2.8E-19 6E-24 146.2 11.7 116 11-130 1-132 (268)
195 COG2229 Predicted GTPase [Gene 99.8 1.4E-18 3E-23 128.6 13.6 155 7-220 8-176 (187)
196 PRK12317 elongation factor 1-a 99.8 9.3E-19 2E-23 152.0 14.3 120 7-127 4-152 (425)
197 PRK09554 feoB ferrous iron tra 99.8 2.6E-18 5.7E-23 157.1 17.6 153 9-221 3-167 (772)
198 KOG0074|consensus 99.8 1.1E-18 2.3E-23 123.1 11.3 121 4-128 12-133 (185)
199 PRK00093 GTP-binding protein D 99.8 2.2E-18 4.7E-23 150.4 15.5 164 7-224 171-346 (435)
200 TIGR00491 aIF-2 translation in 99.8 2.4E-18 5.3E-23 152.9 15.5 111 10-127 5-134 (590)
201 cd01886 EF-G Elongation factor 99.8 9.7E-19 2.1E-23 142.3 11.6 208 11-222 1-268 (270)
202 cd00880 Era_like Era (E. coli 99.8 2.6E-18 5.6E-23 128.8 13.1 151 14-220 1-162 (163)
203 cd01896 DRG The developmentall 99.8 7.8E-18 1.7E-22 134.5 16.3 92 11-104 2-101 (233)
204 PRK10218 GTP-binding protein; 99.8 4.2E-18 9E-23 151.9 16.2 116 8-127 4-133 (607)
205 TIGR01394 TypA_BipA GTP-bindin 99.8 2.1E-18 4.6E-23 153.9 13.7 168 10-224 2-193 (594)
206 COG1160 Predicted GTPases [Gen 99.8 2.9E-18 6.3E-23 144.0 13.2 175 10-248 4-192 (444)
207 PRK09518 bifunctional cytidyla 99.8 4.9E-18 1.1E-22 155.6 15.9 160 7-225 448-624 (712)
208 PRK13351 elongation factor G; 99.8 3.1E-18 6.7E-23 156.8 13.1 124 3-130 2-141 (687)
209 COG1159 Era GTPase [General fu 99.8 1E-17 2.2E-22 133.6 13.8 162 9-226 6-176 (298)
210 PRK00741 prfC peptide chain re 99.8 2.4E-18 5.2E-23 151.6 10.7 122 6-131 7-148 (526)
211 cd01876 YihA_EngB The YihA (En 99.8 1.4E-17 3.1E-22 126.2 13.5 152 11-220 1-169 (170)
212 cd04166 CysN_ATPS CysN_ATPS su 99.8 6E-18 1.3E-22 133.2 10.5 114 11-127 1-143 (208)
213 TIGR00484 EF-G translation elo 99.8 1.3E-17 2.8E-22 152.5 13.7 126 1-130 2-143 (689)
214 PRK04000 translation initiatio 99.8 2.6E-17 5.7E-22 141.7 14.6 185 1-241 2-217 (411)
215 TIGR00503 prfC peptide chain r 99.7 7.2E-18 1.6E-22 148.7 11.2 122 5-130 7-148 (527)
216 TIGR03680 eif2g_arch translati 99.7 1.9E-17 4.1E-22 142.7 13.5 165 7-222 2-196 (406)
217 cd04167 Snu114p Snu114p subfam 99.7 1.9E-17 4.1E-22 130.9 11.8 113 11-127 2-136 (213)
218 PRK10512 selenocysteinyl-tRNA- 99.7 7.1E-17 1.5E-21 144.8 15.9 170 11-241 2-181 (614)
219 PRK04004 translation initiatio 99.7 6.9E-17 1.5E-21 144.2 15.4 112 9-127 6-136 (586)
220 cd01884 EF_Tu EF-Tu subfamily. 99.7 9.8E-17 2.1E-21 124.6 13.9 115 9-127 2-131 (195)
221 COG0486 ThdF Predicted GTPase 99.7 8.4E-17 1.8E-21 135.6 13.4 156 7-224 215-378 (454)
222 PF10662 PduV-EutP: Ethanolami 99.7 8.9E-17 1.9E-21 116.5 10.6 135 11-218 3-142 (143)
223 cd01883 EF1_alpha Eukaryotic e 99.7 3.6E-17 7.8E-22 129.8 8.5 114 11-127 1-150 (219)
224 COG0532 InfB Translation initi 99.7 2.3E-16 5.1E-21 134.7 13.6 185 10-245 6-193 (509)
225 PRK12736 elongation factor Tu; 99.7 7.6E-16 1.6E-20 132.3 16.1 118 6-127 9-141 (394)
226 KOG1707|consensus 99.7 6.2E-17 1.3E-21 138.6 9.2 125 1-127 1-128 (625)
227 TIGR00485 EF-Tu translation el 99.7 6.7E-16 1.4E-20 132.7 15.4 119 5-127 8-141 (394)
228 PRK12735 elongation factor Tu; 99.7 7.3E-16 1.6E-20 132.4 15.5 118 6-127 9-141 (396)
229 PRK00007 elongation factor G; 99.7 2.4E-16 5.2E-21 144.1 12.8 126 1-130 2-143 (693)
230 cd04165 GTPBP1_like GTPBP1-lik 99.7 4.2E-16 9.2E-21 123.6 12.5 113 11-127 1-151 (224)
231 cd01885 EF2 EF2 (for archaea a 99.7 2.5E-16 5.4E-21 124.4 11.1 113 11-127 2-138 (222)
232 COG0370 FeoB Fe2+ transport sy 99.7 7.5E-16 1.6E-20 135.2 14.7 158 9-226 3-168 (653)
233 KOG1423|consensus 99.7 6E-16 1.3E-20 123.3 12.5 188 6-223 69-272 (379)
234 PRK12739 elongation factor G; 99.7 3.3E-16 7.2E-21 143.2 12.3 123 4-130 3-141 (691)
235 PRK05124 cysN sulfate adenylyl 99.7 8.7E-16 1.9E-20 134.4 14.2 119 6-127 24-173 (474)
236 PLN00043 elongation factor 1-a 99.7 5.4E-16 1.2E-20 134.6 10.6 118 6-127 4-158 (447)
237 KOG1489|consensus 99.7 3.1E-15 6.8E-20 119.8 13.6 148 11-219 198-364 (366)
238 COG1160 Predicted GTPases [Gen 99.7 2.9E-15 6.3E-20 126.1 14.2 165 8-224 177-353 (444)
239 COG2262 HflX GTPases [General 99.7 5E-15 1.1E-19 122.9 15.3 161 7-224 190-358 (411)
240 CHL00071 tufA elongation facto 99.7 5.5E-15 1.2E-19 127.5 16.0 117 7-127 10-141 (409)
241 COG0218 Predicted GTPase [Gene 99.7 5.2E-15 1.1E-19 112.2 13.8 163 2-223 17-198 (200)
242 TIGR02034 CysN sulfate adenyly 99.6 2E-15 4.3E-20 130.1 12.9 115 10-127 1-146 (406)
243 cd04104 p47_IIGP_like p47 (47- 99.6 8E-15 1.7E-19 114.4 15.1 111 9-127 1-120 (197)
244 COG3596 Predicted GTPase [Gene 99.6 5.1E-16 1.1E-20 122.4 8.1 182 3-223 33-223 (296)
245 KOG0462|consensus 99.6 3.5E-15 7.6E-20 127.1 13.7 169 3-225 54-238 (650)
246 PRK00049 elongation factor Tu; 99.6 8E-15 1.7E-19 126.0 15.8 123 1-127 1-141 (396)
247 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 4.8E-15 1E-19 117.1 12.6 168 11-226 1-180 (232)
248 PF09439 SRPRB: Signal recogni 99.6 4.8E-16 1E-20 117.7 5.9 118 10-131 4-129 (181)
249 PLN03126 Elongation factor Tu; 99.6 1.8E-14 3.9E-19 125.7 16.3 118 6-127 78-210 (478)
250 PRK05506 bifunctional sulfate 99.6 6.6E-15 1.4E-19 133.7 13.5 122 3-127 18-170 (632)
251 COG0481 LepA Membrane GTPase L 99.6 1.4E-14 3E-19 121.7 13.5 168 1-225 1-189 (603)
252 cd01899 Ygr210 Ygr210 subfamil 99.6 3.1E-14 6.8E-19 118.1 15.0 81 12-92 1-110 (318)
253 PRK12740 elongation factor G; 99.6 6.2E-15 1.4E-19 134.9 11.5 112 15-130 1-128 (668)
254 cd01850 CDC_Septin CDC/Septin. 99.6 1.3E-14 2.7E-19 118.7 11.9 116 7-127 2-156 (276)
255 KOG3905|consensus 99.6 3.3E-14 7.2E-19 114.2 13.9 171 11-224 54-292 (473)
256 KOG0077|consensus 99.6 1.9E-15 4.2E-20 109.7 6.2 124 8-136 19-143 (193)
257 PTZ00141 elongation factor 1- 99.6 1.1E-14 2.3E-19 126.7 11.8 118 7-127 5-158 (446)
258 PLN03127 Elongation factor Tu; 99.6 6.3E-14 1.4E-18 121.7 15.9 119 5-127 57-190 (447)
259 KOG0090|consensus 99.6 4.6E-15 1E-19 112.4 7.4 188 10-220 39-237 (238)
260 KOG1145|consensus 99.6 4.4E-14 9.6E-19 120.5 13.9 183 10-244 154-338 (683)
261 KOG1144|consensus 99.6 8.1E-15 1.8E-19 128.5 8.3 184 11-225 477-690 (1064)
262 PTZ00327 eukaryotic translatio 99.6 1.2E-13 2.5E-18 119.9 14.8 166 5-222 30-233 (460)
263 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 2.4E-13 5.3E-18 106.0 14.5 166 10-224 1-186 (196)
264 PF01926 MMR_HSR1: 50S ribosom 99.5 1.3E-13 2.8E-18 98.4 11.5 106 11-123 1-116 (116)
265 COG0536 Obg Predicted GTPase [ 99.5 2E-13 4.4E-18 110.8 13.8 157 11-225 161-336 (369)
266 KOG1532|consensus 99.5 1.3E-14 2.7E-19 114.1 6.3 141 58-230 116-272 (366)
267 COG1163 DRG Predicted GTPase [ 99.5 4.5E-13 9.8E-18 107.9 14.5 206 7-223 61-290 (365)
268 COG5256 TEF1 Translation elong 99.5 1.7E-13 3.6E-18 113.9 12.0 186 8-241 6-238 (428)
269 PF05783 DLIC: Dynein light in 99.5 5.5E-13 1.2E-17 115.5 15.0 204 8-226 24-268 (472)
270 smart00010 small_GTPase Small 99.5 2.9E-14 6.3E-19 102.7 5.3 89 10-127 1-90 (124)
271 KOG1191|consensus 99.5 2.1E-13 4.5E-18 115.3 10.4 169 7-226 266-454 (531)
272 PRK09602 translation-associate 99.5 1.7E-12 3.7E-17 111.0 15.6 83 10-92 2-113 (396)
273 PRK14845 translation initiatio 99.5 1.5E-12 3.2E-17 121.8 14.8 100 21-127 473-591 (1049)
274 TIGR00490 aEF-2 translation el 99.4 3.1E-13 6.6E-18 124.3 9.6 120 6-129 16-153 (720)
275 PRK13768 GTPase; Provisional 99.4 7.7E-13 1.7E-17 107.0 10.5 136 59-223 98-248 (253)
276 COG1084 Predicted GTPase [Gene 99.4 3.4E-12 7.4E-17 103.3 13.3 158 8-224 167-338 (346)
277 PF03029 ATP_bind_1: Conserved 99.4 3.2E-13 7E-18 107.9 7.3 129 59-221 92-236 (238)
278 PRK09866 hypothetical protein; 99.4 1.2E-11 2.5E-16 109.0 15.8 68 58-127 230-302 (741)
279 COG0480 FusA Translation elong 99.4 1.2E-11 2.5E-16 111.8 15.1 218 6-227 7-283 (697)
280 COG4108 PrfC Peptide chain rel 99.4 5.9E-12 1.3E-16 105.2 10.5 127 7-137 10-156 (528)
281 TIGR00157 ribosome small subun 99.4 4.4E-12 9.6E-17 102.0 9.6 96 69-219 24-120 (245)
282 cd01853 Toc34_like Toc34-like 99.4 2E-11 4.3E-16 98.2 13.1 121 5-128 27-163 (249)
283 cd00066 G-alpha G protein alph 99.3 2.2E-11 4.8E-16 101.7 13.3 141 57-226 160-315 (317)
284 PF04548 AIG1: AIG1 family; I 99.3 2.7E-11 5.9E-16 95.5 13.0 168 10-225 1-189 (212)
285 PLN00116 translation elongatio 99.3 4.9E-12 1.1E-16 118.1 9.5 119 5-127 15-163 (843)
286 TIGR00101 ureG urease accessor 99.3 1.9E-11 4.2E-16 95.2 11.3 28 195-222 169-196 (199)
287 KOG1707|consensus 99.3 7.9E-11 1.7E-15 101.7 15.1 166 4-225 420-586 (625)
288 TIGR00991 3a0901s02IAP34 GTP-b 99.3 2.6E-11 5.5E-16 99.2 11.4 120 6-127 35-166 (313)
289 COG2895 CysN GTPases - Sulfate 99.3 3.9E-11 8.4E-16 97.8 11.8 155 7-211 4-192 (431)
290 PTZ00416 elongation factor 2; 99.3 1.1E-11 2.4E-16 115.6 9.5 118 6-127 16-157 (836)
291 KOG1490|consensus 99.3 1.8E-11 3.8E-16 103.9 8.5 165 6-224 165-343 (620)
292 smart00275 G_alpha G protein a 99.3 7.3E-11 1.6E-15 99.4 11.7 140 57-225 183-337 (342)
293 TIGR00073 hypB hydrogenase acc 99.3 1.3E-10 2.9E-15 91.4 12.5 24 197-220 182-205 (207)
294 COG4917 EutP Ethanolamine util 99.2 1.6E-11 3.5E-16 85.4 6.1 137 11-220 3-144 (148)
295 PRK07560 elongation factor EF- 99.2 4.1E-11 9E-16 110.6 9.7 119 6-128 17-153 (731)
296 PTZ00258 GTP-binding protein; 99.2 4.7E-10 1E-14 95.2 14.8 86 7-92 19-126 (390)
297 COG1217 TypA Predicted membran 99.2 2.4E-10 5.2E-15 96.4 12.6 118 8-129 4-135 (603)
298 KOG0461|consensus 99.2 5.8E-10 1.3E-14 90.8 13.2 120 1-127 1-135 (522)
299 KOG0458|consensus 99.2 4.1E-10 8.9E-15 97.3 11.8 118 8-127 176-328 (603)
300 COG5257 GCD11 Translation init 99.2 2.3E-10 5E-15 92.3 9.5 171 5-226 6-206 (415)
301 cd01882 BMS1 Bms1. Bms1 is an 99.1 1.1E-09 2.3E-14 87.2 12.6 109 7-127 37-146 (225)
302 PRK09435 membrane ATPase/prote 99.1 1.5E-09 3.1E-14 90.6 13.8 109 57-225 148-263 (332)
303 KOG3886|consensus 99.1 6.9E-11 1.5E-15 91.0 4.9 118 9-128 4-130 (295)
304 KOG0465|consensus 99.1 3.1E-10 6.7E-15 98.4 9.1 218 5-226 35-312 (721)
305 PF05049 IIGP: Interferon-indu 99.1 1.1E-09 2.5E-14 91.9 11.7 112 7-126 33-153 (376)
306 PRK09601 GTP-binding protein Y 99.1 5E-09 1.1E-13 88.0 14.6 83 10-92 3-107 (364)
307 TIGR02836 spore_IV_A stage IV 99.1 4.5E-09 9.8E-14 88.5 14.0 117 6-125 14-191 (492)
308 KOG0705|consensus 99.1 4.6E-10 1E-14 96.2 8.1 166 5-226 26-193 (749)
309 PF00350 Dynamin_N: Dynamin fa 99.0 2.1E-09 4.4E-14 81.7 9.8 63 59-124 102-168 (168)
310 COG0378 HypB Ni2+-binding GTPa 99.0 3.3E-09 7.2E-14 80.2 10.3 35 187-221 164-200 (202)
311 PF00735 Septin: Septin; Inte 99.0 1.9E-08 4E-13 82.5 15.3 117 8-129 3-157 (281)
312 TIGR00750 lao LAO/AO transport 99.0 6.5E-09 1.4E-13 86.3 12.2 110 57-222 126-238 (300)
313 COG3276 SelB Selenocysteine-sp 98.9 1.3E-08 2.9E-13 85.7 12.0 154 11-222 2-162 (447)
314 PRK10463 hydrogenase nickel in 98.9 5.3E-09 1.2E-13 85.1 9.1 25 196-220 263-287 (290)
315 COG5258 GTPBP1 GTPase [General 98.9 1.9E-08 4.1E-13 83.3 12.0 182 4-218 112-335 (527)
316 TIGR00993 3a0901s04IAP86 chlor 98.9 1.2E-08 2.7E-13 90.5 11.4 123 5-129 114-251 (763)
317 KOG0410|consensus 98.9 4.2E-09 9E-14 85.3 6.8 157 7-225 176-344 (410)
318 KOG0082|consensus 98.9 1.3E-08 2.9E-13 84.5 10.0 140 56-227 193-349 (354)
319 KOG0468|consensus 98.9 1.3E-08 2.8E-13 89.4 10.1 119 5-127 124-262 (971)
320 KOG0467|consensus 98.9 9.4E-09 2E-13 91.4 8.6 122 1-126 1-136 (887)
321 KOG1486|consensus 98.9 1.3E-07 2.9E-12 74.1 13.7 198 9-222 62-288 (364)
322 smart00053 DYNc Dynamin, GTPas 98.9 2.6E-08 5.7E-13 79.5 10.1 68 58-128 125-206 (240)
323 cd01855 YqeH YqeH. YqeH is an 98.8 1.9E-08 4.1E-13 78.0 8.7 94 71-222 24-125 (190)
324 KOG1143|consensus 98.8 1.7E-07 3.6E-12 77.5 12.7 179 6-217 164-383 (591)
325 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.9E-08 4E-13 74.2 6.3 54 11-68 85-138 (141)
326 cd01900 YchF YchF subfamily. 98.8 3.7E-08 8E-13 80.2 8.5 81 12-92 1-103 (274)
327 COG0050 TufB GTPases - transla 98.8 3.5E-08 7.5E-13 79.0 8.0 118 6-127 9-141 (394)
328 PRK12289 GTPase RsgA; Reviewed 98.8 5.4E-08 1.2E-12 82.1 9.7 91 73-219 81-172 (352)
329 cd01859 MJ1464 MJ1464. This f 98.7 3.8E-08 8.2E-13 73.8 7.6 95 71-222 2-96 (156)
330 cd01854 YjeQ_engC YjeQ/EngC. 98.7 4.9E-08 1.1E-12 80.6 8.4 88 76-219 73-161 (287)
331 PF03308 ArgK: ArgK protein; 98.7 2.3E-08 5E-13 79.3 6.0 105 58-222 122-230 (266)
332 PRK00098 GTPase RsgA; Reviewed 98.7 6.3E-08 1.4E-12 80.3 8.5 86 78-218 77-163 (298)
333 cd04178 Nucleostemin_like Nucl 98.7 5.2E-08 1.1E-12 74.1 6.7 56 8-67 116-171 (172)
334 cd01858 NGP_1 NGP-1. Autoanti 98.7 7.4E-08 1.6E-12 72.4 7.3 56 8-67 101-156 (157)
335 KOG2486|consensus 98.7 4.7E-08 1E-12 77.7 6.3 115 4-127 131-261 (320)
336 COG0012 Predicted GTPase, prob 98.7 7.9E-07 1.7E-11 74.0 13.7 84 9-92 2-108 (372)
337 KOG3887|consensus 98.7 1.8E-07 4E-12 72.9 9.2 115 9-127 27-148 (347)
338 COG5019 CDC3 Septin family pro 98.6 5.9E-07 1.3E-11 74.4 12.0 117 7-128 21-176 (373)
339 cd01856 YlqF YlqF. Proteins o 98.6 1.1E-07 2.4E-12 72.4 7.0 58 7-68 113-170 (171)
340 PRK12288 GTPase RsgA; Reviewed 98.6 2.3E-07 5E-12 78.3 9.3 88 79-219 118-205 (347)
341 cd01859 MJ1464 MJ1464. This f 98.6 1.4E-07 3.1E-12 70.7 7.2 56 8-67 100-155 (156)
342 COG1703 ArgK Putative periplas 98.6 5.6E-07 1.2E-11 72.6 10.5 114 58-227 144-259 (323)
343 TIGR03597 GTPase_YqeH ribosome 98.6 1.3E-07 2.7E-12 80.5 6.8 99 68-220 50-151 (360)
344 PRK09563 rbgA GTPase YlqF; Rev 98.6 3E-07 6.4E-12 76.0 8.1 59 7-69 119-177 (287)
345 TIGR03596 GTPase_YlqF ribosome 98.5 2.7E-07 5.9E-12 75.8 7.2 58 7-68 116-173 (276)
346 PRK10416 signal recognition pa 98.5 7.3E-07 1.6E-11 74.4 9.8 145 9-216 114-304 (318)
347 KOG0464|consensus 98.5 4.9E-08 1.1E-12 81.6 2.5 119 8-130 36-170 (753)
348 KOG4273|consensus 98.5 2.5E-06 5.4E-11 67.0 11.6 185 9-223 4-223 (418)
349 cd01855 YqeH YqeH. YqeH is an 98.5 2.4E-07 5.3E-12 71.8 5.7 56 9-67 127-189 (190)
350 KOG2655|consensus 98.5 3.8E-06 8.2E-11 70.1 12.7 117 6-127 18-171 (366)
351 COG1161 Predicted GTPases [Gen 98.5 4E-07 8.6E-12 76.2 6.5 56 9-68 132-187 (322)
352 PRK14974 cell division protein 98.4 1.6E-06 3.4E-11 72.7 9.1 96 58-216 223-324 (336)
353 TIGR00064 ftsY signal recognit 98.4 9.2E-07 2E-11 72.3 7.2 65 57-127 154-230 (272)
354 cd01858 NGP_1 NGP-1. Autoanti 98.4 2E-06 4.4E-11 64.5 8.3 46 78-127 5-52 (157)
355 KOG1547|consensus 98.4 1.8E-06 3.8E-11 67.5 7.9 66 6-71 43-117 (336)
356 KOG1954|consensus 98.4 2.4E-06 5.1E-11 70.8 8.6 120 7-131 56-228 (532)
357 cd01849 YlqF_related_GTPase Yl 98.4 3.5E-06 7.6E-11 63.1 8.9 84 83-221 1-84 (155)
358 cd01856 YlqF YlqF. Proteins o 98.3 2.6E-06 5.7E-11 64.9 7.6 91 73-222 11-101 (171)
359 cd01849 YlqF_related_GTPase Yl 98.3 1.7E-06 3.6E-11 64.8 6.3 56 7-67 98-154 (155)
360 COG1618 Predicted nucleotide k 98.3 4E-05 8.6E-10 56.5 12.9 56 8-66 4-59 (179)
361 KOG0463|consensus 98.3 4.4E-06 9.6E-11 69.4 8.3 177 8-217 132-353 (641)
362 TIGR00092 GTP-binding protein 98.3 4E-06 8.7E-11 70.7 8.1 83 10-92 3-108 (368)
363 KOG0460|consensus 98.3 4.6E-06 9.9E-11 68.4 7.9 119 6-127 51-183 (449)
364 TIGR03348 VI_IcmF type VI secr 98.2 2.6E-06 5.6E-11 82.9 7.4 111 12-127 114-256 (1169)
365 cd01851 GBP Guanylate-binding 98.2 1.5E-05 3.2E-10 63.5 10.0 88 6-94 4-104 (224)
366 TIGR01425 SRP54_euk signal rec 98.2 2E-05 4.4E-10 68.0 10.8 113 9-127 100-252 (429)
367 PF03193 DUF258: Protein of un 98.2 1.4E-06 2.9E-11 65.1 2.9 23 11-33 37-59 (161)
368 PRK12288 GTPase RsgA; Reviewed 98.2 4.3E-06 9.3E-11 70.6 6.3 58 12-72 208-271 (347)
369 TIGR03596 GTPase_YlqF ribosome 98.1 8.7E-06 1.9E-10 66.9 7.5 91 75-224 15-105 (276)
370 PRK12289 GTPase RsgA; Reviewed 98.1 5.1E-06 1.1E-10 70.3 6.1 56 12-70 175-236 (352)
371 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 7.6E-06 1.7E-10 60.2 6.1 48 76-127 6-55 (141)
372 PRK13796 GTPase YqeH; Provisio 98.1 5.1E-06 1.1E-10 70.9 5.7 57 10-69 161-221 (365)
373 KOG1487|consensus 98.1 8.1E-06 1.8E-10 64.6 6.2 200 10-222 60-281 (358)
374 TIGR03597 GTPase_YqeH ribosome 98.1 8.3E-06 1.8E-10 69.5 6.5 57 10-69 155-215 (360)
375 TIGR00157 ribosome small subun 98.1 8.2E-06 1.8E-10 65.8 5.9 58 11-72 122-185 (245)
376 PRK14721 flhF flagellar biosyn 98.1 1.4E-05 3E-10 68.9 7.5 23 9-31 191-213 (420)
377 KOG3929|consensus 98.1 1.9E-06 4.1E-11 68.0 2.0 119 6-127 42-203 (363)
378 KOG1491|consensus 98.0 2.1E-05 4.5E-10 64.6 7.8 85 8-92 19-125 (391)
379 COG5192 BMS1 GTP-binding prote 98.0 5.4E-05 1.2E-09 66.2 10.7 108 8-127 68-176 (1077)
380 PF00448 SRP54: SRP54-type pro 98.0 2.6E-05 5.7E-10 60.6 8.1 64 58-127 84-153 (196)
381 KOG0447|consensus 98.0 5.2E-05 1.1E-09 66.0 10.4 162 4-168 303-542 (980)
382 cd03115 SRP The signal recogni 98.0 2.7E-05 6E-10 59.3 8.0 65 57-127 82-152 (173)
383 cd03112 CobW_like The function 98.0 1.8E-05 3.9E-10 59.4 6.7 64 57-126 86-158 (158)
384 PRK13796 GTPase YqeH; Provisio 98.0 1.9E-05 4.1E-10 67.4 7.5 87 80-220 67-157 (365)
385 KOG0099|consensus 98.0 2.3E-05 5.1E-10 62.1 7.2 73 57-129 201-284 (379)
386 PRK01889 GTPase RsgA; Reviewed 98.0 3.2E-05 7E-10 65.8 8.7 46 79-127 110-155 (356)
387 PRK14722 flhF flagellar biosyn 98.0 4.1E-05 9E-10 65.0 9.2 22 10-31 138-159 (374)
388 PF09547 Spore_IV_A: Stage IV 98.0 0.00015 3.3E-09 61.6 12.2 25 7-31 15-39 (492)
389 KOG1534|consensus 98.0 1.6E-05 3.4E-10 61.1 5.3 31 194-224 222-253 (273)
390 KOG0448|consensus 98.0 0.00015 3.3E-09 64.7 11.9 65 59-127 207-274 (749)
391 PRK09563 rbgA GTPase YlqF; Rev 97.9 6.7E-05 1.4E-09 62.0 9.1 113 75-246 18-133 (287)
392 PF03266 NTPase_1: NTPase; In 97.9 9.3E-05 2E-09 56.1 9.0 52 11-65 1-52 (168)
393 TIGR00959 ffh signal recogniti 97.9 4.5E-05 9.7E-10 66.1 7.8 65 57-127 182-252 (428)
394 PRK12727 flagellar biosynthesi 97.9 0.00015 3.3E-09 63.9 10.9 22 9-30 350-371 (559)
395 PRK13695 putative NTPase; Prov 97.9 0.00035 7.6E-09 53.3 11.9 22 10-31 1-22 (174)
396 cd01854 YjeQ_engC YjeQ/EngC. 97.9 2.8E-05 6.1E-10 64.3 6.1 60 10-72 162-227 (287)
397 KOG0466|consensus 97.9 7.8E-06 1.7E-10 66.1 2.2 163 7-224 36-243 (466)
398 PRK00771 signal recognition pa 97.9 0.00018 3.8E-09 62.7 10.7 113 8-127 94-245 (437)
399 PRK00098 GTPase RsgA; Reviewed 97.8 4E-05 8.6E-10 63.7 6.1 23 11-33 166-188 (298)
400 KOG1424|consensus 97.8 2.3E-05 4.9E-10 67.7 4.3 57 9-69 314-370 (562)
401 COG3523 IcmF Type VI protein s 97.8 4.5E-05 9.7E-10 72.9 6.6 115 12-128 128-270 (1188)
402 PRK11889 flhF flagellar biosyn 97.8 0.00035 7.6E-09 59.5 10.8 21 10-30 242-262 (436)
403 COG1162 Predicted GTPases [Gen 97.8 2.6E-05 5.7E-10 63.6 3.8 21 11-31 166-186 (301)
404 PRK10867 signal recognition pa 97.8 0.00011 2.3E-09 63.9 7.7 65 57-127 183-253 (433)
405 PF00503 G-alpha: G-protein al 97.7 7.9E-05 1.7E-09 64.4 6.9 75 56-130 234-319 (389)
406 COG1162 Predicted GTPases [Gen 97.7 0.00027 5.8E-09 57.8 9.3 93 74-220 72-165 (301)
407 PRK12724 flagellar biosynthesi 97.7 9.9E-05 2.1E-09 63.4 6.8 22 10-31 224-245 (432)
408 PRK05703 flhF flagellar biosyn 97.7 0.0003 6.6E-09 61.2 9.8 20 11-30 223-242 (424)
409 KOG1533|consensus 97.7 4.3E-05 9.3E-10 59.7 3.9 68 58-127 97-176 (290)
410 PRK06995 flhF flagellar biosyn 97.7 0.0001 2.2E-09 64.6 6.7 21 10-30 257-277 (484)
411 COG1419 FlhF Flagellar GTP-bin 97.7 0.00033 7.2E-09 59.5 9.2 111 9-127 203-351 (407)
412 PRK12726 flagellar biosynthesi 97.7 7.3E-05 1.6E-09 63.3 5.2 22 9-30 206-227 (407)
413 PRK14723 flhF flagellar biosyn 97.6 0.00031 6.6E-09 64.8 8.3 21 11-31 187-207 (767)
414 PRK06731 flhF flagellar biosyn 97.6 0.00029 6.2E-09 57.5 7.2 111 10-127 76-224 (270)
415 cd02042 ParA ParA and ParB of 97.5 0.00035 7.5E-09 48.4 6.6 82 12-105 2-84 (104)
416 KOG2485|consensus 97.5 0.00021 4.5E-09 58.3 5.7 60 6-68 140-206 (335)
417 PRK12723 flagellar biosynthesi 97.5 0.001 2.2E-08 57.1 10.0 113 9-127 174-325 (388)
418 cd03114 ArgK-like The function 97.5 0.00061 1.3E-08 50.5 7.6 58 57-125 91-148 (148)
419 KOG0780|consensus 97.5 0.0002 4.3E-09 60.0 5.2 97 10-106 102-238 (483)
420 PF06858 NOG1: Nucleolar GTP-b 97.5 0.0004 8.7E-09 41.9 5.1 45 80-125 12-58 (58)
421 KOG3859|consensus 97.5 0.00027 6E-09 56.7 5.6 64 5-68 38-105 (406)
422 KOG0084|consensus 97.5 0.0001 2.2E-09 56.0 3.0 51 125-175 64-114 (205)
423 cd02038 FleN-like FleN is a me 97.4 0.00045 9.7E-09 50.7 6.3 107 13-127 4-110 (139)
424 cd00009 AAA The AAA+ (ATPases 97.4 0.00079 1.7E-08 49.0 7.1 25 9-33 19-43 (151)
425 KOG0459|consensus 97.4 0.00043 9.3E-09 58.3 6.0 122 6-127 76-230 (501)
426 KOG2484|consensus 97.4 0.00013 2.8E-09 61.2 2.9 57 8-68 251-307 (435)
427 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.0014 3E-08 44.2 7.6 96 12-122 2-99 (99)
428 smart00072 GuKc Guanylate kina 97.3 0.0037 8E-08 48.1 10.6 22 11-32 4-25 (184)
429 KOG0469|consensus 97.3 0.00065 1.4E-08 58.9 6.5 117 7-127 17-163 (842)
430 PF13207 AAA_17: AAA domain; P 97.3 0.00022 4.7E-09 50.8 3.0 21 11-31 1-21 (121)
431 COG0563 Adk Adenylate kinase a 97.3 0.00021 4.6E-09 54.6 2.9 23 10-32 1-23 (178)
432 COG3640 CooC CO dehydrogenase 97.2 0.00097 2.1E-08 52.4 6.3 63 59-127 135-198 (255)
433 PF13555 AAA_29: P-loop contai 97.2 0.00031 6.6E-09 43.5 2.8 21 11-31 25-45 (62)
434 PRK11537 putative GTP-binding 97.2 0.0045 9.8E-08 51.9 10.7 64 58-127 91-163 (318)
435 PRK08118 topology modulation p 97.2 0.00027 5.8E-09 53.6 3.0 21 11-31 3-23 (167)
436 cd03111 CpaE_like This protein 97.2 0.0011 2.3E-08 46.2 5.8 99 16-123 7-106 (106)
437 KOG2423|consensus 97.2 0.00018 3.9E-09 60.4 2.0 89 4-99 302-392 (572)
438 PRK07261 topology modulation p 97.2 0.0003 6.5E-09 53.5 3.0 22 10-31 1-22 (171)
439 PF13671 AAA_33: AAA domain; P 97.2 0.0003 6.5E-09 51.6 2.8 20 12-31 2-21 (143)
440 KOG0079|consensus 97.1 0.00028 6E-09 51.1 2.0 54 124-177 62-115 (198)
441 COG1126 GlnQ ABC-type polar am 97.1 0.00042 9.2E-09 53.8 3.0 21 11-31 30-50 (240)
442 KOG0080|consensus 97.1 0.00054 1.2E-08 50.4 3.3 54 124-177 65-118 (209)
443 PF13521 AAA_28: AAA domain; P 97.0 0.00039 8.4E-09 52.4 2.4 22 11-32 1-22 (163)
444 KOG0085|consensus 97.0 0.00064 1.4E-08 53.2 3.5 25 5-29 35-59 (359)
445 KOG0087|consensus 97.0 0.0009 1.9E-08 51.5 4.2 55 121-175 65-119 (222)
446 COG3845 ABC-type uncharacteriz 97.0 0.004 8.6E-08 54.1 8.4 54 70-127 147-203 (501)
447 KOG0098|consensus 97.0 0.00075 1.6E-08 50.9 3.4 55 121-175 57-111 (216)
448 PF11111 CENP-M: Centromere pr 97.0 0.053 1.2E-06 40.8 13.0 144 3-222 9-153 (176)
449 COG0523 Putative GTPases (G3E 97.0 0.013 2.8E-07 49.1 10.9 110 12-127 4-158 (323)
450 cd02019 NK Nucleoside/nucleoti 97.0 0.00077 1.7E-08 43.0 2.8 21 12-32 2-22 (69)
451 COG1136 SalX ABC-type antimicr 97.0 0.00061 1.3E-08 53.7 2.8 21 11-31 33-53 (226)
452 TIGR00150 HI0065_YjeE ATPase, 96.9 0.003 6.5E-08 45.7 5.9 22 11-32 24-45 (133)
453 smart00382 AAA ATPases associa 96.9 0.00081 1.8E-08 48.5 3.0 25 10-34 3-27 (148)
454 COG1116 TauB ABC-type nitrate/ 96.9 0.00074 1.6E-08 53.6 2.9 20 12-31 32-51 (248)
455 KOG0083|consensus 96.9 0.00075 1.6E-08 48.0 2.6 51 123-173 51-101 (192)
456 PF00005 ABC_tran: ABC transpo 96.9 0.00087 1.9E-08 48.8 3.1 22 11-32 13-34 (137)
457 PRK03839 putative kinase; Prov 96.9 0.00079 1.7E-08 51.6 2.8 21 11-31 2-22 (180)
458 cd02036 MinD Bacterial cell di 96.9 0.013 2.8E-07 44.5 9.5 64 59-127 64-127 (179)
459 PRK06217 hypothetical protein; 96.9 0.00094 2E-08 51.4 3.1 23 10-32 2-24 (183)
460 PF00004 AAA: ATPase family as 96.8 0.00098 2.1E-08 47.9 2.8 21 12-32 1-21 (132)
461 COG1120 FepC ABC-type cobalami 96.8 0.00094 2E-08 53.8 2.8 21 11-31 30-50 (258)
462 PRK10078 ribose 1,5-bisphospho 96.8 0.0011 2.4E-08 51.1 3.1 22 11-32 4-25 (186)
463 PF13238 AAA_18: AAA domain; P 96.8 0.0011 2.3E-08 47.5 2.7 21 12-32 1-21 (129)
464 cd00071 GMPK Guanosine monopho 96.8 0.0011 2.4E-08 48.5 2.8 21 12-32 2-22 (137)
465 KOG0078|consensus 96.8 0.00082 1.8E-08 51.7 2.2 54 122-175 64-117 (207)
466 PRK14530 adenylate kinase; Pro 96.8 0.0011 2.3E-08 52.4 3.0 22 10-31 4-25 (215)
467 cd03222 ABC_RNaseL_inhibitor T 96.7 0.008 1.7E-07 46.0 7.3 22 11-32 27-48 (177)
468 PRK14532 adenylate kinase; Pro 96.7 0.0012 2.6E-08 51.0 2.8 22 10-31 1-22 (188)
469 cd00820 PEPCK_HprK Phosphoenol 96.7 0.0013 2.8E-08 45.6 2.7 21 10-30 16-36 (107)
470 PRK00625 shikimate kinase; Pro 96.7 0.0013 2.7E-08 50.2 2.9 22 10-31 1-22 (173)
471 PF07728 AAA_5: AAA domain (dy 96.7 0.0014 3E-08 47.9 3.0 21 11-31 1-21 (139)
472 cd03238 ABC_UvrA The excision 96.7 0.0015 3.2E-08 49.9 3.1 21 10-30 22-42 (176)
473 COG3840 ThiQ ABC-type thiamine 96.7 0.004 8.6E-08 47.3 5.1 21 11-31 27-47 (231)
474 PRK13949 shikimate kinase; Pro 96.7 0.0016 3.4E-08 49.5 3.0 21 11-31 3-23 (169)
475 TIGR02322 phosphon_PhnN phosph 96.7 0.0014 3E-08 50.1 2.7 22 11-32 3-24 (179)
476 KOG3347|consensus 96.6 0.0013 2.9E-08 48.0 2.3 27 5-31 3-29 (176)
477 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0015 3.1E-08 50.3 2.7 22 10-31 4-25 (188)
478 PRK10646 ADP-binding protein; 96.6 0.0099 2.1E-07 44.1 6.9 22 11-32 30-51 (153)
479 PF02367 UPF0079: Uncharacteri 96.6 0.0041 8.8E-08 44.4 4.7 22 10-31 16-37 (123)
480 CHL00072 chlL photochlorophyll 96.6 0.32 6.8E-06 40.4 16.7 67 57-125 115-183 (290)
481 PF03205 MobB: Molybdopterin g 96.6 0.0017 3.7E-08 47.6 2.9 22 11-32 2-23 (140)
482 TIGR03263 guanyl_kin guanylate 96.6 0.0016 3.5E-08 49.8 2.9 22 11-32 3-24 (180)
483 COG0194 Gmk Guanylate kinase [ 96.6 0.0012 2.6E-08 50.1 2.0 24 10-33 5-28 (191)
484 PF04665 Pox_A32: Poxvirus A32 96.6 0.0017 3.7E-08 51.8 2.9 24 9-32 13-36 (241)
485 PRK02496 adk adenylate kinase; 96.6 0.0019 4.1E-08 49.7 3.1 22 10-31 2-23 (184)
486 PRK14737 gmk guanylate kinase; 96.6 0.002 4.3E-08 49.7 3.2 22 11-32 6-27 (186)
487 PRK14531 adenylate kinase; Pro 96.6 0.0019 4.2E-08 49.6 3.1 23 9-31 2-24 (183)
488 COG1117 PstB ABC-type phosphat 96.6 0.0017 3.7E-08 50.5 2.7 19 12-30 36-54 (253)
489 cd01131 PilT Pilus retraction 96.6 0.0073 1.6E-07 47.1 6.3 21 12-32 4-24 (198)
490 PTZ00088 adenylate kinase 1; P 96.6 0.0018 4E-08 51.6 2.9 22 10-31 7-28 (229)
491 cd01130 VirB11-like_ATPase Typ 96.6 0.002 4.3E-08 49.7 3.0 23 10-32 26-48 (186)
492 PRK01889 GTPase RsgA; Reviewed 96.6 0.0025 5.4E-08 54.4 3.8 23 10-32 196-218 (356)
493 COG0552 FtsY Signal recognitio 96.5 0.015 3.2E-07 48.4 8.0 23 8-30 138-160 (340)
494 COG3638 ABC-type phosphate/pho 96.5 0.0019 4.1E-08 50.9 2.7 21 11-31 32-52 (258)
495 COG1161 Predicted GTPases [Gen 96.5 0.0055 1.2E-07 51.5 5.7 57 65-127 17-74 (322)
496 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.0064 1.4E-07 45.4 5.6 22 11-32 27-48 (157)
497 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.5 0.0023 5E-08 50.6 3.1 22 11-32 32-53 (218)
498 cd01428 ADK Adenylate kinase ( 96.5 0.0019 4.1E-08 50.0 2.5 21 11-31 1-21 (194)
499 KOG0094|consensus 96.5 0.0033 7.1E-08 48.0 3.6 52 124-175 76-127 (221)
500 cd02023 UMPK Uridine monophosp 96.5 0.0022 4.7E-08 50.0 2.7 21 12-32 2-22 (198)
No 1
>KOG0084|consensus
Probab=100.00 E-value=6.3e-45 Score=269.88 Aligned_cols=200 Identities=50% Similarity=0.897 Sum_probs=181.8
Q ss_pred CccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcC
Q psy9621 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRG 81 (253)
Q Consensus 2 ~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 81 (253)
....+++.+||+|+|+.|||||+|+.||..+.|.+.+..|+|+++..+++.++++.++++||||+|+++|+.+...|+++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621 82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 161 (253)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
++++|||||+++.+||..+..|+.++.++...++|.++||||+|+.
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~---------------------------------- 127 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT---------------------------------- 127 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH----------------------------------
Confidence 9999999999999999999999999999998999999999999998
Q ss_pred HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCc-eEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCC--CCCeEe
Q psy9621 162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVR-FMETSAKANINIEKAFIELATAIYDKTSGRDPLE--APDRVT 238 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~--~~~~~~ 238 (253)
+.+. ++.++++.|+.+++++ ++++||+++.||+++|..|...+..++..+.... +...+.
T Consensus 128 ------------~~~~-----v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~~~~~~~~~q 190 (205)
T KOG0084|consen 128 ------------EKRV-----VSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKWSTASLESVQ 190 (205)
T ss_pred ------------hhee-----cCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCCCcCCCCcee
Confidence 4454 7888999999999998 9999999999999999999999988877666655 345566
Q ss_pred ecCCCCCCCCCCCCC
Q psy9621 239 IDKKPDRGGMAGGCC 253 (253)
Q Consensus 239 ~~~~~~~~~~~~~c~ 253 (253)
+.. .+.+.+.++||
T Consensus 191 l~~-~p~~~~~~~~C 204 (205)
T KOG0084|consen 191 LKG-TPVKKSNGGCC 204 (205)
T ss_pred eCC-CCcccccCCCC
Confidence 655 45555677788
No 2
>KOG0078|consensus
Probab=100.00 E-value=3.9e-42 Score=258.81 Aligned_cols=177 Identities=72% Similarity=1.157 Sum_probs=169.1
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR 80 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (253)
|++.++++.+||+++|++|||||+|+.+|..+.|...+..|+|+++...++.+++..+.+++|||+|+++|+.+...|++
T Consensus 4 ~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyr 83 (207)
T KOG0078|consen 4 MAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYR 83 (207)
T ss_pred cccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHh
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
++.++++|||+++..||+++..|+..|.++...++|+++||||+|+.
T Consensus 84 gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~--------------------------------- 130 (207)
T KOG0078|consen 84 GAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE--------------------------------- 130 (207)
T ss_pred hcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc---------------------------------
Confidence 99999999999999999999999999999998899999999999998
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR 228 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 228 (253)
..++ +..+.++++|.++|++++||||++|.||+++|..|.+.+..+....
T Consensus 131 -------------~~R~-----V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 131 -------------EKRQ-----VSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLEDA 180 (207)
T ss_pred -------------cccc-----ccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcchh
Confidence 4455 8889999999999999999999999999999999999999766544
No 3
>KOG0092|consensus
Probab=100.00 E-value=9e-42 Score=252.17 Aligned_cols=195 Identities=35% Similarity=0.635 Sum_probs=174.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+++|+.+||||||+.||..+.|++...||+|..|..+++.+.+..+++.||||+|+++|+++..+|+|+++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35789999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
+|||+++.+||..+..|+.++.+...+++-+.++|||+|+.
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~--------------------------------------- 123 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL--------------------------------------- 123 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh---------------------------------------
Confidence 99999999999999999999999998889999999999998
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCC--CCeEeecCCCC
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEA--PDRVTIDKKPD 244 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 244 (253)
..++ +..+++..+++..+..+|++||+||.||+++|..|.+.+.........-.+ +..+++++..+
T Consensus 124 -------~~R~-----V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~~ 191 (200)
T KOG0092|consen 124 -------ERRE-----VEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQERQGLPNRRQGVDLNSNQE 191 (200)
T ss_pred -------hccc-----ccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCccccccccccccccceecccCCC
Confidence 4455 889999999999999999999999999999999999999988776665222 25666665532
Q ss_pred CCCCCCCCC
Q psy9621 245 RGGMAGGCC 253 (253)
Q Consensus 245 ~~~~~~~c~ 253 (253)
+. .+++||
T Consensus 192 ~~-~~~~~C 199 (200)
T KOG0092|consen 192 PA-RPSGCC 199 (200)
T ss_pred Cc-CcCCcC
Confidence 22 256666
No 4
>KOG0098|consensus
Probab=100.00 E-value=1.5e-40 Score=243.71 Aligned_cols=171 Identities=50% Similarity=0.899 Sum_probs=163.5
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
+.+.+|++++|+.|||||+|+.+|....|.+.+..|+|+++....+.++++.+++++|||.|++.|....+.|++++.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
|+|||++.++||..+..|+..+.++...++-++++|||+|+.
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~-------------------------------------- 124 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE-------------------------------------- 124 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh--------------------------------------
Confidence 999999999999999999999999988999999999999998
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSG 227 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 227 (253)
..++ +..+++++||+++|+.++++||++++||+++|..+...++++.+.
T Consensus 125 --------~rR~-----Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~ 173 (216)
T KOG0098|consen 125 --------ARRE-----VSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQD 173 (216)
T ss_pred --------cccc-----ccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 5555 899999999999999999999999999999999999999887653
No 5
>KOG0094|consensus
Probab=100.00 E-value=1e-39 Score=241.26 Aligned_cols=186 Identities=37% Similarity=0.642 Sum_probs=167.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+|++|+|+.+||||||++||.+..|...|.+|+|+||...++.+.+..+.+++|||+|+++|+.+...|++++.++|+|
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviV 101 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 101 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhccc-ccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHANE-DVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||+++..||+...+|++.++...+. ++-+++||||.||.
T Consensus 102 yDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~---------------------------------------- 141 (221)
T KOG0094|consen 102 YDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS---------------------------------------- 141 (221)
T ss_pred EeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc----------------------------------------
Confidence 9999999999999999999998876 48899999999998
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC--CCCCCCCeEeecCCCCC
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR--DPLEAPDRVTIDKKPDR 245 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 245 (253)
+.++ +..++++..+++++..|+++||++|.||..+|..|...+...+..+ ..+.++..+++...++.
T Consensus 142 ------dkrq-----vs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~~~~~~~~~~~~~i~~k~~~~~ 210 (221)
T KOG0094|consen 142 ------DKRQ-----VSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEVLEILSKQESMVDINLKGSPNE 210 (221)
T ss_pred ------chhh-----hhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccccccccccccceeEEccCCCCc
Confidence 5566 8888999999999999999999999999999999999998875543 22333666666633333
No 6
>KOG0394|consensus
Probab=100.00 E-value=5.5e-40 Score=240.35 Aligned_cols=178 Identities=37% Similarity=0.659 Sum_probs=165.4
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR 80 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (253)
|....+...+||+++|++|+|||||+++|.+.+|...+..|+|.++.++.+.++++.+.++||||+|+++|..+...|++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 77777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcc----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK 156 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (253)
++|-+++|||++++.||+++..|..++..+.. ...|++|+|||+|+.+.
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~--------------------------- 133 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG--------------------------- 133 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC---------------------------
Confidence 99999999999999999999999999988874 46899999999999643
Q ss_pred chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621 157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTSG 227 (253)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 227 (253)
+.+. ++...+++||+..| +||||+||+.+.||+++|..+.+..+..+..
T Consensus 134 -----------------~~r~-----VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 134 -----------------KSRQ-----VSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred -----------------ccce-----eeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccch
Confidence 2244 78889999999988 8999999999999999999999999998865
No 7
>KOG0080|consensus
Probab=100.00 E-value=2.6e-39 Score=231.46 Aligned_cols=198 Identities=42% Similarity=0.753 Sum_probs=176.6
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
.+...+||++||.+|||||||+-+|....|++....|+|+++..+.+.+++..+++-||||+|+++|+.+...|++++-+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 34567999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||++.+++|..+..|+.++.-++. +++-.++||||+|..
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke------------------------------------ 130 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE------------------------------------ 130 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch------------------------------------
Confidence 9999999999999999999999988874 789999999999975
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCC
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKP 243 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (253)
.++. +..+++..|++++++-++++||++.+||...|++++..+++-..--+.-.+...+++-..+
T Consensus 131 ----------s~R~-----V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp~l~~~~n~~~~~~i~~~p 195 (209)
T KOG0080|consen 131 ----------SERV-----VDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETPSLWEEGNSSAGLDIASDP 195 (209)
T ss_pred ----------hccc-----ccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCcchhhccCCccccccccCC
Confidence 3455 8999999999999999999999999999999999999998866655554555666666666
Q ss_pred CCC--CCCCCCC
Q psy9621 244 DRG--GMAGGCC 253 (253)
Q Consensus 244 ~~~--~~~~~c~ 253 (253)
... ...+|||
T Consensus 196 ~~~~~~~~g~~C 207 (209)
T KOG0080|consen 196 DGEASAHQGGCC 207 (209)
T ss_pred CcccccccCCcc
Confidence 655 3347798
No 8
>KOG0079|consensus
Probab=100.00 E-value=2.1e-40 Score=233.86 Aligned_cols=196 Identities=43% Similarity=0.808 Sum_probs=173.8
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
.-++..++.+++|++|+|||+|+.+|....|..+|..|+|+++..+++.+++..++++||||+|++.|+.+...++++.+
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++++|||+++.+||.++.+|++++++.+ ..+|-++||||.|.++
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~----------------------------------- 126 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPE----------------------------------- 126 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCcc-----------------------------------
Confidence 9999999999999999999999999998 6899999999999873
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCC
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKP 243 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (253)
.+. +..++++.|+...|+.+|++||++++|++..|.-|.+...+..+...+.. -+...+..++
T Consensus 127 -----------Rrv-----V~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k~r~~~~~-~r~~~~~l~~ 189 (198)
T KOG0079|consen 127 -----------RRV-----VDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAKLRESVEQ-QRADAVSLKD 189 (198)
T ss_pred -----------cee-----eehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHHHhhcHHH-HhhcceEecc
Confidence 333 77788999999999999999999999999999999999988663322222 3445556677
Q ss_pred CCCCCCCCCC
Q psy9621 244 DRGGMAGGCC 253 (253)
Q Consensus 244 ~~~~~~~~c~ 253 (253)
++|++| .||
T Consensus 190 n~~~~~-k~c 198 (198)
T KOG0079|consen 190 NSKSTK-KCC 198 (198)
T ss_pred CCCccc-cCC
Confidence 777666 676
No 9
>KOG0087|consensus
Probab=100.00 E-value=4.4e-39 Score=241.17 Aligned_cols=172 Identities=46% Similarity=0.819 Sum_probs=162.7
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
..+++.+||+++|++|||||-|+.||....|.....+|+|+++...++.++++.++.+||||+|+++|+.....|++++.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++++|||++.+.+|+.+.+|+.+++.|...++++++||||+||.
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~------------------------------------ 132 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN------------------------------------ 132 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh------------------------------------
Confidence 99999999999999999999999999999999999999999997
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +..++++.+++..+..++++||.++.||+.+|..++..+..+-.
T Consensus 133 ----------~lra-----V~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 133 ----------HLRA-----VPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred ----------hccc-----cchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHH
Confidence 3333 78889999999999999999999999999999999988876443
No 10
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=4.9e-37 Score=237.53 Aligned_cols=179 Identities=45% Similarity=0.760 Sum_probs=157.0
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
.++.+||+|+|+.|||||||+++|..+.+...+.++.+.++...++.+++..+.+++|||+|++.|..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 56789999999999999999999999989888888888888878888888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
|+|||++++.+|+.+..|++++..+. +++|++|||||.|+.
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~-------------------------------------- 123 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLA-------------------------------------- 123 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccch--------------------------------------
Confidence 99999999999999999999998776 689999999999996
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeE
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRV 237 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~ 237 (253)
..+. +..++++.+++.+++++++|||++|.||+++|.+|.+.+.... .+.|+.++.+.
T Consensus 124 --------~~~~-----v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~-~~~~~~~~~~~ 181 (189)
T cd04121 124 --------FKRQ-----VATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRH-GRPPQSPPQNC 181 (189)
T ss_pred --------hccC-----CCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CCCCCCCCccc
Confidence 2233 5667889999999999999999999999999999999887533 24444444433
No 11
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.9e-37 Score=240.90 Aligned_cols=193 Identities=35% Similarity=0.652 Sum_probs=161.2
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
+||+|+|++|||||||+++|..+.+...+.+|++.++....+.++ +..+.+.+|||+|++.|..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988899999988887778777 7789999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc----ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHA----NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
||++++++|+.+..|+..+.... ..++|+++|+||+|+.
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~------------------------------------- 123 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK------------------------------------- 123 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc-------------------------------------
Confidence 99999999999999999887643 2679999999999986
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCC--eEeecC
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPD--RVTIDK 241 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~ 241 (253)
..+. +..++..++++..+ .+++++||++|.|++++|.+|.+.+........+...+. .+....
T Consensus 124 ---------~~~~-----~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 189 (201)
T cd04107 124 ---------KRLA-----KDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNLQQAETPEDGSVIDLK 189 (201)
T ss_pred ---------cccc-----cCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhhHhhcCCCcccccccc
Confidence 2222 55667889999998 699999999999999999999999988665444444332 222333
Q ss_pred CCCCCCCCCCCC
Q psy9621 242 KPDRGGMAGGCC 253 (253)
Q Consensus 242 ~~~~~~~~~~c~ 253 (253)
....+++..+||
T Consensus 190 ~~~~~~~~~~~~ 201 (201)
T cd04107 190 QTTTKKKSKGCC 201 (201)
T ss_pred cceeccccCCCC
Confidence 344445566899
No 12
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2e-36 Score=238.80 Aligned_cols=206 Identities=26% Similarity=0.443 Sum_probs=155.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+|+|.+|||||||+++|..+.+.. +.++++.++....+ ..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998875 57888876654433 4678999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
|++++.+|+.+..|+..+.+....++|++||+||+|+..+........ +. ..
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~------------------~~-~~--------- 127 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEK------------------DA-GD--------- 127 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccc------------------cc-cc---------
Confidence 999999999999888888776557899999999999963211000000 00 00
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhC--------------CceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCC
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYG--------------VRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPD 235 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~ 235 (253)
.......+.+..+++.+++++++ ++|++|||++|.||+++|..+++.+......+.......
T Consensus 128 ----~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~ 203 (220)
T cd04126 128 ----RVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT 203 (220)
T ss_pred ----cccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 00000011267778889998876 689999999999999999999998887665554433222
Q ss_pred eEeecCCCCCCCCCCCCC
Q psy9621 236 RVTIDKKPDRGGMAGGCC 253 (253)
Q Consensus 236 ~~~~~~~~~~~~~~~~c~ 253 (253)
...+ .-++++++|++||
T Consensus 204 ~~~~-~~~~~~~~~~~~~ 220 (220)
T cd04126 204 QGTV-NLPNPKRSKSKCC 220 (220)
T ss_pred hccc-cCCCcccCCCCCC
Confidence 2222 3455777899999
No 13
>KOG0086|consensus
Probab=100.00 E-value=3.8e-37 Score=218.65 Aligned_cols=178 Identities=42% Similarity=0.758 Sum_probs=168.1
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR 80 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (253)
|-+.++++.+|++++|++|+|||+|+++|...+|.....-|+|+++....+++.++.++++||||+|+++|+...+.|++
T Consensus 1 mmsEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYR 80 (214)
T KOG0086|consen 1 MMSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYR 80 (214)
T ss_pred CcchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhc
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
++.++++|||++++++|+.+..|+..++-...+++-++++|||.|+.
T Consensus 81 GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~--------------------------------- 127 (214)
T KOG0086|consen 81 GAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD--------------------------------- 127 (214)
T ss_pred cccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC---------------------------------
Confidence 99999999999999999999999999999998999999999999998
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCC
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD 229 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~ 229 (253)
+.++ +...++.+||++..+.+.++||+||+||++.|-...+.++.+.+...
T Consensus 128 -------------~~R~-----VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GE 178 (214)
T KOG0086|consen 128 -------------PERE-----VTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGE 178 (214)
T ss_pred -------------hhhh-----hhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcC
Confidence 5566 78889999999999999999999999999999999999988776443
No 14
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=5e-36 Score=234.02 Aligned_cols=165 Identities=49% Similarity=0.908 Sum_probs=149.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+.|+++|+.|||||||+++|..+.|...+.+|++.++....+.+++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999999999999999998888889988999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
|+++++||+.+..|+..+.+....++|+++||||+|+.
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~------------------------------------------ 118 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE------------------------------------------ 118 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc------------------------------------------
Confidence 99999999999999999887766789999999999986
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHh-CCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..++ +...+++++++++ ++.+++|||++|.||+++|.+|++.+....
T Consensus 119 ----~~~~-----v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~ 166 (202)
T cd04120 119 ----TDRE-----ISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166 (202)
T ss_pred ----cccc-----cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence 2233 5666778888886 789999999999999999999999887653
No 15
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=9.7e-36 Score=233.07 Aligned_cols=196 Identities=44% Similarity=0.818 Sum_probs=162.1
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
+++.+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..++++++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 45689999999999999999999999999888899999888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
|+|||++++++|+.+..|++.+.... ..+|++||+||+|+.
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~-------------------------------------- 123 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDP-------------------------------------- 123 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccc--------------------------------------
Confidence 99999999999999999999987765 679999999999986
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCC-eEeecCCCC
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPD-RVTIDKKPD 244 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 244 (253)
+... +...+...+++..+++++++||++|.||+++|++|.+.+......+......+ ..+....+-
T Consensus 124 --------~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (199)
T cd04110 124 --------ERKV-----VETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLPK 190 (199)
T ss_pred --------cccc-----cCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhccCcccccCCccccCccch
Confidence 2222 44566778888889999999999999999999999999987655554443332 222222222
Q ss_pred CCCCCCCCC
Q psy9621 245 RGGMAGGCC 253 (253)
Q Consensus 245 ~~~~~~~c~ 253 (253)
..+++..||
T Consensus 191 ~~~~~~~~~ 199 (199)
T cd04110 191 NSKRKKRCC 199 (199)
T ss_pred hccccccCC
Confidence 223477787
No 16
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.4e-35 Score=234.87 Aligned_cols=172 Identities=46% Similarity=0.840 Sum_probs=153.9
Q ss_pred CccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcC
Q psy9621 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRG 81 (253)
Q Consensus 2 ~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 81 (253)
..+..++.+||+++|++|||||||+++|.++.+...+.++++.++....+.+.+..+.+.+|||+|++++..++..++++
T Consensus 5 ~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 84 (216)
T PLN03110 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84 (216)
T ss_pred cccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC
Confidence 34455688999999999999999999999999888888999999988888888888999999999999999999999999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621 82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 161 (253)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
++++|+|||++++.+|+.+..|+..+.++...++|+++|+||+|+.
T Consensus 85 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~---------------------------------- 130 (216)
T PLN03110 85 AVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN---------------------------------- 130 (216)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc----------------------------------
Confidence 9999999999999999999999999988876789999999999986
Q ss_pred HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
..+. +..+....++...+++++++||++|.|++++|+.|.+.+...
T Consensus 131 ------------~~~~-----~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 131 ------------HLRS-----VAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred ------------cccC-----CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2232 455667788888899999999999999999999999988663
No 17
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.8e-35 Score=230.16 Aligned_cols=190 Identities=50% Similarity=0.851 Sum_probs=159.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
+||+++|++|||||||++++..+.+.. .+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988864 5778888888777788888889999999999999998899999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
||++++.+++.+..|+..+......++|+++++||+|+.
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~----------------------------------------- 119 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS----------------------------------------- 119 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch-----------------------------------------
Confidence 999999999999999999988876789999999999986
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCCCCCCC
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDRGGM 248 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (253)
..+. +..++...+++.++++++++||++|.|++++|.+|.+.+...... .+.+..-+ .++.+...++
T Consensus 120 -----~~~~-----~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~ 186 (191)
T cd04112 120 -----GERV-----VKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE-QPDEGKFK--ISDYVTKQKK 186 (191)
T ss_pred -----hccc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc-cCCCCcEE--eccccCcccc
Confidence 2222 444567788888899999999999999999999999999877544 22222334 4444455445
Q ss_pred CCCCC
Q psy9621 249 AGGCC 253 (253)
Q Consensus 249 ~~~c~ 253 (253)
+.+||
T Consensus 187 ~~~~~ 191 (191)
T cd04112 187 ISRCC 191 (191)
T ss_pred cCCCC
Confidence 99999
No 18
>KOG0093|consensus
Probab=100.00 E-value=6.7e-36 Score=210.86 Aligned_cols=174 Identities=49% Similarity=0.884 Sum_probs=163.2
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
..++-.|++++|...+|||||+.++.+..|.+.+.+|+|+++..+++.-..+.+++++|||.|++.|+.+...+++++++
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg 96 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG 96 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence 45677899999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
+|++||+++.+||..+..|.-.|..++-.+.|+++++||+|+.
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd------------------------------------- 139 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMD------------------------------------- 139 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCc-------------------------------------
Confidence 9999999999999999999999988888899999999999997
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCC
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD 229 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~ 229 (253)
..+. +..+.+++++.++|+.+||+||+.+.||+.+|..++..+.+++.++.
T Consensus 140 ---------~eRv-----is~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl 190 (193)
T KOG0093|consen 140 ---------SERV-----ISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSESL 190 (193)
T ss_pred ---------ccee-----eeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhhhh
Confidence 4455 78889999999999999999999999999999999999999886543
No 19
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=3e-35 Score=228.79 Aligned_cols=169 Identities=34% Similarity=0.595 Sum_probs=145.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD 90 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 90 (253)
||+|+|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 6899999999999999999999998888888875553 456677788899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcc---cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 91 ITNEKSFDNILKWLRNIDEHAN---EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
++++.+|+.+..|+..+..... .++|+++|+||+|+.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~---------------------------------------- 119 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV---------------------------------------- 119 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc----------------------------------------
Confidence 9999999999999999876642 579999999999986
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCC
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPL 231 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~ 231 (253)
.... +...+..++++.++++++++||++|.|++++|.++.+.+..++....++
T Consensus 120 ------~~~~-----v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~~~~ 172 (190)
T cd04144 120 ------YERE-----VSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQGP 172 (190)
T ss_pred ------ccCc-----cCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhcccCCC
Confidence 2222 4455667888888999999999999999999999999888766655433
No 20
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4e-35 Score=225.79 Aligned_cols=176 Identities=22% Similarity=0.499 Sum_probs=148.0
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
+...+||+++|++|||||||+++|..+.+...+.||++.++. ..+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 356789999999999999999999999999999999986664 5677888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 86 MLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
|+|||++++.||+.+ ..|+..+.++. ++.|+++||||+|+.... ..+
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~----------------------------~~~--- 128 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDL----------------------------TTL--- 128 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcCh----------------------------hhH---
Confidence 999999999999997 79999998876 679999999999985210 000
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCC-HHHHHHHHHHHHH
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANIN-IEKAFIELATAIY 222 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g-i~~l~~~l~~~~~ 222 (253)
.++... ..+. +..++++++++++++ +|+||||++|.| |+++|..+++...
T Consensus 129 -~~~~~~--~~~~-----v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 129 -VELSNH--RQTP-----VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred -HHHHhc--CCCC-----CCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 000000 1122 677889999999995 999999999998 9999999998654
No 21
>KOG0088|consensus
Probab=100.00 E-value=4.2e-36 Score=214.56 Aligned_cols=197 Identities=36% Similarity=0.671 Sum_probs=171.5
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
.-..+|++++|.-=||||||+-||...+|.....+|+...|..+.+++.+....++||||+|+++|..+...|+++.+++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 45678999999999999999999999999988888888888889999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
++|||+++++||+.+..|..+++....+.+.++|||||+|+.
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE-------------------------------------- 131 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE-------------------------------------- 131 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH--------------------------------------
Confidence 999999999999999999999999999999999999999998
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC---------CCCCCCC-C
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSG---------RDPLEAP-D 235 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~---------~~~~~~~-~ 235 (253)
+.+. +..++++.+++.-|..++++||+.+.||.++|..|...+.+..+. ..|+... -
T Consensus 132 --------eeR~-----Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~ 198 (218)
T KOG0088|consen 132 --------EERQ-----VTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRS 198 (218)
T ss_pred --------Hhhh-----hhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccc
Confidence 4555 888999999999999999999999999999999999988775421 1111111 1
Q ss_pred eEeecCCCCCCCCCCCCC
Q psy9621 236 RVTIDKKPDRGGMAGGCC 253 (253)
Q Consensus 236 ~~~~~~~~~~~~~~~~c~ 253 (253)
...++..++.+.+.++||
T Consensus 199 ~~~iD~e~~a~~sg~~CC 216 (218)
T KOG0088|consen 199 IRLIDNEAEAERSGKRCC 216 (218)
T ss_pred hhccCCCcccccccCCcc
Confidence 233445556677788899
No 22
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.2e-34 Score=229.62 Aligned_cols=165 Identities=30% Similarity=0.537 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCC-eEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKG-KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
+||+++|++|||||||+++|..+.+...+.++.+.++....+.+.+ ..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999999998888887764 578999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcc---cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHAN---EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
||++++++|+.+..|+..+.+... .++|+++|+||+|+.
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~-------------------------------------- 122 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE-------------------------------------- 122 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc--------------------------------------
Confidence 999999999999999999987652 457899999999986
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. +...+..++++.++++++++||++|.|++++|++|.+.+....
T Consensus 123 --------~~~~-----v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~~ 169 (215)
T cd04109 123 --------HNRT-----VKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGVD 169 (215)
T ss_pred --------cccc-----cCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 2233 5556778899999999999999999999999999999988654
No 23
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.4e-34 Score=229.61 Aligned_cols=179 Identities=21% Similarity=0.447 Sum_probs=149.7
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
+....+||+|+|++|||||||+++|..+.|...+.||++.++. ..+.+++..+.+.+|||+|++.|..++..+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 4456789999999999999999999999999999999987775 457788899999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||++++++|+.+ ..|+..+.... ++.|+++||||+|+..... .+.
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~----------------------------~~~- 137 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLS----------------------------TLM- 137 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccc----------------------------hhh-
Confidence 9999999999999984 79999998776 5789999999999852100 000
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCC-CHHHHHHHHHHHHHhc
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANI-NIEKAFIELATAIYDK 224 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-gi~~l~~~l~~~~~~~ 224 (253)
++.. ...+. +..++++++|+++++ +|++|||++|. ||+++|..+++.+.++
T Consensus 138 ---~l~~--~~~~~-----Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 138 ---ELSN--QKQAP-----ISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred ---hhcc--ccCCc-----CCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 0000 01122 677789999999998 69999999998 8999999999988764
No 24
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=6.6e-35 Score=223.27 Aligned_cols=169 Identities=27% Similarity=0.561 Sum_probs=144.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||+.+|..+.|...+.||++..+. ..+.+++..+.+.+|||+|+++|..++..++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 79999999999999999999999999999999986664 45677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|+++++||+.+ ..|+..+.+.. .++|++|||||+|+..++..
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~------------------------------------ 123 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQY------------------------------------ 123 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhh------------------------------------
Confidence 99999999998 68999998775 57999999999999632110
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
.........+..++++++++.+++ +++||||++|.||+++|..+.+.+
T Consensus 124 -----~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 124 -----LADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred -----hhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 000000111667788999999997 699999999999999999999876
No 25
>KOG0091|consensus
Probab=100.00 E-value=1e-35 Score=213.67 Aligned_cols=197 Identities=37% Similarity=0.676 Sum_probs=167.6
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
..+.++++|||++-+|||+|++.|..+++++-.+||+|+|+....+.+. +..+++++|||+|+++|+.....|+++.-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 3567899999999999999999999999999999999999988877664 778999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
+++|||+++++||+.+..|+.+-.-+.. ..+-+++||.|+|+.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~----------------------------------- 129 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ----------------------------------- 129 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh-----------------------------------
Confidence 9999999999999999999998766653 345678899999998
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCC--------CCCC
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDP--------LEAP 234 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~--------~~~~ 234 (253)
..++ +..++++.+++.+|+.++||||++|.||+++|.-|.+.+........- ..+.
T Consensus 130 -----------SqRq-----Vt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik~edgw~gvKSs 193 (213)
T KOG0091|consen 130 -----------SQRQ-----VTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSS 193 (213)
T ss_pred -----------hhcc-----ccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhcCceeeeecccccccc
Confidence 4555 889999999999999999999999999999999999999887665332 1123
Q ss_pred CeEeecCCCCC-CCCCCCCC
Q psy9621 235 DRVTIDKKPDR-GGMAGGCC 253 (253)
Q Consensus 235 ~~~~~~~~~~~-~~~~~~c~ 253 (253)
.+-.+...+.. +.+|++||
T Consensus 194 rpn~i~~s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 194 RPNQIPRSPSRKQPSKPCQC 213 (213)
T ss_pred CCCcCCCcccccCCCCCCCC
Confidence 34444444444 45567777
No 26
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.2e-34 Score=220.76 Aligned_cols=164 Identities=41% Similarity=0.799 Sum_probs=148.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+++|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..++++++++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999999888888998888877788888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
||++++.+|+.+..|+..+......+.|+++++||+|+.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~----------------------------------------- 120 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE----------------------------------------- 120 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----------------------------------------
Confidence 999999999999999999887766789999999999996
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..+. +..++..++++..+++++++||++|.|++++|..+.+.+.+
T Consensus 121 -----~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 121 -----AQRD-----VTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred -----cccC-----cCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 2232 45567788898889999999999999999999999988754
No 27
>KOG0095|consensus
Probab=100.00 E-value=1.9e-35 Score=209.30 Aligned_cols=172 Identities=48% Similarity=0.821 Sum_probs=160.2
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
-+.+.+||+++|.+|+|||+|+++|..+-|++....|+|+++..+++.+++..+++++|||+|+++|+.....|++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
+|+|||++-..+|..+.+|+.+|.++....+..++||||+|+.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~------------------------------------- 125 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA------------------------------------- 125 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh-------------------------------------
Confidence 9999999999999999999999999998899999999999998
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSG 227 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 227 (253)
+.++ ++...+++|++...+-+.++||++..|++.||..+.-.+......
T Consensus 126 ---------drre-----vp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ar~ 174 (213)
T KOG0095|consen 126 ---------DRRE-----VPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISEARQ 174 (213)
T ss_pred ---------hhhh-----hhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHh
Confidence 5555 778889999999999999999999999999999988777654433
No 28
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.9e-34 Score=219.75 Aligned_cols=166 Identities=70% Similarity=1.168 Sum_probs=149.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
++.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 46899999999999999999999999999999999998888778888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
+|||++++.+|..+..|+..+.++...++|+++++||+|+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~--------------------------------------- 121 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME--------------------------------------- 121 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc---------------------------------------
Confidence 99999999999999999999988766789999999999996
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..+. +..++..++++.++++++++||++|.|++++|.++.+.+..
T Consensus 122 -------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 122 -------EKRV-----VSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred -------cccC-----CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 2222 44456778888889999999999999999999999998865
No 29
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.6e-34 Score=221.89 Aligned_cols=173 Identities=22% Similarity=0.496 Sum_probs=145.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
++||+++|++|||||||+++|..+.+...+.||++.++. ..+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999999999999986664 5677888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||+++++||+.+ ..|+..+.++. +++|+++||||+|+..+ .... .+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~----------------------------~~~~----~~ 126 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTD----------------------------LSTL----ME 126 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcC----------------------------hhHH----HH
Confidence 999999999996 79999998876 68999999999998521 0000 00
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCC-HHHHHHHHHHHHH
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANIN-IEKAFIELATAIY 222 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g-i~~l~~~l~~~~~ 222 (253)
+... ..+. +..++++++++++++ ++++|||++|+| |+++|..+++..+
T Consensus 127 ~~~~--~~~~-----v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 127 LSHQ--RQAP-----VSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred HHhc--CCCC-----CCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 0000 1122 667789999999996 899999999995 9999999999654
No 30
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.9e-34 Score=221.63 Aligned_cols=165 Identities=47% Similarity=0.793 Sum_probs=148.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998878899998888788888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
|++++.+|..+..|+..+......++|+++++||+|+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~------------------------------------------ 118 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV------------------------------------------ 118 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc------------------------------------------
Confidence 99999999999999999988776679999999999986
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
+... +.......+++..+++++++||++|.|++++|.+|.+.+..+.
T Consensus 119 ----~~~~-----v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~ 165 (188)
T cd04125 119 ----NNKV-----VDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRL 165 (188)
T ss_pred ----cccc-----CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 2232 4455667888888899999999999999999999999998754
No 31
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.8e-34 Score=224.28 Aligned_cols=170 Identities=39% Similarity=0.760 Sum_probs=149.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
+.+||+|+|++|||||||+++|.++.+...+.++++.++....+.+. +..+.+.+|||+|++.+..++..+++++|++|
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 35899999999999999999999999988888999988887777764 56789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.+|+.+..|+..+..... ..+|++|++||+|+.
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~-------------------------------------- 122 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE-------------------------------------- 122 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc--------------------------------------
Confidence 99999999999999999999987653 467899999999986
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR 228 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 228 (253)
.... +..++..++++.++++++++||++|.|++++|+.|.+.+.+++...
T Consensus 123 --------~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~ 172 (211)
T cd04111 123 --------SQRQ-----VTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRG 172 (211)
T ss_pred --------cccc-----cCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 2222 5566778899999999999999999999999999999888775544
No 32
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=7.9e-34 Score=221.38 Aligned_cols=192 Identities=29% Similarity=0.529 Sum_probs=156.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
+||+|+|++|||||||+++|..+.+.. .+.++++.++....+.+++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988875 5788888888777888888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
||++++.+++.+..|+..+.... .++|+++|+||.|+.....
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~------------------------------------- 122 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDR------------------------------------- 122 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEccccccccc-------------------------------------
Confidence 99999999999999999987754 5799999999999852100
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCCCCCCC
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDRGGM 248 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (253)
.... +...+..+++..++++++++||++|.|++++|+.|.+.+.++...+.... ..+++..+++. .
T Consensus 123 -----~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~--~ 188 (193)
T cd04118 123 -----SLRQ-----VDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQMNTE--KGVDLGQKKNS--Y 188 (193)
T ss_pred -----ccCc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcccccCCC--CccccCCcCCC--C
Confidence 0011 34456677888888999999999999999999999999987665442222 33334444443 4
Q ss_pred CCCCC
Q psy9621 249 AGGCC 253 (253)
Q Consensus 249 ~~~c~ 253 (253)
.++||
T Consensus 189 ~~~~~ 193 (193)
T cd04118 189 FYSCC 193 (193)
T ss_pred CCCCC
Confidence 88898
No 33
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=4.5e-34 Score=216.39 Aligned_cols=160 Identities=53% Similarity=0.980 Sum_probs=145.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||++++..+.+.+.+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999999888999998888788888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
|++++.+|+.+..|+..+......++|+++++||.|+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~------------------------------------------ 118 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE------------------------------------------ 118 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc------------------------------------------
Confidence 99999999999999999988765689999999999986
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
..+. +..++...+++.++++++++||++|.|++++|.+|.+.
T Consensus 119 ----~~~~-----v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 119 ----QKRQ-----VGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ----cccC-----CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 2232 55677888999899999999999999999999999865
No 34
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=7.2e-34 Score=216.15 Aligned_cols=163 Identities=50% Similarity=0.892 Sum_probs=146.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888999998888777777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
|++++.+++.+..|+..+......+.|+++++||+|+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~------------------------------------------ 119 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME------------------------------------------ 119 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC------------------------------------------
Confidence 99999999999999999987765689999999999986
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
+.+. +..+...++++.++++++++||++|.|++++|+.+.+.+.+
T Consensus 120 ----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 120 ----DERV-----VSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred ----cccc-----cCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2222 44456677888888999999999999999999999987765
No 35
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=7.5e-34 Score=220.95 Aligned_cols=174 Identities=26% Similarity=0.572 Sum_probs=144.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+++|+.|||||||+++|..+.|...+.||++.++. ..+.+++..+.+.+|||+|+++|..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 589999999999999999999999998889999986654 4466788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||++++.||+.+. .|+..+.+.. .++|++|||||.|+..++.. ...
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~--------------------------------~~~ 128 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADT--------------------------------LKK 128 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhh--------------------------------HHH
Confidence 9999999999997 6988887765 68999999999999632110 000
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
+.+. .... +..+++++++++++ ++++++||++|.||+++|..+++.+..
T Consensus 129 ~~~~--~~~~-----v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 129 LKEQ--GQAP-----ITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred Hhhc--cCCC-----CCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 0000 0111 45567899999998 699999999999999999999998854
No 36
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=8.3e-34 Score=220.46 Aligned_cols=166 Identities=31% Similarity=0.543 Sum_probs=145.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
..+||+++|++|||||||++++..+.+...+.++.+.++ ...+.+++..+.+.+|||+|+++|..++..++++++++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 468999999999999999999999999888888887666 4567788888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|||++++++|+.+..|+..+.... ..++|+++++||+|+.
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~--------------------------------------- 123 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD--------------------------------------- 123 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc---------------------------------------
Confidence 999999999999999999987764 3589999999999985
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. +...+..++++.++++++++||++|.|++++|.+|++.+....
T Consensus 124 -------~~~~-----i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~ 170 (189)
T PTZ00369 124 -------SERQ-----VSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYL 170 (189)
T ss_pred -------cccc-----cCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 2222 4445667788888899999999999999999999999887654
No 37
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=8.8e-34 Score=218.65 Aligned_cols=167 Identities=44% Similarity=0.843 Sum_probs=147.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC----------CeEEEEEEEeCCCcccccccch
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK----------GKKIKLQIWDTAGQERFHTITT 76 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~ 76 (253)
++.+||+++|++|||||||++++..+.+...+.++++.++....+.+. +..+.+.+|||||++++..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 567999999999999999999999999999999999988876666554 3568899999999999999999
Q ss_pred hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621 77 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE 155 (253)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (253)
.+++++|++|+|||++++++|..+..|+..+.... ..+.|+++|+||+|+.
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~---------------------------- 133 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE---------------------------- 133 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch----------------------------
Confidence 99999999999999999999999999999987764 2578999999999986
Q ss_pred cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
..+. +..++..+++++.+++++++||++|.|++++|+.|.+.+.++
T Consensus 134 ------------------~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 134 ------------------DQRQ-----VSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred ------------------hcCc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 2222 455677889999999999999999999999999999888654
No 38
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1e-33 Score=216.60 Aligned_cols=165 Identities=30% Similarity=0.509 Sum_probs=145.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+|+|++|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+|||+|+++|..++..+++++|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 479999999999999999999999998888899875553 4567788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||++++.+|..+..|...+.+.. ..++|+++|+||+|+.
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~---------------------------------------- 120 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE---------------------------------------- 120 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh----------------------------------------
Confidence 99999999999999988887653 3679999999999986
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. +..++.+++++.+++++++|||++|.||+++|++|++.+.+++
T Consensus 121 ------~~~~-----v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 121 ------SQRQ-----VTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKE 167 (172)
T ss_pred ------hcCc-----cCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 2222 5566788899999999999999999999999999999887643
No 39
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.1e-33 Score=218.21 Aligned_cols=169 Identities=23% Similarity=0.515 Sum_probs=145.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|+.|||||||+++|..+.+...+.||++.++....+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999989999999988888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
|++++.+|+.+..|+..+.+......| ++|+||+|+..+...
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~------------------------------------- 122 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPP------------------------------------- 122 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccc-------------------------------------
Confidence 999999999999999999887655677 578999998521000
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.... ...++.+++++.++++++++||++|.|++++|.++.+.+....
T Consensus 123 ----~~~~-----~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 123 ----EEQE-----EITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred ----hhhh-----hhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 0000 1235677888888999999999999999999999999887633
No 40
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2.5e-33 Score=221.09 Aligned_cols=170 Identities=47% Similarity=0.862 Sum_probs=152.7
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
+++.+||+|+|++|||||||+++|....+...+.++++.++....+.+.+..+.+.+|||+|++.+..++..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45789999999999999999999999988888889999888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
|+|||++++.+|+.+..|+..+.......+|+++++||+|+.
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~-------------------------------------- 124 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA-------------------------------------- 124 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc--------------------------------------
Confidence 999999999999999999999877766789999999999986
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +...+.+++++.++++++++||+++.|++++|.++++.+.++..
T Consensus 125 --------~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 125 --------HRRA-----VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred --------cccC-----CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 2222 55667888999999999999999999999999999999887654
No 41
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.8e-33 Score=214.19 Aligned_cols=163 Identities=56% Similarity=0.989 Sum_probs=147.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+++|++|||||||++++.++.+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999999888889998888888888888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
||++++++|..+..|+..+......+.|+++++||.|+.
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~----------------------------------------- 120 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT----------------------------------------- 120 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc-----------------------------------------
Confidence 999999999999999999988765679999999999986
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.... +..++...+++.++++++++||++|.|++++|..|.+.+.
T Consensus 121 -----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 121 -----DKRV-----VDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred -----cccC-----CCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 2222 4556678888888999999999999999999999998775
No 42
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.2e-33 Score=221.66 Aligned_cols=177 Identities=20% Similarity=0.486 Sum_probs=145.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+|+|++|||||||+++|..+.|+..+.||++.++. ..+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999999999999987765 5677888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||++++++|+.+. .|...+.... .++|++|||||+|+..+. .... +
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~----------------------------~~~~----~ 126 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDL----------------------------ATLR----E 126 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccch----------------------------hhhh----h
Confidence 9999999999994 6887776654 689999999999986210 0000 0
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCC-HHHHHHHHHHHHHhccC
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANIN-IEKAFIELATAIYDKTS 226 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g-i~~l~~~l~~~~~~~~~ 226 (253)
+... .... +..++++.++++++ ++|+||||+++.| |+++|..+++....+..
T Consensus 127 ~~~~--~~~p-----Is~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 127 LSKQ--RLIP-----VTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred hhhc--cCCc-----cCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccC
Confidence 0000 0111 66778999999999 4999999999984 99999999998776544
No 43
>KOG0083|consensus
Probab=100.00 E-value=1.9e-35 Score=205.39 Aligned_cols=189 Identities=46% Similarity=0.769 Sum_probs=164.6
Q ss_pred EEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeC
Q psy9621 13 LLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDI 91 (253)
Q Consensus 13 ~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 91 (253)
.++|++++|||+|+-||..+.|- ..+.+|+|++|.++.+...+..+++++|||.|+++|++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 37899999999999999988874 56789999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhh
Q psy9621 92 TNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 171 (253)
Q Consensus 92 ~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (253)
.+..||++++.|+.+|..+....+.+.++|||+|++
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a-------------------------------------------- 116 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA-------------------------------------------- 116 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc--------------------------------------------
Confidence 999999999999999999998899999999999997
Q ss_pred cCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCCCCCCCCCC
Q psy9621 172 ANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDRGGMAGG 251 (253)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (253)
..+. +..++++.+++.+++|++++||++|.|+|.+|..|.+.+.... ...|++..-+.++.-+...++.-+-
T Consensus 117 --~er~-----v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~-~~~~~~~~~~~~~~v~~~~k~eia~ 188 (192)
T KOG0083|consen 117 --HERA-----VKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLK-MGAPPEGEFADHDSVADEGKGEIAR 188 (192)
T ss_pred --hhhc-----cccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhc-cCCCCCCccccchhHHhcCCCcccc
Confidence 3333 7788999999999999999999999999999999999887644 3444444444454444455555677
Q ss_pred CC
Q psy9621 252 CC 253 (253)
Q Consensus 252 c~ 253 (253)
||
T Consensus 189 cc 190 (192)
T KOG0083|consen 189 CC 190 (192)
T ss_pred cc
Confidence 88
No 44
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.7e-33 Score=218.42 Aligned_cols=170 Identities=28% Similarity=0.533 Sum_probs=143.2
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
+||+|+|++|||||||+++|..+.+...+.++.+.++.. .+... +..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999988888888777654 34444 6778999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||++++.+|+.+. .|+..+.... .++|+++++||.|+.....
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~------------------------------------ 122 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKN------------------------------------ 122 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCcc------------------------------------
Confidence 9999999999996 5888876654 6899999999999862110
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTSGR 228 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 228 (253)
.... +...+.+++++.++. +++++||++|.|++++|..+.+.+.......
T Consensus 123 ------~~~~-----v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 123 ------LDRK-----VTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGKA 173 (187)
T ss_pred ------ccCC-----cCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence 0111 556678889999987 9999999999999999999999998766443
No 45
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=3.1e-33 Score=213.28 Aligned_cols=167 Identities=48% Similarity=0.893 Sum_probs=149.8
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
+++.+||+|+|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++
T Consensus 1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 46789999999999999999999999998888888988888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
++|||++++.++..+..|+..+..+..+++|+++++||.|+.
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~-------------------------------------- 122 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE-------------------------------------- 122 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc--------------------------------------
Confidence 999999999999999999999988766789999999999986
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.... +..++.+.+++..+++++++||+++.|++++|..+.+.+.+
T Consensus 123 --------~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 123 --------SRRE-----VSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred --------cccC-----CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 2222 45566778888889999999999999999999999988764
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=3e-33 Score=221.71 Aligned_cols=167 Identities=29% Similarity=0.497 Sum_probs=146.9
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
+....+||+++|++|||||||++++..+.+...+.++++.++....+..++..+.+.+|||+|++.|..++..+++++++
T Consensus 9 ~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred cCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 34778999999999999999999999999999999999998887777777788999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
+|+|||++++.+|+.+..|+..+.... .++|+++||||+|+..
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~------------------------------------ 131 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN------------------------------------ 131 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh------------------------------------
Confidence 999999999999999999999998775 6899999999999851
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.. +..... ++++..+++++++||++|.|++++|.+|.+.+.+..
T Consensus 132 -----------~~-----v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~~ 175 (219)
T PLN03071 132 -----------RQ-----VKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175 (219)
T ss_pred -----------cc-----CCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcCc
Confidence 11 222223 667777899999999999999999999999987654
No 47
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=2.7e-33 Score=212.26 Aligned_cols=161 Identities=39% Similarity=0.750 Sum_probs=150.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD 90 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 90 (253)
||+|+|++|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.|..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhh
Q psy9621 91 ITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE 170 (253)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
+++++||+.+..|+..+......+.|++++|||.|+.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~------------------------------------------- 117 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS------------------------------------------- 117 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG-------------------------------------------
T ss_pred ccccccccccccccccccccccccccceeeecccccc-------------------------------------------
Confidence 9999999999999999999986679999999999987
Q ss_pred hcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 171 HANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
..+. +..+++++++++++++++++||+++.||.++|..+++.+.
T Consensus 118 ---~~~~-----v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 118 ---DERE-----VSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp ---GGSS-----SCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred ---cccc-----chhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 2233 6777899999999999999999999999999999999875
No 48
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=3.5e-33 Score=214.19 Aligned_cols=172 Identities=24% Similarity=0.502 Sum_probs=142.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
++||+++|++|||||||+++|..+.|...+.|+++.++. ..+.+.+..+.+.+|||+|+++|..++..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 479999999999999999999999998888999986664 4566778889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||++++++|+.+. .|+..+.... .++|+++++||+|+..... ..+.
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~--------------------------------~~~~ 126 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPS--------------------------------TIEK 126 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChh--------------------------------hHHH
Confidence 9999999999997 6998887765 5799999999999862110 0111
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
+... ..+. +..+++++++++.+ +.++++||++|.|++++|+.+++..
T Consensus 127 l~~~--~~~~-----v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 127 LAKN--KQKP-----ITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred hhhc--cCCC-----cCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 1100 1122 66678889999887 7999999999999999999998753
No 49
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=4.5e-33 Score=211.93 Aligned_cols=162 Identities=27% Similarity=0.653 Sum_probs=145.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+|+|++|||||||++++.++.+...+.++++.++....+.+++..+.+++|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 59999999999999999999999999999999999988888888888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcc-----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 90 DITNEKSFDNILKWLRNIDEHAN-----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
|++++.+++.+..|+..+.+... .++|+++++||+|+.
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------------------------------------- 123 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT------------------------------------- 123 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc-------------------------------------
Confidence 99999999999999999988753 479999999999985
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.... ....+.+.+++..+++++++||++|.|++++|+.|.+.+.
T Consensus 124 ---------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 124 ---------KHRA-----VSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred ---------cccc-----cCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 2222 4455667788888899999999999999999999998875
No 50
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=6.4e-33 Score=210.83 Aligned_cols=164 Identities=46% Similarity=0.845 Sum_probs=146.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
++.+||+++|++|||||||++++.++.+...+.|+.+.++....+...+..+.+.+||+||++.+..++..+++.++++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 1 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 35689999999999999999999999998888899998888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
+|||++++.++..+..|+..+......++|+++|+||.|+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~--------------------------------------- 121 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR--------------------------------------- 121 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc---------------------------------------
Confidence 99999999999999999999988876679999999999986
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
..+. +..++...++...+++++++||++|.|++++|+.|...+
T Consensus 122 -------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 122 -------HLRA-----VPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred -------cccc-----CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 2222 445567788888889999999999999999999998765
No 51
>KOG0081|consensus
Probab=100.00 E-value=5.7e-35 Score=208.87 Aligned_cols=175 Identities=43% Similarity=0.803 Sum_probs=158.5
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC---------CeEEEEEEEeCCCcccc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK---------GKKIKLQIWDTAGQERF 71 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~ 71 (253)
|..-.+++.||.+.+|++||||||++.++..++|...+.+|+|+++..+.+.++ +..+.+++|||+|+++|
T Consensus 1 m~~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF 80 (219)
T KOG0081|consen 1 MGDGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF 80 (219)
T ss_pred CCCccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHH
Confidence 556678999999999999999999999999999999999999999998887663 23578999999999999
Q ss_pred cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEE
Q psy9621 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVY 150 (253)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (253)
+.+...|++.+-+++++||+++..||-+++.|+.++.-|.- .+.-++++|||.|+.
T Consensus 81 RSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~----------------------- 137 (219)
T KOG0081|consen 81 RSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLE----------------------- 137 (219)
T ss_pred HHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchh-----------------------
Confidence 99999999999999999999999999999999999877642 667899999999998
Q ss_pred eccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 151 DITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +..+++.+++.++|+|||++||-+|.||+++.+.|...++++++
T Consensus 138 -----------------------~~R~-----Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 138 -----------------------DQRV-----VSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred -----------------------hhhh-----hhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHH
Confidence 4455 88889999999999999999999999999999999888877664
No 52
>KOG0097|consensus
Probab=100.00 E-value=3.3e-33 Score=196.33 Aligned_cols=195 Identities=37% Similarity=0.745 Sum_probs=172.2
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
.+.+.+|-+++|+-|+|||+|++.|...+|...-.-++|+++....+.+.+..+++++|||.|+++|+...+.|++++.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 45678999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
+++|||++.+.++..+..|+...+....++..+++++||.|+.
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle------------------------------------- 129 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE------------------------------------- 129 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh-------------------------------------
Confidence 9999999999999999999999988888899999999999998
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCC------------CCC
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD------------PLE 232 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~------------~~~ 232 (253)
..+. +..++..+|+++.|+.++++||++|.|++++|-+..+.+.++.+... .+.
T Consensus 130 ---------~qrd-----v~yeeak~faeengl~fle~saktg~nvedafle~akkiyqniqdgsldlnaaesgvq~k~~ 195 (215)
T KOG0097|consen 130 ---------SQRD-----VTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDGSLDLNAAESGVQHKPS 195 (215)
T ss_pred ---------hccc-----CcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcCcccccchhccCcCCCC
Confidence 4455 78889999999999999999999999999999999999988766332 233
Q ss_pred CCCeEeecCCCCCCCCCCCC
Q psy9621 233 APDRVTIDKKPDRGGMAGGC 252 (253)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~c 252 (253)
.|.+-....+++.+ |-+|
T Consensus 196 ~p~~~~l~se~~~~--kd~c 213 (215)
T KOG0097|consen 196 QPSRTSLSSEATGA--KDQC 213 (215)
T ss_pred CCCccccccCCCCc--cccC
Confidence 34555555556666 4445
No 53
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.2e-32 Score=213.90 Aligned_cols=173 Identities=28% Similarity=0.488 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
.||+|+|++|||||||+++|..+.+...+.|+++.++. ..+.+++..+.+.+|||+|++.|..++..++++++++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998888899876654 45566777889999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|++++++|+.+. .|+..+.... .++|+++|+||+|+..++..+. .+
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~--------------------------------~~ 126 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERD--------------------------------DL 126 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHH--------------------------------HH
Confidence 999999999986 6999988765 5899999999999963321100 00
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
... .... +...++.++++..+ +++++|||++|.|++++|.+|.+.+..
T Consensus 127 ~~~--~~~~-----v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 127 QRY--GKHT-----ISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred hhc--cCCC-----CCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 000 1111 44556778888877 799999999999999999999998873
No 54
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=8.6e-33 Score=210.22 Aligned_cols=163 Identities=46% Similarity=0.818 Sum_probs=144.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
++.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999999988888889888888788888888889999999999999998999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
+|||++++.+++.+..|+..+..+...++|+++|+||+|+.
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~--------------------------------------- 121 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE--------------------------------------- 121 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc---------------------------------------
Confidence 99999999999999999999988766789999999999986
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHH
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
..+. .......++++..+. .++++||++|.|++++|..|.+.
T Consensus 122 -------~~~~-----~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 122 -------EQRE-----VLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred -------cccc-----cCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 2222 445567788888875 78999999999999999999875
No 55
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.7e-32 Score=207.68 Aligned_cols=160 Identities=30% Similarity=0.599 Sum_probs=141.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998888888999998888777777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
|++++.+++.+..|+..+.... .++|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~piiiv~nK~Dl~~----------------------------------------- 118 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC-GNIPIVLCGNKVDIKD----------------------------------------- 118 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhccc-----------------------------------------
Confidence 9999999999999999998876 4899999999999851
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.. . .....++++..+++++++||++|.|++++|++|.+.+..
T Consensus 119 -----~~------~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 119 -----RK------V-KAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred -----cc------C-CHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 11 1 123445667777899999999999999999999998864
No 56
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.6e-32 Score=208.07 Aligned_cols=160 Identities=33% Similarity=0.615 Sum_probs=138.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||+++|..++..++++++++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988888888876 444566777888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|++++.+++.+..|+..+..... .++|+++++||+|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----------------------------------------- 119 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE----------------------------------------- 119 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----------------------------------------
Confidence 99999999999999999877643 579999999999986
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
..+. +...+...+++.++++++++||++|.|++++|++|.+.+
T Consensus 120 -----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 120 -----DERV-----VSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred -----ccce-----ecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 2222 444556777888889999999999999999999998754
No 57
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=2.4e-32 Score=208.70 Aligned_cols=164 Identities=33% Similarity=0.660 Sum_probs=143.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD 90 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 90 (253)
||+++|++|||||||+++|..+.+...+.|+.+.++....+.+++..+.+++|||||+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999999988887788888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 91 ITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
++++.++..+..|+..+.+.. ....|+++|+||+|+..
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~----------------------------------------- 120 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS----------------------------------------- 120 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc-----------------------------------------
Confidence 999999999999999986653 34578999999999852
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
... ......+..+++++++.+++++||++|.|++++|+.|.+.+.+
T Consensus 121 -----~~~---~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 121 -----PAQ---YALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred -----ccc---ccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 111 0023445677888888999999999999999999999998864
No 58
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.7e-32 Score=207.72 Aligned_cols=160 Identities=44% Similarity=0.797 Sum_probs=144.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+|+|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.|..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 59999999999999999999999998888889888888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
|++++.++..+..|+..+......++|+++++||.|+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~------------------------------------------ 118 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA------------------------------------------ 118 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc------------------------------------------
Confidence 99999999999999999887777889999999999986
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
..+. +...+...+++..+++++++||+++.|++++|+++.+.
T Consensus 119 ----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 119 ----DQRE-----VTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ----hhcc-----CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 2222 55567788888889999999999999999999999875
No 59
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.5e-32 Score=207.41 Aligned_cols=162 Identities=33% Similarity=0.617 Sum_probs=140.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+++|++|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+|||||++.|..++..+++++|++|+|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 369999999999999999999998888888888875553 5677788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||++++.+|+.+..|+..+.... ..++|+++++||+|+.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~---------------------------------------- 119 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE---------------------------------------- 119 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch----------------------------------------
Confidence 99999999999999999987754 3679999999999986
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.... +......++++.++++++++||++|.|++++|.++.+.+.
T Consensus 120 ------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 120 ------DERV-----VGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred ------hccE-----EcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 2222 3444567788888999999999999999999999987654
No 60
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.3e-32 Score=207.11 Aligned_cols=159 Identities=31% Similarity=0.633 Sum_probs=141.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC--CeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK--GKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
+||+++|++|+|||||++++..+.+...+.++.+.++....+.+. +..+.+++|||||+++|..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999988889999988877777776 778899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
|||+++++++..+..|++.+.... .++|+++++||+|+.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~---------------------------------------- 119 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLL---------------------------------------- 119 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcc----------------------------------------
Confidence 999999999999999999987655 689999999999986
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.... +..++..++++.++++++++||++|.|++++|++|...
T Consensus 120 ------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 120 ------DQAV-----ITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred ------cccC-----CCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 2222 45567788899999999999999999999999998753
No 61
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=5.8e-32 Score=204.83 Aligned_cols=160 Identities=29% Similarity=0.511 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||++++..+.+.+.+.++.+.++......+++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998887888777777667777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
|++++.++..+..|+..+.+.. .++|+++++||+|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~------------------------------------------ 117 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLD------------------------------------------ 117 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCc------------------------------------------
Confidence 9999999999999999997654 579999999999974
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
.. . ..+..++++.++++++++||++|.|++++|+.+.+.+.+.
T Consensus 118 ----~~-------~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 118 ----PS-------V-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred ----hh-------H-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 11 1 1234466777789999999999999999999999887764
No 62
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=211.92 Aligned_cols=171 Identities=47% Similarity=0.816 Sum_probs=145.0
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
.+....+||+|+|++|||||||+++|..+.+. .+.++.+.++....+.+++..+.+.+|||||++.|..++..+++.+|
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 45567889999999999999999999988764 55788888887777888888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHH-HHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621 84 GIMLVYDITNEKSFDNILK-WLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 161 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
++|+|||++++++|+.+.. |...+..+. ..++|+++|+||+|+.
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~---------------------------------- 133 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE---------------------------------- 133 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----------------------------------
Confidence 9999999999999999975 666665443 2568999999999986
Q ss_pred HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +..++...+++.++++++++||+++.|++++|+.|...+.....
T Consensus 134 ------------~~~~-----i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~~ 181 (211)
T PLN03118 134 ------------SERD-----VSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPS 181 (211)
T ss_pred ------------ccCc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 2222 44456677888888999999999999999999999999977654
No 63
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=4.1e-32 Score=208.11 Aligned_cols=170 Identities=27% Similarity=0.524 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+|+|++|||||||+.++..+.+...+.|+.+. .....+.+++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999999998888898864 33445667888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|++++++|..+. .|+..+.... .++|+++|+||+|+...+. ..+.+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~--------------------------------~~~~~ 127 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKD--------------------------------TIEKL 127 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChh--------------------------------hHHHH
Confidence 999999999996 6988887665 5899999999999852110 00000
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHH
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
... ..+. +...++.+++++++ +++++|||++|.|++++|+.+.+.
T Consensus 128 ~~~--~~~~-----v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 128 KEK--KLTP-----ITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hhc--cCCC-----CCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 000 1122 67788899999998 599999999999999999999864
No 64
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=5.3e-32 Score=205.36 Aligned_cols=161 Identities=30% Similarity=0.558 Sum_probs=139.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+++|.+|||||||++++..+.+...+.++.+ ++....+.+++..+.+++|||+|++.|..++..+++++|++|+|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999999888888875 45556777788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||++++.+|..+..|+..+.+... .++|+++++||+|+.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~---------------------------------------- 119 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE---------------------------------------- 119 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch----------------------------------------
Confidence 999999999999999999877642 689999999999986
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
.... +...+...+++.++++++++||++|.|++++|.++.+.+
T Consensus 120 ------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 120 ------SERE-----VSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred ------hcCc-----cCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 2121 344456777888889999999999999999999998754
No 65
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=6.4e-32 Score=206.37 Aligned_cols=163 Identities=36% Similarity=0.668 Sum_probs=144.0
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
.+..+||+++|++|||||||+++|.++.+.+.+.++.+.++....+.+++..+.+.+||+||++++..++..+++++|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34679999999999999999999999999888888988888777888888999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcc----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 161 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
|+|||++++++++.+..|+..+..... .++|+++++||+|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---------------------------------- 127 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP---------------------------------- 127 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc----------------------------------
Confidence 999999999999999999998876542 568999999999984
Q ss_pred HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHH
Q psy9621 162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.+. +..++.+++++.++ .+++++||++|.|++++|+.+++.
T Consensus 128 -------------~~~-----~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 128 -------------ERQ-----VSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred -------------ccc-----cCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 111 44566788888888 589999999999999999999875
No 66
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=9.5e-32 Score=209.61 Aligned_cols=156 Identities=26% Similarity=0.553 Sum_probs=139.1
Q ss_pred EcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCCh
Q psy9621 15 IGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNE 94 (253)
Q Consensus 15 vG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 94 (253)
+|++|||||||+++|..+.+...+.+|+|.++....+.++++.+.+.+|||+|++.|..++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888899999999888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCC
Q psy9621 95 KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE 174 (253)
Q Consensus 95 ~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (253)
.+|+.+..|+..+.+.. .++|+++||||+|+. .
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~----------------------------------------------~ 113 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVK----------------------------------------------D 113 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccc----------------------------------------------c
Confidence 99999999999998876 689999999999985 1
Q ss_pred CchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 175 DPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
+. +.. ....+++..++++++|||++|.||+++|.+|++.+...
T Consensus 114 -~~-----v~~-~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 114 -RK-----VKA-KSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred -cc-----CCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 11 112 22356777889999999999999999999999988764
No 67
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.1e-31 Score=203.58 Aligned_cols=163 Identities=55% Similarity=0.934 Sum_probs=145.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 59999999999999999999999888888889888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
|++++.+++.+..|++.+..+...++|+++++||+|+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~------------------------------------------ 118 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE------------------------------------------ 118 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc------------------------------------------
Confidence 99999999999999999988876789999999999986
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.... ...+..+++++..+++++++||++|.|++++|+.|.+.+.+
T Consensus 119 ----~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 119 ----DQRQ-----VSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred ----cccC-----CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 2222 34456777888889999999999999999999999988754
No 68
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.2e-31 Score=203.95 Aligned_cols=159 Identities=29% Similarity=0.501 Sum_probs=136.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+..+...+.+.+|||+|++.|..++..+++.++++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999888888877555 344556677889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcc---cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 90 DITNEKSFDNILKWLRNIDEHAN---EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|++++.+++.+..|+..+..... .++|+++|+||+|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~--------------------------------------- 121 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES--------------------------------------- 121 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc---------------------------------------
Confidence 99999999999999888776542 579999999999986
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
..++ +...+...++..++++++++||++|.|++++|++|..+
T Consensus 122 -------~~~~-----v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 122 -------HKRE-----VSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred -------ccCe-----ecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 2222 44556677888888999999999999999999998753
No 69
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.1e-31 Score=207.89 Aligned_cols=167 Identities=25% Similarity=0.368 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc--------chhhhcC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI--------TTSYYRG 81 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~~ 81 (253)
+||+|+|++|||||||+++|..+.+...+.|+.+.+.....+.+++..+.+.+|||||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998888888876766566777888899999999997654322 3345789
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHhc---ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 82 AMGIMLVYDITNEKSFDNILKWLRNIDEHA---NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
+|++|+|||++++++|+.+..|++.+.... ..++|+++|+||+|+.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~------------------------------- 129 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ------------------------------- 129 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc-------------------------------
Confidence 999999999999999999999999988764 3679999999999996
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH-HhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-EYGVRFMETSAKANINIEKAFIELATAIYDKTSG 227 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 227 (253)
..+. +..++.+.+++ .+++++++|||++|.|++++|+.+++.+..+-.+
T Consensus 130 ---------------~~~~-----~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 130 ---------------RHRF-----APRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred ---------------cccc-----ccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 2111 33344555554 5679999999999999999999999988865544
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=2.3e-31 Score=201.35 Aligned_cols=160 Identities=32% Similarity=0.585 Sum_probs=138.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..++++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999998888888887554 45566777788899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||++++.+++.+..|+..+.+... .++|+++++||+|+.
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~---------------------------------------- 119 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA---------------------------------------- 119 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----------------------------------------
Confidence 999999999999999999887653 589999999999986
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
. +. ....+..++++..+++++++||++|.|++++|++|.+.+
T Consensus 120 ------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 120 ------A-RT-----VSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ------c-ce-----ecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 2 11 344566778888899999999999999999999998754
No 71
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=2.1e-31 Score=202.20 Aligned_cols=161 Identities=34% Similarity=0.626 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888888788776333 456667778889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|++++++++.+..|+..+.+.. ..+.|+++++||+|+.
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~----------------------------------------- 118 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE----------------------------------------- 118 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----------------------------------------
Confidence 9999999999999998887654 2579999999999986
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
..+. +......++++..+++++++||++|.|++++|++|.+.+.
T Consensus 119 -----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 119 -----SERV-----VSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred -----ccce-----EcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 2222 4445667788888899999999999999999999998765
No 72
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=3e-31 Score=201.28 Aligned_cols=161 Identities=31% Similarity=0.587 Sum_probs=138.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+++|++|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+|||||++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 58999999999999999999999888877788876444 34566778888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||++++.+++.+..|+..+.+.. ..++|+++++||+|+.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~---------------------------------------- 120 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE---------------------------------------- 120 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc----------------------------------------
Confidence 99999999999999999987753 3579999999999986
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
.... +......++++.++++++++||++|.|++++|+.|.+.+
T Consensus 121 ------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 121 ------HQRK-----VSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ------ccce-----ecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 2222 344556788888889999999999999999999998764
No 73
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.4e-31 Score=208.14 Aligned_cols=177 Identities=21% Similarity=0.344 Sum_probs=131.3
Q ss_pred eeEEEEEcCCCCcHHHHHH-HhhcC-----CCCCcccCccce-eeEEEE--------EeeCCeEEEEEEEeCCCcccccc
Q psy9621 9 LFKLLLIGDSGVGKTCVLF-RFSDD-----AFNTTFISTIGI-DFKIKT--------VDLKGKKIKLQIWDTAGQERFHT 73 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~-~l~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~ 73 (253)
.+||+++|++|||||||+. ++.++ .+...+.||++. +..... +.+++..+.+.+|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999996 55443 345667888862 322222 25678889999999999975 3
Q ss_pred cchhhhcCccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621 74 ITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI 152 (253)
Q Consensus 74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (253)
++..+++++|++|+|||++++.||+.+. .|+..+.... .++|+++||||+|+......+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~------------------- 139 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDE------------------- 139 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccch-------------------
Confidence 5667899999999999999999999997 6999987765 579999999999986210000
Q ss_pred cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.. .....+.......+. +..+++++++++++++|++|||++|.||+++|..++++
T Consensus 140 -----~~---~~~~~~~~~~~~~~~-----V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 140 -----VN---RARRPLARPIKNADI-----LPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred -----hh---hcccccccccccCCc-----cCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 00 000000000001122 77788999999999999999999999999999999864
No 74
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=3.4e-31 Score=202.41 Aligned_cols=162 Identities=39% Similarity=0.752 Sum_probs=143.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc-ccchhhhcCccEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH-TITTSYYRGAMGIML 87 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~il 87 (253)
.+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+. .++..+++++|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999999888888999888888888888888999999999999886 577888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|||++++.++..+..|+..+.... ..++|+++++||+|+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~--------------------------------------- 122 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR--------------------------------------- 122 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch---------------------------------------
Confidence 999999999999999999988764 3679999999999986
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccC---CCCHHHHHHHHHHHH
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKA---NINIEKAFIELATAI 221 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~l~~~l~~~~ 221 (253)
..+. +......++++.++++++++||++ +.|++++|..+++.+
T Consensus 123 -------~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 123 -------EQIQ-----VPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred -------hhcC-----CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 2222 455677888888889999999999 889999999998765
No 75
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=3.9e-31 Score=200.55 Aligned_cols=162 Identities=39% Similarity=0.716 Sum_probs=144.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998887788888888888888888899999999999999998899999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
||+++++++..+..|+..+......++|+++++||+|+.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~----------------------------------------- 119 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE----------------------------------------- 119 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----------------------------------------
Confidence 999999999999999999988776789999999999986
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
.... ....+...+++.++++++++||++|.|++++|++|.+.+
T Consensus 120 -----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 120 -----SKRQ-----VSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred -----ccCc-----CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 2222 344566778888889999999999999999999998875
No 76
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.98 E-value=3.8e-31 Score=200.21 Aligned_cols=160 Identities=43% Similarity=0.738 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||++++++..+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888899888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
|++++.+|+.+..|+..+......+.|+++++||+|+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~------------------------------------------ 118 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS------------------------------------------ 118 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc------------------------------------------
Confidence 99999999999999999877665579999999999985
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.... ....+...+++..+++++++||+++.|++++|++|.+.
T Consensus 119 ----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 119 ----DKRQ-----VSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ----ccCc-----cCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 2222 44556777788888999999999999999999999864
No 77
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=5.4e-31 Score=198.67 Aligned_cols=155 Identities=20% Similarity=0.369 Sum_probs=129.6
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||+.++..+.+.+.+.|+ +..+ ...+.+++..+.+.+|||+|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999998887776655 3344 36678888888999999999964 34678999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|++++.||+.+..|+..+..+.. .++|++++|||.|+...
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~--------------------------------------- 114 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES--------------------------------------- 114 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc---------------------------------------
Confidence 99999999999999999987753 67999999999998511
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHH
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
..++ +...++++++++.+ +++++|||++|.||+++|..+.+.
T Consensus 115 -----~~~~-----v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 115 -----NPRV-----IDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred -----CCcc-----cCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 1222 56667788888774 899999999999999999999864
No 78
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.98 E-value=6.6e-31 Score=199.53 Aligned_cols=160 Identities=29% Similarity=0.586 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcC--CCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDD--AFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
+||+++|++|||||||++++... .+...+.++.+.++....+.+. +..+.+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 6778889999888876666664 56789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
+|||++++.++..+..|+..+.... .++|+++|+||+|+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~--------------------------------------- 120 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLA--------------------------------------- 120 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccc---------------------------------------
Confidence 9999999999999999999988765 679999999999986
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
...+ +.....+.++...+++++++||+++.|++++|+.|.+.+
T Consensus 121 -------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 121 -------DKAE-----VTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred -------cccC-----CCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 2222 333445566777789999999999999999999998875
No 79
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=1.5e-30 Score=209.22 Aligned_cols=163 Identities=26% Similarity=0.414 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+|+|++|||||||+++|..+.+...+.+|++ ++....+.+++..+.+.+|||+|++.|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888886 566667778888899999999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHh---------cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEH---------ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
|++++++|+.+..|++++... ...++|+++++||+|+.
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~--------------------------------- 126 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD--------------------------------- 126 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch---------------------------------
Confidence 999999999999999998764 22579999999999986
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH-hCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE-YGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
..+. +..++..+++.. .+++++++||++|.|++++|+.|.+.+...
T Consensus 127 -------------~~~~-----v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~p 173 (247)
T cd04143 127 -------------FPRE-----VQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLP 173 (247)
T ss_pred -------------hccc-----cCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence 2222 344455555543 357899999999999999999999876443
No 80
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=1.9e-30 Score=198.40 Aligned_cols=165 Identities=39% Similarity=0.692 Sum_probs=144.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888788888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcc----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 90 DITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
|++++.+++.+..|.+.+..... .++|+++++||+|+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-------------------------------------- 122 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE-------------------------------------- 122 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc--------------------------------------
Confidence 99999999999999888766653 379999999999986
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.... ...+..+.+++..+ ++++++||++|.|++++|+.+.+.+.++.
T Consensus 123 --------~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 123 --------EKRQ-----VSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQE 170 (172)
T ss_pred --------cccc-----cCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 2121 34455677777787 89999999999999999999999888764
No 81
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.5e-30 Score=198.61 Aligned_cols=164 Identities=21% Similarity=0.289 Sum_probs=140.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
...+||+++|++|||||||+++|.++.+. ..+.||.+.++....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999998 88899998888777788888888999999999999998999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
|+|||++++.+++.+..|+..+... .++|+++|+||+|+.
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~-------------------------------------- 121 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLD-------------------------------------- 121 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEccccc--------------------------------------
Confidence 9999999999999998988876332 479999999999985
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
+... ....+..++++.++. .++++||++|.|++++|+.|.+.+.+
T Consensus 122 --------~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 122 --------EQQQ-----RYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred --------cccc-----ccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhhC
Confidence 2221 222345677888886 57999999999999999999998763
No 82
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=1.3e-30 Score=199.77 Aligned_cols=171 Identities=25% Similarity=0.569 Sum_probs=140.1
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeC
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDI 91 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 91 (253)
|+|+|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 689999999999999999999998888888765543 4566778888999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhh
Q psy9621 92 TNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE 170 (253)
Q Consensus 92 ~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
+++++|+.+. .|+..+.... .++|+++|+||+|+...... .+ ++..
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~-------------------------~~-------~~~~ 126 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKST-------------------------LR-------ELSK 126 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhh-------------------------hh-------hhhc
Confidence 9999999986 6999987765 68999999999998632110 00 0000
Q ss_pred hcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 171 HANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
. .... +...++.++++.++. +++++||++|.|++++|+.+.+.+.+
T Consensus 127 ~--~~~~-----v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 127 Q--KQEP-----VTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred c--cCCC-----ccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 0 1111 556778899999995 99999999999999999999988754
No 83
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=3e-30 Score=196.83 Aligned_cols=163 Identities=29% Similarity=0.588 Sum_probs=140.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.|..+++.++++++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 36999999999999999999999998888888887544 46677788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||++++++++.+..|...+.+.. ..+.|+++++||.|+.
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~---------------------------------------- 119 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE---------------------------------------- 119 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc----------------------------------------
Confidence 99999999999999999887653 3689999999999986
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..+. +..++...+++.++ ++++++||++|.|++++|+++.+.+..
T Consensus 120 ------~~~~-----~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~~ 165 (168)
T cd04177 120 ------DDRQ-----VSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQIIC 165 (168)
T ss_pred ------ccCc-----cCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 2222 34455667777887 899999999999999999999987653
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=2.8e-30 Score=195.45 Aligned_cols=159 Identities=49% Similarity=0.890 Sum_probs=140.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+..+...+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888778889888888777777878889999999999999988999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|++++.+++.+..|++.+..+. ..+.|+++++||+|+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~---------------------------------------- 120 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN---------------------------------------- 120 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc----------------------------------------
Confidence 9999999999999999998775 36899999999999851
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
. . ...++..++++..+++++++||++|.|++++++.+.+.
T Consensus 121 ------~-~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 121 ------R-E-----VTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ------c-c-----cCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 1 1 33456778888889999999999999999999998865
No 85
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=3.2e-30 Score=195.03 Aligned_cols=161 Identities=40% Similarity=0.720 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|+|||||++++....+...+.++.+.++....+.+.+..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887777777766776667777777888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
|++++++++.+..|+..+......++|+++++||+|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~------------------------------------------ 118 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE------------------------------------------ 118 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc------------------------------------------
Confidence 99999999999999999988776689999999999986
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
.... +.....+++++..+++++++|++++.|++++|++|.+.+
T Consensus 119 ----~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 119 ----RQRV-----VSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred ----cccC-----CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 2222 344556777788889999999999999999999998765
No 86
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=3.1e-30 Score=197.65 Aligned_cols=169 Identities=27% Similarity=0.506 Sum_probs=137.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|+|||||++++..+.+...+.++. .+.....+.+++..+.+.+|||||++++..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988988888886 3555556777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|++++.+|+.+. .|+..+.... .++|+++++||+|+..... ....+..
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~----------------------------~~~~~~~-- 128 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVN----------------------------VLIQLAR-- 128 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChh----------------------------HHHHHhh--
Confidence 999999999985 6988887653 5799999999999862100 0000000
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHH
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
. ..+. +..+++..+++..+. +++++||++|.|++++|+.++.
T Consensus 129 --~--~~~~-----v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 129 --Y--GEKP-----VSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred --c--CCCC-----cCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 0 1122 556678889999987 9999999999999999998764
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=3.3e-30 Score=195.96 Aligned_cols=160 Identities=31% Similarity=0.496 Sum_probs=134.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc-ccccchhhhcCccEEEEEE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER-FHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~ilv~ 89 (253)
||+|+|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++. +......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 699999999999999999998888777777775444 35567788888999999999985 3455677899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc--ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHA--NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
|++++.+|+.+..|+..+.... ..++|+++|+||+|+.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---------------------------------------- 119 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL---------------------------------------- 119 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH----------------------------------------
Confidence 9999999999999998887764 3579999999999986
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCC-CHHHHHHHHHHHHH
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANI-NIEKAFIELATAIY 222 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~ 222 (253)
..+. +...+..++++..+.+++++||++|. |++++|..|.+.+.
T Consensus 120 ------~~~~-----v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 120 ------HYRQ-----VSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred ------HhCc-----cCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 2222 55567788888889999999999995 99999999998764
No 88
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=9.9e-30 Score=193.99 Aligned_cols=165 Identities=51% Similarity=0.865 Sum_probs=142.8
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
+...+||+++|++|||||||++++..+.+.+.+.++.+.++....+.+.+..+.+.+||++|+..+...+..+++.+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34579999999999999999999998888877788888777777788888888999999999999998889999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
++|||++++.+++.+..|+..+......++|+++++||+|+.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~-------------------------------------- 125 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA-------------------------------------- 125 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc--------------------------------------
Confidence 999999999999999999999887776689999999999986
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
..+. +..+..+.+.+....+++++||++|.|++++|+.|.+.+
T Consensus 126 --------~~~~-----i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 126 --------ERRE-----VSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred --------cccc-----cCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 2222 333445666666678999999999999999999998764
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=7.3e-30 Score=202.64 Aligned_cols=164 Identities=22% Similarity=0.370 Sum_probs=137.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc-CccEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR-GAMGIML 87 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~~il 87 (253)
+||+++|++|||||||+++|..+.+. ..+.++.+.++...++.+.+....+.+|||+|++. .....+++ ++|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999888886 66677776577777788888889999999999982 23445666 9999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~--------------------------------------- 119 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA--------------------------------------- 119 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc---------------------------------------
Confidence 999999999999999999987764 2579999999999986
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
.... +..++..+++...+++++++||++|.||+++|+.|.+.+..+..
T Consensus 120 -------~~~~-----v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~ 167 (221)
T cd04148 120 -------RSRE-----VSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRD 167 (221)
T ss_pred -------ccce-----ecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhc
Confidence 2222 44556678888888999999999999999999999998875443
No 90
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.2e-29 Score=196.69 Aligned_cols=172 Identities=25% Similarity=0.462 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
.||+|+|++|+|||||++++..+.+...+.++.+..+. ..+.+++..+.+.+||++|++.+......+++.+++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 59999999999999999999988888777777764544 35566777788999999999988877777889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|++++++|+.+. .|+..+.++. .++|+++|+||+|+......
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~------------------------------------ 123 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVA------------------------------------ 123 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCccc------------------------------------
Confidence 999999999997 6999988765 57999999999998521100
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
.........+..++...+++..+ .++|+|||++|.|++++|+.+.+.+...
T Consensus 124 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 124 -----KEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred -----ccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcc
Confidence 00000011144566788899998 4899999999999999999999877553
No 91
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1.1e-29 Score=194.71 Aligned_cols=171 Identities=27% Similarity=0.533 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999998877778775333 345667777888999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|++++.+|+.+. .|+..+... ..++|+++++||+|+...... ...+
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~--------------------------------~~~~ 126 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKT--------------------------------LARL 126 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhh--------------------------------HHHH
Confidence 999999999986 688888766 478999999999998622100 0000
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
... .... +..+++..+++..+. +++++||++|.|++++|+.+++.+
T Consensus 127 ~~~--~~~~-----v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 127 NDM--KEKP-----VTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred hhc--cCCC-----CCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 000 1112 556678889999985 899999999999999999998875
No 92
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=2e-29 Score=189.57 Aligned_cols=158 Identities=53% Similarity=0.911 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||++++.+..+...+.++.+.++....+...+....+.+||+||+..+......+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888889998888888888888899999999999999889999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
|++++++++.+..|+..+......+.|+++++||+|+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------------------------------------------ 118 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE------------------------------------------ 118 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc------------------------------------------
Confidence 99999999999999999988876789999999999985
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHH
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 218 (253)
.... ...++..+++..++++++++||+++.|++++|++|.
T Consensus 119 ----~~~~-----~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 119 ----DQRQ-----VSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ----cccc-----ccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 1122 445667778888889999999999999999999886
No 93
>KOG0395|consensus
Probab=99.97 E-value=2.2e-29 Score=194.90 Aligned_cols=167 Identities=34% Similarity=0.541 Sum_probs=151.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
..+||+++|.+|||||+|+.+|....|...|.||++ +.+.+.+.+++....+.|+||+|+++|..+...++++.+++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 368999999999999999999999999999999998 5556778888999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
||+++++.||+.+..+++.|.+.. ...+|+++||||+|+.
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~--------------------------------------- 121 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE--------------------------------------- 121 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch---------------------------------------
Confidence 999999999999999999995543 3568999999999997
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +..++++.++..++++++|+||+.+.+++++|..|.+.+.....
T Consensus 122 -------~~R~-----V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~ 169 (196)
T KOG0395|consen 122 -------RERQ-----VSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPRE 169 (196)
T ss_pred -------hccc-----cCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhc
Confidence 3344 88889999999999999999999999999999999999887443
No 94
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=8.4e-29 Score=196.18 Aligned_cols=171 Identities=30% Similarity=0.533 Sum_probs=149.2
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR 80 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (253)
|.+.+....+||+++|++|||||||++++..+.+...+.++++.++....+..+++.+.+.+|||+|++.+..++..+++
T Consensus 1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~ 80 (215)
T PTZ00132 1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI 80 (215)
T ss_pred CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence 66778888999999999999999999999988898889999999888888878888999999999999999999999999
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
+++++|+|||++++.+|..+..|+..+.... .++|+++++||+|+.
T Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~--------------------------------- 126 (215)
T PTZ00132 81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVK--------------------------------- 126 (215)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCc---------------------------------
Confidence 9999999999999999999999999988765 679999999999985
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
+ .. .. ....++++..++.++++||++|.|++++|.+|.+.+....
T Consensus 127 -------------~-~~-----~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 127 -------------D-RQ-----VK-ARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred -------------c-cc-----CC-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhcc
Confidence 1 11 11 1223566777889999999999999999999999887643
No 95
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=7e-29 Score=190.40 Aligned_cols=171 Identities=29% Similarity=0.564 Sum_probs=137.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
.||+|+|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999999998888888875553 45667778889999999999999988888899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|++++++|+.+. .|+..+.+.. .++|+++++||+|+..+... ...+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~--------------------------------~~~i 127 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHT--------------------------------RREL 127 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhh--------------------------------hhhh
Confidence 999999999986 5888877654 57999999999998622110 0000
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
... .... +...+++++++..+ .++++|||++|.|++++|+.|.+.+
T Consensus 128 ~~~--~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 128 AKM--KQEP-----VKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred hhc--cCCC-----ccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 000 1111 44567788888887 4899999999999999999998764
No 96
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.1e-28 Score=186.99 Aligned_cols=162 Identities=33% Similarity=0.588 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||++++....+...+.++.+..+ .....+++..+.+.+|||||+..+...+..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999888877777776444 455667778899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|++++.++..+..|+..+..... .++|+++++||+|+.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~----------------------------------------- 118 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE----------------------------------------- 118 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc-----------------------------------------
Confidence 99999999999999999887643 579999999999986
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..+. ........+++.++++++++||++|.|++++|+.+...+.+
T Consensus 119 -----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 119 -----DKRQ-----VSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIRQ 163 (164)
T ss_pred -----cccc-----cCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 2111 33345567777888999999999999999999999987753
No 97
>KOG0393|consensus
Probab=99.97 E-value=1.5e-29 Score=191.66 Aligned_cols=179 Identities=27% Similarity=0.525 Sum_probs=152.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
...+|++|||+.++|||+|+..+..+.|+..|.||+. +-+...+.+. ++.+.+.+|||+|+++|..++...++++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999997 4444667784 9999999999999999999998899999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 86 MLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
+++|+++++.||+++. +|+.++..++ ++.|+++||+|.|+.... ..
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~--------------------------------~~ 127 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDP--------------------------------ST 127 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCH--------------------------------HH
Confidence 9999999999999976 8999999998 899999999999996211 01
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
.+++... .... +..++++.+++++| +.|+|+||++..|++++|+..++......+
T Consensus 128 ~~~l~~~--~~~~-----Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 128 LEKLQRQ--GLEP-----VTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred HHHHHhc--cCCc-----ccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 1111111 1122 77889999999999 799999999999999999999999887553
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=8.9e-29 Score=190.68 Aligned_cols=157 Identities=21% Similarity=0.388 Sum_probs=125.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+++|++|||||||++++..+.+. .+.||++.++. .+. ...+.+++||+||++.+..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999987775 45788886653 233 34578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHh-cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||+++++++..+..++..+... ...++|++|++||+|+...
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------------------------------------ 133 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------------------------------ 133 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------------------------------------
Confidence 999999999999988877776543 2257999999999998521
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhC--------CceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYG--------VRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
. ...++.+.++ +.++++||++|+||+++|++|...+..+
T Consensus 134 -----------------~---~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 134 -----------------M---NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred -----------------C---CHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence 1 1223333333 2456899999999999999999888764
No 99
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=1.4e-28 Score=185.59 Aligned_cols=158 Identities=37% Similarity=0.617 Sum_probs=137.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD 90 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 90 (253)
||+|+|++|||||||++++++..+...+.++.+ +.........+..+.+.+||+||+..+..++..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 699999999999999999998888888888876 5555666677777899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 91 ITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
+++++++..+..|...+..... .+.|+++++||+|+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------------------------------------------ 117 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE------------------------------------------ 117 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc------------------------------------------
Confidence 9999999999999999888764 589999999999986
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.... ...+.+.++++.++.+++++|++++.|++++|+.|.+.
T Consensus 118 ----~~~~-----~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 118 ----NERQ-----VSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred ----ccce-----ecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 2122 44567788888888999999999999999999999875
No 100
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=3e-29 Score=190.47 Aligned_cols=156 Identities=19% Similarity=0.299 Sum_probs=127.9
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeC
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDI 91 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 91 (253)
|+++|++|||||||+++|.++.+...+.||.+.+. ..+.+..+.+.+||++|++.+..++..+++++|++|+|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999888888889988653 23445568899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhh
Q psy9621 92 TNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 171 (253)
Q Consensus 92 ~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (253)
+++.++..+..|+..+.... .++|+++++||+|+..++..+
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~-------------------------------------- 118 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQ-------------------------------------- 118 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHH--------------------------------------
Confidence 99999999999988886554 689999999999986321110
Q ss_pred cCCCchhhhhhccchhHHHHHHHhCCceEEeeccC------CCCHHHHHHHHHH
Q psy9621 172 ANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKA------NINIEKAFIELAT 219 (253)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~gi~~l~~~l~~ 219 (253)
..........++++.+++++++||++ ++||+++|+.++.
T Consensus 119 ---------~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 119 ---------EIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred ---------HHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 00111234566777788999999999 9999999998864
No 101
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=4.9e-28 Score=186.57 Aligned_cols=165 Identities=31% Similarity=0.520 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
.||+++|++|||||||++++....+...+.++.+..+ ...+.+.+..+.+.+|||||++++..++..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5999999999999999999999888777777775444 345666777788999999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|+++..+++.+..|+..+.+.. ..+.|+++++||+|+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~----------------------------------------- 119 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH----------------------------------------- 119 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh-----------------------------------------
Confidence 9999999999999988887754 3678999999999986
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +.......+++.++.+++++||+++.|++++|.+|.+.+...+.
T Consensus 120 -----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 167 (180)
T cd04137 120 -----TQRQ-----VSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVEN 167 (180)
T ss_pred -----hcCc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 2222 33345567777788999999999999999999999998876553
No 102
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=6.6e-29 Score=189.28 Aligned_cols=155 Identities=21% Similarity=0.388 Sum_probs=121.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+++|++|||||||++++..+.+.. +.||.+.++. .+. ...+.+++|||+|++.+..++..+++++|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 346899999999999999999998777654 5788886664 222 24678999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.++..+..|+..+.... ..++|+++++||+|+...
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------------------------------ 125 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------------------------------ 125 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------------------------------
Confidence 9999999999999988877765432 357999999999998511
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHH-----HHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIA-----REYGVRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
+..++.+++. +...++++++||++|.|++++|++|.+
T Consensus 126 -----------------~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 126 -----------------MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred -----------------CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 1112222222 122357899999999999999999864
No 103
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=2.1e-28 Score=191.45 Aligned_cols=168 Identities=26% Similarity=0.401 Sum_probs=136.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD 90 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 90 (253)
||+++|++|||||||+++|+.+.+...+.++.+ +.....+.+.+..+.+.+||++|+..|..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 699999999999999999999998887777765 4445567777778899999999999999888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 91 ITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
++++.+++.+..|+..+..... .++|+++++||+|+...
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~---------------------------------------- 119 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE---------------------------------------- 119 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc----------------------------------------
Confidence 9999999999999998887654 57999999999998621
Q ss_pred hhcCCCchhhhhhccchhHHHHH-HHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCC
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIA-REYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD 229 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~ 229 (253)
... +......+.. ...+.+++++||++|.|++++|++|.+.+......++
T Consensus 120 -----~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~ 170 (198)
T cd04147 120 -----ERQ-----VPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANLPYNLSP 170 (198)
T ss_pred -----ccc-----ccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhcccccch
Confidence 111 2222222222 2456789999999999999999999998875444444
No 104
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=1.9e-28 Score=189.31 Aligned_cols=166 Identities=22% Similarity=0.362 Sum_probs=131.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEee-CCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDL-KGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
.+||+++|++|||||||++++..+.+... .|+.+.+.....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998877654 677776665555544 3456889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|||++++.++..+..|+.++.... ..++|+++++||+|+...
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------------------------------- 124 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA------------------------------------- 124 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc-------------------------------------
Confidence 999999999999988888877653 357999999999998511
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHH------HHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIA------REYGVRFMETSAKANINIEKAFIELATAIYDKTSGR 228 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 228 (253)
...+....+. ...+++++++||++|.|++++|++|.+.+.+.+.+.
T Consensus 125 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~~~ 176 (183)
T cd04152 125 ----------------LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRKML 176 (183)
T ss_pred ----------------CCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 1111112221 112357899999999999999999999987665443
No 105
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=3.1e-28 Score=187.90 Aligned_cols=167 Identities=20% Similarity=0.350 Sum_probs=126.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+++|++|||||||++++..+.+.. +.||.+.++. .+.. ..+.+++|||+|++.+..++..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998877764 5778876654 3333 4578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHh-cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.++..+..++..+... ...++|++|++||.|+...... ++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------------------------~~----- 138 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST--------------------------TE----- 138 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH--------------------------HH-----
Confidence 999999999999988777776443 2256899999999998521000 00
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
+........+....+.++++||++|.|++++|++|.+.+.++++
T Consensus 139 -----------------i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~~ 182 (182)
T PTZ00133 139 -----------------VTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKSMQ 182 (182)
T ss_pred -----------------HHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 00000001111223467799999999999999999999888763
No 106
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=3e-28 Score=186.92 Aligned_cols=162 Identities=20% Similarity=0.368 Sum_probs=123.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+++|++|||||||++++..+.+. .+.||++.++.. +.. ..+.+.+|||||++.+..++..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 34689999999999999999999877774 457888876642 332 4578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.+++....|+..+.... ..++|++|++||.|+...... ++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------------------------~~----- 134 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA--------------------------AE----- 134 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH--------------------------HH-----
Confidence 9999999999999998888876532 257999999999998521000 00
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
+.........+...+.++++||++|.|++++|++|...+
T Consensus 135 -----------------i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 135 -----------------ITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred -----------------HHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 000000011112234577899999999999999997764
No 107
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=2.8e-28 Score=186.12 Aligned_cols=157 Identities=21% Similarity=0.388 Sum_probs=124.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD 90 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 90 (253)
||+++|++|||||||++++....+.. +.||.+.++. .+.. ..+.+.+|||||++.+..++..+++++|++|+|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886654 6788876664 2332 45789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 91 ITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
++++.++..+..|+..+.... ..+.|+++++||+|+...
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---------------------------------------- 115 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA---------------------------------------- 115 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC----------------------------------------
Confidence 999999999999998887543 256899999999998511
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHh------CCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREY------GVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
+..++.+++++.. .+.++++||++|.||+++|++|.+.+....
T Consensus 116 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 116 -------------LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred -------------CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcc
Confidence 2222233333211 236889999999999999999998776643
No 108
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=3.5e-28 Score=183.72 Aligned_cols=113 Identities=23% Similarity=0.517 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||++++..+.+. .+.|+++.++. .+.. ..+.+.+|||||++.+..++..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999887776 46788886653 2332 4678999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHh-cccccceeEEeeeeccc
Q psy9621 90 DITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTA 127 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~ 127 (253)
|++++.++..+..|+..+... ...+.|+++++||+|+.
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 999999999999888777543 22568999999999985
No 109
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=1.1e-27 Score=183.45 Aligned_cols=170 Identities=36% Similarity=0.575 Sum_probs=138.7
Q ss_pred CCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhc
Q psy9621 32 DAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA 111 (253)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~ 111 (253)
+.|.+.+.||+|.++....+.+.+..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45778889999999988888888999999999999999999999999999999999999999999999999999998776
Q ss_pred ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHH
Q psy9621 112 NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAI 191 (253)
Q Consensus 112 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (253)
..++|+++|+||+|+. ..+. +...++..+
T Consensus 83 ~~~~piilVgNK~DL~----------------------------------------------~~~~-----v~~~e~~~~ 111 (176)
T PTZ00099 83 GKDVIIALVGNKTDLG----------------------------------------------DLRK-----VTYEEGMQK 111 (176)
T ss_pred CCCCeEEEEEECcccc----------------------------------------------cccC-----CCHHHHHHH
Confidence 5689999999999986 2222 455567788
Q ss_pred HHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCC--CCCCeEeecCCCCCCCCCCCC
Q psy9621 192 AREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPL--EAPDRVTIDKKPDRGGMAGGC 252 (253)
Q Consensus 192 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~c 252 (253)
++.++..++++||++|.||+++|++|.+.+.........+ ..++.+.-.+.-+.+.+-++|
T Consensus 112 ~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (176)
T PTZ00099 112 AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNSNSNDANVVDIQLTNNSNANDKNMLSKC 174 (176)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccccCCCCCCccceeccccCCccchhhHhhh
Confidence 8888899999999999999999999999987755433333 112333333444446666666
No 110
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=1.9e-27 Score=181.57 Aligned_cols=168 Identities=29% Similarity=0.563 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||+++|.++.+...+.++.. +.........+..+.+.+||+||++++...+..+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6999999999999999999999988777777765 334455667788899999999999999888888899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|++++.++.... .|+..+.... .+.|+++++||+|+....... .|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~-----------------------------~~~--- 126 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTL-----------------------------KKL--- 126 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhh-----------------------------hhc---
Confidence 999999988876 5777776655 589999999999987332110 000
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHH
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
...... +..++..+++..++. +++++||++|.|++++|+.|.+
T Consensus 127 ---~~~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 127 ---EKGKEP-----ITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred ---ccCCCc-----cCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 000011 445667788888886 9999999999999999999875
No 111
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=9.4e-28 Score=187.05 Aligned_cols=118 Identities=26% Similarity=0.503 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-----CeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-----GKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
+||+++|++|||||||+++|..+.+...+.+|++.++....+.++ +..+.+.+|||+|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999999899999988877766664 467889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-------------------ccccceeEEeeeeccc
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHA-------------------NEDVEKMILGKTKDTA 127 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~p~iiv~nK~D~~ 127 (253)
+|+|||+++++||+.+..|+.++.... ..++|++|||||.|+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 999999999999999999999997642 2479999999999996
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=6.3e-28 Score=184.84 Aligned_cols=157 Identities=20% Similarity=0.326 Sum_probs=123.1
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
+.+..+||+++|++|||||||++++.+..+ ..+.++.+... ..+.+. .+.+.+|||||++.+..++..+++++|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 456778999999999999999999997644 45567777443 334444 4779999999999988888999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHh-cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+++|||++++.++.....|+..+... ...++|+++++||+|+..+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---------------------------------- 130 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA---------------------------------- 130 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC----------------------------------
Confidence 99999999999999998888887653 2368999999999998621
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHH-----HHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIA-----REYGVRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
...++..++. ...+++++++||++|.|++++|+++..
T Consensus 131 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 131 -------------------LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred -------------------CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 1111222222 123578999999999999999999863
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2.6e-27 Score=180.24 Aligned_cols=162 Identities=23% Similarity=0.361 Sum_probs=124.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+++|++|||||||+++|.++.+...+.++.. ++ .....+.+..+.+.+|||||.+++...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999988766443321 22 233455667789999999999988877777889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|++++.+++.+. .|+..+.... .++|+++|+||+|+...
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~--------------------------------------- 118 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDG--------------------------------------- 118 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccc---------------------------------------
Confidence 999999999985 6888887665 58999999999998621
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.... ...+....+++.+. .+++++||++|.|++++|+.+.+.+..
T Consensus 119 -------~~~~---~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 119 -------SSQA---GLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred -------cchh---HHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 1100 01122223333332 389999999999999999999887654
No 114
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=7.4e-27 Score=190.49 Aligned_cols=123 Identities=22% Similarity=0.459 Sum_probs=110.2
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-------------CeEEEEEEEeCCCcccc
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-------------GKKIKLQIWDTAGQERF 71 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~ 71 (253)
+....+||+|+|+.|||||||+++|..+.+...+.+|+|.++....+.+. +..+.++||||+|++.|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 45567999999999999999999999999988889999988876766654 24688999999999999
Q ss_pred cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc------------cccceeEEeeeeccc
Q psy9621 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN------------EDVEKMILGKTKDTA 127 (253)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~iiv~nK~D~~ 127 (253)
..++..++++++++|+|||++++.+|+.+..|++.+..+.. .++|++|||||+|+.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 99999999999999999999999999999999999987642 258999999999996
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=3.5e-27 Score=178.51 Aligned_cols=113 Identities=18% Similarity=0.395 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCC-CCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDA-FNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+|+++|++|||||||+++|.+.. +...+.|+.+..... +. ...+.+.+|||||++++..++..+++++|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999875 355677888755432 22 34678999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc---ccccceeEEeeeeccc
Q psy9621 90 DITNEKSFDNILKWLRNIDEHA---NEDVEKMILGKTKDTA 127 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~ 127 (253)
|++++.++.....|+..+.+.. ..++|+++++||+|+.
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 9999999999888888876542 2579999999999986
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=3.7e-27 Score=180.72 Aligned_cols=159 Identities=21% Similarity=0.344 Sum_probs=121.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
..+||+++|++|+|||||++++..+.+.. +.++.+.++.. +.+ ..+.+.+||+||++.+...+..+++++|++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999887765 47787766542 222 35789999999999999899999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|||+++++++.....++..+.+... .++|+++++||+|+.+..
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------------------------------------ 132 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------------------------------------ 132 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------------------------------------
Confidence 9999999999888887777765432 579999999999986210
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
.... +.........+..+++++++||++|.|++++|++|.+
T Consensus 133 --------~~~~----i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 133 --------TPAE----ISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred --------CHHH----HHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 0000 0000011111234568999999999999999999864
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=4.7e-27 Score=177.59 Aligned_cols=157 Identities=25% Similarity=0.463 Sum_probs=119.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD 90 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 90 (253)
+|+++|++|||||||+++|..+.+... .|+.+.++. .+... ..+.+.+|||||+..+..++..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998887644 677775543 33333 45789999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 91 ITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
++++.++..+..|+..+.+... .++|+++++||+|+..... .++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------------------~~~--------- 121 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT--------------------------AEE--------- 121 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC--------------------------HHH---------
Confidence 9999999999888888765432 5799999999999851100 000
Q ss_pred hhcCCCchhhhhhccch-hHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621 170 EHANEDPQVVNSWVCKH-RGEAIAREYGVRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
+... ....++...+++++++||++|.|++++|++|.+
T Consensus 122 -------------i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 122 -------------ITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred -------------HHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 0000 012223334567999999999999999999864
No 118
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=6.5e-27 Score=178.16 Aligned_cols=157 Identities=20% Similarity=0.283 Sum_probs=122.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD 90 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 90 (253)
+|+++|++|||||||++++.+. +...+.||++... ..+.. ..+.+.+||+||++.+..++..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 6677788888653 23333 45779999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 91 ITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
++++.+++.+..|+..+.+... .++|+++++||+|+..++..
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~------------------------------------- 118 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG------------------------------------- 118 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH-------------------------------------
Confidence 9999999999999998876532 57999999999998733211
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHh--CCceEEeeccCC------CCHHHHHHHHHH
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREY--GVRFMETSAKAN------INIEKAFIELAT 219 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~------~gi~~l~~~l~~ 219 (253)
. ..........++++. .+.++++||++| .|+++.|+||..
T Consensus 119 -------~---~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 119 -------A---DVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred -------H---HHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 0 001111233444333 357888999998 899999999964
No 119
>KOG4252|consensus
Probab=99.94 E-value=2e-28 Score=178.81 Aligned_cols=172 Identities=30% Similarity=0.592 Sum_probs=158.5
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR 80 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (253)
|-...++.-+|++++|..++||||+++++..+-|...|..++|+++....+.+.+..+.+.+|||+|+++|......|++
T Consensus 12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr 91 (246)
T KOG4252|consen 12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR 91 (246)
T ss_pred CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 34455677899999999999999999999999999999999999999888888888888999999999999999999999
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
++-+.++||+-+++.||+....|++.+.... ..+|.++|-||+|+.
T Consensus 92 gaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlv--------------------------------- 137 (246)
T KOG4252|consen 92 GAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLV--------------------------------- 137 (246)
T ss_pred cccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhh---------------------------------
Confidence 9999999999999999999999999998877 789999999999998
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
++.. +...+.+.+++.+...++.+|++.+.|+..+|..|+..+.++
T Consensus 138 -------------eds~-----~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 138 -------------EDSQ-----MDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQ 183 (246)
T ss_pred -------------Hhhh-----cchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4455 778889999999999999999999999999999998877654
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=3.9e-26 Score=172.33 Aligned_cols=156 Identities=23% Similarity=0.367 Sum_probs=115.2
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD 90 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 90 (253)
||+++|++|+|||||++++..+.+.. +.|+++.++. .+. +....+++|||||++.+..++..++..++++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998777654 4677765553 233 245789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 91 ITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
++++.++.....++..+.+. ...+.|+++++||+|+..+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~------------------------------------- 118 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE------------------------------------- 118 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH-------------------------------------
Confidence 99998888777666655432 2257999999999998621000
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
.+ +.........+..+.+++++||++|.|++++|++|.+
T Consensus 119 ------~~-----i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 119 ------AE-----ISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred ------HH-----HHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 00 0000000111122357999999999999999999875
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=5.8e-26 Score=172.79 Aligned_cols=113 Identities=25% Similarity=0.452 Sum_probs=91.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCC------CCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAF------NTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
||+|+|++|+|||||++++..... ...+.++++.++. .+.+. ...+.+|||||++.+..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999975322 2334566665553 23333 5679999999999999889999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccc
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTA 127 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~ 127 (253)
+++|+|++++.++.....|+..+.+.. ..++|+++++||+|+.
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 999999999999999888888876643 3579999999999985
No 122
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=6.1e-26 Score=173.90 Aligned_cols=165 Identities=25% Similarity=0.413 Sum_probs=127.5
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
.+...+||+++|+.|||||||++++..+.... +.||.|.+.. .+.+. ...+.+||.+|+..++..|..++.++++
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~--~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIE--EIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEE--EEEET--TEEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccc--eeeeC--cEEEEEEeccccccccccceeeccccce
Confidence 45789999999999999999999999765444 6788875554 44444 4679999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|+|.++++.+......+..+.... -.++|++|++||.|+.++... +++
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~--------------------------~~i-- 136 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSE--------------------------EEI-- 136 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTH--------------------------HHH--
T ss_pred eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchh--------------------------hHH--
Confidence 999999999999999988888876653 268999999999998632111 000
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
...+. ...+.....+.++.|||.+|+|+++.+++|.+.+
T Consensus 137 ----------------~~~l~---l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 137 ----------------KEYLG---LEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp ----------------HHHTT---GGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ----------------Hhhhh---hhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 00011 1111123457889999999999999999998764
No 123
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.94 E-value=6.6e-26 Score=176.21 Aligned_cols=116 Identities=22% Similarity=0.379 Sum_probs=95.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+++|++|||||||++++.+..+. .+.++.+... ..+.+. ...+.+||+||+..+..++..++++++++|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999987764 4566665433 234444 367899999999988888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccc
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTA 127 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~ 127 (253)
+|+|++++.++.....|+..+.+.. ..+.|+++++||+|+.
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 9999999999998888888876543 2579999999999986
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=6.9e-26 Score=170.87 Aligned_cols=156 Identities=21% Similarity=0.399 Sum_probs=119.1
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD 90 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 90 (253)
||+++|++|||||||++++.+..+ ..+.++.+.+... +.+ ....+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 699999999999999999998874 4456677655433 333 35779999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 91 ITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
++++.++.....|+..+.... ..+.|+++++||+|+...... +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--------------------------~---------- 119 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV--------------------------S---------- 119 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH--------------------------H----------
Confidence 999999999988888876643 368999999999998621100 0
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
+ +.............++++++||++|.|++++|+.|..
T Consensus 120 -------~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 120 -------E-----LIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred -------H-----HHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 0 1100011111223468999999999999999999864
No 125
>KOG0073|consensus
Probab=99.93 E-value=3.7e-25 Score=159.48 Aligned_cols=169 Identities=20% Similarity=0.323 Sum_probs=135.6
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
+..+.+++|+++|..|+||||++++|.+.. .....||.|+.. +++.++ .+++++||.+|+...+..|..|+...|
T Consensus 11 k~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I--ktl~~~--~~~L~iwDvGGq~~lr~~W~nYfestd 85 (185)
T KOG0073|consen 11 KLKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI--KTLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTD 85 (185)
T ss_pred HhhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee--EEEEec--ceEEEEEEcCCcchhHHHHHHhhhccC
Confidence 346779999999999999999999999865 444578887444 455444 577999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
++|+|+|.+++..++.....++.+..-. -.+.|++|++||.|+.++=+.+.+
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i--------------------------- 138 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEI--------------------------- 138 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHH---------------------------
Confidence 9999999999999999887777765532 257899999999999743211000
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
......+.+++.+.++++-|||.+|+++.+-+++|...++++
T Consensus 139 --------------------~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 139 --------------------SKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred --------------------HHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 112335667788889999999999999999999999988774
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=1.1e-24 Score=168.47 Aligned_cols=116 Identities=21% Similarity=0.326 Sum_probs=94.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
+..+||+++|.+|||||||++++.++.+.. +.|+.+.+. ..+.+ ..+.+.+||+||++.+..++..+++++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456899999999999999999999876643 355554332 22333 3477999999999998889999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccc
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTA 127 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~ 127 (253)
+|+|++++.++.....++..+.+.. ..++|+++++||+|+.
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 9999999999999888888776532 2579999999999985
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=7.4e-25 Score=168.62 Aligned_cols=154 Identities=19% Similarity=0.279 Sum_probs=114.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCC-------CCCcccC------ccceeeEEEEEee-----CCeEEEEEEEeCCCccccc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDA-------FNTTFIS------TIGIDFKIKTVDL-----KGKKIKLQIWDTAGQERFH 72 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~ 72 (253)
||+++|++|+|||||+++|.+.. +...+.+ +.|+++......+ ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998632 2122222 2244554443333 5567889999999999999
Q ss_pred ccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621 73 TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI 152 (253)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (253)
.++..+++++|++|+|||+++..++.....|.... ..++|+++++||+|+..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~------------------------ 133 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPS------------------------ 133 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCc------------------------
Confidence 99999999999999999999877766666554332 24789999999999851
Q ss_pred cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
.. ......++++.+++ .++++||++|.|++++|+.|.+.+
T Consensus 134 ----------------------~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 134 ----------------------AD-------PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ----------------------CC-------HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 11 11123455555565 489999999999999999998764
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=2e-24 Score=162.42 Aligned_cols=156 Identities=24% Similarity=0.399 Sum_probs=120.0
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeC
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDI 91 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 91 (253)
|+++|++|||||||++++.+..+...+.|+.+.++.. +.. ..+.+.+||+||+..+..++..+++.+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999999998888988876643 322 337899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhh
Q psy9621 92 TNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE 170 (253)
Q Consensus 92 ~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
+++.++.....|+..+.... ..++|+++++||+|+...... ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--------------------------~~---------- 121 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--------------------------DE---------- 121 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--------------------------HH----------
Confidence 99999988887777765432 257899999999998521000 00
Q ss_pred hcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621 171 HANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
..............++++++|+++|.|+++++++|.+
T Consensus 122 ------------~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 122 ------------LIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ------------HHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 0000000011123468899999999999999999875
No 129
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=5.2e-24 Score=163.00 Aligned_cols=118 Identities=22% Similarity=0.376 Sum_probs=94.8
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
+....+||+++|++|||||||++++.+..+.. +.++.|.+.. .+... ...+.+||++|+..+...+..+++.+++
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 34557999999999999999999999875543 4666665443 33344 3668999999998888888888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccc
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTA 127 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~ 127 (253)
+++|+|+++..++.....++..+.... ..++|+++++||+|+.
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 999999999999988887777665432 3579999999999985
No 130
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=1.1e-23 Score=157.93 Aligned_cols=158 Identities=28% Similarity=0.435 Sum_probs=126.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+++|++|+|||||++++....+...+.++.+.++....+..++..+.+.+||+||+..+..++..+.+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999887777777887777766677776668899999999999988888889999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 89 YDITNE-KSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 89 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
+|+... .++.... .|...+......+.|+++++||.|+..
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------------------------- 122 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD-------------------------------------- 122 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc--------------------------------------
Confidence 999887 6776665 677777666644899999999999861
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHH
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 218 (253)
.. ........+......+++++||++|.|++++|+.|.
T Consensus 123 --------~~------~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 123 --------AK------LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred --------ch------hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 11 111222333333347899999999999999998863
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.92 E-value=7.1e-24 Score=161.42 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc---------chhhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI---------TTSYYR 80 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------~~~~~~ 80 (253)
.+|+++|++|+|||||+++|.+..+.....+....+.. .-......+.+.+|||||....... ......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLF--VGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCccccee--EEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 37999999999999999999987764322111111111 1122234578999999998431110 001112
Q ss_pred CccEEEEEEeCCChhhH--HHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 81 GAMGIMLVYDITNEKSF--DNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
.+|++|+|+|++++.++ +....|+..+.... .++|+++++||+|+..
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~------------------------------ 127 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLT------------------------------ 127 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCc------------------------------
Confidence 36899999999987653 66667888876554 5799999999999862
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
... +. ...++.+..+.+++++||++|.|++++|+++.+.+
T Consensus 128 ----------------~~~-----~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 128 ----------------FED-----LS--EIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ----------------hhh-----HH--HHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 111 11 13444555568999999999999999999998875
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.92 E-value=1e-23 Score=160.85 Aligned_cols=157 Identities=11% Similarity=0.143 Sum_probs=108.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc----cccccchhhh---cCcc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE----RFHTITTSYY---RGAM 83 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~---~~~d 83 (253)
+|+++|.+|||||||+++|.+........+....+.....+.+.+ ...+.+|||||.. .+..+...++ ..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999987543211111111111111222222 2479999999964 2223334443 4699
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 84 GIMLVYDITNE-KSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 84 ~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
++++|+|++++ +++..+..|.+.+..... .+.|+++|+||+|+..
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~-------------------------------- 128 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD-------------------------------- 128 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC--------------------------------
Confidence 99999999999 789999999988877642 4789999999999862
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH-hCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE-YGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
... . ......+... .+.+++++||+++.|++++|++|.+.
T Consensus 129 --------------~~~-----~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 129 --------------EEE-----L-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred --------------chh-----h-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 111 1 1223334444 36789999999999999999998864
No 133
>KOG0070|consensus
Probab=99.91 E-value=3.8e-24 Score=158.28 Aligned_cols=166 Identities=18% Similarity=0.353 Sum_probs=134.9
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
.....+|+++|.-++||||+++++..+.+... .||+|.+.....+ +++.+.+||.+|++.++.+|..|+++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence 44678999999999999999999998888777 9999966654333 378899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
|+|+|.++++.+......+..+..+.. .+.|+++++||.|+.++-++..
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~e------------------------------ 138 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAE------------------------------ 138 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHH------------------------------
Confidence 999999999999999988888888765 7899999999999985533211
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
+.......-.+.....+..++|.+|+|+.+.++++...+..+
T Consensus 139 ------------------i~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 139 ------------------ITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred ------------------HHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhcc
Confidence 111111111112446778999999999999999999987654
No 134
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=2.3e-23 Score=165.51 Aligned_cols=178 Identities=35% Similarity=0.532 Sum_probs=137.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+++|++|||||||+++|..+.+...+.++++..+.........+.+.+.+|||+|+++|..++..+++++++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999999999988888777776666688999999999999999999999999999999
Q ss_pred EeCCC-hhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITN-EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||.++ ..+++....|+..+......+.|+++++||+|+........ .....
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~----------------------------~~~~~ 136 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSE----------------------------EILNQ 136 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHH----------------------------HHHhh
Confidence 99999 55566667899998887756799999999999974321100 00000
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeecc--CCCCHHHHHHHHHHHHHhcc
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAK--ANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~--~~~gi~~l~~~l~~~~~~~~ 225 (253)
.. +. ............. ...++++|++ ++.+++++|..+.+.+....
T Consensus 137 ~~------~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 137 LN------RE-----VVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred hh------cC-----cchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence 00 00 1111222222222 3348999999 99999999999999886543
No 135
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.91 E-value=1.9e-23 Score=164.19 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=111.6
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc--cch------h
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT--ITT------S 77 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~------~ 77 (253)
....++|+|+|++|||||||++++.+..+.....+....+.....+.+.+. ..+.+|||||...... ... .
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 116 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLE 116 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence 355689999999999999999999987643322222122233333433332 3699999999732110 111 1
Q ss_pred hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621 78 YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 157 (253)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (253)
.+..+|++++|+|++++.++.....|...+......++|+++|+||+|+.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~------------------------------ 166 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL------------------------------ 166 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC------------------------------
Confidence 35689999999999999888887777777766554679999999999986
Q ss_pred hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.... . .......+.+++++||+++.|++++++.|...
T Consensus 167 ----------------~~~~-----~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 167 ----------------DDEE-----L-----EERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred ----------------ChHH-----H-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 1111 1 13344456789999999999999999998764
No 136
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=5.8e-24 Score=157.55 Aligned_cols=134 Identities=20% Similarity=0.202 Sum_probs=98.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc-----cccccchhhhcCccEE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE-----RFHTITTSYYRGAMGI 85 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~~ 85 (253)
||+++|++|||||||+++|.+..+. +.++.++++. -.+|||||.. .+..+. ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~~------------~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEYN------------DGAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEEc------------CeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 8999999999999999999977542 3444433332 1689999972 223332 347899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
|+|||++++.++.. ..|...+ ..|+++++||+|+.
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~-------------------------------------- 101 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLA-------------------------------------- 101 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccC--------------------------------------
Confidence 99999999998765 3443321 24999999999985
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHH
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELA 218 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~ 218 (253)
+ .. ...+...++++..+. +++++||++|.|++++|..+.
T Consensus 102 --------~-~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 102 --------E-AD-----VDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred --------C-cc-----cCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 1 11 223445667777775 899999999999999999874
No 137
>KOG1673|consensus
Probab=99.91 E-value=1.9e-23 Score=149.24 Aligned_cols=171 Identities=21% Similarity=0.459 Sum_probs=147.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
.-.+||.++|++..|||||+-++..+.+++.+..+.|+++..+++.+.+.++.+.+||..|++++.++....+.++-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 34689999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|+||++.+.++..+..|+++-+...+..+|+ ++|+|.|+.-+
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~------------------------------------- 139 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFID------------------------------------- 139 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhc-------------------------------------
Confidence 9999999999999999999999888777776 56899997510
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
-+++ ..+-....++.+++-.+.++|++|+....||.++|..+...+.+-
T Consensus 140 -------lp~e--~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 140 -------LPPE--LQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNL 188 (205)
T ss_pred -------CCHH--HHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCC
Confidence 0111 011233456778888899999999999999999999998888764
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.91 E-value=3.4e-23 Score=156.83 Aligned_cols=154 Identities=15% Similarity=0.133 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCC---CCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDA---FNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
+.|+++|.+|||||||+++|.+.. +...+.++...+.....+.+.. ...+.+|||||++.|......++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 478999999999999999998632 3222223333333333344432 457999999999988766667788999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 87 LVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 87 lv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|+++ +.+.+.+. .+. .. ...|+++++||+|+..+..
T Consensus 80 ~V~d~~~~~~~~~~~~~~----~~~-~~-~~~~~ilv~NK~Dl~~~~~-------------------------------- 121 (164)
T cd04171 80 LVVAADEGIMPQTREHLE----ILE-LL-GIKRGLVVLTKADLVDEDW-------------------------------- 121 (164)
T ss_pred EEEECCCCccHhHHHHHH----HHH-Hh-CCCcEEEEEECccccCHHH--------------------------------
Confidence 9999987 33333222 121 11 2249999999999862100
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHH---hCCceEEeeccCCCCHHHHHHHHHH
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIARE---YGVRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
.. ....+..+..+. .+.+++++||+++.|++++++.+.+
T Consensus 122 ------------~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 122 ------------LE-----LVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred ------------HH-----HHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 00 111222333333 3579999999999999999998864
No 139
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.5e-22 Score=168.97 Aligned_cols=162 Identities=11% Similarity=0.099 Sum_probs=114.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----ccccchhh---hcCc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----FHTITTSY---YRGA 82 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---~~~~ 82 (253)
-.|+|||.||||||||+++++..+......|........-.+.+. ....+.+||+||..+ ...+...| +..+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 468999999999999999999765332211111111211223332 334699999999743 22344444 4579
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 83 MGIMLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
+++|+|+|+++.++++.+..|..++..+.. .+.|+++|+||+|+..
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~-------------------------------- 285 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD-------------------------------- 285 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC--------------------------------
Confidence 999999999988889999999999887653 4789999999999862
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
... ......+.+++..+.+++++||++++|++++++.|.+.+..
T Consensus 286 --------------~~~-----~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 286 --------------EEE-----EREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred --------------chh-----HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 111 11222334445566899999999999999999999988765
No 140
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=2e-23 Score=163.70 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=103.7
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc-----------c
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ-----------E 69 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------~ 69 (253)
|-..+....++|+++|.+|||||||+++|.+..+.....+ +.++....+.+. .+.+|||||. +
T Consensus 1 ~~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~ 74 (201)
T PRK04213 1 MFETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQE 74 (201)
T ss_pred CCcccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHH
Confidence 3444556688999999999999999999998776554444 334443444333 5899999993 4
Q ss_pred cccccchhhhc----CccEEEEEEeCCChhhHH----------HHHHHHHHHHHhcccccceeEEeeeeccccccccccc
Q psy9621 70 RFHTITTSYYR----GAMGIMLVYDITNEKSFD----------NILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTI 135 (253)
Q Consensus 70 ~~~~~~~~~~~----~~d~~ilv~d~~~~~s~~----------~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 135 (253)
.+..++..++. .++++++|+|.++...+. .....+..+ ...++|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~p~iiv~NK~Dl~~~------ 145 (201)
T PRK04213 75 KIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFL---RELGIPPIVAVNKMDKIKN------ 145 (201)
T ss_pred HHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHH---HHcCCCeEEEEECccccCc------
Confidence 45444444443 456888888876432210 001112221 1257999999999998511
Q ss_pred cccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---------ceEEeeccC
Q psy9621 136 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---------RFMETSAKA 206 (253)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~ 206 (253)
. .+...++++.+++ +++++||++
T Consensus 146 ----------------------------------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 177 (201)
T PRK04213 146 ----------------------------------------R--------DEVLDEIAERLGLYPPWRQWQDIIAPISAKK 177 (201)
T ss_pred ----------------------------------------H--------HHHHHHHHHHhcCCccccccCCcEEEEeccc
Confidence 1 1123334444443 589999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy9621 207 NINIEKAFIELATAIYD 223 (253)
Q Consensus 207 ~~gi~~l~~~l~~~~~~ 223 (253)
| |+++++++|.+.+..
T Consensus 178 g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 178 G-GIEELKEAIRKRLHE 193 (201)
T ss_pred C-CHHHHHHHHHHhhcC
Confidence 9 999999999987644
No 141
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=5.4e-23 Score=160.37 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=87.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc--CCCCCcc------------cCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD--DAFNTTF------------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI 74 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 74 (253)
..+|+++|++|+|||||+++|.. +.+...+ .++.+.++......+..+...+.+|||||++.|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 35899999999999999999986 4444332 123455555555556666788999999999999999
Q ss_pred chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
...+++++|++++|||+++.. +.....++..+.. .++|+++++||+|+.
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRP 130 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCC
Confidence 999999999999999998742 2222334443332 478999999999986
No 142
>KOG0075|consensus
Probab=99.89 E-value=5.7e-23 Score=145.48 Aligned_cols=155 Identities=22% Similarity=0.389 Sum_probs=130.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+.+.++|..++|||||++.+..+.+.++..|++|+++. .+..+.+.+.+||.+|+..|+.+|..|+++++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 678999999999999999999999999999999996654 3455789999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
+|+.+++.++..+..+..++... -.++|++++|||+|+.++-+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~------------------------------------ 139 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS------------------------------------ 139 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc------------------------------------
Confidence 99999999999887777765543 37899999999999874311
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhC--------CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYG--------VRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
-..+..+.| +..|.+|+++..|++.+.++|++....
T Consensus 140 --------------------~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 140 --------------------KIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred --------------------HHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 122223332 567999999999999999999886543
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.89 E-value=5e-22 Score=149.56 Aligned_cols=148 Identities=18% Similarity=0.157 Sum_probs=107.9
Q ss_pred EEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc------chhhhc--CccEE
Q psy9621 14 LIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI------TTSYYR--GAMGI 85 (253)
Q Consensus 14 vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~~--~~d~~ 85 (253)
|+|++|+|||||++++.+..+.....+....+.....+.+++ ..+.+|||||+..+... +..++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765544445444444445555554 46999999999876643 445554 99999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
|+|+|++++.... .+...+.. .++|+++++||+|+..
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~------------------------------------- 115 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAE------------------------------------- 115 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcc-------------------------------------
Confidence 9999998865432 34333332 4689999999999862
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
... +. .....+++.++++++++||.++.|++++++.|.+..
T Consensus 116 ---------~~~-----~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 116 ---------KRG-----IK-IDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ---------ccc-----ch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 111 11 223566777789999999999999999999998763
No 144
>KOG0071|consensus
Probab=99.89 E-value=8.9e-23 Score=143.41 Aligned_cols=162 Identities=22% Similarity=0.373 Sum_probs=128.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
.+++|+++|..++||||++.++..+..... .||+|++.... ..+++.+.+||.+|++..+.+|+.|+.+.-++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~-ipTvGFnvetV----tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETV----TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccc-ccccceeEEEE----EeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 478999999999999999999998765544 78888665533 3367899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|+|..+++.++..+..+..+.++.+ .+.|++|.+||.|+.++.++.++.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d----------------------------- 141 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQD----------------------------- 141 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHH-----------------------------
Confidence 9999999999999877777766543 7899999999999986654311110
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
..+.+. ++....-+.+++|.+|.|+.+-|.+|.....
T Consensus 142 ------------------~leLe~-~r~~~W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 142 ------------------KLELER-IRDRNWYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred ------------------Hhcccc-ccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence 111111 3333466789999999999999999987653
No 145
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=2.4e-22 Score=144.30 Aligned_cols=114 Identities=30% Similarity=0.631 Sum_probs=89.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCC--CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFN--TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
||+|+|++|||||||+++|.+..+. ..+.+..+.++.............+.+||++|++.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988776 22233444455555666777777799999999999988888889999999999
Q ss_pred EeCCChhhHHHHHH---HHHHHHHhcccccceeEEeeeec
Q psy9621 89 YDITNEKSFDNILK---WLRNIDEHANEDVEKMILGKTKD 125 (253)
Q Consensus 89 ~d~~~~~s~~~~~~---~~~~i~~~~~~~~p~iiv~nK~D 125 (253)
||++++.+++.+.. |+..+.... .++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 99999999999854 555555544 5699999999998
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.89 E-value=3.2e-22 Score=152.22 Aligned_cols=162 Identities=16% Similarity=0.106 Sum_probs=107.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
.|+|+|++|+|||||+++|....+.....+....+.....+... .....+.+|||||+..|..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999877766533333323322233332 13567999999999998888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
|+++....... ..+..+.. .++|+++++||+|+.... .+.+......+
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~---------------------------~~~~~~~~~~~- 129 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNAN---------------------------PERVKNELSEL- 129 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceeccccc---------------------------HHHHHHHHHHh-
Confidence 99875322211 11222222 478999999999986210 00000000000
Q ss_pred hhcCCCchhhhhhccchhHHHH--HHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAI--AREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.... .....++++++||++|.|+++++++|.+...
T Consensus 130 ------------------~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 130 ------------------GLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ------------------hccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 0000 0012368999999999999999999987653
No 147
>KOG0096|consensus
Probab=99.89 E-value=1.1e-22 Score=150.23 Aligned_cols=170 Identities=28% Similarity=0.536 Sum_probs=146.7
Q ss_pred CCccccC-ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhh
Q psy9621 1 MAKKTYD-FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYY 79 (253)
Q Consensus 1 m~~~~~~-~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 79 (253)
|...+.+ .++|++++|+-|.||||++.+.+.+.|...+.+++|++..+....-+.+.+++..|||.|++.+..+...++
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy 80 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY 80 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence 5555444 799999999999999999999999999999999999999887776666679999999999999999999999
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621 80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159 (253)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (253)
-+.-.+||+||++.+.++.++.+|...+.+.+ .++||++.|||.|...
T Consensus 81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~------------------------------- 128 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKA------------------------------- 128 (216)
T ss_pred EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccc-------------------------------
Confidence 99999999999999999999999999998888 5699999999999852
Q ss_pred hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
+. .....-.+-+..++.+++.||+++.|++.-|-++.+.+...
T Consensus 129 ----------------r~------~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 129 ----------------RK------VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGD 171 (216)
T ss_pred ----------------cc------cccccceeeecccceeEEeecccccccccchHHHhhhhcCC
Confidence 21 11222334456678999999999999999999999988654
No 148
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.89 E-value=1.2e-21 Score=145.63 Aligned_cols=153 Identities=46% Similarity=0.792 Sum_probs=119.4
Q ss_pred EEcCCCCcHHHHHHHhhcCCC-CCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCC
Q psy9621 14 LIGDSGVGKTCVLFRFSDDAF-NTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT 92 (253)
Q Consensus 14 vvG~~~~GKStL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 92 (253)
|+|++|+|||||++++.+... .....++. .++.............+.+||+||...+......+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998777 45545555 6676666766677889999999999888877788899999999999999
Q ss_pred ChhhHHHHHHHH-HHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhh
Q psy9621 93 NEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 171 (253)
Q Consensus 93 ~~~s~~~~~~~~-~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (253)
++.++.....|. .........+.|+++++||+|+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~------------------------------------------ 117 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE------------------------------------------ 117 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc------------------------------------------
Confidence 999999888773 2223334478999999999998621
Q ss_pred cCCCchhhhhhccch-hHHHHHHHhCCceEEeeccCCCCHHHHHHHHH
Q psy9621 172 ANEDPQVVNSWVCKH-RGEAIAREYGVRFMETSAKANINIEKAFIELA 218 (253)
Q Consensus 172 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 218 (253)
.. .... ...........+++++|+.++.|+++++++|.
T Consensus 118 ----~~-----~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 118 ----RV-----VSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred ----cc-----hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 11 1111 13344455568999999999999999999875
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=7.1e-22 Score=173.21 Aligned_cols=178 Identities=16% Similarity=0.160 Sum_probs=116.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCccc--------ccccchhhh
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER--------FHTITTSYY 79 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~ 79 (253)
..+|+|+|.+|||||||+++|.+..... ...+.+..+.....+...+ ..+.+|||||.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 4699999999999999999999866432 2233332233333334443 4589999999763 233345578
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621 80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159 (253)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (253)
+.+|++|+|||+++..++.. ..+...+.. .++|+++|+||+|+..
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~------------------------------- 160 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDER------------------------------- 160 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCc-------------------------------
Confidence 89999999999998766543 234343332 4799999999999851
Q ss_pred hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEee
Q psy9621 160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTI 239 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (253)
.. .+..+.+....+ ..+++||++|.|++++|+.|...+..............++.+
T Consensus 161 ---------------~~--------~~~~~~~~~g~~-~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~i 216 (472)
T PRK03003 161 ---------------GE--------ADAAALWSLGLG-EPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVAL 216 (472)
T ss_pred ---------------cc--------hhhHHHHhcCCC-CeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEE
Confidence 10 011111122222 347999999999999999999988653222211223456666
Q ss_pred cCCCCCCC
Q psy9621 240 DKKPDRGG 247 (253)
Q Consensus 240 ~~~~~~~~ 247 (253)
-..++-||
T Consensus 217 iG~~nvGK 224 (472)
T PRK03003 217 VGKPNVGK 224 (472)
T ss_pred ECCCCCCH
Confidence 66666664
No 150
>KOG3883|consensus
Probab=99.88 E-value=4.1e-21 Score=137.05 Aligned_cols=174 Identities=22% Similarity=0.302 Sum_probs=141.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCC--cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc-cccchhhhcCcc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT--TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF-HTITTSYYRGAM 83 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~d 83 (253)
..-.||+|.|..++|||+++.+++.++-.+ .+.||+.-.|....-+.++-.-.+.++||.|...+ ..+-+.|+.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 456799999999999999999999766543 46677764454443344455567999999998877 667788999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
++++||+..+++||+.+.-+...|.++.. +.+|+++++||+|++
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~----------------------------------- 131 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA----------------------------------- 131 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc-----------------------------------
Confidence 99999999999999999877777777653 789999999999998
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCC
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPL 231 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~ 231 (253)
++.+ +..+.+..||++-.+.+++|+|.+-..+-+-|..+...+...+..+.-+
T Consensus 132 -----------~p~~-----vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883|consen 132 -----------EPRE-----VDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQPQSKSTFP 184 (198)
T ss_pred -----------cchh-----cCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCCcccccCc
Confidence 4555 7778889999999999999999999999999998888776655444433
No 151
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=1.4e-21 Score=144.67 Aligned_cols=148 Identities=16% Similarity=0.208 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc------ccchhhh--cC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH------TITTSYY--RG 81 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~--~~ 81 (253)
|+|+++|.||||||||+|++.+.+......|...++...-.+.+.+ ..+.++|+||-.... .....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999876544445444455444555554 669999999953332 2223333 68
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621 82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 161 (253)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
.|++|.|+|+++.+.- .+...++. +.++|+++++||+|.+..
T Consensus 79 ~D~ii~VvDa~~l~r~---l~l~~ql~---e~g~P~vvvlN~~D~a~~-------------------------------- 120 (156)
T PF02421_consen 79 PDLIIVVVDATNLERN---LYLTLQLL---ELGIPVVVVLNKMDEAER-------------------------------- 120 (156)
T ss_dssp SSEEEEEEEGGGHHHH---HHHHHHHH---HTTSSEEEEEETHHHHHH--------------------------------
T ss_pred CCEEEEECCCCCHHHH---HHHHHHHH---HcCCCEEEEEeCHHHHHH--------------------------------
Confidence 9999999999875422 22323333 357999999999998722
Q ss_pred HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHH
Q psy9621 162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIEL 217 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 217 (253)
. -..-....+.+.+|+|++.+||+++.|+++|++.|
T Consensus 121 --------------~------g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 121 --------------K------GIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp --------------T------TEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred --------------c------CCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 1 11224678889999999999999999999999865
No 152
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.88 E-value=1.5e-21 Score=164.24 Aligned_cols=156 Identities=18% Similarity=0.193 Sum_probs=108.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc--ccccc------hhh
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER--FHTIT------TSY 78 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~------~~~ 78 (253)
+..++|+++|.+|||||||+|+|.+..+.....+....+.....+.+.+ ...+.+|||+|... ...+. ...
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tle~ 265 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATLEE 265 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 3458999999999999999999998764332222112344445565543 24689999999722 11111 124
Q ss_pred hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
+.++|++++|+|++++.+++.+..|...+......+.|+++|+||+|+.
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~------------------------------- 314 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL------------------------------- 314 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC-------------------------------
Confidence 7899999999999999888777666665555444578999999999986
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.... + .... ....+++++||++|.|++++++.|...
T Consensus 315 ---------------~~~~-----v-----~~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 315 ---------------DEPR-----I-----ERLE-EGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ---------------ChHh-----H-----HHHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 1111 1 0111 112468999999999999999998754
No 153
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.88 E-value=2.6e-21 Score=161.44 Aligned_cols=159 Identities=11% Similarity=0.111 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc----cccchhhhc---Cc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF----HTITTSYYR---GA 82 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~~~~~---~~ 82 (253)
-.|+|+|.+|||||||++++..........|........-.+.+. ....+.+||+||..+. ..+...+++ .+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 468999999999999999999765322111111111111223333 2367999999997532 244445544 69
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621 83 MGIMLVYDITNE---KSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 157 (253)
Q Consensus 83 d~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (253)
+++++|+|+++. ++++.+..|.+++..+.. .+.|++||+||+|+..
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~----------------------------- 287 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD----------------------------- 287 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC-----------------------------
Confidence 999999999987 678888888888776642 4789999999999861
Q ss_pred hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
.. ......+.+++..+.+++++||++++|++++++.|.+.+
T Consensus 288 -----------------~~------~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 288 -----------------EE------ELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred -----------------hH------HHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 11 112234455666678999999999999999999998754
No 154
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=1.9e-21 Score=173.69 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=117.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCC-------CCCcccC------ccceeeEEEEEee-----CCeEEEEEEEeCCCcc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDA-------FNTTFIS------TIGIDFKIKTVDL-----KGKKIKLQIWDTAGQE 69 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~ 69 (253)
...|++++|+.++|||||+++|+... +...+.. ..|+++....+.+ ++..+.+++|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 46799999999999999999998632 2222222 2355555444433 3556889999999999
Q ss_pred cccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEE
Q psy9621 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV 149 (253)
Q Consensus 70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (253)
.|...+..+++.+|++|+|||+++..+......|...+. .++|+++++||+|+...
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~-------------------- 137 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSA-------------------- 137 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCcc--------------------
Confidence 999889999999999999999998777766666654432 46899999999998511
Q ss_pred EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.......++.+.+++ .++++||++|.|++++|+.|.+.+..
T Consensus 138 ---------------------------------~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 138 ---------------------------------DPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred ---------------------------------CHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 001112344444554 48999999999999999999987754
No 155
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=4.1e-21 Score=157.04 Aligned_cols=155 Identities=14% Similarity=0.076 Sum_probs=103.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCccc--CccceeeEEEEEeeCCeEEEEEEEeCCCcccccc-c-------chhhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFI--STIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT-I-------TTSYYR 80 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~-------~~~~~~ 80 (253)
+|+++|.+|||||||+|+|.+..+..... .|.. + ....+... ...++.+|||||...... + ...++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~-~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-N-RISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-C-cEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999876543211 1211 1 11122222 335699999999754321 1 234578
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
++|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~--------------------------------- 120 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNK--------------------------------- 120 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCC---------------------------------
Confidence 999999999999876654 334443332 468999999999985
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.... .......++...+. +++++||++|.|++++++.|...+....
T Consensus 121 -------------~~~~------~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 121 -------------FKDK------LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred -------------CHHH------HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence 1111 11122333444443 8899999999999999999988775533
No 156
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=4e-21 Score=148.84 Aligned_cols=172 Identities=17% Similarity=0.200 Sum_probs=111.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCcc--------------ceeeEEEEEeeCCeEEEEEEEeCCCcccccccch
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTI--------------GIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITT 76 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 76 (253)
+|+|+|.+|+|||||++++..........+.. +.+..............+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999998776654432211 1222222222333356799999999998888888
Q ss_pred hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621 77 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK 156 (253)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (253)
.+++.+|++++|+|++++.+... ..++..+.. .+.|+++++||+|+..+ +
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~--------------------------~ 130 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGE--------------------------E 130 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcch--------------------------h
Confidence 89999999999999987654433 233333322 57999999999998621 1
Q ss_pred chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
.+.....+..+...... ........+......+++++||++|.|+++++..|.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 131 DLEEVLREIKELLGLIG---------FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cHHHHHHHHHHHHcccc---------ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 11222221111111000 000011122223458999999999999999999998875
No 157
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.87 E-value=6.4e-21 Score=143.13 Aligned_cols=146 Identities=17% Similarity=0.200 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc--------chhhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI--------TTSYYR 80 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~ 80 (253)
++|+++|++|+|||||++++.+..... ...+....+.....+... ...+.+|||||...+... ...++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999765422 212222223332333333 456899999998665332 224667
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
.+|++++|+|++++.+......+.. ..+.|+++++||+|+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~--------------------------------- 120 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLL--------------------------------- 120 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcC---------------------------------
Confidence 9999999999998877776554433 2579999999999986
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
.... . .....+.+++++||+++.|+++++++|...+
T Consensus 121 -------------~~~~-----~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 121 -------------PDSE-----L-------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -------------Cccc-----c-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 1111 1 2344467999999999999999999988754
No 158
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.3e-20 Score=161.21 Aligned_cols=159 Identities=13% Similarity=0.160 Sum_probs=112.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----ccccchhhh---cCcc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----FHTITTSYY---RGAM 83 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~---~~~d 83 (253)
.|+|+|.||||||||++++++.+......|....+...-.+.+. ....+.+||+||..+ ...+...|+ ..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 79999999999999999999765332111111111111122222 145699999999743 334445554 4589
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 84 GIMLVYDITNE---KSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 84 ~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
++|+|+|+++. ++++....|.+++..+.. .+.|++||+||+|+.
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~------------------------------- 287 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP------------------------------- 287 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc-------------------------------
Confidence 99999999865 677888888888877643 479999999999974
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
. .....+.+.+.++.+++++||+++.|++++++.|.+.+....
T Consensus 288 ---------------~---------~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 288 ---------------E---------AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred ---------------C---------CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 1 112335556666688999999999999999999998886643
No 159
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.86 E-value=1.9e-21 Score=146.54 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc----cchhhhcCccEEE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT----ITTSYYRGAMGIM 86 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~d~~i 86 (253)
+|+++|.+|+|||||++++.+.. ... .++.++ .+... .+|||||...... .....++++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~-~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLA-RKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccC-ccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999987542 211 222222 22222 2699999732211 1123468999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
+|+|+++..++. ..|+..+ ..+.|+++++||+|+.
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~--------------------------------------- 104 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMP--------------------------------------- 104 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccC---------------------------------------
Confidence 999999887653 2344433 2467999999999985
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCC--ceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGV--RFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
. ...+...+++++.++ |++++||++|.|++++|+.+.+.+.+...
T Consensus 105 -------~--------~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 151 (158)
T PRK15467 105 -------D--------ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQEEA 151 (158)
T ss_pred -------c--------ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhhhc
Confidence 1 112334566667774 99999999999999999999887765443
No 160
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.86 E-value=1.3e-20 Score=162.90 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=113.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc--------chh
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI--------TTS 77 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~ 77 (253)
...+||+++|++|||||||+|+|.+.... ....+....++....+.+++ ..+.+|||||..++... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 35689999999999999999999976432 22223333455555565654 45799999998655432 235
Q ss_pred hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621 78 YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 157 (253)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (253)
+++.+|++++|||++++.+++.. |+..+.. .+.|+++|+||+|+.
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~------------------------------ 323 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLK------------------------------ 323 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCC------------------------------
Confidence 77899999999999998887765 6655532 468999999999985
Q ss_pred hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.. ....+++.++.+++++||++ .||+++|+.|.+.+.+.-
T Consensus 324 ----------------~~-----------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 324 ----------------IN-----------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred ----------------Cc-----------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 11 12344566778899999998 599999999999887643
No 161
>PRK15494 era GTPase Era; Provisional
Probab=99.86 E-value=7.1e-21 Score=159.89 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=105.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccce--eeEEEEEeeCCeEEEEEEEeCCCccc-ccccch-------
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGI--DFKIKTVDLKGKKIKLQIWDTAGQER-FHTITT------- 76 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~------- 76 (253)
...++|+++|.+|||||||+++|.+..+... .+..+. +.....+..+ ..++.+|||||..+ +..+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~iv-s~k~~tTr~~~~~~~~~~--~~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIV-TPKVQTTRSIITGIITLK--DTQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeec-cCCCCCccCcEEEEEEeC--CeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 4567999999999999999999998776432 222222 2222233333 35689999999853 222221
Q ss_pred hhhcCccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621 77 SYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE 155 (253)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (253)
..+.++|++++|+|.++ ++.... .|+..+.. .+.|.++++||+|+..
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~--------------------------- 174 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIES--------------------------- 174 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCcc---------------------------
Confidence 24679999999999765 344443 34444433 3467789999999851
Q ss_pred cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
. . .....+++...+ ..+|++||++|.|++++|++|...+.....
T Consensus 175 -------------------~-------~-~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~ 220 (339)
T PRK15494 175 -------------------K-------Y-LNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPW 220 (339)
T ss_pred -------------------c-------c-HHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCC
Confidence 1 0 112333333333 579999999999999999999887766443
No 162
>KOG4423|consensus
Probab=99.86 E-value=1.2e-23 Score=154.84 Aligned_cols=171 Identities=35% Similarity=0.609 Sum_probs=147.4
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCe-EEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK-KIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
..+..+|++|+|..|+|||+++.+++...+...|+.++|+++.-+.+..+.+ .+++++||..|+++|..+...+++.+.
T Consensus 21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 3578899999999999999999999998899999999999999887777654 467899999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhc----ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHA----NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (253)
+..+|||+++..+|+....|.+.+.... +..+|+++..||+|...
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~------------------------------- 149 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK------------------------------- 149 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh-------------------------------
Confidence 9999999999999999999999986553 36789999999999861
Q ss_pred hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
... .-......++++++|+ .++++|++.+.+++++-..++.++..+.
T Consensus 150 ---------------~a~----~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 150 ---------------SAK----NEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred ---------------Hhh----hhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhc
Confidence 110 0123456788899995 8999999999999999999999887765
No 163
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.86 E-value=1e-20 Score=147.60 Aligned_cols=167 Identities=14% Similarity=0.133 Sum_probs=109.9
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc----------c
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE----------R 70 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~ 70 (253)
|.+.+.+..++|+++|++|+|||||++++.+..+...+.++.+.+........ ...+.+|||||.. .
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~ 92 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEK 92 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHH
Confidence 44567788999999999999999999999987655555556554443332222 3679999999952 3
Q ss_pred ccccchhhhcCc---cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeE
Q psy9621 71 FHTITTSYYRGA---MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM 147 (253)
Q Consensus 71 ~~~~~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (253)
+..+...+++.+ +++++++|.+++.+.... .+...+ .. .++|+++++||+|+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l-~~--~~~~~iiv~nK~Dl~~------------------- 149 (196)
T PRK00454 93 WQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWL-KE--YGIPVLIVLTKADKLK------------------- 149 (196)
T ss_pred HHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHH-HH--cCCcEEEEEECcccCC-------------------
Confidence 333444455544 678888898876443321 111122 22 4789999999999851
Q ss_pred EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 148 LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..+.. ...............+++++||+++.|++++++.|...+.+
T Consensus 150 ---------------------------~~~~~---~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 150 ---------------------------KGERK---KQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred ---------------------------HHHHH---HHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 11100 11112233333336789999999999999999999877643
No 164
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.86 E-value=3.2e-21 Score=147.72 Aligned_cols=153 Identities=15% Similarity=0.187 Sum_probs=103.6
Q ss_pred EEcCCCCcHHHHHHHhhcCCCC-Ccc-cCccceeeEEEEEeeCCeEEEEEEEeCCCccc----ccccc---hhhhcCccE
Q psy9621 14 LIGDSGVGKTCVLFRFSDDAFN-TTF-ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----FHTIT---TSYYRGAMG 84 (253)
Q Consensus 14 vvG~~~~GKStL~~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~---~~~~~~~d~ 84 (253)
++|++|||||||++++.+.... ..+ ..|....+ ..+.+. ....+.+|||||... ...+. ...++++|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNL--GVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcc--eEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 5899999999999999987541 111 11222111 222233 145689999999732 22232 234678999
Q ss_pred EEEEEeCCCh------hhHHHHHHHHHHHHHhcc-------cccceeEEeeeeccccccccccccccccccceeeEEEEe
Q psy9621 85 IMLVYDITNE------KSFDNILKWLRNIDEHAN-------EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYD 151 (253)
Q Consensus 85 ~ilv~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (253)
+++|+|++++ .++.....|...+..... .+.|+++++||+|+...
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~---------------------- 135 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA---------------------- 135 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch----------------------
Confidence 9999999988 578887777777765432 47999999999998621
Q ss_pred ccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 152 ITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.. .............+.+++++||+++.|++++++.+...
T Consensus 136 ------------------------~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 136 ------------------------EE-----LEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ------------------------hH-----HHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 11 11111223344456789999999999999999998764
No 165
>PRK11058 GTPase HflX; Provisional
Probab=99.86 E-value=1.5e-20 Score=161.72 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc--cccch------hhhcC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF--HTITT------SYYRG 81 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~------~~~~~ 81 (253)
.+|+++|.+|||||||+|+|.+........+....+.....+.+.+. ..+.+|||+|.... ..++. ..++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999986654322222233444444555432 25789999997432 22222 23588
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621 82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 161 (253)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
+|++|+|+|++++.+++.+..|...+......++|+++|+||+|+.
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~---------------------------------- 322 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML---------------------------------- 322 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC----------------------------------
Confidence 9999999999999888877655554444444579999999999985
Q ss_pred HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCc-eEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVR-FMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.... . ... ....+.+ ++++||++|.|++++++.|...+..
T Consensus 323 ------------~~~~------~--~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 323 ------------DDFE------P--RID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred ------------Cchh------H--HHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 1100 0 000 0123444 4899999999999999999998754
No 166
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.86 E-value=5.8e-21 Score=148.64 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcC----CCCCcc---c--CccceeeEEEEEe----------eCCeEEEEEEEeCCCccc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDD----AFNTTF---I--STIGIDFKIKTVD----------LKGKKIKLQIWDTAGQER 70 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~----~~~~~~---~--~~~~~~~~~~~~~----------~~~~~~~~~l~Dt~G~~~ 70 (253)
+||+++|++|+|||||+++|... .+...+ . .|.+..+....+. .......+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 121111 1 2333333333332 123357899999999865
Q ss_pred ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEE
Q psy9621 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVY 150 (253)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (253)
+..........+|++++|+|+++.........+. +... .+.|+++++||+|+.....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~------------------- 137 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEE------------------- 137 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHH-------------------
Confidence 5333334456789999999998754433332222 1122 3679999999999852100
Q ss_pred eccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHH-HHHH------HhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 151 DITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE-AIAR------EYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.. ...++.. .+.+ ..+++++++||++|.|++++++.|...+.
T Consensus 138 -------------------------~~-----~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 138 -------------------------RE-----RKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred -------------------------HH-----HHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 00 0001111 1111 23579999999999999999999988765
No 167
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.86 E-value=1.7e-20 Score=166.80 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=109.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
...+|+++|+.++|||||+++|.+..+.....+.+..+.....+.+.+. ..+.+|||||++.|..++...+..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 3478999999999999999999988776654443333343344444332 268999999999999999889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
|+|+++...-+.... +......++|+++++||+|+.+. ..+.+..++.+
T Consensus 165 VVda~dgv~~qT~e~----i~~~~~~~vPiIVviNKiDl~~~---------------------------~~e~v~~~L~~ 213 (587)
T TIGR00487 165 VVAADDGVMPQTIEA----ISHAKAANVPIIVAINKIDKPEA---------------------------NPDRVKQELSE 213 (587)
T ss_pred EEECCCCCCHhHHHH----HHHHHHcCCCEEEEEECcccccC---------------------------CHHHHHHHHHH
Confidence 999987432222211 12222257999999999998521 01111111110
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHH
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
. ......++ .+++++||++|.|++++|+.|...
T Consensus 214 ~--------------------g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 214 Y--------------------GLVPEDWGGDTIFVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred h--------------------hhhHHhcCCCceEEEEECCCCCChHHHHHhhhhh
Confidence 0 00112222 589999999999999999998753
No 168
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1.1e-20 Score=165.63 Aligned_cols=165 Identities=17% Similarity=0.160 Sum_probs=111.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc----------cccccc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE----------RFHTIT 75 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 75 (253)
+..+||+++|.+|||||||+++|++.... ....+....+.....+.+++. .+.+|||||.. .|..++
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 34689999999999999999999987642 233333334444455556554 46899999953 222222
Q ss_pred -hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 76 -TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 76 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
..+++.+|++|+|+|++++.++..+. ++..+.. .++|+++|+||+|+...
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~------------------------- 337 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDE------------------------- 337 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCh-------------------------
Confidence 23578999999999999988877764 3444332 57999999999998611
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
... .....+....+......+++++||++|.|++++|..+.+.+....
T Consensus 338 ---------------------~~~--~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 338 ---------------------DRR--YYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred ---------------------hHH--HHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 000 001111111222222368999999999999999999998875443
No 169
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.86 E-value=5.2e-21 Score=153.01 Aligned_cols=201 Identities=14% Similarity=0.107 Sum_probs=124.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCC--------C-----cc---cCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFN--------T-----TF---ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI 74 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 74 (253)
||+++|+.|+|||||+++|+...-. . .+ ....+++.......+.....++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 6899999999999999999753110 0 00 012233344444445556678999999999999888
Q ss_pred chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc---cccccccccccceeeEEEEe
Q psy9621 75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER---FHTITTSYYRGAMGIMLVYD 151 (253)
Q Consensus 75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~ 151 (253)
...+++.+|++|+|+|+++.... ....++..+.. .++|+++++||+|+.+.+. .+.+++.+-.. .+.++.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~--~~~~~~p 154 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSD--IVPMQKV 154 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccCCCHHHHHHHHHHHHCCC--eEEEECC
Confidence 88899999999999999886543 23344444433 4789999999999986542 23333322221 1112111
Q ss_pred c----------cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHH-----HHHHHhCCceEEeeccCCCCHHHHHHH
Q psy9621 152 I----------TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE-----AIAREYGVRFMETSAKANINIEKAFIE 216 (253)
Q Consensus 152 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 216 (253)
. ...+..+.+.++-+++.+.+.+..+ +..++.. .+....-+|+|..||.++.|++.|++.
T Consensus 155 ~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~-----~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~ 229 (237)
T cd04168 155 GLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGP-----IEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEG 229 (237)
T ss_pred cEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCC-----CCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHH
Confidence 1 1123333333333333333333333 3322222 222222379999999999999999999
Q ss_pred HHHHHH
Q psy9621 217 LATAIY 222 (253)
Q Consensus 217 l~~~~~ 222 (253)
+.+.+.
T Consensus 230 ~~~~~p 235 (237)
T cd04168 230 ITKLFP 235 (237)
T ss_pred HHHhcC
Confidence 988764
No 170
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=1.2e-20 Score=141.69 Aligned_cols=146 Identities=14% Similarity=0.095 Sum_probs=97.4
Q ss_pred EEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc--------cchhhhcCcc
Q psy9621 13 LLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT--------ITTSYYRGAM 83 (253)
Q Consensus 13 ~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d 83 (253)
+++|.+|+|||||++++.+..... ...+....+......... ...+.+|||||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 489999999999999999764221 111221222222333333 35699999999987543 2345678899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++++|+|..++.+.... ...+.+.. .+.|+++++||+|+.
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~------------------------------------ 118 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNI------------------------------------ 118 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccC------------------------------------
Confidence 99999999876544332 12222222 359999999999986
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHH
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.... . .......+. +++++|++++.|++++|++|.+.
T Consensus 119 ----------~~~~-----~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 119 ----------KEED-----E-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ----------ChHH-----H-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 1111 1 222334555 78999999999999999999865
No 171
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.85 E-value=2.8e-20 Score=161.67 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=109.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc--------hhh
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT--------TSY 78 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 78 (253)
..++|+++|.+|+|||||+|+|.+.... ....+....++....+.+++ ..+.+|||||..++.... ..+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3579999999999999999999986542 22223223344444555544 468999999987654322 236
Q ss_pred hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
+..+|++++|||++++.+++....|.. ..+.|+++|+||+|+.
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~------------------------------- 334 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLT------------------------------- 334 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhcc-------------------------------
Confidence 789999999999999888776544433 2578999999999986
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.... .. ...+.+++++||++|.|++++++.|.+.+..
T Consensus 335 ---------------~~~~-----~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 335 ---------------GEID-----LE--------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred ---------------ccch-----hh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 1111 10 2335688999999999999999999998764
No 172
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.84 E-value=4.7e-20 Score=149.84 Aligned_cols=210 Identities=13% Similarity=0.108 Sum_probs=123.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCC--CC---------------ccc---CccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAF--NT---------------TFI---STIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~--~~---------------~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (253)
..+|+++|++|+|||||+++|+...- .. .+. ...++++......+..+...+.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 46899999999999999999974211 10 000 01133444455556666788999999999
Q ss_pred ccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc---ccccccccccccee
Q psy9621 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER---FHTITTSYYRGAMG 145 (253)
Q Consensus 69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~ 145 (253)
.+|......+++.+|++|+|+|+++..... ...+++... ..++|+++++||+|+.+... .+++++.+-.....
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~---~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~ 157 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCR---LRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTP 157 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHH---hcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCcee
Confidence 988877777889999999999998753322 223333222 24799999999999876643 23333321110000
Q ss_pred -------------e-------EEEEecc-----------CccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH
Q psy9621 146 -------------I-------MLVYDIT-----------NEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE 194 (253)
Q Consensus 146 -------------~-------~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (253)
+ ...|... ..+..+.+.+..+++.+.+.+..+...........+.+...
T Consensus 158 ~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~~~~~~~~~~~~~~~~~~~~ 237 (267)
T cd04169 158 LTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLREELELLEGAGPEFDQEAFLAG 237 (267)
T ss_pred EEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHhCCCccchhhhHHHhHHHHHcC
Confidence 0 0112000 11222334333344443333322211111111111222222
Q ss_pred hCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 195 YGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 195 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.-+|++..||.++.|++.|++.|...+.
T Consensus 238 ~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P 265 (267)
T cd04169 238 ELTPVFFGSALNNFGVQELLDALVDLAP 265 (267)
T ss_pred CEEEEEecccccCcCHHHHHHHHHHHCC
Confidence 2379999999999999999999988764
No 173
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.84 E-value=2e-20 Score=143.97 Aligned_cols=118 Identities=17% Similarity=0.237 Sum_probs=81.1
Q ss_pred ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc----------ccc
Q psy9621 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE----------RFH 72 (253)
Q Consensus 3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~ 72 (253)
+.+.+..++|+++|++|+|||||++++.+..+...+.++.+.+........+. .+.+|||||.. .+.
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence 45668889999999999999999999998764444445555444433333332 58999999953 233
Q ss_pred ccchhhhc---CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 73 TITTSYYR---GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 73 ~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.+...+++ .++++++|+|++++.+.... .++..+.. .++|+++++||+|+.
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~ 142 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKL 142 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccC
Confidence 33344554 35799999999876554443 22233322 478999999999985
No 174
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.84 E-value=4e-20 Score=144.91 Aligned_cols=120 Identities=19% Similarity=0.335 Sum_probs=91.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCc-cEEEEEE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGA-MGIMLVY 89 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~~ilv~ 89 (253)
+|+++|++|||||||+++|..+.+...+.++ ..+..............+.+||+||+..+......+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998776665443 2222222221123456799999999999988888889998 9999999
Q ss_pred eCCCh-hhHHHHHHHHHHHHHhc---ccccceeEEeeeeccccccc
Q psy9621 90 DITNE-KSFDNILKWLRNIDEHA---NEDVEKMILGKTKDTAGQER 131 (253)
Q Consensus 90 d~~~~-~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~ 131 (253)
|+++. .++..+..|+..++... ..++|+++++||+|+..+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 99997 67777777766654432 26899999999999975443
No 175
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.84 E-value=7.8e-20 Score=163.23 Aligned_cols=172 Identities=19% Similarity=0.239 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcC---CCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDD---AFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
+.|+++|++++|||||+++|.+. .++....+++.++.....+..++ ..+.+||+||++.|.......+.++|++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 47999999999999999999863 33444455555555555555554 67999999999999877777889999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 87 LVYDITN---EKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 87 lv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
+|+|+++ +.+++.+. .+ .. .++| +++++||+|+..+.. ++
T Consensus 79 LVVDa~~G~~~qT~ehl~----il-~~--lgi~~iIVVlNK~Dlv~~~~--------------------------~~--- 122 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VL-DL--LGIPHTIVVITKADRVNEEE--------------------------IK--- 122 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HH-HH--cCCCeEEEEEECCCCCCHHH--------------------------HH---
Confidence 9999998 34443332 12 11 3678 999999999862100 00
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHHh----CCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEe
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY----GVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVT 238 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (253)
....+..++.+.. +++++++||++|.|+++++..|...+...... ....+-++.
T Consensus 123 --------------------~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~--~~~~p~r~~ 180 (581)
T TIGR00475 123 --------------------RTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIK--RIQKPLRMA 180 (581)
T ss_pred --------------------HHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCc--CcCCCcEEE
Confidence 1122334444443 47899999999999999999998776654332 123455555
Q ss_pred ecC
Q psy9621 239 IDK 241 (253)
Q Consensus 239 ~~~ 241 (253)
|+.
T Consensus 181 Id~ 183 (581)
T TIGR00475 181 IDR 183 (581)
T ss_pred EEE
Confidence 554
No 176
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=5.6e-20 Score=165.89 Aligned_cols=163 Identities=17% Similarity=0.158 Sum_probs=111.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccce--eeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGI--DFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
...+|+|+|+.++|||||+++|....+.....+.+.. ..+...+...+....+.+|||||++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 4579999999999999999999987665443332221 22222333334567899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
|+|+|+++.........+ ......++|+++++||+|+... .++.+..++
T Consensus 323 ILVVDA~dGv~~QT~E~I----~~~k~~~iPiIVViNKiDl~~~---------------------------~~e~v~~eL 371 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAI----NYIQAANVPIIVAINKIDKANA---------------------------NTERIKQQL 371 (742)
T ss_pred EEEEECcCCCChhhHHHH----HHHHhcCceEEEEEECCCcccc---------------------------CHHHHHHHH
Confidence 999999874322222222 1112357999999999998621 111111111
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
... ..+...++ ++++++||++|.|+++|++.|....
T Consensus 372 ~~~--------------------~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 372 AKY--------------------NLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HHh--------------------ccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 100 00122333 7999999999999999999998764
No 177
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.84 E-value=3.3e-20 Score=145.50 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCC---CcccCc--cceeeEEEEEe-------------------e----C--C----
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFN---TTFIST--IGIDFKIKTVD-------------------L----K--G---- 55 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~---~~~~~~--~~~~~~~~~~~-------------------~----~--~---- 55 (253)
++|+++|+.|+|||||+..+.....+ ...... +...+...... . . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 58999999999999999999654211 111111 11111111100 0 0 0
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccc
Q psy9621 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTI 135 (253)
Q Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 135 (253)
....+.+|||||++.|.......+..+|++++|+|++++.........+..+... ...|+++++||+|+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~---- 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQ---- 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHH----
Confidence 1267899999999888777777778899999999998742111111122222211 2247899999999862100
Q ss_pred cccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeeccCCCCHHH
Q psy9621 136 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKANINIEK 212 (253)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~ 212 (253)
+ . ...+..+++.+.. +++++++||++|.|+++
T Consensus 155 ----------------------~------------------~-----~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~ 189 (203)
T cd01888 155 ----------------------A------------------L-----ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDV 189 (203)
T ss_pred ----------------------H------------------H-----HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHH
Confidence 0 0 0112223333332 57899999999999999
Q ss_pred HHHHHHHHHH
Q psy9621 213 AFIELATAIY 222 (253)
Q Consensus 213 l~~~l~~~~~ 222 (253)
+|+.|.+.+.
T Consensus 190 L~~~l~~~l~ 199 (203)
T cd01888 190 LLEYIVKKIP 199 (203)
T ss_pred HHHHHHHhCC
Confidence 9999987553
No 178
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.84 E-value=1.2e-19 Score=162.35 Aligned_cols=162 Identities=19% Similarity=0.234 Sum_probs=115.0
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCC--CC-----Ccc------cCccceeeEEEEEee-----CCeEEEEEEEeCCC
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA--FN-----TTF------ISTIGIDFKIKTVDL-----KGKKIKLQIWDTAG 67 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~--~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G 67 (253)
.+...|++++|+.++|||||+.+|+... +. ..+ ....|+++....+.+ ++..+.+++|||||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 3557799999999999999999997521 11 111 112344444333322 34578899999999
Q ss_pred cccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeE
Q psy9621 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM 147 (253)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (253)
+.+|...+..+++.+|++|+|+|+++.........|.... ..++|+++++||+|+...
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a------------------ 141 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAA------------------ 141 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcc------------------
Confidence 9999988999999999999999999876555555554332 247899999999998511
Q ss_pred EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 148 LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
. ......++.+.+++ .++++||++|.|++++++.|...+...
T Consensus 142 ----------------------------~-------~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 142 ----------------------------D-------PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred ----------------------------c-------HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 0 00112233333444 389999999999999999999887643
No 179
>KOG0076|consensus
Probab=99.83 E-value=1.5e-20 Score=137.06 Aligned_cols=162 Identities=20% Similarity=0.286 Sum_probs=125.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc-------CCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcC
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD-------DAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRG 81 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 81 (253)
.+.|+++|..++|||||+.+... +..+..-.+|+|.+.....+. ...+.+||..|++..+++|..|+-.
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~----~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC----NAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec----cceeEEEEcCChHHHHHHHHHHHHH
Confidence 57899999999999999998763 222234567777666654443 4569999999999999999999999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 82 AMGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
++++|+++|+++++.|+.....++.+..+. -.++|+++.+||.|+......
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~---------------------------- 144 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEA---------------------------- 144 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhH----------------------------
Confidence 999999999999999999888777775554 378999999999998733221
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
. ..+.....++.. ..++.++||.+|+||++...++.+.+.++
T Consensus 145 ---------------~-------El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 145 ---------------A-------ELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ---------------H-------HHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 0 001111112332 37899999999999999999999999887
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.83 E-value=1.1e-19 Score=165.46 Aligned_cols=160 Identities=18% Similarity=0.175 Sum_probs=109.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
...+|+|+|+.++|||||+++|....+.....+.+..+.....+.++ ...+.+|||||++.|..++...+..+|++||
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 45789999999999999999998877665433333222322334444 3568999999999999999989999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
|||+++...-+.... +......++|++|++||+|+.+. .++.+...+.+
T Consensus 367 VVdAddGv~~qT~e~----i~~a~~~~vPiIVviNKiDl~~a---------------------------~~e~V~~eL~~ 415 (787)
T PRK05306 367 VVAADDGVMPQTIEA----INHAKAAGVPIIVAINKIDKPGA---------------------------NPDRVKQELSE 415 (787)
T ss_pred EEECCCCCCHhHHHH----HHHHHhcCCcEEEEEECcccccc---------------------------CHHHHHHHHHH
Confidence 999987422111111 22222357999999999998521 11111111110
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHH
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
...++..++ ++++++||++|.|++++|+.|...
T Consensus 416 --------------------~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 416 --------------------YGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred --------------------hcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 011223344 799999999999999999998764
No 181
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=8.5e-20 Score=159.01 Aligned_cols=175 Identities=14% Similarity=0.181 Sum_probs=113.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCc-ccCccceeeEEEEEeeCCeEEEEEEEeCCCcc--------cccccchhhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTT-FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE--------RFHTITTSYYRG 81 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~~ 81 (253)
+|+++|.+|||||||+++|.+...... ..+....+.....+...+ ..+.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998663221 122222233333344443 459999999963 333445567899
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621 82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 161 (253)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
+|++++|+|..+..+.... .+...+.+ .+.|+++|+||+|+..
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~--------------------------------- 121 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKK--------------------------------- 121 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCc---------------------------------
Confidence 9999999999875443331 22222222 3689999999999851
Q ss_pred HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeec
Q psy9621 162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (253)
... ...+ ..++++ +++++||++|.|++++++.+.+.+..............++.+-
T Consensus 122 -------------~~~---------~~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~iv 178 (429)
T TIGR03594 122 -------------EDA---------VAAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAII 178 (429)
T ss_pred -------------ccc---------cHHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEE
Confidence 111 1111 235565 7999999999999999999998875543322222233456666
Q ss_pred CCCCCCC
Q psy9621 241 KKPDRGG 247 (253)
Q Consensus 241 ~~~~~~~ 247 (253)
..++.||
T Consensus 179 G~~~~GK 185 (429)
T TIGR03594 179 GRPNVGK 185 (429)
T ss_pred CCCCCCH
Confidence 6666553
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=1.8e-19 Score=157.14 Aligned_cols=173 Identities=17% Similarity=0.200 Sum_probs=113.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc--------ccccchhhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER--------FHTITTSYYR 80 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~ 80 (253)
.+|+++|.+|||||||+++|.+.... ....+....+.....+.+.+ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999976642 11123222333334444544 6799999999876 2223345778
Q ss_pred CccEEEEEEeCCChhhHHH--HHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 81 GAMGIMLVYDITNEKSFDN--ILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
.+|++|+|+|++++.+... +..|+.. .+.|+++++||+|+.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~------------------------------- 122 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGP------------------------------- 122 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCc-------------------------------
Confidence 9999999999987544332 2334332 378999999999974
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeE
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRV 237 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~ 237 (253)
.. .....++ ..+++ .++++||++|.|++++|+.+......... ........++
T Consensus 123 ---------------~~---------~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~-~~~~~~~~~v 176 (435)
T PRK00093 123 ---------------DE---------EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEE-EDEEDEPIKI 176 (435)
T ss_pred ---------------cc---------hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCcccc-ccccccceEE
Confidence 10 0111222 24455 48999999999999999999884332211 1112234567
Q ss_pred eecCCCCCCC
Q psy9621 238 TIDKKPDRGG 247 (253)
Q Consensus 238 ~~~~~~~~~~ 247 (253)
.+-..++.||
T Consensus 177 ~ivG~~n~GK 186 (435)
T PRK00093 177 AIIGRPNVGK 186 (435)
T ss_pred EEECCCCCCH
Confidence 7666666664
No 183
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.83 E-value=1.6e-19 Score=136.65 Aligned_cols=156 Identities=12% Similarity=0.037 Sum_probs=101.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc--------cchhhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT--------ITTSYYR 80 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 80 (253)
..+|+++|++|+|||||++++.+............ ...............+.+|||||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQT-TRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCc-eeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 56899999999999999999997654322111111 11111122233456799999999764332 2234578
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
.+|++++|+|++++.+.. ...+.+.+.. .+.|+++++||+|+..
T Consensus 82 ~~d~i~~v~d~~~~~~~~-~~~~~~~~~~---~~~~~iiv~nK~Dl~~-------------------------------- 125 (168)
T cd04163 82 DVDLVLFVVDASEPIGEG-DEFILELLKK---SKTPVILVLNKIDLVK-------------------------------- 125 (168)
T ss_pred hCCEEEEEEECCCccCch-HHHHHHHHHH---hCCCEEEEEEchhccc--------------------------------
Confidence 899999999999872211 1223333322 2689999999999861
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHH
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
... ...+....+....+ .+++++|++++.|++++++.|.+.
T Consensus 126 --------------~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 126 --------------DKE-----DLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred --------------cHH-----HHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 111 11222333444443 689999999999999999999764
No 184
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.83 E-value=2.1e-19 Score=137.01 Aligned_cols=156 Identities=20% Similarity=0.165 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc----------c-ch
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT----------I-TT 76 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~-~~ 76 (253)
.++|+++|++|+|||||++++.+..... ...+....+.....+...+ ..+.+|||||...... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5799999999999999999998765322 1122222222223333443 3478999999754311 0 12
Q ss_pred hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621 77 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK 156 (253)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (253)
.++..+|++++|+|++++.+..... ++..+. ..+.|+++++||+|+...
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~~~iiv~nK~Dl~~~--------------------------- 128 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL---EEGKALVIVVNKWDLVEK--------------------------- 128 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH---hcCCCEEEEEeccccCCc---------------------------
Confidence 3467899999999999987755432 222222 246899999999998621
Q ss_pred chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh----CCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY----GVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
... ........+.+.+ ..+++++||+++.|+++++..+.+.
T Consensus 129 -------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 129 -------------------DSK----TMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred -------------------cHH----HHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 100 0001111222222 3689999999999999999998764
No 185
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=1.5e-19 Score=157.49 Aligned_cols=165 Identities=19% Similarity=0.118 Sum_probs=106.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc----------
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT---------- 75 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------- 75 (253)
+..+||+++|.+|+|||||+++|++..... ...+....+.....+..++ ..+.+|||||...+....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 345899999999999999999999765321 1122222222223333443 368999999975543221
Q ss_pred -hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 76 -TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 76 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
..+++.+|++|+|+|++++.+..... ++..+.. .+.|+++++||+|+....
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~------------------------ 299 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDE------------------------ 299 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCH------------------------
Confidence 23678999999999999887766543 3333322 478999999999985100
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
..+++ +.......+.....++++++||++|.|++++|+.+.+.....
T Consensus 300 -~~~~~----------------------~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 300 -KTREE----------------------FKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred -HHHHH----------------------HHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 00000 000111111111237999999999999999999998876654
No 186
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=3.3e-19 Score=154.46 Aligned_cols=162 Identities=12% Similarity=0.085 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----ccccchh---hhcCc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----FHTITTS---YYRGA 82 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~~ 82 (253)
..|+|||.||||||||+++|++.+......|........-.+.+. ...+.+|||||..+ ...+... .+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~--~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG--DTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC--CeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 579999999999999999999765432211111111221223333 35799999999642 2222222 35679
Q ss_pred cEEEEEEeCCCh----hhHHHHHHHHHHHHHhc-----------ccccceeEEeeeeccccccccccccccccccceeeE
Q psy9621 83 MGIMLVYDITNE----KSFDNILKWLRNIDEHA-----------NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM 147 (253)
Q Consensus 83 d~~ilv~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (253)
+++|+|+|+++. +.+..+..+..++..+. ..+.|++||+||+|+..
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d------------------- 298 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD------------------- 298 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh-------------------
Confidence 999999999853 35555555555554443 14689999999999851
Q ss_pred EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 148 LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
... .. +......+..++++|++||+++.|+++|+.+|.+.+....
T Consensus 299 ---------------------------a~e-----l~-e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 299 ---------------------------ARE-----LA-EFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred ---------------------------hHH-----HH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 111 10 1112222345789999999999999999999999886644
No 187
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.82 E-value=6.6e-20 Score=142.19 Aligned_cols=162 Identities=20% Similarity=0.209 Sum_probs=106.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCc------------------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTT------------------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (253)
..++|+++|+.++|||||+.+|+...-... .......+.....+........+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 468999999999999999999984331110 01111222222222212456779999999999
Q ss_pred cccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEE
Q psy9621 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV 149 (253)
Q Consensus 70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (253)
.|.......+..+|++|+|+|+.+.-.... ...+..+.. .++|+++++||+|+...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlNK~D~~~~-------------------- 137 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLNKMDLIEK-------------------- 137 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEETCTSSHH--------------------
T ss_pred ceeecccceecccccceeeeeccccccccc-ccccccccc---cccceEEeeeeccchhh--------------------
Confidence 998888888999999999999987643322 222233322 47899999999998611
Q ss_pred EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY------GVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.+.+ ...+....+.+.. .+|++++||++|.|+++|++.|.+.+.
T Consensus 138 -------~~~~----------------------~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 138 -------ELEE----------------------IIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp -------HHHH----------------------HHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred -------hHHH----------------------HHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 0000 1111122333333 358999999999999999999988754
No 188
>PRK00089 era GTPase Era; Reviewed
Probab=99.82 E-value=3.8e-19 Score=147.26 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=103.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc--------cchhhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT--------ITTSYYR 80 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 80 (253)
.-.|+|+|++|||||||+|++.+...................+ ......++.+|||||...... .....+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i-~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGI-VTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEE-EEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4579999999999999999999876543321111111111112 122346799999999754322 2233568
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
.+|++++|+|+++..+- .....+..+. ..+.|+++|+||+|+.
T Consensus 84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~--------------------------------- 126 (292)
T PRK00089 84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLV--------------------------------- 126 (292)
T ss_pred cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCC---------------------------------
Confidence 89999999999883221 1122222222 2468999999999986
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
.... ........+.+..+ .+++++||+++.|++++++.|...+...
T Consensus 127 -------------~~~~-----~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 127 -------------KDKE-----ELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred -------------CCHH-----HHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 1111 11223344444444 6889999999999999999999887653
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=5e-19 Score=162.12 Aligned_cols=180 Identities=14% Similarity=0.109 Sum_probs=114.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc--------ccccchhh
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER--------FHTITTSY 78 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~ 78 (253)
....+|+++|.+|||||||+++|.+...... .++.|++..............+.+|||||.+. +......+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3457899999999999999999997654222 23334444333333222345689999999763 22333456
Q ss_pred hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
+..+|++|+|+|+++..+... ..|...+.. .+.|+++|+||+|+.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~------------------------------- 396 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQ------------------------------- 396 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccc-------------------------------
Confidence 789999999999976422111 234444433 579999999999975
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccCCCC--CCCCCC
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTSGRD--PLEAPD 235 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~--~~~~~~ 235 (253)
... ....++. .++. ..+++||++|.|++++|+.|...+........ ++....
T Consensus 397 ---------------~~~---------~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~ 451 (712)
T PRK09518 397 ---------------ASE---------YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLR 451 (712)
T ss_pred ---------------cch---------hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCc
Confidence 110 0111111 1232 45799999999999999999998865332110 122234
Q ss_pred eEeecCCCCCCC
Q psy9621 236 RVTIDKKPDRGG 247 (253)
Q Consensus 236 ~~~~~~~~~~~~ 247 (253)
++.+-..++.||
T Consensus 452 kI~ivG~~nvGK 463 (712)
T PRK09518 452 RVALVGRPNVGK 463 (712)
T ss_pred EEEEECCCCCCH
Confidence 666666666653
No 190
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.81 E-value=4.2e-19 Score=158.69 Aligned_cols=146 Identities=18% Similarity=0.209 Sum_probs=105.6
Q ss_pred cCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc------chhhh--cCccEEEE
Q psy9621 16 GDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI------TTSYY--RGAMGIML 87 (253)
Q Consensus 16 G~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~~il 87 (253)
|.+|||||||+|++.+..+.....|....+.....+.+++ ..+++|||||+..+... .+.++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998776544455544455444555544 45899999999877553 23333 37899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
|+|.++.+.. ..+..++ .+.++|+++++||+|+..
T Consensus 79 VvDat~ler~---l~l~~ql---~~~~~PiIIVlNK~Dl~~--------------------------------------- 113 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQL---LELGIPMILALNLVDEAE--------------------------------------- 113 (591)
T ss_pred EecCCcchhh---HHHHHHH---HhcCCCEEEEEehhHHHH---------------------------------------
Confidence 9999875421 2222222 235799999999999862
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
... +. ...+++++..+++++++||++|.|++++++.+.+..
T Consensus 114 -------~~~-----i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 114 -------KKG-----IR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred -------hCC-----Ch-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 111 11 235678888899999999999999999999998754
No 191
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=1.4e-18 Score=147.93 Aligned_cols=162 Identities=13% Similarity=0.150 Sum_probs=109.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc----ccch---hhhcCcc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH----TITT---SYYRGAM 83 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~~---~~~~~~d 83 (253)
.|+|||.||||||||+|++++.+......|........-.+... ....+.++||||..+-. .+.. ..+..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 69999999999999999999765432211111111111122222 23459999999975321 1222 2467899
Q ss_pred EEEEEEeCC---ChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 84 GIMLVYDIT---NEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 84 ~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
++++|+|++ +.+.++....|++++..+.. .+.|+++|+||+|+..
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~------------------------------ 289 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD------------------------------ 289 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC------------------------------
Confidence 999999998 45667777788888776542 4689999999999851
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
... + .+...++.+..+ .+++.+||+++.|++++++.|.+.+....
T Consensus 290 ----------------~~e-----l-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 290 ----------------EEE-----A-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred ----------------hHH-----H-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCc
Confidence 111 1 122334444444 47899999999999999999999887643
No 192
>KOG0072|consensus
Probab=99.81 E-value=6.6e-20 Score=129.56 Aligned_cols=166 Identities=22% Similarity=0.327 Sum_probs=124.8
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
.+...+|+++|--|+||||++.++.-+..... .|++|.+... +..++.++++||..|+...+..|+.|+.+.+++
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceE
Confidence 45788999999999999999999887666555 7787755542 334788999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHH-HHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNI-DEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
|+|+|.++++........+..+ ....-++..+++++||.|..+....
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~-------------------------------- 137 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTR-------------------------------- 137 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhH--------------------------------
Confidence 9999999988766665444443 3333366889999999998643111
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
.+ +......+-.+..-+.+|++||.+|+|+|.++++|.+.+.++
T Consensus 138 ---------------~E-~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 138 ---------------SE-VLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred ---------------HH-HHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 00 111122222223337899999999999999999999987654
No 193
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.81 E-value=3.5e-19 Score=154.61 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=80.2
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhc--CCCCCc---------------------------ccCccceeeEEEEEeeCCe
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSD--DAFNTT---------------------------FISTIGIDFKIKTVDLKGK 56 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 56 (253)
..+.++|+++|+.++|||||+.+|+. +..... ....-|++.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 44579999999999999999999975 222110 0011133333334445555
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHH--HHHHhcccccceeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR--NIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~--~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
...+.+|||||++.|.......+..+|++|+|+|+++.+++.. ..+.. .+.... ...|+++++||+|+.
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~~-~~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLARTL-GINQLIVAINKMDSV 154 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHHc-CCCeEEEEEEChhcc
Confidence 6789999999999887666666789999999999998753311 11111 122222 235799999999986
No 194
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.81 E-value=2.8e-19 Score=146.19 Aligned_cols=116 Identities=20% Similarity=0.244 Sum_probs=79.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCccc------Cc----------cceeeEEEEEeeCCeEEEEEEEeCCCccccccc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFI------ST----------IGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI 74 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 74 (253)
||+++|++|+|||||+++++......... .+ .+.+.......+......+.+|||||+..|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 68999999999999999997432110000 00 011222222233334567999999999888777
Q ss_pred chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621 75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 130 (253)
...+++.+|++++|+|+++.........| ..+. ..++|+++++||+|..+..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~---~~~~p~iivvNK~D~~~~~ 132 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD---EAGIPRIIFINKMDRERAD 132 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCccCCCC
Confidence 88899999999999999987554433333 2222 2478999999999998763
No 195
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=1.4e-18 Score=128.64 Aligned_cols=155 Identities=19% Similarity=0.270 Sum_probs=114.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCC--------cc----cCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT--------TF----ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI 74 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 74 (253)
-...||+|+|+-++||||++.++....... .+ ..|+.++|...... ....++++|||||++|+.+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~---~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD---EDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc---CcceEEEecCCCcHHHHHH
Confidence 346799999999999999999998765311 11 13445555543332 3356999999999999999
Q ss_pred chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
+..+++++.++|+++|.+.+..+ .....+.-+ ... ..+|++|+.||.|+..+
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~-~~~-~~ip~vVa~NK~DL~~a------------------------- 136 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFL-TSR-NPIPVVVAINKQDLFDA------------------------- 136 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHH-hhc-cCCCEEEEeeccccCCC-------------------------
Confidence 99999999999999999999888 333333333 332 23999999999999743
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH--hCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE--YGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
...+..+++.+. ..+++++.+|..++|..+.++.+...
T Consensus 137 ----------------------------~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 137 ----------------------------LPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ----------------------------CCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 222333333333 36899999999999999999887765
No 196
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.80 E-value=9.3e-19 Score=151.97 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=78.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-----------------------------ccCccceeeEEEEEeeCCeE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-----------------------------FISTIGIDFKIKTVDLKGKK 57 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 57 (253)
.+.++|+++|++++|||||+++|+...-... ....-|++.......+....
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 3469999999999999999999983211100 00122334443444455556
Q ss_pred EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
..+.+|||||++.|.......+..+|++|+|+|++++.++.....+...+.... ...|+++++||+|+.
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~ 152 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAV 152 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccc
Confidence 789999999998887655556789999999999987322222222211222222 224689999999986
No 197
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.80 E-value=2.6e-18 Score=157.07 Aligned_cols=153 Identities=17% Similarity=0.191 Sum_probs=112.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc----------chhh
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI----------TTSY 78 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~ 78 (253)
.++|+++|++|||||||+|++.+.+.... +..|.+...+...+......+.+|||||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg--n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG--NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 47999999999999999999997655332 23455555555555556678999999998766432 1123
Q ss_pred h--cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621 79 Y--RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK 156 (253)
Q Consensus 79 ~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (253)
+ ..+|++|+|+|.++.+.- ..+..++.+ .++|+++++||+|+.
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~----------------------------- 125 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIA----------------------------- 125 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhh-----------------------------
Confidence 2 479999999999886532 233334433 479999999999986
Q ss_pred chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
+... + ....+++.+.+|+|++++||++|.|++++.+.+....
T Consensus 126 -----------------~~~~-----i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 126 -----------------EKQN-----I-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred -----------------hccC-----c-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 2221 2 2345677888999999999999999999999988765
No 198
>KOG0074|consensus
Probab=99.80 E-value=1.1e-18 Score=123.09 Aligned_cols=121 Identities=26% Similarity=0.442 Sum_probs=99.5
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
++....+||+++|..++|||||+..+.+.... ...||.| |....+... +...+.+||.+|+...+..|+.|+.+.|
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd 87 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVD 87 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeec-CcEEEEEEecCCccccchhhhhhhhccc
Confidence 46688999999999999999999999875443 3367777 444455444 4678999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeecccc
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAG 128 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~ 128 (253)
++|+|+|.++...|+.+..-+-++.... -..+|++|..||.|+..
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT 133 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh
Confidence 9999999999999998886666655443 36799999999999863
No 199
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=2.2e-18 Score=150.41 Aligned_cols=164 Identities=18% Similarity=0.133 Sum_probs=104.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc-----------
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI----------- 74 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 74 (253)
...++|+++|.+|+|||||++++++.... ....+ |.+.......+......+.+|||||.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~--gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIA--GTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCC--CceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 35799999999999999999999975422 22222 22232222222223355889999996432211
Q ss_pred chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
...+++.+|++|+|+|++++.+..... +...+.. .+.|+++++||+|+..+..
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~----------------------- 301 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT----------------------- 301 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-----------------------
Confidence 123678999999999999887666543 2233322 4689999999999851100
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
..+ +.......+.....++++++||++|.|++++++.+.+.....
T Consensus 302 ---~~~----------------------~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 302 ---MEE----------------------FKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred ---HHH----------------------HHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 000 111111111112247999999999999999999988766543
No 200
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.79 E-value=2.4e-18 Score=152.89 Aligned_cols=111 Identities=19% Similarity=0.142 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCc----ccCccceeeEEEEEe------------eCCeEEEEEEEeCCCcccccc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTT----FISTIGIDFKIKTVD------------LKGKKIKLQIWDTAGQERFHT 73 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~----~~~~~~~~~~~~~~~------------~~~~~~~~~l~Dt~G~~~~~~ 73 (253)
.-|+++|++++|||||+++|.+..+... ..+++|..+...... ++.....+.+|||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 3599999999999999999998766533 233444333221110 011112488999999999999
Q ss_pred cchhhhcCccEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 74 ITTSYYRGAMGIMLVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 74 ~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
++..+++.+|++++|||+++ +.+++.+..+ . ..++|+++++||+|+.
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~---~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNIL----R---MYKTPFVVAANKIDRI 134 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----H---HcCCCEEEEEECCCcc
Confidence 99999999999999999987 4444443321 1 2478999999999986
No 201
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.79 E-value=9.7e-19 Score=142.32 Aligned_cols=208 Identities=16% Similarity=0.152 Sum_probs=121.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCC--CCC-----------ccc---CccceeeEEEEEeeCCeEEEEEEEeCCCccccccc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDA--FNT-----------TFI---STIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI 74 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~--~~~-----------~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 74 (253)
||+++|++|+|||||+++|+... ... ++. ...+++.......+.....++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 68999999999999999997311 100 000 11233333333344445678999999999888888
Q ss_pred chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc---cccccccccccceeeE----
Q psy9621 75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER---FHTITTSYYRGAMGIM---- 147 (253)
Q Consensus 75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~---- 147 (253)
+..+++.+|++|+|+|+++...-.. ...+..+. ..++|+++++||+|+.+... .+++.+.+-.......
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~---~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pis 156 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQAD---RYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIG 156 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccc
Confidence 8889999999999999987532222 22223332 24689999999999976432 2333332211111000
Q ss_pred ----------------EEE-ec---------cCccchhhHHHHHHhhhhhcCCCchhhh-hh-----ccchhHHH-HHH-
Q psy9621 148 ----------------LVY-DI---------TNEKSFDNILKWLRNIDEHANEDPQVVN-SW-----VCKHRGEA-IAR- 193 (253)
Q Consensus 148 ----------------~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~-~~~- 193 (253)
..| +. ...+..+...++++.+.+...+.++... .. +..++..+ +.+
T Consensus 157 a~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~ 236 (270)
T cd01886 157 EEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKG 236 (270)
T ss_pred cCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 111 10 0112233445555555444323222111 11 22222221 111
Q ss_pred ---HhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 194 ---EYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 194 ---~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
..-+|+|..||.++.|++.|++.+...+.
T Consensus 237 ~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p 268 (270)
T cd01886 237 TIANKIVPVLCGSAFKNKGVQPLLDAVVDYLP 268 (270)
T ss_pred HHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcC
Confidence 12279999999999999999999988764
No 202
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.79 E-value=2.6e-18 Score=128.78 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=100.4
Q ss_pred EEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc-------hhhhcCccEE
Q psy9621 14 LIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT-------TSYYRGAMGI 85 (253)
Q Consensus 14 vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~d~~ 85 (253)
++|++|+|||||++++.+.... ....+.............. ....+.+|||||...+.... ..+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999876544 2212211112222222222 14579999999987664333 3478899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
++|+|.++..+..... +..... ..+.|+++++||+|+...
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~------------------------------------ 119 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPE------------------------------------ 119 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCCh------------------------------------
Confidence 9999999887666654 333332 257999999999998621
Q ss_pred HhhhhhcCCCchhhhhhccc---hhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 166 RNIDEHANEDPQVVNSWVCK---HRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.. ... ..........+.+++++||+++.|++++++.+.+.
T Consensus 120 ----------~~-----~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 120 ----------EE-----EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred ----------hh-----HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 11 000 01122223345899999999999999999998764
No 203
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.79 E-value=7.8e-18 Score=134.50 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=59.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc----c---cchhhhcCcc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH----T---ITTSYYRGAM 83 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~~~~~~~d 83 (253)
+|+++|++|+|||||+++|.+........+....+...-.+.+. ...+++|||||..+.. . ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 78999999999999999999765322111111112222233333 4579999999975432 1 1234678999
Q ss_pred EEEEEEeCCChh-hHHHHHHHH
Q psy9621 84 GIMLVYDITNEK-SFDNILKWL 104 (253)
Q Consensus 84 ~~ilv~d~~~~~-s~~~~~~~~ 104 (253)
++++|+|++++. ....+...+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l 101 (233)
T cd01896 80 LILMVLDATKPEGHREILEREL 101 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHH
Confidence 999999998765 344443333
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=4.2e-18 Score=151.88 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=89.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhc--CCCCCcc------------cCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSD--DAFNTTF------------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT 73 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 73 (253)
...||+++|+.++|||||+++|+. +.+.... .++.|+++......+..+...+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 468999999999999999999986 3332221 23456677766667777788999999999999999
Q ss_pred cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 74 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.+..+++.+|++|+|+|+++...... ..++..+.. .++|.++++||+|+.
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~ 133 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRP 133 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCC
Confidence 99999999999999999987532222 233333322 478999999999986
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.78 E-value=2.1e-18 Score=153.88 Aligned_cols=168 Identities=15% Similarity=0.173 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc--CCCCCcc------------cCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD--DAFNTTF------------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT 75 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 75 (253)
.||+++|+.++|||||+.+|+. +.+.... ....|++.......+.++...+.+|||||+..|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 5899999999999999999985 3222211 1123455555555555566889999999999998888
Q ss_pred hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621 76 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE 155 (253)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (253)
..+++.+|++++|+|+++.. ......|+..+.. .++|+++++||+|+..++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~------------------------- 132 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSAR------------------------- 132 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcC-------------------------
Confidence 99999999999999998642 3333455555544 468999999999986221
Q ss_pred cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCC----------CHHHHHHHHHHHHHhc
Q psy9621 156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANI----------NIEKAFIELATAIYDK 224 (253)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 224 (253)
+.++.. ++.+.+... .. .-++..+|++++||++|. |++.+|+.|...+..-
T Consensus 133 --~~~v~~---ei~~l~~~~--------g~-----~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 133 --PDEVVD---EVFDLFAEL--------GA-----DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred --HHHHHH---HHHHHHHhh--------cc-----ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 111111 000000000 00 002345799999999996 7999999999887643
No 206
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=2.9e-18 Score=144.02 Aligned_cols=175 Identities=14% Similarity=0.130 Sum_probs=118.1
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCcccee--eEEEEEeeCCeEEEEEEEeCCCccccc---------ccchhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGID--FKIKTVDLKGKKIKLQIWDTAGQERFH---------TITTSY 78 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~ 78 (253)
..|+++|.||||||||+|||.+.+..-. ..+.|++ .......+.+ ..+.++||+|.+... ......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 5799999999999999999998765433 1222332 2223333443 349999999976432 223557
Q ss_pred hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
+..+|++|||+|....-+ ...+.+..++. ..+.|+++|+||+|...
T Consensus 81 i~eADvilfvVD~~~Git--~~D~~ia~~Lr--~~~kpviLvvNK~D~~~------------------------------ 126 (444)
T COG1160 81 IEEADVILFVVDGREGIT--PADEEIAKILR--RSKKPVILVVNKIDNLK------------------------------ 126 (444)
T ss_pred HHhCCEEEEEEeCCCCCC--HHHHHHHHHHH--hcCCCEEEEEEcccCch------------------------------
Confidence 889999999999865322 22222222233 25799999999999641
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCC--CCCC
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTSGRDPL--EAPD 235 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~--~~~~ 235 (253)
......++ -.+| -..+.+||..|.|+++|++.+...+. ...+.... ..+.
T Consensus 127 -------------------------~e~~~~ef-yslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~i 179 (444)
T COG1160 127 -------------------------AEELAYEF-YSLGFGEPVPISAEHGRGIGDLLDAVLELLP-PDEEEEEEEETDPI 179 (444)
T ss_pred -------------------------hhhhHHHH-HhcCCCCceEeehhhccCHHHHHHHHHhhcC-CcccccccccCCce
Confidence 11112222 2445 37899999999999999999999985 33332222 3678
Q ss_pred eEeecCCCCCCCC
Q psy9621 236 RVTIDKKPDRGGM 248 (253)
Q Consensus 236 ~~~~~~~~~~~~~ 248 (253)
++.+--+||.+|+
T Consensus 180 kiaiiGrPNvGKS 192 (444)
T COG1160 180 KIAIIGRPNVGKS 192 (444)
T ss_pred EEEEEeCCCCCch
Confidence 9999999999865
No 207
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=4.9e-18 Score=155.65 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=107.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----------ccccc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----------FHTIT 75 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~ 75 (253)
+..+||+++|.+|||||||+++|++.... ....+....+.....+.+.+. .+.+|||||..+ |..++
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence 34689999999999999999999987642 122222223443344555554 467999999632 11111
Q ss_pred -hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 76 -TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 76 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
..+++.+|++|+|+|+++..+..... ++..+.. .+.|+++|+||+|+...
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~------------------------- 576 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDE------------------------- 576 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCCh-------------------------
Confidence 23468899999999999988777754 3333332 47899999999998511
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHH-HHHHHh----CCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE-AIAREY----GVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.. ....+ .+.... ..+++++||++|.|++++|+.+.+.+....
T Consensus 577 ---------------------~~-------~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 577 ---------------------FR-------RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred ---------------------hH-------HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 00 00011 111111 257799999999999999999999887643
No 208
>PRK13351 elongation factor G; Reviewed
Probab=99.77 E-value=3.1e-18 Score=156.81 Aligned_cols=124 Identities=17% Similarity=0.221 Sum_probs=88.7
Q ss_pred ccccCceeEEEEEcCCCCcHHHHHHHhhcCCC-------------CCcccC---ccceeeEEEEEeeCCeEEEEEEEeCC
Q psy9621 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAF-------------NTTFIS---TIGIDFKIKTVDLKGKKIKLQIWDTA 66 (253)
Q Consensus 3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~-------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~Dt~ 66 (253)
.++.+...||+|+|+.|+|||||+++|+...- ..++.+ ..+.+.......+......+.+||||
T Consensus 2 ~~~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtP 81 (687)
T PRK13351 2 EMPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTP 81 (687)
T ss_pred CCccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECC
Confidence 45667789999999999999999999974211 000000 11222222222333456789999999
Q ss_pred CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 130 (253)
|+.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++++||+|+.+.+
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~~~ 141 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVGAD 141 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCCCC
Confidence 9999988889999999999999999987766654444 22222 479999999999998764
No 209
>COG1159 Era GTPase [General function prediction only]
Probab=99.77 E-value=1e-17 Score=133.63 Aligned_cols=162 Identities=12% Similarity=0.031 Sum_probs=107.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc--------chhhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI--------TTSYYR 80 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~ 80 (253)
.--|+++|.||||||||+|++.+.+....++.... +.....--+..++.++.++||||..+-... ....+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QT-TR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQT-TRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcch-hhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 45799999999999999999999877654332221 222222223335788999999997543322 234568
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
.+|+++||+|++....- .....++.+.. .+.|+++++||+|...
T Consensus 85 dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~-------------------------------- 128 (298)
T COG1159 85 DVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVK-------------------------------- 128 (298)
T ss_pred cCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCC--------------------------------
Confidence 99999999999874332 11233333322 4689999999999872
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
+.. ........+..... ..++++||++|.|++.|.+.+...+.+...
T Consensus 129 --------------~~~-----~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 129 --------------PKT-----VLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred --------------cHH-----HHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCC
Confidence 221 11112222222333 488999999999999999999888776544
No 210
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.76 E-value=2.4e-18 Score=151.63 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=86.2
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhc--CCCC---------------Cc---ccCccceeeEEEEEeeCCeEEEEEEEeC
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSD--DAFN---------------TT---FISTIGIDFKIKTVDLKGKKIKLQIWDT 65 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~--~~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 65 (253)
.+...+|+++|++|+|||||+++|+. +... .+ .....|+++......+..+...+.+|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 35678999999999999999999973 1110 00 0011244444444555556688999999
Q ss_pred CCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc
Q psy9621 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER 131 (253)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 131 (253)
||+..|......+++.+|++|+|+|+++..... ...++.... ..++|+++++||+|+.+...
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~---~~~iPiiv~iNK~D~~~a~~ 148 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCR---LRDTPIFTFINKLDRDGREP 148 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHH---hcCCCEEEEEECCcccccCH
Confidence 999998887777899999999999998753221 223333322 25799999999999987654
No 211
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.76 E-value=1.4e-17 Score=126.17 Aligned_cols=152 Identities=14% Similarity=0.204 Sum_probs=98.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----------ccccchhhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----------FHTITTSYYR 80 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~ 80 (253)
.|+++|++|+|||||++.+.+..+.....++.+.+........+. .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999996666555556665554443343332 799999999533 3333344444
Q ss_pred ---CccEEEEEEeCCChhh--HHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621 81 ---GAMGIMLVYDITNEKS--FDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE 155 (253)
Q Consensus 81 ---~~d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (253)
..+++++++|.+...+ ...+..|+.. .+.|+++++||+|+...
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~-------------------------- 125 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKK-------------------------- 125 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCCh--------------------------
Confidence 4568889999876532 2223344333 25899999999998511
Q ss_pred cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH--HhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR--EYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.... ..........+ ....+++++||+++.|++++++.|.+.
T Consensus 126 --------------------~~~~---~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 126 --------------------SELA---KALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred --------------------HHHH---HHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 1000 11111222222 234689999999999999999999865
No 212
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.76 E-value=6e-18 Score=133.22 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=71.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcc--------------------------c---CccceeeEEEEEeeCCeEEEEE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTF--------------------------I---STIGIDFKIKTVDLKGKKIKLQ 61 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~--------------------------~---~~~~~~~~~~~~~~~~~~~~~~ 61 (253)
||+++|++|+|||||+++|+...-.... . ..-|++.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999742211100 0 0012222222223333455789
Q ss_pred EEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 62 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
+|||||+.+|.......++.+|++|+|+|++++..-.. ..... +.... ...++++++||+|+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~-~~~~~-~~~~iIvviNK~D~~ 143 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSY-ILSLL-GIRHVVVAVNKMDLV 143 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHH-HHHHc-CCCcEEEEEEchhcc
Confidence 99999998876656667889999999999987532221 11111 12221 223577789999985
No 213
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.75 E-value=1.3e-17 Score=152.52 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=88.5
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCC----ccc------------CccceeeEEEEEeeCCeEEEEEEEe
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT----TFI------------STIGIDFKIKTVDLKGKKIKLQIWD 64 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D 64 (253)
|-..+.+...||+++|++++|||||+++|+...-.. ... ...|++.......+.....++.+||
T Consensus 2 ~~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liD 81 (689)
T TIGR00484 2 ARTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIID 81 (689)
T ss_pred CCcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEE
Confidence 455677788999999999999999999997321100 000 0113333333333334457899999
Q ss_pred CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 130 (253)
|||+..+......+++.+|++|+|+|+++.........| ..+.. .++|+++++||+|+.++.
T Consensus 82 TPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 82 TPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred CCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCCCC
Confidence 999998888888899999999999999876544433222 22222 468999999999998654
No 214
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.75 E-value=2.6e-17 Score=141.74 Aligned_cols=185 Identities=15% Similarity=0.151 Sum_probs=107.2
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCC---cccC--ccceeeEEEEEe----------------eC--C--
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT---TFIS--TIGIDFKIKTVD----------------LK--G-- 55 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~---~~~~--~~~~~~~~~~~~----------------~~--~-- 55 (253)
||. ...+.++|+++|+.++|||||+.+|.+...+. +..+ |+...+....+. .+ +
T Consensus 2 ~~~-~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
T PRK04000 2 MWE-KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSE 80 (411)
T ss_pred Ccc-cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccc
Confidence 444 34557999999999999999999986421111 1011 111111100100 00 0
Q ss_pred --eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeecccccccc
Q psy9621 56 --KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERF 132 (253)
Q Consensus 56 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~ 132 (253)
....+.+|||||++.|..........+|++++|+|++++. .-..... +..+.. . ...|+++++||+|+...
T Consensus 81 ~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~-~-~i~~iiVVlNK~Dl~~~--- 154 (411)
T PRK04000 81 TELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDI-I-GIKNIVIVQNKIDLVSK--- 154 (411)
T ss_pred cccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHH-c-CCCcEEEEEEeeccccc---
Confidence 1357899999999887655445556789999999999643 1111111 112211 1 22468999999998621
Q ss_pred ccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH---hCCceEEeeccCCCC
Q psy9621 133 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE---YGVRFMETSAKANIN 209 (253)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~g 209 (253)
.... ...++...+.+. .+++++++||++|.|
T Consensus 155 -------------------------------------------~~~~---~~~~~i~~~l~~~~~~~~~ii~vSA~~g~g 188 (411)
T PRK04000 155 -------------------------------------------ERAL---ENYEQIKEFVKGTVAENAPIIPVSALHKVN 188 (411)
T ss_pred -------------------------------------------hhHH---HHHHHHHHHhccccCCCCeEEEEECCCCcC
Confidence 1000 011122233332 247899999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCeEeecC
Q psy9621 210 IEKAFIELATAIYDKTSGRDPLEAPDRVTIDK 241 (253)
Q Consensus 210 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (253)
+++|++.|...+... ....+.+-++.|..
T Consensus 189 I~~L~~~L~~~l~~~---~~~~~~~~r~~I~~ 217 (411)
T PRK04000 189 IDALIEAIEEEIPTP---ERDLDKPPRMYVAR 217 (411)
T ss_pred HHHHHHHHHHhCCCC---CCCCCCCceEEEEe
Confidence 999999998866432 22223444555553
No 215
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.75 E-value=7.2e-18 Score=148.68 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=86.0
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhc--CCCCC---------------c---ccCccceeeEEEEEeeCCeEEEEEEEe
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSD--DAFNT---------------T---FISTIGIDFKIKTVDLKGKKIKLQIWD 64 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~--~~~~~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~l~D 64 (253)
......+|+++|++++|||||+++|+. +.... . .....|+++......+..+...+.+||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 345678999999999999999999863 11100 0 011224555555566666778899999
Q ss_pred CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 130 (253)
|||+..|......+++.+|++|+|+|+++... .....+++.. .. .++|+++++||+|+.+..
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~~--~~~PiivviNKiD~~~~~ 148 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT-RL--RDTPIFTFMNKLDRDIRD 148 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH-Hh--cCCCEEEEEECccccCCC
Confidence 99998887777778899999999999987421 1122333322 22 579999999999997543
No 216
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.75 E-value=1.9e-17 Score=142.68 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=102.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCC---cccC--ccceeeEEEE------------Eee----CC------eEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT---TFIS--TIGIDFKIKT------------VDL----KG------KKIK 59 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~---~~~~--~~~~~~~~~~------------~~~----~~------~~~~ 59 (253)
+..++|+++|+.++|||||+++|....... .... |+...+.... .+. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 467899999999999999999996532211 1000 1111111000 000 11 1357
Q ss_pred EEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccc
Q psy9621 60 LQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSY 139 (253)
Q Consensus 60 ~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 139 (253)
+.+|||||++.|..........+|++|+|+|+++........+.+..+.. . ...|+++++||+|+.....
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~-gi~~iIVvvNK~Dl~~~~~-------- 151 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-I-GIKNIVIVQNKIDLVSKEK-------- 151 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-c-CCCeEEEEEEccccCCHHH--------
Confidence 89999999999977777777889999999999864311111222222222 1 2346899999999862100
Q ss_pred cccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeeccCCCCHHHHHHH
Q psy9621 140 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKANINIEKAFIE 216 (253)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~ 216 (253)
.. ...++..++.+.. +++++++||++|.|+++|++.
T Consensus 152 ---------------------~~--------------------~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~ 190 (406)
T TIGR03680 152 ---------------------AL--------------------ENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEA 190 (406)
T ss_pred ---------------------HH--------------------HHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHH
Confidence 00 0011222222222 578999999999999999999
Q ss_pred HHHHHH
Q psy9621 217 LATAIY 222 (253)
Q Consensus 217 l~~~~~ 222 (253)
|...+.
T Consensus 191 L~~~l~ 196 (406)
T TIGR03680 191 IEKFIP 196 (406)
T ss_pred HHHhCC
Confidence 988654
No 217
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=1.9e-17 Score=130.88 Aligned_cols=113 Identities=23% Similarity=0.294 Sum_probs=80.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcc-----------------cCccceeeEEEEEee-----CCeEEEEEEEeCCCc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTF-----------------ISTIGIDFKIKTVDL-----KGKKIKLQIWDTAGQ 68 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~ 68 (253)
+|+++|+.|+|||||+++|+........ ....++++......+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 7999999999999999999864332210 011223332222222 345688999999999
Q ss_pred ccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
..|......++..+|++|+|+|+++..+... ..++..... .++|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888888999999999999987765543 334333322 358999999999975
No 218
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.74 E-value=7.1e-17 Score=144.80 Aligned_cols=170 Identities=17% Similarity=0.181 Sum_probs=108.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCC---CCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDA---FNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
-|+++|+.++|||||+++|.+.. +.....+.+.++.....+...+ ...+.+|||||++.|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 58899999999999999998532 3333323333333322332222 2348999999999987666667889999999
Q ss_pred EEeCCCh---hhHHHHHHHHHHHHHhcccccc-eeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 88 VYDITNE---KSFDNILKWLRNIDEHANEDVE-KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 88 v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
|+|+++. .+.+.+ ..+ .. .++| +++|+||+|+..+.. ++
T Consensus 81 VVda~eg~~~qT~ehl----~il-~~--lgi~~iIVVlNKiDlv~~~~--------------------------~~---- 123 (614)
T PRK10512 81 VVACDDGVMAQTREHL----AIL-QL--TGNPMLTVALTKADRVDEAR--------------------------IA---- 123 (614)
T ss_pred EEECCCCCcHHHHHHH----HHH-HH--cCCCeEEEEEECCccCCHHH--------------------------HH----
Confidence 9999873 222222 222 22 2466 579999999862100 00
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhC---CceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeec
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG---VRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (253)
...++..++.+..+ .+++++||++|.|+++|++.|......... ...+-++.|+
T Consensus 124 -------------------~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~~~----~~~~~rl~Id 180 (614)
T PRK10512 124 -------------------EVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPEREHA----AQHRFRLAID 180 (614)
T ss_pred -------------------HHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhccccC----cCCCceEEEE
Confidence 11223344444443 689999999999999999999876544322 2334455555
Q ss_pred C
Q psy9621 241 K 241 (253)
Q Consensus 241 ~ 241 (253)
+
T Consensus 181 ~ 181 (614)
T PRK10512 181 R 181 (614)
T ss_pred E
Confidence 4
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.73 E-value=6.9e-17 Score=144.16 Aligned_cols=112 Identities=21% Similarity=0.177 Sum_probs=78.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCc----ccCccceeeEEEEEee--CCeE----------EEEEEEeCCCccccc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTT----FISTIGIDFKIKTVDL--KGKK----------IKLQIWDTAGQERFH 72 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~----------~~~~l~Dt~G~~~~~ 72 (253)
...|+++|++++|||||+++|.+...... ..+++|.++.+..... .+.. ..+.+|||||++.|.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 34799999999999999999986544322 2234443332221100 0111 127899999999999
Q ss_pred ccchhhhcCccEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 73 TITTSYYRGAMGIMLVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.++...+..+|++|+|+|+++ +.+++.+..+ . ..++|+++++||+|+.
T Consensus 86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~---~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 86 NLRKRGGALADIAILVVDINEGFQPQTIEAINIL----K---RRKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----H---HcCCCEEEEEECcCCc
Confidence 888888899999999999997 5555544321 1 1478999999999985
No 220
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=9.8e-17 Score=124.61 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=78.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCC-------CC----c---ccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAF-------NT----T---FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI 74 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~-------~~----~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 74 (253)
.++|+++|+.++|||||+++|+.... .. . ....-|++.......+..+..++.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 58999999999999999999975310 00 0 0012244444444445555667899999999888776
Q ss_pred chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
....+..+|++++|+|++..-.-. ....+..+.. .++| ++++.||+|+.
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~---~~~~~iIvviNK~D~~ 131 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ---VGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCcEEEEEeCCCCC
Confidence 777788999999999997643221 1222233322 3576 77889999985
No 221
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.72 E-value=8.4e-17 Score=135.64 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=107.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc--------hhh
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT--------TSY 78 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 78 (253)
..-+|++++|.||||||||+|.|++...... ..-.|.+.......++-+.+.+.+.||+|..+-.... ...
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIV-TdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIV-TDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEe-cCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4568999999999999999999997654332 1122333333333334344779999999976544333 345
Q ss_pred hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
+..+|.+++|+|.+.+.+-+.. ..+. ....+.|+++|.||.|+..+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~----------------------------- 339 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSK----------------------------- 339 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccc-----------------------------
Confidence 7899999999999986322221 1112 33367999999999999721
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
.. ...+....+.+++.+|+++|+|++.|.+.|.+.+...
T Consensus 340 -----------------~~----------~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 340 -----------------IE----------LESEKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred -----------------cc----------cchhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 11 1111112235789999999999999999999988776
No 222
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.71 E-value=8.9e-17 Score=116.52 Aligned_cols=135 Identities=23% Similarity=0.244 Sum_probs=91.1
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc----cccccchhhhcCccEEE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE----RFHTITTSYYRGAMGIM 86 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~~d~~i 86 (253)
||+++|+.|+|||||+++|.+... .+..|..+.|. =.++||||.- .|....-.....+|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999997543 22333332222 1347999941 11111122345899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
+|.|.+++.+.-. ..+.+. .+.|++-|.||+|+.
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~--------------------------------------- 102 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLP--------------------------------------- 102 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCc---------------------------------------
Confidence 9999998753211 111111 368999999999996
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHH
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELA 218 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~ 218 (253)
... ...+..+++.+..|+ ..|++|+.+|+|+++|.+.|-
T Consensus 103 -------~~~------~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 103 -------SDD------ANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred -------cch------hhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 111 233455667777775 679999999999999998874
No 223
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.71 E-value=3.6e-17 Score=129.78 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=73.2
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCC--CCC------------------------cc---cCccceeeEEEEEeeCCeEEEEE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDA--FNT------------------------TF---ISTIGIDFKIKTVDLKGKKIKLQ 61 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~--~~~------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~ 61 (253)
+|+++|+.++|||||+.+|+... ... .. ...-|++.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 68999999999999999986321 000 00 01113333333333444557799
Q ss_pred EEeCCCcccccccchhhhcCccEEEEEEeCCChh-------hHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK-------SFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 62 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-------s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
+|||||+..|.......+..+|++|+|+|+++.. ..+....+ ... ... ...|+++++||+|+.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~-~~~-~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLA-RTL-GVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHH-HHc-CCCeEEEEEEccccc
Confidence 9999999877766666778899999999998852 11111222 112 221 236899999999986
No 224
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.3e-16 Score=134.72 Aligned_cols=185 Identities=18% Similarity=0.165 Sum_probs=122.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.=|+++|+-.-|||||+..+........-...+.-......+..+ +....+.++|||||+.|..++..-..-+|++|+|
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV 85 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV 85 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence 358999999999999999999876655433322222223334333 1346799999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
+++++.-- .+..+.+......+.|++++.||+|.... .+... ..++
T Consensus 86 Va~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~---------------------------np~~v---~~el 131 (509)
T COG0532 86 VAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEA---------------------------NPDKV---KQEL 131 (509)
T ss_pred EEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCC---------------------------CHHHH---HHHH
Confidence 99998431 12233344444468999999999998621 00110 0110
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCCCC
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDR 245 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (253)
.++ --..+.++ +.++++||++|+|+++|+..+.......+..-.+.....-.-++.+...
T Consensus 132 ~~~-----------------gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dk 193 (509)
T COG0532 132 QEY-----------------GLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDK 193 (509)
T ss_pred HHc-----------------CCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEecc
Confidence 000 11122333 7899999999999999999988777666555555444444444444333
No 225
>PRK12736 elongation factor Tu; Reviewed
Probab=99.70 E-value=7.6e-16 Score=132.25 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=78.6
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCC--------------cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT--------------TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 71 (253)
..+.+||+++|+.++|||||+++|++..... .....-|++.......+......+.+|||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 3457899999999999999999997521100 00012244444444455555567899999999888
Q ss_pred cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
.......+..+|++++|+|++....-.. ...+..+.. .++| +++++||+|+.
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~---~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ---VGVPYLVVFLNKVDLV 141 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCEEEEEEEecCCc
Confidence 6655566678999999999986422111 222222222 3678 67889999986
No 226
>KOG1707|consensus
Probab=99.70 E-value=6.2e-17 Score=138.64 Aligned_cols=125 Identities=24% Similarity=0.366 Sum_probs=100.7
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR 80 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (253)
|..-..-..+||+++|+.|+|||||+..+....|++...+... ......++.-..+...+.||+..++-......-++
T Consensus 1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eir 78 (625)
T KOG1707|consen 1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIR 78 (625)
T ss_pred CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHh
Confidence 4455566789999999999999999999999998887554432 21122334444566899999977766666677789
Q ss_pred CccEEEEEEeCCChhhHHHHH-HHHHHHHHhcc--cccceeEEeeeeccc
Q psy9621 81 GAMGIMLVYDITNEKSFDNIL-KWLRNIDEHAN--EDVEKMILGKTKDTA 127 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~--~~~p~iiv~nK~D~~ 127 (253)
.+|++.++|+++++.+++.+. +|+..+++..+ ..+|+|+||||+|..
T Consensus 79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~ 128 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNG 128 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCc
Confidence 999999999999999999997 89999988864 579999999999987
No 227
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.69 E-value=6.7e-16 Score=132.74 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=78.8
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCC-------C----CCc---ccCccceeeEEEEEeeCCeEEEEEEEeCCCccc
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDA-------F----NTT---FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~-------~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 70 (253)
...+.++|+++|+.++|||||+++|++.. + ... ....-|++.....+.+......+.+|||||+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 35668999999999999999999997320 0 000 001123444444555555567799999999998
Q ss_pred ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccccee-EEeeeeccc
Q psy9621 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKM-ILGKTKDTA 127 (253)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~D~~ 127 (253)
|..........+|++++|+|++....-.. .+.+..+.. .++|.+ +++||+|+.
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~---~gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMV 141 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEecccC
Confidence 86655556678899999999987422221 122222222 367766 689999986
No 228
>PRK12735 elongation factor Tu; Reviewed
Probab=99.69 E-value=7.3e-16 Score=132.44 Aligned_cols=118 Identities=13% Similarity=0.067 Sum_probs=78.8
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcC-------CCCC-------cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDD-------AFNT-------TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 71 (253)
..+.++|+++|++++|||||+++|++. .+.. .....-|++.......+.....++.++||||++.|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 456789999999999999999999852 1100 00112244444444445545567899999999888
Q ss_pred cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccccee-EEeeeeccc
Q psy9621 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKM-ILGKTKDTA 127 (253)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~D~~ 127 (253)
.......+..+|++++|+|++....-.. .+.+..+. ..++|.+ +++||+|+.
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~---~~gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQT-REHILLAR---QVGVPYIVVFLNKCDMV 141 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHH---HcCCCeEEEEEEecCCc
Confidence 6666667789999999999987432111 22222222 2468866 579999986
No 229
>PRK00007 elongation factor G; Reviewed
Probab=99.69 E-value=2.4e-16 Score=144.10 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=85.8
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhc--CCCCC--ccc------------CccceeeEEEEEeeCCeEEEEEEEe
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSD--DAFNT--TFI------------STIGIDFKIKTVDLKGKKIKLQIWD 64 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~--~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D 64 (253)
|-.++.+...||+++|++++|||||+++|+. +.... ... ..-|++.......+......+.++|
T Consensus 2 ~~~~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liD 81 (693)
T PRK00007 2 ARETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIID 81 (693)
T ss_pred CCcCcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEe
Confidence 4455677899999999999999999999973 11100 000 1112333333333333456799999
Q ss_pred CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 130 (253)
|||+..|.......++.+|++|+|+|+...-.-+....| ..+.. .++|++++.||+|+.++.
T Consensus 82 TPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~---~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 82 TPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK---YKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred CCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH---cCCCEEEEEECCCCCCCC
Confidence 999988877677788999999999998765433332222 22222 468999999999998655
No 230
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.69 E-value=4.2e-16 Score=123.59 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=71.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccC-----------------------ccceeeEEEEEe-------------eC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFIS-----------------------TIGIDFKIKTVD-------------LK 54 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~-------------~~ 54 (253)
||+++|+.++|||||+.+|..+.+...... ..|++.....+. ..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999987655432110 111121110000 01
Q ss_pred CeEEEEEEEeCCCcccccccchhhhc--CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 55 GKKIKLQIWDTAGQERFHTITTSYYR--GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.....+.++||||++.|.......+. .+|++++|+|++....- ....++..+.. .++|++++.||+|+.
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~---~~ip~ivvvNK~D~~ 151 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA---LNIPVFVVVTKIDLA 151 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 12346899999999888654444443 68999999998765321 12233333322 468999999999986
No 231
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.69 E-value=2.5e-16 Score=124.42 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=78.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCC--CCc----cc--------Cccceee--EEEEEeeC--------CeEEEEEEEeCC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAF--NTT----FI--------STIGIDF--KIKTVDLK--------GKKIKLQIWDTA 66 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~--~~~----~~--------~~~~~~~--~~~~~~~~--------~~~~~~~l~Dt~ 66 (253)
+|+++|+.++|||||+.+|+...- ... .. ..-|++. ....+.+. +....+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999974321 100 00 0011121 11122222 347889999999
Q ss_pred CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
|++.|......+++.+|++|+|+|+++..+......+ .... ..++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCCcc
Confidence 9999999999999999999999999987655442222 2222 2468999999999985
No 232
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.69 E-value=7.5e-16 Score=135.19 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=114.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc------cccchhhh--c
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF------HTITTSYY--R 80 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~--~ 80 (253)
.++|+++|.||||||||+|++.+.+....--|.+ +...++-.+..+...++++|.||--.. +...+.|+ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGv--TVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGV--TVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCe--eEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 4569999999999999999999877665545544 444444444444455999999995332 22233444 3
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
.+|++|-|+|+++.+.--++. .+..+-++|++++.|++|.+.
T Consensus 81 ~~D~ivnVvDAtnLeRnLylt------lQLlE~g~p~ilaLNm~D~A~-------------------------------- 122 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLT------LQLLELGIPMILALNMIDEAK-------------------------------- 122 (653)
T ss_pred CCCEEEEEcccchHHHHHHHH------HHHHHcCCCeEEEeccHhhHH--------------------------------
Confidence 679999999999876433332 222335899999999999872
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
.. -..-..+++.+.+|+|++++||++|.|++++...+.+....+..
T Consensus 123 --------------~~------Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 123 --------------KR------GIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAESKTT 168 (653)
T ss_pred --------------hc------CCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcccccc
Confidence 21 22334678899999999999999999999999999877666553
No 233
>KOG1423|consensus
Probab=99.68 E-value=6e-16 Score=123.25 Aligned_cols=188 Identities=14% Similarity=0.071 Sum_probs=116.0
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc------------
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT------------ 73 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------ 73 (253)
..+.++|+|||.||+|||||.|.+.+.+..+..+.+..... ...-.+..+..++.++||||.-.-..
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~-~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRH-RILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceee-eeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 46789999999999999999999999988877665543222 23333445678899999999521100
Q ss_pred cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEecc
Q psy9621 74 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDIT 153 (253)
Q Consensus 74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (253)
-....+..+|.+++++|+++....-. .+.+..+..+. .+|-+++.||+|...+++.--.. .-..+
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l------------~~~Lt 212 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNL------------KDLLT 212 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhh------------HHhcc
Confidence 11235678999999999996332211 24455555554 79999999999998654430000 00000
Q ss_pred CccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC----ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 154 NEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV----RFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
+.+.-..-++|+++....- ..+.+....|. .+|.+||++|+||+++-++|......
T Consensus 213 ~g~l~~~kl~v~~~f~~~p--------------~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 213 NGELAKLKLEVQEKFTDVP--------------SDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred ccccchhhhhHHHHhccCC--------------cccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 0000011233333322211 01111122222 58999999999999999998876544
No 234
>PRK12739 elongation factor G; Reviewed
Probab=99.68 E-value=3.3e-16 Score=143.25 Aligned_cols=123 Identities=17% Similarity=0.151 Sum_probs=83.6
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCC--CCC--ccc------------CccceeeEEEEEeeCCeEEEEEEEeCCC
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDA--FNT--TFI------------STIGIDFKIKTVDLKGKKIKLQIWDTAG 67 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~--~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 67 (253)
++.+..+||+++|++++|||||+++|+... ... ... ..-|++.......+..+..++.+|||||
T Consensus 3 ~~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG 82 (691)
T PRK12739 3 FPLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPG 82 (691)
T ss_pred CCccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCC
Confidence 456678999999999999999999997421 000 000 0112222222222333456799999999
Q ss_pred cccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 130 (253)
+..|.......++.+|++|+|+|++....-... ..+..+. ..++|+++++||+|+.+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~---~~~~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQAD---KYGVPRIVFVNKMDRIGAD 141 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCCCCCC
Confidence 988887888889999999999999876433222 2222222 2468999999999998653
No 235
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.68 E-value=8.7e-16 Score=134.37 Aligned_cols=119 Identities=17% Similarity=0.089 Sum_probs=75.2
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcc------------c-------------------CccceeeEEEEEeeC
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTF------------I-------------------STIGIDFKIKTVDLK 54 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~~ 54 (253)
....+||+++|+.++|||||+.+|+...-.... . ..-|++.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 456799999999999999999999743211000 0 001222222233334
Q ss_pred CeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 55 GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
....++.+|||||++.|.......+..+|++++|+|++....-.....+ . +.... ...|+++++||+|+.
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~-l~~~l-g~~~iIvvvNKiD~~ 173 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-F-IATLL-GIKHLVVAVNKMDLV 173 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-H-HHHHh-CCCceEEEEEeeccc
Confidence 4456799999999988865555557999999999998764221111111 1 11111 124788999999986
No 236
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.66 E-value=5.4e-16 Score=134.61 Aligned_cols=118 Identities=15% Similarity=0.111 Sum_probs=79.7
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCC--CC------------------------c---ccCccceeeEEEEEeeCCe
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAF--NT------------------------T---FISTIGIDFKIKTVDLKGK 56 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~--~~------------------------~---~~~~~~~~~~~~~~~~~~~ 56 (253)
.-+.++|+++|+.++|||||+.+|+...- .. + ....-|++.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 34578999999999999999999873110 00 0 0011233444344445556
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHH-------HHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD-------NILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~-------~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
...+.++||||+++|.......+..+|++|+|+|+++. .|+ ...+.+.... ..++| +++++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~---~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF---TLGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH---HcCCCcEEEEEEcccCC
Confidence 67899999999999988888889999999999999863 232 1122211111 24675 68889999975
No 237
>KOG1489|consensus
Probab=99.65 E-value=3.1e-15 Score=119.77 Aligned_cols=148 Identities=17% Similarity=0.252 Sum_probs=106.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCc------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc----cccchhhh-
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTT------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF----HTITTSYY- 79 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~~~~- 79 (253)
.|.+||.||+|||||++++...+.... -.|.+| ++.++ +..++.+=|.||..+- ..+-..|+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG------~v~yd-df~q~tVADiPGiI~GAh~nkGlG~~FLr 270 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG------TVNYD-DFSQITVADIPGIIEGAHMNKGLGYKFLR 270 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc------eeecc-ccceeEeccCccccccccccCcccHHHHH
Confidence 578999999999999999997644221 122222 12222 2234899999996543 44444555
Q ss_pred --cCccEEEEEEeCCCh---hhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621 80 --RGAMGIMLVYDITNE---KSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI 152 (253)
Q Consensus 80 --~~~d~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (253)
..|+.+++|+|++.. ..|+.+..+..+++.+.+ .+.|.+||+||+|+..
T Consensus 271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e------------------------ 326 (366)
T KOG1489|consen 271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE------------------------ 326 (366)
T ss_pred HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh------------------------
Confidence 468999999999998 778888877777766653 6899999999999841
Q ss_pred cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCc-eEEeeccCCCCHHHHHHHHHH
Q psy9621 153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVR-FMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
-......++++++.-+ ++++||++++|+..+++.|..
T Consensus 327 ------------------------------ae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 327 ------------------------------AEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred ------------------------------HHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 1112246777777654 999999999999999988764
No 238
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.65 E-value=2.9e-15 Score=126.08 Aligned_cols=165 Identities=18% Similarity=0.134 Sum_probs=106.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----------cccc-ch
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----------FHTI-TT 76 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~-~~ 76 (253)
..+||+++|.|++|||||+|++++..-... .+.-|.+.......+..+...+.++||+|-.. |... ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv-~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIV-SDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEe-cCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 469999999999999999999997543322 22234444444444443445699999999532 2111 13
Q ss_pred hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621 77 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK 156 (253)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (253)
..+..+|++++|+|++.+.+-+..+ ....+.. .+.+++|+.||-|+...
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~~vIvvNKWDl~~~--------------------------- 304 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRGIVIVVNKWDLVEE--------------------------- 304 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCCeEEEEEccccCCc---------------------------
Confidence 4567899999999999876544432 2223332 57899999999998621
Q ss_pred chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
+..... .............+ .+.+++||++|.|++.+|+.+.......
T Consensus 305 -------------------~~~~~~-~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 305 -------------------DEATME-EFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred -------------------hhhHHH-HHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence 110000 00111112122223 6999999999999999999887765543
No 239
>COG2262 HflX GTPases [General function prediction only]
Probab=99.65 E-value=5e-15 Score=122.91 Aligned_cols=161 Identities=14% Similarity=0.109 Sum_probs=108.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc--cccchh------h
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF--HTITTS------Y 78 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~------~ 78 (253)
.....|.++|-+|+|||||+|++.+........-.-..+-....+.+.+ ...+.+-||.|.... ..+... -
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 4567899999999999999999996443322111112233444555554 345889999997432 122222 2
Q ss_pred hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
...+|+++.|+|+++|...+.+.....-+......++|+++|.||+|+..
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~------------------------------ 318 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLE------------------------------ 318 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccC------------------------------
Confidence 46899999999999997666666555555554446799999999999761
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
.. .....+....+ ..+.+||++|.|++.|++.|...+...
T Consensus 319 ----------------~~---------~~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 319 ----------------DE---------EILAELERGSP-NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred ----------------ch---------hhhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 11 01111111112 579999999999999999999988754
No 240
>CHL00071 tufA elongation factor Tu
Probab=99.65 E-value=5.5e-15 Score=127.53 Aligned_cols=117 Identities=13% Similarity=0.082 Sum_probs=78.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCC------c--------ccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT------T--------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH 72 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 72 (253)
.+.++|+++|++++|||||+++|++..-.. . ....-|++.......+..+..++.++||||+..|.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 467999999999999999999998531110 0 00112444443344444455678899999998886
Q ss_pred ccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 73 TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
......+..+|++++|+|+.....-. ....+..+.. .++| ++++.||+|+.
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~---~g~~~iIvvvNK~D~~ 141 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQ---VGVPNIVVFLNKEDQV 141 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEccCCC
Confidence 66666778999999999998643211 1222222222 4688 67889999986
No 241
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=5.2e-15 Score=112.17 Aligned_cols=163 Identities=14% Similarity=0.172 Sum_probs=108.2
Q ss_pred CccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc----------ccc
Q psy9621 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ----------ERF 71 (253)
Q Consensus 2 ~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~ 71 (253)
.+.|.+...-|+++|-+|||||||+|++.+.+.-.-...|.|.+.....+.+.+. +.++|.||- +.+
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w 93 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKW 93 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHH
Confidence 3557788889999999999999999999986643333455565555444554443 889999994 455
Q ss_pred cccchhhhcC---ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEE
Q psy9621 72 HTITTSYYRG---AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIML 148 (253)
Q Consensus 72 ~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 148 (253)
..+...|+.. ..++++++|+-.+-.-.+. +.++-+. ..++|+++++||+|-..
T Consensus 94 ~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~---~~~i~~~vv~tK~DKi~-------------------- 149 (200)
T COG0218 94 KKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLL---ELGIPVIVVLTKADKLK-------------------- 149 (200)
T ss_pred HHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHH---HcCCCeEEEEEccccCC--------------------
Confidence 6666667653 5678888898765432222 2222222 25899999999999762
Q ss_pred EEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh----CCc--eEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 149 VYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY----GVR--FMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
..+ . .......++.. ... ++..|+.++.|++++...|...+.
T Consensus 150 --------------------------~~~-----~-~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 150 --------------------------KSE-----R-NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred --------------------------hhH-----H-HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 111 0 01112233232 222 789999999999999999887764
Q ss_pred h
Q psy9621 223 D 223 (253)
Q Consensus 223 ~ 223 (253)
.
T Consensus 198 ~ 198 (200)
T COG0218 198 E 198 (200)
T ss_pred c
Confidence 3
No 242
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.65 E-value=2e-15 Score=130.12 Aligned_cols=115 Identities=16% Similarity=0.073 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcc-------------------------------cCccceeeEEEEEeeCCeEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTF-------------------------------ISTIGIDFKIKTVDLKGKKI 58 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 58 (253)
+||+++|+.++|||||+.+|+...-.... ...-|++.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999632110000 00112222222333333456
Q ss_pred EEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
++.+|||||++.|.......+..+|++|+|+|++....-+....+ ..+.. . ...++++++||+|+.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~-~-~~~~iivviNK~D~~ 146 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASL-L-GIRHVVLAVNKMDLV 146 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHH-c-CCCcEEEEEEecccc
Confidence 799999999998876666678899999999998765322221111 11111 1 223588899999986
No 243
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.65 E-value=8e-15 Score=114.45 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=68.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccce---eeEEEEEeeCCeEEEEEEEeCCCcccccccchh-----hhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGI---DFKIKTVDLKGKKIKLQIWDTAGQERFHTITTS-----YYR 80 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-----~~~ 80 (253)
.+||+++|.+|+|||||+|.+.+.........+.+. +.....+... ....+.+|||||.......... .+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 379999999999999999999985544322222221 1111111111 1236899999997543222222 356
Q ss_pred CccEEEEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 81 GAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.+|+++++.+- ++... ..|++.+... +.|+++|+||+|+.
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~ 120 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRD 120 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccch
Confidence 78998887432 23333 3455555443 57999999999985
No 244
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=5.1e-16 Score=122.39 Aligned_cols=182 Identities=16% Similarity=0.198 Sum_probs=116.3
Q ss_pred ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc-------ccccc
Q psy9621 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER-------FHTIT 75 (253)
Q Consensus 3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~ 75 (253)
+......++|+++|.+|+|||||+|+++.+...+...-..+.+.....+... ..-.+.+||+||-++ |+.+.
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~~~r~~~ 111 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDAEHRQLY 111 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc-cccceEEecCCCcccchhhhHHHHHHH
Confidence 4456678999999999999999999999766555433233333332222111 224599999999765 56667
Q ss_pred hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621 76 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE 155 (253)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (253)
..++...|.++++.++.++.- ..-.++++.+.... -+.+++++.|..|.+...
T Consensus 112 ~d~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~------------------------- 164 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILG-LDKRVLFVVTQADRAEPG------------------------- 164 (296)
T ss_pred HHHhhhccEEEEeccCCCccc-cCCHHHHHHHHHhc-cCceeEEEEehhhhhccc-------------------------
Confidence 778899999999999988852 22234444444433 458999999999987431
Q ss_pred cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh--CCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY--GVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..|...- ..+............+...+.. --|++.+|...++|++.+...+++.+..
T Consensus 165 ------~~W~~~~-----~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 165 ------REWDSAG-----HQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred ------ccccccc-----CCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 0111100 0111111112222233333332 2599999999999999999999988863
No 245
>KOG0462|consensus
Probab=99.64 E-value=3.5e-15 Score=127.09 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=120.1
Q ss_pred ccccCceeEEEEEcCCCCcHHHHHHHhhcCCC--CC-----------cccCccceeeEEEEEeeC---CeEEEEEEEeCC
Q psy9621 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAF--NT-----------TFISTIGIDFKIKTVDLK---GKKIKLQIWDTA 66 (253)
Q Consensus 3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~--~~-----------~~~~~~~~~~~~~~~~~~---~~~~~~~l~Dt~ 66 (253)
..|.+...|+.+|-+-.=|||||..|++...- +. .....-|++...++.... +..+.++++|||
T Consensus 54 ~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTP 133 (650)
T KOG0462|consen 54 LDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTP 133 (650)
T ss_pred cCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCC
Confidence 34668889999999999999999999974211 11 011223556555554443 444889999999
Q ss_pred CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceee
Q psy9621 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGI 146 (253)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (253)
||-+|....+..+.-|+++|+|+|++..-.-+.+..++..+ +.+..+|.|+||+|+..++
T Consensus 134 GHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf----e~~L~iIpVlNKIDlp~ad---------------- 193 (650)
T KOG0462|consen 134 GHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF----EAGLAIIPVLNKIDLPSAD---------------- 193 (650)
T ss_pred CcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH----HcCCeEEEeeeccCCCCCC----------------
Confidence 99999999999999999999999998764444444433333 3578999999999997421
Q ss_pred EEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 147 MLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
++ .-..+..++....+-+.+.+||++|.|++++++.+++.+.--.
T Consensus 194 -----------------------------pe-----~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 194 -----------------------------PE-----RVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred -----------------------------HH-----HHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 11 1112222333233348899999999999999999998886543
No 246
>PRK00049 elongation factor Tu; Reviewed
Probab=99.64 E-value=8e-15 Score=125.95 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=81.7
Q ss_pred CCcccc---CceeEEEEEcCCCCcHHHHHHHhhcCCCC-------C-------cccCccceeeEEEEEeeCCeEEEEEEE
Q psy9621 1 MAKKTY---DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-------T-------TFISTIGIDFKIKTVDLKGKKIKLQIW 63 (253)
Q Consensus 1 m~~~~~---~~~~ki~vvG~~~~GKStL~~~l~~~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 63 (253)
|++..+ .+.++|+++|+.++|||||+++|++.... . .....-|++.......+.....++.++
T Consensus 1 ~~~~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~i 80 (396)
T PRK00049 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHV 80 (396)
T ss_pred CchhhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEE
Confidence 455433 36899999999999999999999862110 0 000122444444444454455678999
Q ss_pred eCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccccee-EEeeeeccc
Q psy9621 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKM-ILGKTKDTA 127 (253)
Q Consensus 64 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~D~~ 127 (253)
||||+.+|.......+..+|++++|+|+.....-. ....+..+.. .++|.+ ++.||+|+.
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~---~g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMV 141 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH---cCCCEEEEEEeecCCc
Confidence 99999887666666778999999999998653222 1223333322 368976 589999986
No 247
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.63 E-value=4.8e-15 Score=117.15 Aligned_cols=168 Identities=14% Similarity=0.239 Sum_probs=101.2
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEee-CCeEEEEEEEeCCCcccccc-----cchhhhcCccE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDL-KGKKIKLQIWDTAGQERFHT-----ITTSYYRGAMG 84 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~d~ 84 (253)
||+++|+.|+||||+.+.+..+..+.. ...++.+.......+ ......+.+||+||+..+.. .....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999998887654433 222222222222222 23456899999999976533 45778999999
Q ss_pred EEEEEeCCChhh---HHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621 85 IMLVYDITNEKS---FDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 161 (253)
Q Consensus 85 ~ilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
+|+|+|+.+.+- +......+..+.+.. +++.+.++.+|+|+.....
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~------------------------------ 128 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDE------------------------------ 128 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHH------------------------------
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHH------------------------------
Confidence 999999985443 333444555555554 7899999999999862211
Q ss_pred HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC---CceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG---VRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
+..... ...+...+.+...+ +.++.||..+ ..+-+++..++..+..+..
T Consensus 129 --------------r~~~~~-~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 129 --------------REEIFR-DIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp --------------HHHHHH-HHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred --------------HHHHHH-HHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcccHH
Confidence 000000 11222333333444 7888888887 4888888888887765443
No 248
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.63 E-value=4.8e-16 Score=117.69 Aligned_cols=118 Identities=23% Similarity=0.360 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEee-CCeEEEEEEEeCCCcccccccchh---hhcCccEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDL-KGKKIKLQIWDTAGQERFHTITTS---YYRGAMGI 85 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~~ 85 (253)
-.|+++|+.|+|||+|+.+|..+...++..+. .-.. ...+ ......+.++|+|||.+.+..... +.+.+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 46999999999999999999998665553333 2111 1222 223456999999999988764433 47889999
Q ss_pred EEEEeCCC-hhhHHHHHHHHHHHHHhc---ccccceeEEeeeeccccccc
Q psy9621 86 MLVYDITN-EKSFDNILKWLRNIDEHA---NEDVEKMILGKTKDTAGQER 131 (253)
Q Consensus 86 ilv~d~~~-~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~ 131 (253)
|||+|.+. ...+..+.+++..++... ...+|++|+.||.|+..++.
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 99999874 445666666666655443 37899999999999986544
No 249
>PLN03126 Elongation factor Tu; Provisional
Probab=99.62 E-value=1.8e-14 Score=125.73 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=80.2
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCC------CCCc--------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA------FNTT--------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 71 (253)
..+.+||+++|+.++|||||+++|+... .... .....|++.......+......+.+||+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4568999999999999999999998521 1110 0112244443333334444567899999999998
Q ss_pred cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
.......+..+|++++|+|+.+...-.. .+++..+.. .++| ++++.||+|+.
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~---~gi~~iIvvvNK~Dl~ 210 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQV 210 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeccccc
Confidence 7766677789999999999886533222 233333322 3678 67889999986
No 250
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.62 E-value=6.6e-15 Score=133.69 Aligned_cols=122 Identities=14% Similarity=0.064 Sum_probs=76.3
Q ss_pred ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcc------------c----C---------------ccceeeEEEEE
Q psy9621 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTF------------I----S---------------TIGIDFKIKTV 51 (253)
Q Consensus 3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~------------~----~---------------~~~~~~~~~~~ 51 (253)
+......++|+++|++++|||||+++|+...-.... . . .-|++......
T Consensus 18 ~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~ 97 (632)
T PRK05506 18 QHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYR 97 (632)
T ss_pred hccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeee
Confidence 345566799999999999999999999853211100 0 0 01122222222
Q ss_pred eeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 52 DLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 52 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.+.....++.++||||++.|.......+..+|++++|+|++....-.... .+..+... ...|+++++||+|+.
T Consensus 98 ~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~~~~~~--~~~~iivvvNK~D~~ 170 (632)
T PRK05506 98 YFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSFIASLL--GIRHVVLAVNKMDLV 170 (632)
T ss_pred EEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHHHHHHh--CCCeEEEEEEecccc
Confidence 23334456889999999887655555678999999999997653211111 11112211 235788899999986
No 251
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=1.4e-14 Score=121.74 Aligned_cols=168 Identities=18% Similarity=0.205 Sum_probs=122.4
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-------------ccCccceeeEEEEEee-----CCeEEEEEE
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-------------FISTIGIDFKIKTVDL-----KGKKIKLQI 62 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~-----~~~~~~~~l 62 (253)
|...+.....|.+++-+-.=|||||..|++...-.-+ ...--|++...+.+.+ ++.++.+++
T Consensus 1 ~~~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnl 80 (603)
T COG0481 1 MTFTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNL 80 (603)
T ss_pred CCccchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEE
Confidence 4456777888999999999999999999973211100 0112245554444433 346789999
Q ss_pred EeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccccccccc
Q psy9621 63 WDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRG 142 (253)
Q Consensus 63 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~ 142 (253)
+|||||-.|....+..+..|.++++|+|++..-.-+.+...+..+ +++.-++.|+||+|+..+
T Consensus 81 IDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl----e~~LeIiPViNKIDLP~A------------- 143 (603)
T COG0481 81 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENNLEIIPVLNKIDLPAA------------- 143 (603)
T ss_pred cCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH----HcCcEEEEeeecccCCCC-------------
Confidence 999999999999999999999999999999875555555554444 457899999999999732
Q ss_pred ceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHH
Q psy9621 143 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
+ ......++-.-+|+ ..+.+||++|.||+++++.|+.
T Consensus 144 ---------------------------------d-------pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~ 183 (603)
T COG0481 144 ---------------------------------D-------PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVE 183 (603)
T ss_pred ---------------------------------C-------HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHh
Confidence 1 11223344444553 5699999999999999999999
Q ss_pred HHHhcc
Q psy9621 220 AIYDKT 225 (253)
Q Consensus 220 ~~~~~~ 225 (253)
.+..-.
T Consensus 184 ~iP~P~ 189 (603)
T COG0481 184 KIPPPK 189 (603)
T ss_pred hCCCCC
Confidence 887643
No 252
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.60 E-value=3.1e-14 Score=118.09 Aligned_cols=81 Identities=19% Similarity=0.316 Sum_probs=57.6
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCC------CcccCccceeeEEEE---------------EeeCC-eEEEEEEEeCCCc-
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDDAFN------TTFISTIGIDFKIKT---------------VDLKG-KKIKLQIWDTAGQ- 68 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~~~~------~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~l~Dt~G~- 68 (253)
|+++|.|+||||||++++.+.... .+..|++|..+.... ...++ +.+.+++|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987643 223455554443211 00122 3467999999998
Q ss_pred ---ccccccchhh---hcCccEEEEEEeCC
Q psy9621 69 ---ERFHTITTSY---YRGAMGIMLVYDIT 92 (253)
Q Consensus 69 ---~~~~~~~~~~---~~~~d~~ilv~d~~ 92 (253)
+++.++...+ ++.+|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5566665555 89999999999997
No 253
>PRK12740 elongation factor G; Reviewed
Probab=99.60 E-value=6.2e-15 Score=134.92 Aligned_cols=112 Identities=22% Similarity=0.261 Sum_probs=76.1
Q ss_pred EcCCCCcHHHHHHHhhcCCCC--------Cc-----cc---CccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhh
Q psy9621 15 IGDSGVGKTCVLFRFSDDAFN--------TT-----FI---STIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSY 78 (253)
Q Consensus 15 vG~~~~GKStL~~~l~~~~~~--------~~-----~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 78 (253)
+|+.|+|||||+++|+...-. .. +. ..-+++.......+......+.+|||||+..|...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999532110 00 00 011222222222333345789999999998887777888
Q ss_pred hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 130 (253)
+..+|++|+|+|++..........| ..+. ..++|+++++||+|+...+
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~---~~~~p~iiv~NK~D~~~~~ 128 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAE---KYGVPRIIFVNKMDRAGAD 128 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH-HHHH---HcCCCEEEEEECCCCCCCC
Confidence 9999999999999887655544333 2222 2478999999999998654
No 254
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.60 E-value=1.3e-14 Score=118.70 Aligned_cols=116 Identities=17% Similarity=0.322 Sum_probs=76.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCc----------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc---
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT----------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT--- 73 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--- 73 (253)
...+||+|+|.+|+|||||+++|++..+... ..++.+++.....+..++..+.+.+|||||......
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 3578999999999999999999998776543 344555555555666667778999999999543211
Q ss_pred -----------------------cchhhhc--CccEEEEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 74 -----------------------ITTSYYR--GAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 74 -----------------------~~~~~~~--~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.+...+. .+|+++++++.+.. .+... ...+..+ . ..+|+++|+||+|+.
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l---~-~~v~vi~VinK~D~l 156 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRL---S-KRVNIIPVIAKADTL 156 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHH---h-ccCCEEEEEECCCcC
Confidence 1112233 35667777776542 12111 2223333 2 368999999999985
No 255
>KOG3905|consensus
Probab=99.60 E-value=3.3e-14 Score=114.19 Aligned_cols=171 Identities=18% Similarity=0.314 Sum_probs=123.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEee--CCeEEEEEEEeCCCcccccccchhhhcCc----cE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDL--KGKKIKLQIWDTAGQERFHTITTSYYRGA----MG 84 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----d~ 84 (253)
+|+|+|+.|+|||||+.++-+.. .+.+.-|..|....+.- ++...++.+|-..|...+.++....+... -+
T Consensus 54 ~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 54 NVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred eEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 89999999999999999998743 44555566776555532 34457789999999877777777666543 36
Q ss_pred EEEEEeCCChhh-HHHHHHHHHHHHHhccc--------------------------------------------------
Q psy9621 85 IMLVYDITNEKS-FDNILKWLRNIDEHANE-------------------------------------------------- 113 (253)
Q Consensus 85 ~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~-------------------------------------------------- 113 (253)
+|++.|+++|.+ ++.+.+|..-+.++...
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 788999999955 67777888776655411
Q ss_pred -----------ccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhh
Q psy9621 114 -----------DVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW 182 (253)
Q Consensus 114 -----------~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (253)
++|+++|.+|+|.. .-+..-.+.-++++ .
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~-------------------------------s~leke~eyrDehf----d----- 250 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAV-------------------------------SVLEKEHEYRDEHF----D----- 250 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchh-------------------------------hHhhhcchhhHHHH----H-----
Confidence 47777777777763 11111111112222 1
Q ss_pred ccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 183 VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
......+.||.++|..+|++|+++..|++-|+..|+..++--
T Consensus 251 fiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~ 292 (473)
T KOG3905|consen 251 FIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF 292 (473)
T ss_pred HHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence 455678999999999999999999999999999999887653
No 256
>KOG0077|consensus
Probab=99.59 E-value=1.9e-15 Score=109.71 Aligned_cols=124 Identities=20% Similarity=0.291 Sum_probs=97.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
+.=|++++|-.|+|||||++.+.+.+...- .||. .+..-.+...+.++..+|.+|+..-+..++.++..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTl----HPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTL----HPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccccc-CCCc----CCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 344899999999999999999997665433 2222 11111223356789999999999889899999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeecccccccccccc
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTIT 136 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~ 136 (253)
.+|+-+.+.|...+..++.+..... ...|++|.+||+|..++-+..+.+
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~ 143 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELR 143 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHH
Confidence 9999999999999888887766542 789999999999999886554444
No 257
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.59 E-value=1.1e-14 Score=126.65 Aligned_cols=118 Identities=16% Similarity=0.105 Sum_probs=78.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcC--CCCC------------------------cc---cCccceeeEEEEEeeCCeE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDD--AFNT------------------------TF---ISTIGIDFKIKTVDLKGKK 57 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~------------------------~~---~~~~~~~~~~~~~~~~~~~ 57 (253)
.+.++|+++|+.++|||||+.+|+.. .... +. ...-|++.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 45689999999999999999998751 1110 00 0112344444444455566
Q ss_pred EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh---hH---HHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK---SF---DNILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
..+.++||||+.+|.......+..+|++|+|+|++... .+ ....+.+..+.. .++| ++++.||+|..
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDK 158 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence 78999999999999777777789999999999998642 11 111121222222 4677 56899999953
No 258
>PLN03127 Elongation factor Tu; Provisional
Probab=99.59 E-value=6.3e-14 Score=121.69 Aligned_cols=119 Identities=14% Similarity=0.068 Sum_probs=77.9
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcC------CCCCc--------ccCccceeeEEEEEeeCCeEEEEEEEeCCCccc
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDD------AFNTT--------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 70 (253)
..-+.++|+++|+.++|||||+++|.+. ..... ....-|++.......+.....++.++||||+..
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 3456799999999999999999999621 10000 001123344444445555566789999999988
Q ss_pred ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccce-eEEeeeeccc
Q psy9621 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEK-MILGKTKDTA 127 (253)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~D~~ 127 (253)
|..........+|++++|+|++....-+. .+.+..+.. .++|. +++.||+|+.
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~---~gip~iIvviNKiDlv 190 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVVFLNKVDVV 190 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEeeccC
Confidence 86655556678999999999876532111 222222222 46884 6789999986
No 259
>KOG0090|consensus
Probab=99.58 E-value=4.6e-15 Score=112.38 Aligned_cols=188 Identities=18% Similarity=0.245 Sum_probs=114.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc---CccEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR---GAMGIM 86 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~~i 86 (253)
-.|+++|+.++|||+|+.+|..+.....+. .+.+....+..+.-.++++|.|||.+.+.-...+++ .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-----Siepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-----SIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee-----eeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 479999999999999999999874443322 222222223323334899999999887766666666 788999
Q ss_pred EEEeCCC-hhhHHHHHHHHHHHHHhc---ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 87 LVYDITN-EKSFDNILKWLRNIDEHA---NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 87 lv~d~~~-~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
||+|... +.....+.+++-.+.... .+.+|++|+.||.|+..++.++.+++... ...+.++
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LE---------------kEi~~lr 178 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLE---------------KEIHKLR 178 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHH---------------HHHHHHH
Confidence 9998653 334555555555544433 58899999999999998887766665311 1111111
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHH--HHHH--HhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGE--AIAR--EYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
+-+....... ......+......+. +|.. ...+.+.++|++++ +++++-++|.+.
T Consensus 179 ~sRsa~~~~~--~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 179 ESRSALRSIS--DEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred HHHhhhhccc--cccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1111000000 000000112222222 2322 23478999999999 999999988764
No 260
>KOG1145|consensus
Probab=99.58 E-value=4.4e-14 Score=120.49 Aligned_cols=183 Identities=17% Similarity=0.163 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
.-|-++|+-.=|||||+..|.+......-...+.-.....++.+..+ ..+.+.|||||..|..|+..-....|++++|+
T Consensus 154 PVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVV 232 (683)
T KOG1145|consen 154 PVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLVV 232 (683)
T ss_pred CeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEEE
Confidence 45789999999999999999976655432222211122334444433 56999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
.++|.-- .+.++.|......+.|+++++||+|..++
T Consensus 233 AadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a---------------------------------------- 268 (683)
T KOG1145|consen 233 AADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGA---------------------------------------- 268 (683)
T ss_pred EccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCC----------------------------------------
Confidence 9887531 22333344444478999999999997632
Q ss_pred hhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCCC
Q psy9621 170 EHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPD 244 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (253)
+++.....+.. .--..+.+| ++++++||++|.|++.|-+.+.....-....-+|.....-.-|++.=.
T Consensus 269 -----~pekv~~eL~~--~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vd 338 (683)
T KOG1145|consen 269 -----NPEKVKRELLS--QGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVD 338 (683)
T ss_pred -----CHHHHHHHHHH--cCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeec
Confidence 11110000000 011233454 899999999999999999988877766666666655554555554433
No 261
>KOG1144|consensus
Probab=99.56 E-value=8.1e-15 Score=128.48 Aligned_cols=184 Identities=16% Similarity=0.122 Sum_probs=116.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCc----ccCccceeeEEEEE--------ee----CCeEEEEEEEeCCCccccccc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTT----FISTIGIDFKIKTV--------DL----KGKKIKLQIWDTAGQERFHTI 74 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~----~~~~~~~~~~~~~~--------~~----~~~~~~~~l~Dt~G~~~~~~~ 74 (253)
=|||+|+..+|||-|+..+...+.... ....+|.+|.+..- .- +.+...+.++||||++.|.++
T Consensus 477 IcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnl 556 (1064)
T KOG1144|consen 477 ICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNL 556 (1064)
T ss_pred eEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhh
Confidence 489999999999999999987554432 23445555554320 00 122346899999999999999
Q ss_pred chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
++.....||.+|+|+|+-..-.- +.++.|.-....+.|+||++||+|.. +-|....
T Consensus 557 RsrgsslC~~aIlvvdImhGlep----qtiESi~lLR~rktpFivALNKiDRL--------------------Ygwk~~p 612 (1064)
T KOG1144|consen 557 RSRGSSLCDLAILVVDIMHGLEP----QTIESINLLRMRKTPFIVALNKIDRL--------------------YGWKSCP 612 (1064)
T ss_pred hhccccccceEEEEeehhccCCc----chhHHHHHHHhcCCCeEEeehhhhhh--------------------cccccCC
Confidence 99999999999999998653111 22333333444689999999999975 3334344
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH------------hC--CceEEeeccCCCCHHHHHHHHHHH
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE------------YG--VRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~--~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
..++.+...-+..-.......+ .....-+|+++ .+ +.++++||.+|+||.+|+.+|+..
T Consensus 613 ~~~i~~~lkkQ~k~v~~EF~~R-------~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 613 NAPIVEALKKQKKDVQNEFKER-------LNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred CchHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 4444444332221111100000 00011122211 12 688999999999999999998876
Q ss_pred HHhcc
Q psy9621 221 IYDKT 225 (253)
Q Consensus 221 ~~~~~ 225 (253)
....+
T Consensus 686 tQk~m 690 (1064)
T KOG1144|consen 686 TQKTM 690 (1064)
T ss_pred HHHHH
Confidence 65544
No 262
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.56 E-value=1.2e-13 Score=119.91 Aligned_cols=166 Identities=13% Similarity=0.070 Sum_probs=101.1
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCC---CCcccC----ccceeeEEE-----------EEeeCC-----------
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAF---NTTFIS----TIGIDFKIK-----------TVDLKG----------- 55 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~---~~~~~~----~~~~~~~~~-----------~~~~~~----------- 55 (253)
..+..++|.++|+-..|||||+.+|.+... .++... ..|+.+... ....+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 346789999999999999999999985322 111111 112211100 000110
Q ss_pred -----eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccccc
Q psy9621 56 -----KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129 (253)
Q Consensus 56 -----~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 129 (253)
-...+.++|+||++.|.......+..+|++++|+|++... .-+. .+.+..+.. . .-.|++++.||+|+...
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~i~~~-l-gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLAAVEI-M-KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHHHHHH-c-CCCcEEEEEecccccCH
Confidence 0236899999999988766666778999999999998641 1111 122222211 1 22468899999998621
Q ss_pred cccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH---hCCceEEeeccC
Q psy9621 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE---YGVRFMETSAKA 206 (253)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~ 206 (253)
. ...+ ..++.+++.+. ...+++++||++
T Consensus 187 ~-----------------------------~~~~--------------------~~~ei~~~l~~~~~~~~~iipVSA~~ 217 (460)
T PTZ00327 187 A-----------------------------QAQD--------------------QYEEIRNFVKGTIADNAPIIPISAQL 217 (460)
T ss_pred H-----------------------------HHHH--------------------HHHHHHHHHHhhccCCCeEEEeeCCC
Confidence 0 0000 01112222221 257999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy9621 207 NINIEKAFIELATAIY 222 (253)
Q Consensus 207 ~~gi~~l~~~l~~~~~ 222 (253)
|.|++.|++.|...+.
T Consensus 218 G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 218 KYNIDVVLEYICTQIP 233 (460)
T ss_pred CCCHHHHHHHHHhhCC
Confidence 9999999999987554
No 263
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.54 E-value=2.4e-13 Score=106.03 Aligned_cols=166 Identities=12% Similarity=0.162 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeE--EEEEeeCCeEEEEEEEeCCCcccccc--------c---ch
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFK--IKTVDLKGKKIKLQIWDTAGQERFHT--------I---TT 76 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~---~~ 76 (253)
++|+++|.+|+|||||+|.+++...........+.+.. .....+. ...+.++||||...... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 58999999999999999999987654332111122222 1222233 35699999999754321 1 11
Q ss_pred hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 77 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
...+++|++|+|+++.+ .+-. ....++.+.+.++ .-.+++++.|+.|.....+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~----------------------- 133 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGT----------------------- 133 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCc-----------------------
Confidence 22467899999999886 2222 2233444444332 1257888888888652211
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEee-----ccCCCCHHHHHHHHHHHHHhc
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETS-----AKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-----a~~~~gi~~l~~~l~~~~~~~ 224 (253)
+++. .. -.....+.+.+..+-.++..+ +..+.++++|++.+-+++.++
T Consensus 134 ---~~~~---~~----------------~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 134 ---LEDY---LE----------------NSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred ---HHHH---HH----------------hccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 1111 00 112344555555554443333 456778999999999888773
No 264
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.54 E-value=1.3e-13 Score=98.37 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=66.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc---------cchhhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT---------ITTSYYR 80 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------~~~~~~~ 80 (253)
+|+|+|.+|+|||||+++|.+..... ...+..........+.+++. .+.++||||...-.. .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 69999999999999999999754322 11111111122233344443 467999999743211 1222347
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeee
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK 123 (253)
.+|++++|+|.+++.. +.....++++. .+.|+++|.||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999877422 22333444442 57999999998
No 265
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.54 E-value=2e-13 Score=110.76 Aligned_cols=157 Identities=14% Similarity=0.172 Sum_probs=103.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC------CeEEEEEEEeCCCccc----ccccchhhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK------GKKIKLQIWDTAGQER----FHTITTSYYR 80 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~Dt~G~~~----~~~~~~~~~~ 80 (253)
-|.+||.|++|||||+++++..+.... +|...++..+ ...-.+.+=|.||..+ -..+-..|++
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIa-------dYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLr 233 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIA-------DYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLR 233 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCccc-------CCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHH
Confidence 367999999999999999997654321 2222222111 2334588999999643 3445555554
Q ss_pred ---CccEEEEEEeCCChh---hHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621 81 ---GAMGIMLVYDITNEK---SFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI 152 (253)
Q Consensus 81 ---~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (253)
.+.+++.|+|++..+ ..++......++..+.. .+.|.+||+||+|+.
T Consensus 234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~------------------------- 288 (369)
T COG0536 234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP------------------------- 288 (369)
T ss_pred HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC-------------------------
Confidence 688999999998654 35555566666655542 689999999999976
Q ss_pred cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceE-EeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFM-ETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
...+ ......+.+.+..+...+ .+||.+++|++.|...+.+.+....
T Consensus 289 ---------------------~~~e-----~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 289 ---------------------LDEE-----ELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ---------------------cCHH-----HHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 1221 122223334444443322 2999999999999999999887764
No 266
>KOG1532|consensus
Probab=99.53 E-value=1.3e-14 Score=114.13 Aligned_cols=141 Identities=14% Similarity=0.193 Sum_probs=77.7
Q ss_pred EEEEEEeCCCcccc--cc----cchh--hhcCccEEEEEEeCC---ChhhHHH-HHHHHHHHHHhcccccceeEEeeeec
Q psy9621 58 IKLQIWDTAGQERF--HT----ITTS--YYRGAMGIMLVYDIT---NEKSFDN-ILKWLRNIDEHANEDVEKMILGKTKD 125 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~--~~----~~~~--~~~~~d~~ilv~d~~---~~~s~~~-~~~~~~~i~~~~~~~~p~iiv~nK~D 125 (253)
.+..++||||+.+- +. .... .....-+++.++|.. ++.+|-. +.+.-..+. ...+|+|++.||.|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH---hccCCeEEEEeccc
Confidence 46889999999652 11 1111 123345566676643 2333322 222222222 35799999999999
Q ss_pred cccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCC---CchhhhhhccchhHHHHHHHh-CCceEE
Q psy9621 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE---DPQVVNSWVCKHRGEAIAREY-GVRFME 201 (253)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 201 (253)
+.+..- ..+|...+...-.. ........+......-+-+-+ ++..+-
T Consensus 193 v~d~~f-----------------------------a~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~ 243 (366)
T KOG1532|consen 193 VSDSEF-----------------------------ALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVG 243 (366)
T ss_pred ccccHH-----------------------------HHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEE
Confidence 974322 23454433322211 111111112222222222222 377899
Q ss_pred eeccCCCCHHHHHHHHHHHHHhccCCCCC
Q psy9621 202 TSAKANINIEKAFIELATAIYDKTSGRDP 230 (253)
Q Consensus 202 ~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~ 230 (253)
||+.+|.|.+++|..+-..+.+......|
T Consensus 244 VSs~tG~G~ddf~~av~~~vdEy~~~ykp 272 (366)
T KOG1532|consen 244 VSSVTGEGFDDFFTAVDESVDEYEEEYKP 272 (366)
T ss_pred EecccCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999998888777665544
No 267
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.52 E-value=4.5e-13 Score=107.95 Aligned_cols=206 Identities=18% Similarity=0.145 Sum_probs=117.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc-------cchhhh
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT-------ITTSYY 79 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~ 79 (253)
.-...++++|.|++|||||++++.+.......-+.. +..+..-.+..+..++++.|+||.-+-.. ..-...
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FT--Tl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFT--TLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCce--ecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 445689999999999999999999854433211100 11111112334567899999998543211 123457
Q ss_pred cCccEEEEEEeCCChhh-HHHHHHHHHHHHHhcccccceeEEeeeecccccc-------------cccccccccccccee
Q psy9621 80 RGAMGIMLVYDITNEKS-FDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE-------------RFHTITTSYYRGAMG 145 (253)
Q Consensus 80 ~~~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~-------------~~~~~~~~~~~~~~~ 145 (253)
++||++|+|+|+..... .+.+.+.+...--...+..|-+.+ .|.+..+-+ ....+...|....+.
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I-~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~ 217 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTI-KKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD 217 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEE-EEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence 89999999999997665 445544444432222233443333 333332222 122222335556666
Q ss_pred eEEEEeccCccchhhHHH---HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 146 IMLVYDITNEKSFDNILK---WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
+++.-+++.++-.+.+.. |...+..... -+. ...++...+.+.. ..+.+||..+.|+++|.+.|.+.+-
T Consensus 218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NK-iD~-----~~~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 218 VLIREDVTLDDLIDALEGNRVYKPALYVVNK-IDL-----PGLEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EEEecCCcHHHHHHHHhhcceeeeeEEEEec-ccc-----cCHHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 677777665544444322 2122211111 111 2333444444444 7899999999999999999999874
Q ss_pred h
Q psy9621 223 D 223 (253)
Q Consensus 223 ~ 223 (253)
-
T Consensus 290 l 290 (365)
T COG1163 290 L 290 (365)
T ss_pred e
Confidence 4
No 268
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.7e-13 Score=113.90 Aligned_cols=186 Identities=19% Similarity=0.223 Sum_probs=114.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCC--CCC----------------------c-----ccCccceeeEEEEEeeCCeEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDA--FNT----------------------T-----FISTIGIDFKIKTVDLKGKKI 58 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~--~~~----------------------~-----~~~~~~~~~~~~~~~~~~~~~ 58 (253)
+.++++|+|+..+|||||+-+|+... ++. . ..+--|++.......+.....
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 57899999999999999999987422 110 0 001124555555555565667
Q ss_pred EEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhh---HH--HHHHHHHHHHHhcccccceeEEeeeeccccccccc
Q psy9621 59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS---FD--NILKWLRNIDEHANEDVEKMILGKTKDTAGQERFH 133 (253)
Q Consensus 59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~ 133 (253)
.+.|+|+||+..|..-.-.-..++|++|||+|+.+.+. |. ...+....+.+.. .--.++++.||+|+..
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~----- 159 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVS----- 159 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEcccccc-----
Confidence 89999999988876555556789999999999987641 11 1111111121211 2346778899999871
Q ss_pred cccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-----CceEEeeccCCC
Q psy9621 134 TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-----VRFMETSAKANI 208 (253)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~ 208 (253)
=+++.|+++ . .+...+.+..| ++|+++|+..|.
T Consensus 160 -------------------wde~rf~ei----------------------~-~~v~~l~k~~G~~~~~v~FIPiSg~~G~ 197 (428)
T COG5256 160 -------------------WDEERFEEI----------------------V-SEVSKLLKMVGYNPKDVPFIPISGFKGD 197 (428)
T ss_pred -------------------cCHHHHHHH----------------------H-HHHHHHHHHcCCCccCCeEEecccccCC
Confidence 011112221 1 12223444444 679999999999
Q ss_pred CHHHHH--------HHHHHHHHhccCCCCCCCCCCeEeecC
Q psy9621 209 NIEKAF--------IELATAIYDKTSGRDPLEAPDRVTIDK 241 (253)
Q Consensus 209 gi~~l~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (253)
|+.+-- ..|..++-.-....++.+.|-++.|+.
T Consensus 198 Nl~~~s~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~ 238 (428)
T COG5256 198 NLTKKSENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQD 238 (428)
T ss_pred cccccCcCCcCccCChHHHHHhccCCCCCCCCCCeEeEeee
Confidence 976532 135555555555555666676766653
No 269
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.51 E-value=5.5e-13 Score=115.48 Aligned_cols=204 Identities=16% Similarity=0.268 Sum_probs=126.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC--CeEEEEEEEeCCCcccccccchhhhcCc---
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK--GKKIKLQIWDTAGQERFHTITTSYYRGA--- 82 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~--- 82 (253)
..-.|+|+|..++|||||+.+|.+. +.+.++.+.+|....+.-. +...++.+|-..|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 3458999999999999999998753 3456777888877665332 2345789999998777777777666542
Q ss_pred -cEEEEEEeCCChhh-HHHHHHHHHHHHHhcccccceeEEeeeecccccccc----------------------------
Q psy9621 83 -MGIMLVYDITNEKS-FDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERF---------------------------- 132 (253)
Q Consensus 83 -d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~---------------------------- 132 (253)
-.+|||.|++.|.. ++.+.+|+..++.+... +.+ -..+.+...++-.
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~-L~~--~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~ 177 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEK-LKS--DPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS 177 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHH-hhc--cHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence 36788999999976 55677888777666521 000 0000000000000
Q ss_pred --c-cc---cccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccC
Q psy9621 133 --H-TI---TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKA 206 (253)
Q Consensus 133 --~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 206 (253)
+ .. .+-......|+.+..-++..+.+..+..-.+.-. +... +.....+.+|.++|..+|.||++.
T Consensus 178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~----e~~D-----fIqq~LR~~cL~yGAsL~yts~~~ 248 (472)
T PF05783_consen 178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKE----EHFD-----FIQQYLRTFCLKYGASLIYTSVKE 248 (472)
T ss_pred ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccch----hhHH-----HHHHHHHHHHHhcCCeEEEeeccc
Confidence 0 00 0001112223444444455444444322111001 1111 455678999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccC
Q psy9621 207 NINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 207 ~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+++.|+..|...+.....
T Consensus 249 ~~n~~~L~~yi~h~l~~~~f 268 (472)
T PF05783_consen 249 EKNLDLLYKYILHRLYGFPF 268 (472)
T ss_pred cccHHHHHHHHHHHhccCCC
Confidence 99999999998888776444
No 270
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.50 E-value=2.9e-14 Score=102.70 Aligned_cols=89 Identities=25% Similarity=0.315 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCccc-CccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFI-STIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
+||+++|+.|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777765544 4443 222333456788999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
|+.+++.+++.+ |...+....+.++|.++++||.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~ 90 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLE 90 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhH
Confidence 999999998776 8777766666789999999999974
No 271
>KOG1191|consensus
Probab=99.49 E-value=2.1e-13 Score=115.26 Aligned_cols=169 Identities=16% Similarity=0.126 Sum_probs=106.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc---------cccchh
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF---------HTITTS 77 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~ 77 (253)
+..++|+++|.||||||||+|.|.+...... .|.-|.+.......++...+.+.+.||+|-.+- ....+.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIV-Spv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIV-SPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEe-CCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 4568999999999999999999997655433 344455555455555555577999999996541 111234
Q ss_pred hhcCccEEEEEEeCC--ChhhHHHHHHHHHHHHHhcc------cccceeEEeeeeccccccccccccccccccceeeEEE
Q psy9621 78 YYRGAMGIMLVYDIT--NEKSFDNILKWLRNIDEHAN------EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV 149 (253)
Q Consensus 78 ~~~~~d~~ilv~d~~--~~~s~~~~~~~~~~i~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (253)
.+..+|++++|+|+. +-++-..+...++....... ..-|++++.||+|+...
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~-------------------- 404 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK-------------------- 404 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc--------------------
Confidence 567899999999983 22222222344444322221 33789999999999721
Q ss_pred EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHH-HHhC-C-ceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIA-REYG-V-RFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
.++ .......... .-++ . .+.++|+++++|++.|.+.+...+...-.
T Consensus 405 -------------------------~~~-----~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 405 -------------------------IPE-----MTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred -------------------------ccc-----ccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 011 1110000011 1122 3 34569999999999999999998877443
No 272
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.48 E-value=1.7e-12 Score=110.97 Aligned_cols=83 Identities=17% Similarity=0.291 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCC-cc-----cCccceeeEEEEE---------------eeC-CeEEEEEEEeCCC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNT-TF-----ISTIGIDFKIKTV---------------DLK-GKKIKLQIWDTAG 67 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~-~~-----~~~~~~~~~~~~~---------------~~~-~~~~~~~l~Dt~G 67 (253)
++|+++|.||||||||+++|.+..+.. .| .|+.|+.+....+ ..+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999876543 22 2334432211100 011 1236789999999
Q ss_pred c----ccccccchhh---hcCccEEEEEEeCC
Q psy9621 68 Q----ERFHTITTSY---YRGAMGIMLVYDIT 92 (253)
Q Consensus 68 ~----~~~~~~~~~~---~~~~d~~ilv~d~~ 92 (253)
. +...++...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5 3445555566 88999999999997
No 273
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.46 E-value=1.5e-12 Score=121.78 Aligned_cols=100 Identities=19% Similarity=0.122 Sum_probs=66.6
Q ss_pred cHHHHHHHhhcCCCCCcccC----ccceeeEEEEE------------eeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 21 GKTCVLFRFSDDAFNTTFIS----TIGIDFKIKTV------------DLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 21 GKStL~~~l~~~~~~~~~~~----~~~~~~~~~~~------------~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
+||||+.++.+......-.. -+|..+.+... ........+.+|||||++.|..++...+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 39999999998766543222 22322111100 000111248999999999998888888889999
Q ss_pred EEEEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 85 IMLVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 85 ~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
+++|+|+++ +.+++.+.. +.. .++|+++++||+|+.
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~~----lk~---~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAINI----LRQ---YKTPFVVAANKIDLI 591 (1049)
T ss_pred EEEEEECcccCCHhHHHHHHH----HHH---cCCCEEEEEECCCCc
Confidence 999999986 444444332 221 368999999999985
No 274
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.45 E-value=3.1e-13 Score=124.25 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=83.3
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcC---------------CCCCc---ccCccceeeEEEEEeeCCeEEEEEEEeCCC
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDD---------------AFNTT---FISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 67 (253)
.+...||+++|+.++|||||+++|+.. .+... .-.|+........+.+.+....+.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 456789999999999999999999742 11111 111222222222334566778899999999
Q ss_pred cccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccc
Q psy9621 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129 (253)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 129 (253)
+..|......+++.+|++|+|+|+......+....|.. . ...++|.++++||+|....
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~---~~~~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-A---LKENVKPVLFINKVDRLIN 153 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-H---HHcCCCEEEEEEChhcccc
Confidence 99998888889999999999999887433222222221 1 1246788999999998754
No 275
>PRK13768 GTPase; Provisional
Probab=99.44 E-value=7.7e-13 Score=106.99 Aligned_cols=136 Identities=15% Similarity=0.189 Sum_probs=75.9
Q ss_pred EEEEEeCCCcccc---cccchhhhcC-----ccEEEEEEeCCChhhHHHHH--HHHHHHHHhcccccceeEEeeeecccc
Q psy9621 59 KLQIWDTAGQERF---HTITTSYYRG-----AMGIMLVYDITNEKSFDNIL--KWLRNIDEHANEDVEKMILGKTKDTAG 128 (253)
Q Consensus 59 ~~~l~Dt~G~~~~---~~~~~~~~~~-----~d~~ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~iiv~nK~D~~~ 128 (253)
.+.+||+||+.+. ......+++. .+++++++|+....+..... .|+... .....++|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~-~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALS-VQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHH-HHHHcCCCEEEEEEhHhhcC
Confidence 6899999998663 3333333332 88999999996543322221 222221 11125799999999999873
Q ss_pred ccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHH---HHHhC--CceEEee
Q psy9621 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAI---AREYG--VRFMETS 203 (253)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~S 203 (253)
. ...+....++.........-..... ......+++ .+..+ .+++++|
T Consensus 177 ~--------------------------~~~~~~~~~l~~~~~~~~~l~~~~~--~~~~~~~~~~~~i~~~~~~~~vi~iS 228 (253)
T PRK13768 177 E--------------------------EELERILKWLEDPEYLLEELKLEKG--LQGLLSLELLRALEETGLPVRVIPVS 228 (253)
T ss_pred c--------------------------hhHHHHHHHHhCHHHHHHHHhcccc--hHHHHHHHHHHHHHHHCCCCcEEEEE
Confidence 2 2222233332210000000000000 001222223 23344 5899999
Q ss_pred ccCCCCHHHHHHHHHHHHHh
Q psy9621 204 AKANINIEKAFIELATAIYD 223 (253)
Q Consensus 204 a~~~~gi~~l~~~l~~~~~~ 223 (253)
++++.|+++++++|.+.+..
T Consensus 229 a~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 229 AKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred CCCCcCHHHHHHHHHHHcCC
Confidence 99999999999999887754
No 276
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=3.4e-12 Score=103.25 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=104.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCc--ccCccceeeEEEEEeeCCeEEEEEEEeCCCccc--ccccc------hh
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTT--FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER--FHTIT------TS 77 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~------~~ 77 (253)
....|+|.|.||||||||+++++..+.... +-.|-++... .+..+...++++||||.-+ ...+. -.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG----hfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG----HFERGYLRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe----eeecCCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 356899999999999999999998765433 2223232222 1223345799999999521 11111 11
Q ss_pred hh-cCccEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 78 YY-RGAMGIMLVYDITNE--KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 78 ~~-~~~d~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
++ .-.++++|+||.+.. -+.+....+++++...+ +.|+++|.||+|+...
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~------------------------- 295 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADE------------------------- 295 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccch-------------------------
Confidence 22 346788889998864 45777778999998887 3899999999998621
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHH-HHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA-IAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
. ..++... +....+.....+++..+.+++.+-..+.....+.
T Consensus 296 ---------------------e-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 296 ---------------------E-------KLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ---------------------h-------HHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhch
Confidence 1 1111222 2223334578889999999998888887775543
No 277
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.43 E-value=3.2e-13 Score=107.87 Aligned_cols=129 Identities=21% Similarity=0.274 Sum_probs=68.0
Q ss_pred EEEEEeCCCcccccccchhhh--------cCccEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 59 KLQIWDTAGQERFHTITTSYY--------RGAMGIMLVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 59 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.+.++|||||.++...+.... ...-++++++|... +..|-. .++..+.-....+.|++.|.||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 689999999987644443322 34457788888654 333333 33333333333579999999999997
Q ss_pred cccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---C-C-ceEEe
Q psy9621 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---G-V-RFMET 202 (253)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~ 202 (253)
.+ ..+...+|..+.......... ......+++++-. + + .++.+
T Consensus 170 ~~---------------------------~~~~~l~~~~d~~~l~~~~~~-----~~~~l~~~i~~~l~~~~~~~~f~pl 217 (238)
T PF03029_consen 170 SK---------------------------YLEFILEWFEDPDSLEDLLES-----DYKKLNEEIAELLDDFGLVIRFIPL 217 (238)
T ss_dssp -H---------------------------HHHHHHHHHHSHHHHHHHHHT------HHHHHHHHHHHCCCCSSS---EE-
T ss_pred cc---------------------------hhHHHHHHhcChHHHHHHHHH-----HHHHHHHHHHHHHhhcCCCceEEEE
Confidence 32 134455555543333211100 0122233333333 3 4 89999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q psy9621 203 SAKANINIEKAFIELATAI 221 (253)
Q Consensus 203 Sa~~~~gi~~l~~~l~~~~ 221 (253)
|+.+++|+++++..+-+.+
T Consensus 218 s~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 218 SSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp BTTTTTTHHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 278
>PRK09866 hypothetical protein; Provisional
Probab=99.40 E-value=1.2e-11 Score=108.98 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=45.5
Q ss_pred EEEEEEeCCCcccc-----cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 58 IKLQIWDTAGQERF-----HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~-----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.++.++||||-..- .......+..+|++++|+|.+...+... ......+.+. +...|+++|+||+|+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQ 302 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCC
Confidence 35789999997542 1123447899999999999987543333 2233333332 2236999999999985
No 279
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.2e-11 Score=111.81 Aligned_cols=218 Identities=13% Similarity=0.065 Sum_probs=133.8
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcC--CCCC--ccc------------CccceeeEEEEEeeCCe-EEEEEEEeCCCc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDD--AFNT--TFI------------STIGIDFKIKTVDLKGK-KIKLQIWDTAGQ 68 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~--~~~------------~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~ 68 (253)
.+...||.++|+-++|||||..+++.. .... ..+ ..-|++..........+ ...++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 667899999999999999999998731 1110 000 11244444444444444 588999999999
Q ss_pred ccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccccccccc-ceeeE
Q psy9621 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRG-AMGIM 147 (253)
Q Consensus 69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~ 147 (253)
-+|.......++-+|++++|+|+...-..+.-.-|.+.. ..++|.+++.||+|..+.+-.....+...+. .....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~ 162 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVP 162 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccccChhhhHHHHHHHhCCCcee
Confidence 999999999999999999999998876555555564443 3579999999999999886544433321110 00111
Q ss_pred ----------------------EEEe-cc-------CccchhhHHHHHHhhhhhcCCCchhhhhh------ccchhHHHH
Q psy9621 148 ----------------------LVYD-IT-------NEKSFDNILKWLRNIDEHANEDPQVVNSW------VCKHRGEAI 191 (253)
Q Consensus 148 ----------------------~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 191 (253)
..|+ .+ ..+......+|...+.+...+..+..... ...++....
T Consensus 163 v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~ 242 (697)
T COG0480 163 VQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKA 242 (697)
T ss_pred eeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHH
Confidence 1111 00 01112222344444444333322211111 111111111
Q ss_pred HHH----h-CCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621 192 ARE----Y-GVRFMETSAKANINIEKAFIELATAIYDKTSG 227 (253)
Q Consensus 192 ~~~----~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 227 (253)
.+. . -+|.+.-||..+.|+..+++.+++.+..-...
T Consensus 243 i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~ 283 (697)
T COG0480 243 LRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDV 283 (697)
T ss_pred HHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhc
Confidence 111 1 26889999999999999999999999875433
No 280
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=5.9e-12 Score=105.18 Aligned_cols=127 Identities=15% Similarity=0.165 Sum_probs=92.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc--CCCC----------C--------cccCccceeeEEEEEeeCCeEEEEEEEeCC
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD--DAFN----------T--------TFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~--~~~~----------~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 66 (253)
.....-++|-+|.+|||||..+++. +... . .....-|++.....++++.....+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3456789999999999999999862 1110 0 011233778888888888888999999999
Q ss_pred CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccc
Q psy9621 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITT 137 (253)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 137 (253)
||+.|..-.-.-+..+|.+++|+|+... .+.-..-+-++.+. .++||+-+.||.|..+..-.|.+.+
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl--R~iPI~TFiNKlDR~~rdP~ELLdE 156 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL--RDIPIFTFINKLDREGRDPLELLDE 156 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh--cCCceEEEeeccccccCChHHHHHH
Confidence 9999987777778899999999998654 23322222233333 5999999999999987765444443
No 281
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.36 E-value=4.4e-12 Score=102.03 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=77.1
Q ss_pred ccccccchhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeE
Q psy9621 69 ERFHTITTSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM 147 (253)
Q Consensus 69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (253)
+++..+.+.+++++|.+++|||++++. ++..+.+|+..+.. .++|+++|+||+|+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~-------------------- 80 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLL-------------------- 80 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccC--------------------
Confidence 567888888999999999999999887 89999999987653 579999999999996
Q ss_pred EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621 148 LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
.... ...+....+ +.++++++++||++|.|++++|+.+..
T Consensus 81 --------------------------~~~~-----~~~~~~~~~-~~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 81 --------------------------DDED-----MEKEQLDIY-RNIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred --------------------------CCHH-----HHHHHHHHH-HHCCCeEEEEecCCchhHHHHHhhhcC
Confidence 2222 222333334 357899999999999999999988763
No 282
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.35 E-value=2e-11 Score=98.20 Aligned_cols=121 Identities=17% Similarity=0.257 Sum_probs=72.4
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcc-cCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc---c------
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTF-ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT---I------ 74 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~------ 74 (253)
..+..++|+|+|.+|||||||+|.+++....... .+.............. ...+.+|||||..+... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~--g~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD--GFKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCcCcchhhHHHHHHHHH
Confidence 4567899999999999999999999986643321 1111111221222223 35689999999765421 1
Q ss_pred -chhhhc--CccEEEEEEeCCChh-hHHHHHHHHHHHHHhccc--ccceeEEeeeecccc
Q psy9621 75 -TTSYYR--GAMGIMLVYDITNEK-SFDNILKWLRNIDEHANE--DVEKMILGKTKDTAG 128 (253)
Q Consensus 75 -~~~~~~--~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~D~~~ 128 (253)
...++. ..+++++|..++... +... ...++.+...++. -.++++|.||.|...
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 122332 577888887666432 2221 2344444433322 257999999999863
No 283
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.34 E-value=2.2e-11 Score=101.67 Aligned_cols=141 Identities=16% Similarity=0.226 Sum_probs=91.4
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcc-cccceeEEeeeec
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNE----------KSFDNILKWLRNIDEHAN-EDVEKMILGKTKD 125 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D 125 (253)
...+.+||++|+...+..|..++.+++++|+|+|+++. ..+......+..+..... .+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 56789999999999999999999999999999999874 334444455555544322 6799999999999
Q ss_pred ccccccccc-ccccccccceeeEEEEeccC-ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH--HhCCceEE
Q psy9621 126 TAGQERFHT-ITTSYYRGAMGIMLVYDITN-EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR--EYGVRFME 201 (253)
Q Consensus 126 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 201 (253)
+..+..... +...+. +-.. ...++....|... ....+.. ...+-...
T Consensus 240 ~f~~ki~~~~l~~~fp----------~y~g~~~~~~~~~~~i~~-------------------~F~~~~~~~~~~~~~~~ 290 (317)
T cd00066 240 LFEEKIKKSPLTDYFP----------DYTGPPNDYEEAAKFIRK-------------------KFLDLNRNPNKEIYPHF 290 (317)
T ss_pred HHHHhhcCCCccccCC----------CCCCCCCCHHHHHHHHHH-------------------HHHHhhcCCCCeEEEEe
Confidence 875543211 100000 0000 1233333333321 1111111 12355577
Q ss_pred eeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 202 TSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 202 ~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
++|.+-.+++.+|+.+...+..+..
T Consensus 291 t~a~Dt~~i~~vf~~v~~~i~~~~l 315 (317)
T cd00066 291 TCATDTENIRFVFDAVKDIILQNNL 315 (317)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998887653
No 284
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.34 E-value=2.7e-11 Score=95.55 Aligned_cols=168 Identities=14% Similarity=0.202 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccce--eeEEEEEeeCCeEEEEEEEeCCCccccccc-----------ch
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGI--DFKIKTVDLKGKKIKLQIWDTAGQERFHTI-----------TT 76 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~~ 76 (253)
++|+|+|.+|+||||++|.+++............. ........+.+ ..+.++||||..+-... ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999987765443221111 22222334444 55899999995322111 11
Q ss_pred hhhcCccEEEEEEeCCChhhHHH--HHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 77 SYYRGAMGIMLVYDITNEKSFDN--ILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
...++.+++++|+.++ +-+-.. +..++..++... --.-++|+.+..|......
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~----------------------- 133 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDS----------------------- 133 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTT-----------------------
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHH-HHhHhhHHhhhcccccccc-----------------------
Confidence 2346799999999988 333222 223333333321 1235777778877652211
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeecc------CCCCHHHHHHHHHHHHHhcc
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAK------ANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~------~~~gi~~l~~~l~~~~~~~~ 225 (253)
+++..+ .......+++.+..+-.++..+.+ ....+.+|+..+-.++.++.
T Consensus 134 ---~~~~l~------------------~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 134 ---LEDYLK------------------KESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp ---HHHHHH------------------HHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHh------------------ccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 111100 001123556666667666666665 23457788888877777654
No 285
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.33 E-value=4.9e-12 Score=118.06 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=82.3
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCC--C---------cccC---ccceeeEEE--EEee--------------C
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFN--T---------TFIS---TIGIDFKIK--TVDL--------------K 54 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~--~---------~~~~---~~~~~~~~~--~~~~--------------~ 54 (253)
..+...||+|+|+.++|||||+.+|+...-. . ++.+ .-|+++... .+.+ .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 4567889999999999999999999743210 0 0000 012222211 1211 1
Q ss_pred CeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 55 GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.....+.++||||+.+|.......++.+|++|+|+|+...-.......|.+. . ..++|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~-~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-L---GERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHH-H---HCCCCEEEEEECCccc
Confidence 2356789999999999988888889999999999999876544443334332 2 2578999999999998
No 286
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.33 E-value=1.9e-11 Score=95.22 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=24.4
Q ss_pred hCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 195 YGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 195 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.+.++++|||++|+|++++|++|.+...
T Consensus 169 ~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 169 GEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3489999999999999999999986543
No 287
>KOG1707|consensus
Probab=99.31 E-value=7.9e-11 Score=101.66 Aligned_cols=166 Identities=19% Similarity=0.283 Sum_probs=123.2
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
.....-+.+.|+|+.++|||.|++.++++.+......+....+....+.+.+....+.+-|.+-. ....+...- ..||
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 34566789999999999999999999998888776666666677777777777778888888754 333333222 7899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++.++||.+++.+|..+...++.-... ..+|.++|+.|+|+..
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe----------------------------------- 540 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDE----------------------------------- 540 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccch-----------------------------------
Confidence 999999999999999988766554333 6899999999999973
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. ...+. .+++.++++ +-+..|.++.-. .++|..|..+...-.
T Consensus 541 -----------~~Q~----~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 541 -----------VPQR----YSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred -----------hhhc----cCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC
Confidence 2221 12222 889999996 445566664223 889999888776644
No 288
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.31 E-value=2.6e-11 Score=99.17 Aligned_cols=120 Identities=14% Similarity=0.121 Sum_probs=71.6
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc-------hh
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT-------TS 77 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~ 77 (253)
....++|+++|.+|+||||++|++++...... ...+.+.......... ....+.+|||||..+..... ..
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 45688999999999999999999998664321 1112122221222222 34679999999976542221 11
Q ss_pred hh--cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccc
Q psy9621 78 YY--RGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTA 127 (253)
Q Consensus 78 ~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~ 127 (253)
++ .+.|++++|.+++....-..-...++.+...++ --.+.+++.++.|..
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 22 268999999766532111121233444444332 235789999999965
No 289
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.30 E-value=3.9e-11 Score=97.84 Aligned_cols=155 Identities=20% Similarity=0.146 Sum_probs=100.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCC----------c---------------------ccCccceeeEEEEEeeCC
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT----------T---------------------FISTIGIDFKIKTVDLKG 55 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~----------~---------------------~~~~~~~~~~~~~~~~~~ 55 (253)
...+|.+..|+..=|||||+-||+...-.. . .....|++...-...+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 457899999999999999999997422100 0 001113333333333444
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccc
Q psy9621 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTI 135 (253)
Q Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 135 (253)
...+|.+-|||||++|..-.---..-||++|+++|+ +..+....+-...|.... .=..++++.||+||.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLL-GIrhvvvAVNKmDLv-------- 152 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLL-GIRHVVVAVNKMDLV-------- 152 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHh-CCcEEEEEEeeeccc--------
Confidence 556799999999999965444445679999999998 444444333333333332 234678889999997
Q ss_pred cccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC---CceEEeeccCCCCHH
Q psy9621 136 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG---VRFMETSAKANINIE 211 (253)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~ 211 (253)
...+.... -...+...|+++++ ..+++.||..|+||-
T Consensus 153 --------------------------------------dy~e~~F~-~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 153 --------------------------------------DYSEEVFE-AIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred --------------------------------------ccCHHHHH-HHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 22221111 23345678888887 588999999999974
No 290
>PTZ00416 elongation factor 2; Provisional
Probab=99.29 E-value=1.1e-11 Score=115.58 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=80.2
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCC--CC---------cccC---ccceeeE--EEEEeeC--------CeEEEEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAF--NT---------TFIS---TIGIDFK--IKTVDLK--------GKKIKLQ 61 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~--~~---------~~~~---~~~~~~~--~~~~~~~--------~~~~~~~ 61 (253)
.+...||+++|+.++|||||+++|+...- .. ++.+ .-|++.. ...+.+. ++...+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 46678999999999999999999985211 00 0000 0112221 1122222 2256799
Q ss_pred EEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 62 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
++||||+.+|.......++.+|++|+|+|++..-.......| ..+.. .++|++++.||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence 999999999988788889999999999999876443333333 22222 468999999999998
No 291
>KOG1490|consensus
Probab=99.27 E-value=1.8e-11 Score=103.87 Aligned_cols=165 Identities=16% Similarity=0.129 Sum_probs=108.0
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEee---CCeEEEEEEEeCCCcccc----cccch--
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDL---KGKKIKLQIWDTAGQERF----HTITT-- 76 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~----~~~~~-- 76 (253)
......++|+|-|+||||||++.+........+-+ ++++.+-+ ..+-..++++||||.-.. .+...
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYa-----FTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmq 239 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYA-----FTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQ 239 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcc-----cccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHH
Confidence 34567899999999999999999886554322111 11111111 223356899999996321 11111
Q ss_pred ---hhhcCccEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEe
Q psy9621 77 ---SYYRGAMGIMLVYDITNE--KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYD 151 (253)
Q Consensus 77 ---~~~~~~d~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (253)
....--.+++++.|++.. -|.+....+++.|...+ .+.|.|+|+||+|+-+.+..
T Consensus 240 sITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL------------------- 299 (620)
T KOG1490|consen 240 IITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDL------------------- 299 (620)
T ss_pred HHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCcccc-------------------
Confidence 122334567788898864 46777778999998888 78999999999998743221
Q ss_pred ccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 152 ITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
.+ -..+..+.+....+++++++|+.+.+||.++-......++..
T Consensus 300 ------------------------~~-----~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 300 ------------------------DQ-----KNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred ------------------------CH-----HHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHH
Confidence 00 112233444445569999999999999998777766655443
No 292
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.26 E-value=7.3e-11 Score=99.35 Aligned_cols=140 Identities=11% Similarity=0.157 Sum_probs=90.7
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCCh----------hhHHHHHHHHHHHHHhc-ccccceeEEeeeec
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNE----------KSFDNILKWLRNIDEHA-NEDVEKMILGKTKD 125 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D 125 (253)
...+.+||.+|+...+..|..++.+++++|||+|+++. ..+......++.+.... -.+.|+++++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 45689999999999999999999999999999999973 23555555555554432 26799999999999
Q ss_pred cccccccccc-cccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH---HhCCceEE
Q psy9621 126 TAGQERFHTI-TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR---EYGVRFME 201 (253)
Q Consensus 126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 201 (253)
+........- ...+.... ....++.+..++..--. .... ...+-...
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~----------g~~~~~~~~~yi~~~F~-------------------~~~~~~~~r~~y~h~ 313 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYK----------GPNDYEAAAKFIKQKFL-------------------RLNRNSSRKSIYHHF 313 (342)
T ss_pred hHHHHhCCCchhccCCCCC----------CCCCHHHHHHHHHHHHH-------------------HhccCCCCceEEEEE
Confidence 9855432211 11111100 01234444333332111 1111 12255578
Q ss_pred eeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 202 TSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 202 ~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
|+|.+-.++..+|+.+...+..+.
T Consensus 314 t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 314 TCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred eeecccHHHHHHHHHHHHHHHHHH
Confidence 889999999999999888887755
No 293
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.25 E-value=1.3e-10 Score=91.36 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=22.4
Q ss_pred CceEEeeccCCCCHHHHHHHHHHH
Q psy9621 197 VRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 197 ~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.+++++||++|.|++++++++.+.
T Consensus 182 ~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 182 AEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999999874
No 294
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.25 E-value=1.6e-11 Score=85.35 Aligned_cols=137 Identities=23% Similarity=0.207 Sum_probs=89.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc----cccccchhhhcCccEEE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE----RFHTITTSYYRGAMGIM 86 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~~d~~i 86 (253)
|++++|..|+|||||++.+.+... -+..|..++| +.+ -.+||||.- .+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 799999999999999999987432 2233333222 221 246999842 11111122345788999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
+|-.++++++--. ..+... ...|+|-+.+|.|++
T Consensus 70 ~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLa--------------------------------------- 103 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLA--------------------------------------- 103 (148)
T ss_pred eeecccCccccCC-----cccccc--cccceEEEEeccccc---------------------------------------
Confidence 9999998864111 111111 346799999999998
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHH
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
+. -.....+++..+.| -++|++|+.++.|++++++.|...
T Consensus 104 -------ed-------~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 104 -------ED-------ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred -------ch-------HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHhh
Confidence 21 22234556666666 589999999999999999988653
No 295
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.23 E-value=4.1e-11 Score=110.56 Aligned_cols=119 Identities=19% Similarity=0.154 Sum_probs=79.8
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCC--C---------cccC---ccceeeEE--EE--EeeCCeEEEEEEEeCCC
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFN--T---------TFIS---TIGIDFKI--KT--VDLKGKKIKLQIWDTAG 67 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~--~---------~~~~---~~~~~~~~--~~--~~~~~~~~~~~l~Dt~G 67 (253)
.+...||+++|+.++|||||+.+|+...-. . ++.+ .-+++... .. +...+....+.++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 456789999999999999999999742111 0 0000 00111111 11 22344567899999999
Q ss_pred cccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccc
Q psy9621 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128 (253)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 128 (253)
+.+|.......++.+|++|+|+|+.....-.....|.. ... .+.|.+++.||+|...
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~---~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALR---ERVKPVLFINKVDRLI 153 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHH---cCCCeEEEEECchhhc
Confidence 99998888889999999999999887543333233322 222 3568899999999863
No 296
>PTZ00258 GTP-binding protein; Provisional
Probab=99.22 E-value=4.7e-10 Score=95.18 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=54.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCe---------------EEEEEEEeCCCcccc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK---------------KIKLQIWDTAGQERF 71 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 71 (253)
...++|+++|.||||||||+|++.+........|....+...-.+.+.+. ..++.++||||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45679999999999999999999876543322222222222222322221 235899999996432
Q ss_pred ----cccchh---hhcCccEEEEEEeCC
Q psy9621 72 ----HTITTS---YYRGAMGIMLVYDIT 92 (253)
Q Consensus 72 ----~~~~~~---~~~~~d~~ilv~d~~ 92 (253)
..+... .++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 222223 457899999999973
No 297
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.22 E-value=2.4e-10 Score=96.37 Aligned_cols=118 Identities=15% Similarity=0.204 Sum_probs=85.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCC--CCC------------cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDA--FNT------------TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT 73 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 73 (253)
...||+++-+..=|||||+..|+... |.. ....--|++...+.-.+.++...++++|||||..|.+
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 46799999999999999999998532 211 1112235566555555666678899999999999999
Q ss_pred cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccc
Q psy9621 74 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129 (253)
Q Consensus 74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 129 (253)
.....+.=.|++++++|+...- +..-+-.+.. ....+.+.|+|.||+|...+
T Consensus 84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkK---Al~~gL~PIVVvNKiDrp~A 135 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKK---ALALGLKPIVVINKIDRPDA 135 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCC-CCchhhhHHH---HHHcCCCcEEEEeCCCCCCC
Confidence 9999999999999999987632 2222222222 22356888888999998754
No 298
>KOG0461|consensus
Probab=99.19 E-value=5.8e-10 Score=90.81 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=72.8
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcC----CCC---CcccCccceeeEEEEEee-------CCeEEEEEEEeCC
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDD----AFN---TTFISTIGIDFKIKTVDL-------KGKKIKLQIWDTA 66 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~----~~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~ 66 (253)
|+.-|. .+|+.++|+-.+|||||..++..- .|+ .+....+..|.....+.+ .+...++.++|+|
T Consensus 1 m~~~p~--n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCP 78 (522)
T KOG0461|consen 1 MTSPPS--NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCP 78 (522)
T ss_pred CCCCCc--eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCC
Confidence 444444 489999999999999999998631 122 122222233333333332 2445788999999
Q ss_pred CcccccccchhhhcCccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccc
Q psy9621 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
|+.......-....-.|..++|+|+.....-+..+ -.+-++. -...++|.||+|..
T Consensus 79 GHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~l 135 (522)
T KOG0461|consen 79 GHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVL 135 (522)
T ss_pred CcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccc
Confidence 98654433333344568899999998654333322 2222222 23567788999875
No 299
>KOG0458|consensus
Probab=99.16 E-value=4.1e-10 Score=97.33 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=81.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCC-----------------------------cccCccceeeEEEEEeeCCeEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNT-----------------------------TFISTIGIDFKIKTVDLKGKKI 58 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 58 (253)
..++++|+|+..+|||||+-+++..--.. .-.+--|+++...+..++-...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 57899999999999999999886411110 0112235666666666666677
Q ss_pred EEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHH------HHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI------LKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~------~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.+.|+|+||+..|..-.-.-...+|++|+|+|++..+ |+.- .+....+.+.. .--.++|+.||+|+.
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLV 328 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHc-CcceEEEEeeccccc
Confidence 8999999998888766666678899999999988532 3331 12233333333 345788889999987
No 300
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.3e-10 Score=92.28 Aligned_cols=171 Identities=14% Similarity=0.076 Sum_probs=106.6
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCC---CcccCccc--e-----------------eeEEEEEee-C----CeE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFN---TTFISTIG--I-----------------DFKIKTVDL-K----GKK 57 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~---~~~~~~~~--~-----------------~~~~~~~~~-~----~~~ 57 (253)
..+.++||.++|+-.=|||||..++.+-... +.....+. . .|....... . .-.
T Consensus 6 ~~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~ 85 (415)
T COG5257 6 HIQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELV 85 (415)
T ss_pred cCCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEE
Confidence 3478999999999999999999999752211 11011000 0 011000000 0 113
Q ss_pred EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccc
Q psy9621 58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITT 137 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 137 (253)
..+.+.|.|||+-.-...-.-..-.|++++|+.++.+-....-++-+..+.-. .-..++|+-||+|+...+.+
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~A----- 158 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERA----- 158 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHH-----
Confidence 46889999999865443333334569999999998764433333433433322 24578999999999732111
Q ss_pred cccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeeccCCCCHHHHH
Q psy9621 138 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKANINIEKAF 214 (253)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~ 214 (253)
. -..++..+|.+.- +.|++++||..+.|||.|+
T Consensus 159 ------------------------l--------------------E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~ 194 (415)
T COG5257 159 ------------------------L--------------------ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALI 194 (415)
T ss_pred ------------------------H--------------------HHHHHHHHHhcccccCCCceeeehhhhccCHHHHH
Confidence 1 1223344444433 4799999999999999999
Q ss_pred HHHHHHHHhccC
Q psy9621 215 IELATAIYDKTS 226 (253)
Q Consensus 215 ~~l~~~~~~~~~ 226 (253)
+.|.+.+..-..
T Consensus 195 e~i~~~IptP~r 206 (415)
T COG5257 195 EAIEKYIPTPER 206 (415)
T ss_pred HHHHHhCCCCcc
Confidence 999999877443
No 301
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.14 E-value=1.1e-09 Score=87.24 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=67.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
.....|+++|.+|+|||||++.+.............| . .++. .....++.++||||.. .. .....+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~---i~i~-~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P---ITVV-TGKKRRLTFIECPNDI--NA-MIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c---EEEE-ecCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence 4456799999999999999999886422111111112 1 1121 1245668999999853 22 223468899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhccccccee-EEeeeeccc
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKM-ILGKTKDTA 127 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~D~~ 127 (253)
+++|.+....... ...+..+.. .+.|.+ ++.||.|+.
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLF 146 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccC
Confidence 9999876543322 223333322 357754 599999986
No 302
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.14 E-value=1.5e-09 Score=90.55 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=68.0
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT 136 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 136 (253)
...+.++||+|..+-. ......+|.++++.+....+.+..+..- +. .+.-++|.||.|+.....
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~g---i~-----E~aDIiVVNKaDl~~~~~----- 211 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKKG---IM-----ELADLIVINKADGDNKTA----- 211 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHhh---hh-----hhhheEEeehhcccchhH-----
Confidence 3568999999975322 2256789999999775556555554321 11 223489999999862110
Q ss_pred ccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH-------HhCCceEEeeccCCCC
Q psy9621 137 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-------EYGVRFMETSAKANIN 209 (253)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~g 209 (253)
..... .+.+.... .+..|++.+||+++.|
T Consensus 212 ---------------------a~~~~-----------------------~el~~~L~l~~~~~~~w~~pVi~vSA~~g~G 247 (332)
T PRK09435 212 ---------------------ARRAA-----------------------AEYRSALRLLRPKDPGWQPPVLTCSALEGEG 247 (332)
T ss_pred ---------------------HHHHH-----------------------HHHHHHHhcccccccCCCCCEEEEECCCCCC
Confidence 00000 01111111 1335899999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q psy9621 210 IEKAFIELATAIYDKT 225 (253)
Q Consensus 210 i~~l~~~l~~~~~~~~ 225 (253)
+++|++.|.+......
T Consensus 248 IdeL~~~I~~~~~~l~ 263 (332)
T PRK09435 248 IDEIWQAIEDHRAALT 263 (332)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999776433
No 303
>KOG3886|consensus
Probab=99.12 E-value=6.9e-11 Score=90.99 Aligned_cols=118 Identities=22% Similarity=0.331 Sum_probs=80.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc-----cccchhhhcCc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF-----HTITTSYYRGA 82 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~~~~ 82 (253)
.-||+++|.+|+|||++-..+......- ...++-.+|+....+.+- ++..+.+||++|++.+ .......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 4589999999999999887666332211 122332335554444444 3566999999999854 22345678999
Q ss_pred cEEEEEEeCCChhhHHHHH---HHHHHHHHhcccccceeEEeeeecccc
Q psy9621 83 MGIMLVYDITNEKSFDNIL---KWLRNIDEHANEDVEKMILGKTKDTAG 128 (253)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~---~~~~~i~~~~~~~~p~iiv~nK~D~~~ 128 (253)
+++|.|||++..+--.++. .-++.+.++. ++..+.+...|.|+..
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcc
Confidence 9999999999876444443 3444555554 7788999999999973
No 304
>KOG0465|consensus
Probab=99.12 E-value=3.1e-10 Score=98.42 Aligned_cols=218 Identities=16% Similarity=0.154 Sum_probs=143.0
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCC-----CCCc-----------ccCccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDA-----FNTT-----------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (253)
+-....+|.++-+-.+||||+.++++.-. +... .....|++...-.....+++..++++|||||
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH 114 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence 44567789999999999999999987411 1110 0011233333333334455788999999999
Q ss_pred ccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccc-----------
Q psy9621 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITT----------- 137 (253)
Q Consensus 69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~----------- 137 (253)
-.|.--....++-.|+++++++....-.-+....|.+. ...++|.+.+.||+|.-++.-.+.+..
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~----~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~ 190 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM----KRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAV 190 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHH----HhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchhe
Confidence 99999999999999999999998776555555566544 234799999999999988864433332
Q ss_pred ----------------------cccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhcc------chhHH
Q psy9621 138 ----------------------SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC------KHRGE 189 (253)
Q Consensus 138 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 189 (253)
.++....+..+..+--..+..+.+.+.++++.++..+.++.+.+... .+...
T Consensus 191 vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~ 270 (721)
T KOG0465|consen 191 VQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLK 270 (721)
T ss_pred eEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHH
Confidence 23334444444444444555555556666666655444443322221 22222
Q ss_pred HHHHH----hC-CceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 190 AIARE----YG-VRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 190 ~~~~~----~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
...++ .. +|++-.||..+.||.-+++.++..+..-.+
T Consensus 271 ~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~E 312 (721)
T KOG0465|consen 271 AAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSE 312 (721)
T ss_pred HHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhh
Confidence 22222 12 699999999999999999999999876443
No 305
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.10 E-value=1.1e-09 Score=91.91 Aligned_cols=112 Identities=11% Similarity=0.138 Sum_probs=57.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccC--ccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc-----hhh
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFIS--TIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT-----TSY 78 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----~~~ 78 (253)
...++|+|+|.+|+|||||||.|.+-.-. +...+ .+..+......... ....+.+||.||..-..... ..-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 45789999999999999999999752211 11111 11112222222222 22359999999964322222 223
Q ss_pred hcCccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeecc
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDT 126 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~ 126 (253)
+...|.+|++.+- + |.... .....+.+ .+.|+++|-+|+|.
T Consensus 112 ~~~yD~fiii~s~--r--f~~ndv~La~~i~~---~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 112 FYRYDFFIIISSE--R--FTENDVQLAKEIQR---MGKKFYFVRTKVDS 153 (376)
T ss_dssp GGG-SEEEEEESS--S----HHHHHHHHHHHH---TT-EEEEEE--HHH
T ss_pred ccccCEEEEEeCC--C--CchhhHHHHHHHHH---cCCcEEEEEecccc
Confidence 5678988887552 2 33322 33344444 36899999999996
No 306
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.08 E-value=5e-09 Score=88.04 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=52.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeE---------------EEEEEEeCCCcccc---
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKK---------------IKLQIWDTAGQERF--- 71 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~--- 71 (253)
++|.++|.||||||||+|++.+........|...++...-.+.+.+.. .++.++|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 799999999999999999999866332211211112221122222211 35899999996431
Q ss_pred -cccchh---hhcCccEEEEEEeCC
Q psy9621 72 -HTITTS---YYRGAMGIMLVYDIT 92 (253)
Q Consensus 72 -~~~~~~---~~~~~d~~ilv~d~~ 92 (253)
..+... .++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 222223 357899999999974
No 307
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.07 E-value=4.5e-09 Score=88.47 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=70.7
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcC----CCCC----------cccCccc---eeeEE-----EEEee---CCeEEEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDD----AFNT----------TFISTIG---IDFKI-----KTVDL---KGKKIKL 60 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~----~~~~----------~~~~~~~---~~~~~-----~~~~~---~~~~~~~ 60 (253)
.+-.+.|.|+|+.++|||||+++|.+. .... -..+.-| ++-.+ ..+.+ .+-...+
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 455789999999999999999999876 2220 0111112 11111 11222 2345678
Q ss_pred EEEeCCCcccc--------cc--c-------------------chhhhc-CccEEEEEE-eCC----ChhhHHHH-HHHH
Q psy9621 61 QIWDTAGQERF--------HT--I-------------------TTSYYR-GAMGIMLVY-DIT----NEKSFDNI-LKWL 104 (253)
Q Consensus 61 ~l~Dt~G~~~~--------~~--~-------------------~~~~~~-~~d~~ilv~-d~~----~~~s~~~~-~~~~ 104 (253)
.++||+|...- .. + .+..+. .+++.|+|. |.+ .++.+... .+++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 99999985211 11 0 122344 788888887 653 12333333 3566
Q ss_pred HHHHHhcccccceeEEeeeec
Q psy9621 105 RNIDEHANEDVEKMILGKTKD 125 (253)
Q Consensus 105 ~~i~~~~~~~~p~iiv~nK~D 125 (253)
.++.+ .++|+++++||.|
T Consensus 174 ~eLk~---~~kPfiivlN~~d 191 (492)
T TIGR02836 174 EELKE---LNKPFIILLNSTH 191 (492)
T ss_pred HHHHh---cCCCEEEEEECcC
Confidence 66554 5799999999999
No 308
>KOG0705|consensus
Probab=99.07 E-value=4.6e-10 Score=96.22 Aligned_cols=166 Identities=20% Similarity=0.355 Sum_probs=122.4
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
.+-+.+|+.++|..++|||+|+++++.+.+.....|. +-.|. ..+.+.+....+.+.|.+|... ..|...+|+
T Consensus 26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~~k-kE~vv~gqs~lLlirdeg~~~~-----aQft~wvda 98 (749)
T KOG0705|consen 26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGRFK-KEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDA 98 (749)
T ss_pred cccchhheeeeecccCCceeeeeeeccceeccccCCc-Cccce-eeEEeeccceEeeeecccCCch-----hhhhhhccc
Confidence 3456889999999999999999999998888774443 43444 3444666777788889888432 347789999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+||||.+-+..+|+.+..+...+..+. ...+|.++++++.-....
T Consensus 99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~---------------------------------- 144 (749)
T KOG0705|consen 99 VVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAK---------------------------------- 144 (749)
T ss_pred eEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcc----------------------------------
Confidence 999999999999999887777765443 357888888876533210
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHh-CCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +.....++++..+ .+.+|++.+.+|.++...|..+...+.....
T Consensus 145 ----------~~rv-----~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~ 193 (749)
T KOG0705|consen 145 ----------RPRV-----ITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQLRK 193 (749)
T ss_pred ----------cccc-----cchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHHHh
Confidence 1111 4444555555555 4899999999999999999999887766543
No 309
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.04 E-value=2.1e-09 Score=81.65 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=44.9
Q ss_pred EEEEEeCCCccc----ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeee
Q psy9621 59 KLQIWDTAGQER----FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124 (253)
Q Consensus 59 ~~~l~Dt~G~~~----~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~ 124 (253)
.+.++||||... ...+...+++.+|++|+|.+.++..+-.....+.+...... ..+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~---~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK---SRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC---SSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC---CeEEEEEcCC
Confidence 478999999743 23556778899999999999998766555555555554433 3388888884
No 310
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.03 E-value=3.3e-09 Score=80.18 Aligned_cols=35 Identities=11% Similarity=0.019 Sum_probs=26.8
Q ss_pred hHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 187 RGEAIAREYG--VRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 187 ~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
...+-+++.+ .+++++|+++|+|++++++++....
T Consensus 164 vm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 164 VMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3344444443 8999999999999999999987653
No 311
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.02 E-value=1.9e-08 Score=82.48 Aligned_cols=117 Identities=20% Similarity=0.299 Sum_probs=67.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcc----------cCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc--
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTF----------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT-- 75 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-- 75 (253)
..++|+|+|.+|+|||||++.|.+....... .++..+......+.-++..+.+.++||||........
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999875543321 1223333333344445677889999999953211100
Q ss_pred ------------hhh-------------hcCccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccc
Q psy9621 76 ------------TSY-------------YRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129 (253)
Q Consensus 76 ------------~~~-------------~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 129 (253)
..+ =...|++++.++.+... +..+. .....+. .-+++|.|+.|.|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT----TTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc----ccccEEeEEecccccCH
Confidence 000 12468899999876532 11111 2333332 45788999999998743
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.00 E-value=6.5e-09 Score=86.34 Aligned_cols=110 Identities=14% Similarity=0.091 Sum_probs=63.8
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT 136 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 136 (253)
.+.+.++||+|..... ......+|.++++.+.... ..+......+ .+.|.++++||+|+.+....
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~---- 190 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNV---- 190 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHH----
Confidence 4678999999864222 2356677888877443322 3333333322 35788999999998632100
Q ss_pred ccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH---HhCCceEEeeccCCCCHHHH
Q psy9621 137 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR---EYGVRFMETSAKANINIEKA 213 (253)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~l 213 (253)
...... .. .....+.+ .+..+++.+||+++.|++++
T Consensus 191 ----------------------~~~~~~------------------~~-~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L 229 (300)
T TIGR00750 191 ----------------------TIARLM------------------LA-LALEEIRRREDGWRPPVLTTSAVEGRGIDEL 229 (300)
T ss_pred ----------------------HHHHHH------------------HH-HHHhhccccccCCCCCEEEEEccCCCCHHHH
Confidence 000000 00 00011111 12347899999999999999
Q ss_pred HHHHHHHHH
Q psy9621 214 FIELATAIY 222 (253)
Q Consensus 214 ~~~l~~~~~ 222 (253)
++.|.....
T Consensus 230 ~~~i~~~~~ 238 (300)
T TIGR00750 230 WDAIEEHKT 238 (300)
T ss_pred HHHHHHHHH
Confidence 999988754
No 313
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.3e-08 Score=85.67 Aligned_cols=154 Identities=18% Similarity=0.123 Sum_probs=101.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCC---CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFN---TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
.|...|+-.-|||||+..+.+.... +.-...+.+|......... +..+.++|.||++++-...-..+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~--d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE--DGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC--CCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4778899999999999999875433 2223333334443333333 3478999999999887666667779999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcccccce-eEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHANEDVEK-MILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|++.++.-..+..+. + .+.... +++. +||++|+|.....
T Consensus 80 vV~~deGl~~qtgEh-L-~iLdll--gi~~giivltk~D~~d~~------------------------------------ 119 (447)
T COG3276 80 VVAADEGLMAQTGEH-L-LILDLL--GIKNGIIVLTKADRVDEA------------------------------------ 119 (447)
T ss_pred EEeCccCcchhhHHH-H-HHHHhc--CCCceEEEEeccccccHH------------------------------------
Confidence 999965433332221 1 122222 4555 9999999987210
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHH---HhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAR---EYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
...+...++.+ --..++|.+|+++|.||++|.+.|..+..
T Consensus 120 ----------------r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 120 ----------------RIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred ----------------HHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 00111111111 12367899999999999999999999885
No 314
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.94 E-value=5.3e-09 Score=85.09 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=22.5
Q ss_pred CCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 196 GVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 196 ~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
..+++.+||++|+|+++++++|...
T Consensus 263 ~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 263 EIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3799999999999999999999763
No 315
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.93 E-value=1.9e-08 Score=83.25 Aligned_cols=182 Identities=13% Similarity=0.067 Sum_probs=106.8
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCccc--------------CccceeeEEEEEeeCCe-------------
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFI--------------STIGIDFKIKTVDLKGK------------- 56 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~------------- 56 (253)
......+.|.+.|+-+.|||||+-.|..+..+...- .....+.....+-++++
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 345678999999999999999998887665543200 00011111111111111
Q ss_pred --------EEEEEEEeCCCcccccc--cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecc
Q psy9621 57 --------KIKLQIWDTAGQERFHT--ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126 (253)
Q Consensus 57 --------~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~ 126 (253)
+.-+.+.||.||+.|-. ++..+-...|-.++++.+++.-+--. +...-+.- .-++|++++.+|+|+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~--a~~lPviVvvTK~D~ 267 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIAL--AMELPVIVVVTKIDM 267 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhh--hhcCCEEEEEEeccc
Confidence 23478999999999843 44555677899999998887543222 11111111 247999999999999
Q ss_pred ccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhH--HHHHHHhC---CceEE
Q psy9621 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG--EAIAREYG---VRFME 201 (253)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~ 201 (253)
. .++.+..+.+-...+.+.....+-.. .+.+.. ...+-+.+ +|+|.
T Consensus 268 ~--------------------------~ddr~~~v~~ei~~~Lk~v~Rip~~v---k~~~d~v~aa~a~k~~~~vvPi~~ 318 (527)
T COG5258 268 V--------------------------PDDRFQGVVEEISALLKRVGRIPLIV---KDTDDVVLAAKAMKAGRGVVPIFY 318 (527)
T ss_pred C--------------------------cHHHHHHHHHHHHHHHHHhcccceee---eccchhHHhhhhhhcCCceEEEEE
Confidence 7 34445555555554444433222110 111111 12222222 69999
Q ss_pred eeccCCCCHHHHHHHHH
Q psy9621 202 TSAKANINIEKAFIELA 218 (253)
Q Consensus 202 ~Sa~~~~gi~~l~~~l~ 218 (253)
+|+.||+|++-|.+.+.
T Consensus 319 tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 319 TSSVTGEGLDLLDEFFL 335 (527)
T ss_pred EecccCccHHHHHHHHH
Confidence 99999999987555443
No 316
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.92 E-value=1.2e-08 Score=90.50 Aligned_cols=123 Identities=19% Similarity=0.223 Sum_probs=74.7
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceee-EEEEEeeCCeEEEEEEEeCCCccccc-------cc--
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDF-KIKTVDLKGKKIKLQIWDTAGQERFH-------TI-- 74 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~-- 74 (253)
+-+..++|+|+|.+|+||||++|.+++...........+.+. ........ ...+.++||||..... ..
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk 191 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILS 191 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHHHHH
Confidence 345678999999999999999999998764332211111111 11122223 3569999999976431 11
Q ss_pred -chhhhc--CccEEEEEEeCCChhhHHHHHHHHHHHHHhccc--ccceeEEeeeeccccc
Q psy9621 75 -TTSYYR--GAMGIMLVYDITNEKSFDNILKWLRNIDEHANE--DVEKMILGKTKDTAGQ 129 (253)
Q Consensus 75 -~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~D~~~~ 129 (253)
...++. ++|++|+|..++.......-..++..+...++. -.-.||+.++.|...+
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 112333 589999998876443322223455555555432 2467888888888753
No 317
>KOG0410|consensus
Probab=98.89 E-value=4.2e-09 Score=85.27 Aligned_cols=157 Identities=15% Similarity=0.091 Sum_probs=94.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc--cccch------hh
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF--HTITT------SY 78 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~------~~ 78 (253)
.+-.-|.|+|.+|+|||||+++|......+...-.-..|.+.+...+..+. .+.+.||.|.-.- ..+.. .-
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 344579999999999999999999654433322111123333333344333 4788899996321 11111 12
Q ss_pred hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccccee----EEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKM----ILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i----iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
...+|.++-|.|+++|+--+.....+..+.+..=.+.|.+ =|-||+|...
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~-------------------------- 308 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE-------------------------- 308 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc--------------------------
Confidence 4679999999999999855544444444444322234433 3456666541
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
. .--.+.++ .+.+||++|.|++++.+.+-......+
T Consensus 309 --------------------~-------------~~e~E~n~--~v~isaltgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 309 --------------------D-------------EVEEEKNL--DVGISALTGDGLEELLKAEETKVASET 344 (410)
T ss_pred --------------------c-------------cCccccCC--ccccccccCccHHHHHHHHHHHhhhhh
Confidence 1 10111222 478999999999999998877665543
No 318
>KOG0082|consensus
Probab=98.89 E-value=1.3e-08 Score=84.46 Aligned_cols=140 Identities=11% Similarity=0.147 Sum_probs=84.9
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhh-------HHHHH---HHHHHHHHhc-ccccceeEEeeee
Q psy9621 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS-------FDNIL---KWLRNIDEHA-NEDVEKMILGKTK 124 (253)
Q Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s-------~~~~~---~~~~~i~~~~-~~~~p~iiv~nK~ 124 (253)
+...+.++|.+||...+.-|-..+.+++++|||++++..+- ...+. ..++.|..+. -.+.++++++||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 34679999999998778888889999999999999986432 12222 3444443332 2679999999999
Q ss_pred ccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchh----hhhhccchhHHHHHHHh--CCc
Q psy9621 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV----VNSWVCKHRGEAIAREY--GVR 198 (253)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~ 198 (253)
|+...... ...+..++++.... -.........+++.+.. .+-
T Consensus 273 DLFeEKi~--------------------------------~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy 320 (354)
T KOG0082|consen 273 DLFEEKIK--------------------------------KVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIY 320 (354)
T ss_pred HHHHHHhc--------------------------------cCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcce
Confidence 99743221 01111111111110 00001111112222222 244
Q ss_pred eEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621 199 FMETSAKANINIEKAFIELATAIYDKTSG 227 (253)
Q Consensus 199 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 227 (253)
.-.+.|.+-.+|+.+|+.....+......
T Consensus 321 ~h~T~AtDT~nv~~vf~av~d~Ii~~nlk 349 (354)
T KOG0082|consen 321 VHFTCATDTQNVQFVFDAVTDTIIQNNLK 349 (354)
T ss_pred EEEEeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888889999999999888876543
No 319
>KOG0468|consensus
Probab=98.89 E-value=1.3e-08 Score=89.36 Aligned_cols=119 Identities=21% Similarity=0.240 Sum_probs=84.9
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc---------cc--------CccceeeEEEEEee---CCeEEEEEEEe
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT---------FI--------STIGIDFKIKTVDL---KGKKIKLQIWD 64 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~---------~~--------~~~~~~~~~~~~~~---~~~~~~~~l~D 64 (253)
..+..++|.++|+-+.|||+|+..|....-+.. |. +..++-..+.++-. +++.+-++++|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 345678999999999999999998864322211 11 11122222333322 45667889999
Q ss_pred CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
||||-.|.......++.+|++++++|+...-.+..-+-..+.+ ..+.|+.++.||+|..
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai----q~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI----QNRLPIVVVINKVDRL 262 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH----hccCcEEEEEehhHHH
Confidence 9999999888889999999999999998776665533333333 3578999999999975
No 320
>KOG0467|consensus
Probab=98.86 E-value=9.4e-09 Score=91.41 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=90.9
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCC--------------CcccCccceeeEEEEEeeCCeEEEEEEEeCC
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFN--------------TTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 66 (253)
|.+++.+...+++++-+-.=|||||...|....-. .....+-|+++....+.+-.+.+.++++|+|
T Consensus 1 ~~~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidsp 80 (887)
T KOG0467|consen 1 ALQKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSP 80 (887)
T ss_pred CCCCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCC
Confidence 56788899999999999999999999998642211 1122345777776677766678889999999
Q ss_pred CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecc
Q psy9621 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126 (253)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~ 126 (253)
||-+|....+...+-+|++++++|+...-.-+. +.-+++.-..+...++|+||+|.
T Consensus 81 ghvdf~sevssas~l~d~alvlvdvvegv~~qt----~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 81 GHVDFSSEVSSASRLSDGALVLVDVVEGVCSQT----YAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred CccchhhhhhhhhhhcCCcEEEEeeccccchhH----HHHHHHHHHccCceEEEEehhhh
Confidence 999999999999999999999999976432222 12222222245677788899994
No 321
>KOG1486|consensus
Probab=98.85 E-value=1.3e-07 Score=74.14 Aligned_cols=198 Identities=18% Similarity=0.224 Sum_probs=110.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEE-----EEeeCCeEEEEEEEeCCCccccccc-------ch
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIK-----TVDLKGKKIKLQIWDTAGQERFHTI-------TT 76 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~ 76 (253)
.-+|+++|-|.+|||||+..+...+-... +.+|... .+.+++ ..+++.|.||..+-... .-
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA-----~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQvi 134 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAA-----SYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVI 134 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhh-----ceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEE
Confidence 46899999999999999999986433221 1222222 233333 45899999996432211 12
Q ss_pred hhhcCccEEEEEEeCCChhhHH-HHHHHHHHHHHhcccccceeEEeeee-cccc-----c------cccccccccccccc
Q psy9621 77 SYYRGAMGIMLVYDITNEKSFD-NILKWLRNIDEHANEDVEKMILGKTK-DTAG-----Q------ERFHTITTSYYRGA 143 (253)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~~~~p~iiv~nK~-D~~~-----~------~~~~~~~~~~~~~~ 143 (253)
...+-+|.+++|.|++..+.-. .+.+.++.+--...+..|-+-+-.|- .... + .....+...|....
T Consensus 135 avArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~N 214 (364)
T KOG1486|consen 135 AVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHN 214 (364)
T ss_pred EEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeecc
Confidence 3457899999999999876433 33445555432223344444332211 1100 0 01111122244444
Q ss_pred eeeEEEEeccCccchhhHHH----HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621 144 MGIMLVYDITNEKSFDNILK----WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
..++..-|++. +.|-++.. +...+.-+. +.+. ++.++...+++..+- +.+|+....|++.+++.|+.
T Consensus 215 aevl~ReD~t~-DdfIDvi~gnr~Y~~ClYvYn-KID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe 285 (364)
T KOG1486|consen 215 AEVLFREDCTV-DDFIDVIEGNRVYIKCLYVYN-KIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWE 285 (364)
T ss_pred ceEEEecCCCh-HHHHHHHhccceEEEEEEEee-ccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHH
Confidence 55555555444 33444432 222222221 2222 566677777766653 66788889999999999998
Q ss_pred HHH
Q psy9621 220 AIY 222 (253)
Q Consensus 220 ~~~ 222 (253)
.+.
T Consensus 286 ~l~ 288 (364)
T KOG1486|consen 286 ELN 288 (364)
T ss_pred Hhc
Confidence 764
No 322
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.85 E-value=2.6e-08 Score=79.45 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=43.2
Q ss_pred EEEEEEeCCCccc-------------ccccchhhhcC-ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeee
Q psy9621 58 IKLQIWDTAGQER-------------FHTITTSYYRG-AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123 (253)
Q Consensus 58 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~-~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK 123 (253)
..+.++||||... ...+...|++. .+++++|+|++..-.-....+..+.+. ..+.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 4688999999742 12344567774 458888988765322222223333332 257899999999
Q ss_pred ecccc
Q psy9621 124 KDTAG 128 (253)
Q Consensus 124 ~D~~~ 128 (253)
.|...
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99973
No 323
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.84 E-value=1.9e-08 Score=78.05 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=63.8
Q ss_pred ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEE
Q psy9621 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVY 150 (253)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (253)
+..++..+++.+|++++|+|++++.. .|...+.... .+.|+++|+||+|+..+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~--------------------- 76 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPK--------------------- 76 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCC---------------------
Confidence 46777888999999999999987642 1222222222 46899999999998621
Q ss_pred eccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHH-----HHhCC---ceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 151 DITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIA-----REYGV---RFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
. ........+. +..+. +++++||++|.|+++++..|...+.
T Consensus 77 -------------------------~------~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 77 -------------------------D------KNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred -------------------------C------CCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 1 0111111221 22332 6899999999999999999988764
No 324
>KOG1143|consensus
Probab=98.78 E-value=1.7e-07 Score=77.54 Aligned_cols=179 Identities=16% Similarity=0.139 Sum_probs=102.3
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-----------------------ccCccceeeEEEEEeeCCe------
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-----------------------FISTIGIDFKIKTVDLKGK------ 56 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~------ 56 (253)
+--.++++|+|-..+|||||+--+..+..+.. ....+|++..-..+++...
T Consensus 164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 34578999999999999999977654332211 1123343333333333211
Q ss_pred ----EEEEEEEeCCCcccccccchhhhc--CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621 57 ----KIKLQIWDTAGQERFHTITTSYYR--GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 57 ----~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 130 (253)
...+.++|.+|+..|....-..+. .+|.+.+|++++..-.+..- +-+-.+.. -++|++++.+|+|+...
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~A---L~iPfFvlvtK~Dl~~~- 318 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLIAA---LNIPFFVLVTKMDLVDR- 318 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHHHH---hCCCeEEEEEeeccccc-
Confidence 235789999999998665433332 46778888887765444332 22222222 47999999999999833
Q ss_pred ccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhh--ccchhHHHHHHH----hCCceEEeec
Q psy9621 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW--VCKHRGEAIARE----YGVRFMETSA 204 (253)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~Sa 204 (253)
...+...+-+..+.+.. ....+.. -..+++-..+++ .-+|+|-+|+
T Consensus 319 -------------------------~~~~~tv~~l~nll~~~---Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSs 370 (591)
T KOG1143|consen 319 -------------------------QGLKKTVKDLSNLLAKA---GCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSS 370 (591)
T ss_pred -------------------------hhHHHHHHHHHHHHhhc---CccccceEeechHHHHHHHHHhccCCceeEEEEee
Confidence 22333333333322221 1111000 123333333333 3379999999
Q ss_pred cCCCCHHHHHHHH
Q psy9621 205 KANINIEKAFIEL 217 (253)
Q Consensus 205 ~~~~gi~~l~~~l 217 (253)
.+|+|++-+...|
T Consensus 371 VsGegl~ll~~fL 383 (591)
T KOG1143|consen 371 VSGEGLRLLRTFL 383 (591)
T ss_pred cCccchhHHHHHH
Confidence 9999988655443
No 325
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.77 E-value=1.9e-08 Score=74.23 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=39.2
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (253)
+++++|.+|+|||||+|++.+...... ....|.+.....+.+.. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 899999999999999999997765432 23334444444454443 4899999995
No 326
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.76 E-value=3.7e-08 Score=80.17 Aligned_cols=81 Identities=15% Similarity=0.186 Sum_probs=50.8
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCe---------------EEEEEEEeCCCcccc----c
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK---------------KIKLQIWDTAGQERF----H 72 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~----~ 72 (253)
|+++|.||||||||+|++.+........|...++...-.+.+.+. ...+.++|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999987653322222212222222333322 125899999996421 2
Q ss_pred ccchhh---hcCccEEEEEEeCC
Q psy9621 73 TITTSY---YRGAMGIMLVYDIT 92 (253)
Q Consensus 73 ~~~~~~---~~~~d~~ilv~d~~ 92 (253)
++...| ++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 222333 56899999999863
No 327
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=3.5e-08 Score=79.03 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=77.1
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcC---C-------CCCc----ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDD---A-------FNTT----FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~---~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 71 (253)
.-+.+||..+|+-+=|||||..++... . +... -....|++.....+.+.-.+..+-..|+|||..|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 446789999999999999999887521 0 1110 0123466666666766666667888999999988
Q ss_pred cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccc-ceeEEeeeeccc
Q psy9621 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDV-EKMILGKTKDTA 127 (253)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~-p~iiv~nK~D~~ 127 (253)
....-.-.-+.|++|+|+++++.---+.... ++-...-+. .+++++||+|+.
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEH----iLlarqvGvp~ivvflnK~Dmv 141 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREH----ILLARQVGVPYIVVFLNKVDMV 141 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhh----hhhhhhcCCcEEEEEEeccccc
Confidence 5433334457899999999987431111111 111111355 567789999997
No 328
>PRK12289 GTPase RsgA; Reviewed
Probab=98.76 E-value=5.4e-08 Score=82.07 Aligned_cols=91 Identities=13% Similarity=0.195 Sum_probs=66.6
Q ss_pred ccchhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEe
Q psy9621 73 TITTSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYD 151 (253)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (253)
.+.+..+.++|.+++|+|+.++. +...+.+|+..+.. .++|+++|+||+|+.
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv------------------------ 133 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLV------------------------ 133 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcC------------------------
Confidence 34455688999999999998876 45566777766532 579999999999985
Q ss_pred ccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621 152 ITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
...+ . ....+..+.++++++.+||+++.|+++|++.|..
T Consensus 134 ----------------------~~~~-----~--~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 134 ----------------------SPTE-----Q--QQWQDRLQQWGYQPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred ----------------------ChHH-----H--HHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhcc
Confidence 1111 0 1112233466788999999999999999988864
No 329
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.75 E-value=3.8e-08 Score=73.83 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=64.0
Q ss_pred ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEE
Q psy9621 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVY 150 (253)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (253)
|..+.+...+++|++|+|+|++++..... ..+...+ . ..+.|+++++||+|+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~-~--~~~~p~iiv~NK~Dl~----------------------- 54 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV-L--ELGKKLLIVLNKADLV----------------------- 54 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH-H--hCCCcEEEEEEhHHhC-----------------------
Confidence 34566778889999999999987643222 1222222 1 2468999999999985
Q ss_pred eccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 151 DITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.... . .....+.+..+.+++.+||+++.|++++++.+...+.
T Consensus 55 -----------------------~~~~-----~--~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 55 -----------------------PKEV-----L--EKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred -----------------------CHHH-----H--HHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 1110 0 0111233345678999999999999999999988765
No 330
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.73 E-value=4.9e-08 Score=80.56 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=67.1
Q ss_pred hhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 76 TSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
...+.++|.+++|+|++++. ++..+.+|+..+.. .++|+++|+||+|+.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~--------------------------- 122 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLL--------------------------- 122 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCC---------------------------
Confidence 34578999999999999998 88888888877654 479999999999986
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
.... ...........+.+++.+||+++.|+++|+..|..
T Consensus 123 -------------------~~~~-------~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 123 -------------------DDEE-------EELELVEALALGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred -------------------ChHH-------HHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhcc
Confidence 1110 01123334456789999999999999999887763
No 331
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.73 E-value=2.3e-08 Score=79.31 Aligned_cols=105 Identities=13% Similarity=0.131 Sum_probs=62.3
Q ss_pred EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccc
Q psy9621 58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITT 137 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 137 (253)
+.+.+++|.|--+-+ .....-+|.+++|......+..+.+..-+.+ ++-++|.||.|..+++..
T Consensus 122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE--------iaDi~vVNKaD~~gA~~~----- 185 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIME--------IADIFVVNKADRPGADRT----- 185 (266)
T ss_dssp -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHH--------H-SEEEEE--SHHHHHHH-----
T ss_pred CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhh--------hccEEEEeCCChHHHHHH-----
Confidence 457788888743211 1245678999999987777666665554444 466789999997643221
Q ss_pred cccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHH----HHhCCceEEeeccCCCCHHHH
Q psy9621 138 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIA----REYGVRFMETSAKANINIEKA 213 (253)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l 213 (253)
..++ .....+. ..+.-|++.|||.++.|+++|
T Consensus 186 --------------------~~~l------------------------~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL 221 (266)
T PF03308_consen 186 --------------------VRDL------------------------RSMLHLLREREDGWRPPVLKTSALEGEGIDEL 221 (266)
T ss_dssp --------------------HHHH------------------------HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHH
T ss_pred --------------------HHHH------------------------HHHHhhccccccCCCCCEEEEEeCCCCCHHHH
Confidence 0000 0000111 112358999999999999999
Q ss_pred HHHHHHHHH
Q psy9621 214 FIELATAIY 222 (253)
Q Consensus 214 ~~~l~~~~~ 222 (253)
++.|.+.-.
T Consensus 222 ~~~i~~~~~ 230 (266)
T PF03308_consen 222 WEAIDEHRD 230 (266)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887543
No 332
>PRK00098 GTPase RsgA; Reviewed
Probab=98.71 E-value=6.3e-08 Score=80.35 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=63.5
Q ss_pred hhcCccEEEEEEeCCChhhHHH-HHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621 78 YYRGAMGIMLVYDITNEKSFDN-ILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK 156 (253)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (253)
...++|.+++|+|++++..... +.+|+..+.. .++|+++|+||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~----------------------------- 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLL----------------------------- 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcC-----------------------------
Confidence 4589999999999988865444 4677766543 579999999999985
Q ss_pred chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHH
Q psy9621 157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218 (253)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 218 (253)
.... ......+..+..+++++++||+++.|++++++.+.
T Consensus 125 -----------------~~~~------~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 125 -----------------DDLE------EARELLALYRAIGYDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred -----------------CCHH------HHHHHHHHHHHCCCeEEEEeCCCCccHHHHHhhcc
Confidence 1111 11123344556678999999999999999998764
No 333
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.69 E-value=5.2e-08 Score=74.14 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=40.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCC
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 67 (253)
..++++|+|.||+|||||+|++.+...... .+..|++.....+.+. ..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeC---CCEEEEECcC
Confidence 358999999999999999999998655333 3334555554444443 2588999998
No 334
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.68 E-value=7.4e-08 Score=72.35 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=37.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCC
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 67 (253)
..++|+++|.+|||||||+|++.+...... .+..|.+.....+... -.+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLM---KRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcC---CCEEEEECcC
Confidence 467899999999999999999987554332 2233434333333322 2378999998
No 335
>KOG2486|consensus
Probab=98.68 E-value=4.7e-08 Score=77.72 Aligned_cols=115 Identities=19% Similarity=0.161 Sum_probs=71.3
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccC-ccceeeEEEEEeeCCeEEEEEEEeCCCc----------cccc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFIS-TIGIDFKIKTVDLKGKKIKLQIWDTAGQ----------ERFH 72 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~ 72 (253)
.|++....++++|-+|+|||+|++.+...+....... ..|-+ +.++...-...+.+.|.||- .++.
T Consensus 131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T---q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~ 207 (320)
T KOG2486|consen 131 CPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT---QAINHFHVGKSWYEVDLPGYGRAGYGFELPADWD 207 (320)
T ss_pred CCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc---eeeeeeeccceEEEEecCCcccccCCccCcchHh
Confidence 4567789999999999999999999986554433222 33422 23333333456899999992 2344
Q ss_pred ccchhhhcCcc---EEEEEEeCCChhh-HHH-HHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 73 TITTSYYRGAM---GIMLVYDITNEKS-FDN-ILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 73 ~~~~~~~~~~d---~~ilv~d~~~~~s-~~~-~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.....|+.+-+ -+++++|++.+-. -+. ...|+.+ .++|..+|.||+|..
T Consensus 208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 208 KFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQ 261 (320)
T ss_pred HhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhh
Confidence 44455554332 3455556654321 111 1134333 589999999999975
No 336
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=7.9e-07 Score=74.05 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=54.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCC-c-----ccCccceeeEEEE--------Ee--eCCeEEEEEEEeCCCc----
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNT-T-----FISTIGIDFKIKT--------VD--LKGKKIKLQIWDTAGQ---- 68 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~-~-----~~~~~~~~~~~~~--------~~--~~~~~~~~~l~Dt~G~---- 68 (253)
-+++.++|.||||||||.|++....... + ..|.+|+.+-+-. .. .......+.++|.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 3789999999999999999999765431 1 1233333222110 00 0112356889998874
Q ss_pred ccccccchhh---hcCccEEEEEEeCC
Q psy9621 69 ERFHTITTSY---YRGAMGIMLVYDIT 92 (253)
Q Consensus 69 ~~~~~~~~~~---~~~~d~~ilv~d~~ 92 (253)
++-+++-..| +|.+|+++-|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 4556666666 47899999999966
No 337
>KOG3887|consensus
Probab=98.67 E-value=1.8e-07 Score=72.91 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=73.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEE--EeeCCeEEEEEEEeCCCccccccc---chhhhcCcc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKT--VDLKGKKIKLQIWDTAGQERFHTI---TTSYYRGAM 83 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~d 83 (253)
..+|+++|...+||||+..-......+.. |...+.+.+. -.+...-+.+.+||.||+-.+..- ....++++.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPne---TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g 103 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNE---TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG 103 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCc---eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence 35799999999999999876665443322 2221111110 011223467999999999655332 356789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhc--ccccceeEEeeeeccc
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHA--NEDVEKMILGKTKDTA 127 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~ 127 (253)
++|+|+|+.+. -++.+.++...+.+.. .+++.+=++..|.|..
T Consensus 104 ALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 104 ALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred eEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 99999998643 1333333333333322 3789999999999986
No 338
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.64 E-value=5.9e-07 Score=74.39 Aligned_cols=117 Identities=17% Similarity=0.279 Sum_probs=74.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCc----------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc---cc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT----------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF---HT 73 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~ 73 (253)
...++|+++|+.|.|||||+|.|++...... ..+++.+......+.-++-...+.++||||..++ ..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 5678999999999999999999987533222 3455555666566666677789999999996432 11
Q ss_pred cc-----------hhhh--------------cCccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccc
Q psy9621 74 IT-----------TSYY--------------RGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 74 ~~-----------~~~~--------------~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.| ..|+ ..++++++.+..+.. ++..+. +....+. ..+-+|-|.-|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence 11 1111 236778887775532 233332 2333333 345677777899987
Q ss_pred c
Q psy9621 128 G 128 (253)
Q Consensus 128 ~ 128 (253)
.
T Consensus 176 T 176 (373)
T COG5019 176 T 176 (373)
T ss_pred C
Confidence 3
No 339
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.63 E-value=1.1e-07 Score=72.43 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=41.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (253)
...++++++|.+|+|||||++++....+... .+..+.+.....+.+. ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3457999999999999999999998766422 3333445554444443 35889999994
No 340
>PRK12288 GTPase RsgA; Reviewed
Probab=98.62 E-value=2.3e-07 Score=78.28 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=65.6
Q ss_pred hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
..++|.+++|++++...++..+.+|+..+.. .++|.+||+||+|+.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~------------------------------- 163 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLL------------------------------- 163 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCC-------------------------------
Confidence 3568999999999888889999999876542 579999999999996
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
..... ..........+..+++++++||+++.|+++|++.|..
T Consensus 164 ---------------~~~~~----~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 164 ---------------DDEGR----AFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred ---------------CcHHH----HHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHHHHhh
Confidence 11100 0011122233456789999999999999999998865
No 341
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.61 E-value=1.4e-07 Score=70.66 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=40.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCC
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 67 (253)
...+++++|.+|+|||||++++.+.... ...++.|.+.....+... ..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~---~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKIT---SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcC---CCEEEEECcC
Confidence 4578999999999999999999965432 334555655443333332 2589999998
No 342
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.60 E-value=5.6e-07 Score=72.63 Aligned_cols=114 Identities=18% Similarity=0.107 Sum_probs=68.9
Q ss_pred EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccc
Q psy9621 58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITT 137 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 137 (253)
+.+.|++|.|-.+-. -....-+|.+++|.=..-.+..+.+..-+.++ --++|.||.|..+++..
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vINKaD~~~A~~a----- 207 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVINKADRKGAEKA----- 207 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEeccChhhHHHH-----
Confidence 457788888753322 12345688888887666666666666555443 55789999997643211
Q ss_pred cccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh--CCceEEeeccCCCCHHHHHH
Q psy9621 138 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY--GVRFMETSAKANINIEKAFI 215 (253)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~ 215 (253)
..++..- .....+..... .-|++.+||.+|+|+++|++
T Consensus 208 ------------------------~r~l~~a----------------l~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ 247 (323)
T COG1703 208 ------------------------ARELRSA----------------LDLLREVWRENGWRPPVVTTSALEGEGIDELWD 247 (323)
T ss_pred ------------------------HHHHHHH----------------HHhhcccccccCCCCceeEeeeccCCCHHHHHH
Confidence 0000000 00011112222 35899999999999999999
Q ss_pred HHHHHHHhccCC
Q psy9621 216 ELATAIYDKTSG 227 (253)
Q Consensus 216 ~l~~~~~~~~~~ 227 (253)
.+..........
T Consensus 248 ai~~h~~~~~~s 259 (323)
T COG1703 248 AIEDHRKFLTES 259 (323)
T ss_pred HHHHHHHHHHhc
Confidence 998866554443
No 343
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.58 E-value=1.3e-07 Score=80.55 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=69.5
Q ss_pred cccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeE
Q psy9621 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM 147 (253)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (253)
.+.|..+...+.+.++++++|+|+.+.. ..|..++.+.. .+.|+++|+||+|+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~------------------- 104 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLP------------------- 104 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCC-------------------
Confidence 4577888888889999999999997654 23555555554 4689999999999861
Q ss_pred EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHH
Q psy9621 148 LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.... .....+...++++.+++ .++++||++|.|+++++..|.+.
T Consensus 105 ---------------------------k~~~--~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 105 ---------------------------KSVN--LSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred ---------------------------CCCC--HHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1100 00111223344566675 48999999999999999998654
No 344
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.55 E-value=3e-07 Score=75.98 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=42.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (253)
...++++|+|.||||||||+|++.+...... .+..|.+.....+.+. ..+.++||||--
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLG---KGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeC---CcEEEEECCCcC
Confidence 4568999999999999999999998665333 3344555555545443 248899999973
No 345
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.53 E-value=2.7e-07 Score=75.78 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=41.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (253)
...++++|+|.||||||||+|++.+...... ....|.+.....+.+.. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 3468999999999999999999997654333 22334455444454432 4789999997
No 346
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.52 E-value=7.3e-07 Score=74.40 Aligned_cols=145 Identities=22% Similarity=0.215 Sum_probs=82.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCC----------ccc-----------CccceeeEEEEEee-------------C
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNT----------TFI-----------STIGIDFKIKTVDL-------------K 54 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~----------~~~-----------~~~~~~~~~~~~~~-------------~ 54 (253)
.--++|+|++|+||||++..+....... .++ ...++.+....... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999998875311000 000 01122222110000 1
Q ss_pred CeEEEEEEEeCCCccccccc----chhh--------hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEee
Q psy9621 55 GKKIKLQIWDTAGQERFHTI----TTSY--------YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGK 122 (253)
Q Consensus 55 ~~~~~~~l~Dt~G~~~~~~~----~~~~--------~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~n 122 (253)
...+.+.++||||....... ...+ -..++..++|+|++... ..+.+ ...+.+. --+.-+|.|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~---~~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA---VGLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh---CCCCEEEEE
Confidence 23457999999998543221 1111 12567889999998542 33322 1222221 135568889
Q ss_pred eeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEe
Q psy9621 123 TKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMET 202 (253)
Q Consensus 123 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (253)
|.|.. ...-....++...++|+.++
T Consensus 268 KlD~t-------------------------------------------------------~~~G~~l~~~~~~~~Pi~~v 292 (318)
T PRK10416 268 KLDGT-------------------------------------------------------AKGGVVFAIADELGIPIKFI 292 (318)
T ss_pred CCCCC-------------------------------------------------------CCccHHHHHHHHHCCCEEEE
Confidence 99965 22234456667779999999
Q ss_pred eccCCCCHHHHHHH
Q psy9621 203 SAKANINIEKAFIE 216 (253)
Q Consensus 203 Sa~~~~gi~~l~~~ 216 (253)
+ +|++++++-..
T Consensus 293 ~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 293 G--VGEGIDDLQPF 304 (318)
T ss_pred e--CCCChhhCccC
Confidence 9 88888876543
No 347
>KOG0464|consensus
Probab=98.52 E-value=4.9e-08 Score=81.62 Aligned_cols=119 Identities=16% Similarity=0.186 Sum_probs=94.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcC--------CCCCc--------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDD--------AFNTT--------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 71 (253)
...+|.++.+-.+||||...|+++- ..+.. ....-|++.....++++++..++.++||||+-.|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 4568999999999999999998741 11111 1122366777677888888899999999999999
Q ss_pred cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 130 (253)
+-.....++-.|+++.|||.+....-+.+..|.+. .+.++|...++||+|..++.
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhhhh
Confidence 99899999999999999999887666667778544 34579999999999988764
No 348
>KOG4273|consensus
Probab=98.51 E-value=2.5e-06 Score=67.02 Aligned_cols=185 Identities=18% Similarity=0.248 Sum_probs=106.1
Q ss_pred eeEEEEEcCCCC--cHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 9 LFKLLLIGDSGV--GKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 9 ~~ki~vvG~~~~--GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
..-++|+|-.|+ ||-+|++++....|.....+.-...++.-+++-......+.+.-.+--+++.-..-......-+++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 346789999999 999999999988887665554444555444433322222222222211121111111223456789
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
++||++...++..+..|+.--.-.. .+ -.+.+|||.|.....-+ +.+++.
T Consensus 84 mvfdlse~s~l~alqdwl~htdins-fd-illcignkvdrvphhla----------------------------hdeyrr 133 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDINS-FD-ILLCIGNKVDRVPHHLA----------------------------HDEYRR 133 (418)
T ss_pred EEEeccchhhhHHHHhhcccccccc-ch-hheecccccccccchhh----------------------------hhHHHH
Confidence 9999999999999999976422111 12 24567999998633211 011111
Q ss_pred hhhhhcCCCchhh---------------------hhhccchhHHHHHHHhCCceEEeeccC------------CCCHHHH
Q psy9621 167 NIDEHANEDPQVV---------------------NSWVCKHRGEAIAREYGVRFMETSAKA------------NINIEKA 213 (253)
Q Consensus 167 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~gi~~l 213 (253)
.+.+..++.+..+ ..........+||.++|+.+++.++.. ..||+.+
T Consensus 134 rl~kasdpsrdl~~di~dfgisetegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgveri 213 (418)
T KOG4273|consen 134 RLAKASDPSRDLMIDICDFGISETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERI 213 (418)
T ss_pred HHHhhcCcchhHhhhhhhccccccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHH
Confidence 1111111111100 111234456789999999999999832 3478888
Q ss_pred HHHHHHHHHh
Q psy9621 214 FIELATAIYD 223 (253)
Q Consensus 214 ~~~l~~~~~~ 223 (253)
|..|-..+-.
T Consensus 214 fgal~ahmwp 223 (418)
T KOG4273|consen 214 FGALNAHMWP 223 (418)
T ss_pred HHHhhhccCc
Confidence 8888765543
No 349
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.49 E-value=2.4e-07 Score=71.81 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=38.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCC-------CcccCccceeeEEEEEeeCCeEEEEEEEeCCC
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFN-------TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 67 (253)
..+++++|.+|+|||||+|++...... ....+..|.+.....+.+.. .+.+|||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 358999999999999999999874321 11122224455544444432 479999999
No 350
>KOG2655|consensus
Probab=98.48 E-value=3.8e-06 Score=70.13 Aligned_cols=117 Identities=18% Similarity=0.274 Sum_probs=73.0
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc---------ccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc---c
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT---------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH---T 73 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~ 73 (253)
....++++++|+.|.|||||+|.|+...+... ...++.+......+.-++-...+.++||||..+.. .
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 34568999999999999999999886543321 22345555555555556777889999999963220 0
Q ss_pred cc----------------------hhhhc--CccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccc
Q psy9621 74 IT----------------------TSYYR--GAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 74 ~~----------------------~~~~~--~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.| +..+. ..+++++.+..+.. ++..+. .....+. ..+.+|-|.-|.|..
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTL 171 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccC
Confidence 11 11122 46778887775543 222222 2222222 456778888899986
No 351
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.45 E-value=4e-07 Score=76.24 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=44.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (253)
.+++.|+|-||||||||||+|.+...... .+..|.+...+.+.+... +.++||||-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCc
Confidence 47899999999999999999998766333 334477777777766543 899999995
No 352
>PRK14974 cell division protein FtsY; Provisional
Probab=98.41 E-value=1.6e-06 Score=72.71 Aligned_cols=96 Identities=14% Similarity=0.055 Sum_probs=58.2
Q ss_pred EEEEEEeCCCcccccc-cc---hhh--hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc
Q psy9621 58 IKLQIWDTAGQERFHT-IT---TSY--YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER 131 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~-~~---~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 131 (253)
..+.++||+|...... +. ..+ ...+|..++|.|++....... ....+.... -+--++.||.|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~---~a~~f~~~~---~~~giIlTKlD~~---- 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE---QAREFNEAV---GIDGVILTKVDAD---- 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH---HHHHHHhcC---CCCEEEEeeecCC----
Confidence 4689999999864321 11 111 235788899999876532221 112222211 2456778999986
Q ss_pred cccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHH
Q psy9621 132 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIE 211 (253)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 211 (253)
...-....++...+.|+.+++ +|++++
T Consensus 293 ---------------------------------------------------~~~G~~ls~~~~~~~Pi~~i~--~Gq~v~ 319 (336)
T PRK14974 293 ---------------------------------------------------AKGGAALSIAYVIGKPILFLG--VGQGYD 319 (336)
T ss_pred ---------------------------------------------------CCccHHHHHHHHHCcCEEEEe--CCCChh
Confidence 122234455566789999988 799998
Q ss_pred HHHHH
Q psy9621 212 KAFIE 216 (253)
Q Consensus 212 ~l~~~ 216 (253)
++...
T Consensus 320 Dl~~~ 324 (336)
T PRK14974 320 DLIPF 324 (336)
T ss_pred hcccC
Confidence 87544
No 353
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.40 E-value=9.2e-07 Score=72.30 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=38.9
Q ss_pred EEEEEEEeCCCcccccccch-------hh-----hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeee
Q psy9621 57 KIKLQIWDTAGQERFHTITT-------SY-----YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~-------~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~ 124 (253)
.+.+.++||+|........- .. -..+|..++|+|++.. .+.+. ....+.+.. -+.-+|.||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV---GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC---CCCEEEEEcc
Confidence 46789999999865322210 11 1248899999999753 22322 223333222 2567888999
Q ss_pred ccc
Q psy9621 125 DTA 127 (253)
Q Consensus 125 D~~ 127 (253)
|..
T Consensus 228 De~ 230 (272)
T TIGR00064 228 DGT 230 (272)
T ss_pred CCC
Confidence 976
No 354
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.39 E-value=2e-06 Score=64.49 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=32.4
Q ss_pred hhcCccEEEEEEeCCChhh--HHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 78 YYRGAMGIMLVYDITNEKS--FDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.+..+|++++|+|+.++.. ...+.+++. . ...+.|+++|+||+|+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~-~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---K-EKPHKHLIFVLNKCDLV 52 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---h-ccCCCCEEEEEEchhcC
Confidence 4678999999999988742 222223322 2 23468999999999986
No 355
>KOG1547|consensus
Probab=98.38 E-value=1.8e-06 Score=67.49 Aligned_cols=66 Identities=26% Similarity=0.426 Sum_probs=46.2
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc---------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT---------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 71 (253)
....+||.|+|.+|.|||||+|.++..+.... +..|..+-...+++.-++-..++.++||||...+
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq 117 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ 117 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccc
Confidence 45678999999999999999999975443321 2234444444444544555678899999997654
No 356
>KOG1954|consensus
Probab=98.36 E-value=2.4e-06 Score=70.77 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=78.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCc---ccCccceeeEEEEEee------CCe---------------------
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT---FISTIGIDFKIKTVDL------KGK--------------------- 56 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~------~~~--------------------- 56 (253)
+...=|+++|.=.+||||+++.|+...++.. ..||. ++....+.- .+.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 3445699999999999999999998777632 22222 222222211 111
Q ss_pred ------------EEEEEEEeCCCcc-----------cccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccc
Q psy9621 57 ------------KIKLQIWDTAGQE-----------RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE 113 (253)
Q Consensus 57 ------------~~~~~l~Dt~G~~-----------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~ 113 (253)
--.+.++||||.- .|....++|...+|.+|++||....+--....+.+..+ .+.
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL---kG~ 210 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL---KGH 210 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh---hCC
Confidence 1158899999942 34555678899999999999976554333333444444 335
Q ss_pred ccceeEEeeeeccccccc
Q psy9621 114 DVEKMILGKTKDTAGQER 131 (253)
Q Consensus 114 ~~p~iiv~nK~D~~~~~~ 131 (253)
.-.+-||+||.|....+.
T Consensus 211 EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred cceeEEEeccccccCHHH
Confidence 567889999999986654
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.35 E-value=3.5e-06 Score=63.09 Aligned_cols=84 Identities=12% Similarity=0.033 Sum_probs=54.3
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 83 MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
|++++|+|+.++.+... .++.. ......+.|+++|+||+|+..
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~---------------------------------- 43 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVP---------------------------------- 43 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCC----------------------------------
Confidence 68899999988765442 23321 111225799999999999851
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
... + ......+.+..+..++.+||+++.|++++.+.+....
T Consensus 44 ------------~~~-----~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 44 ------------KEV-----L-RKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred ------------HHH-----H-HHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHHh
Confidence 110 0 0111222223356789999999999999999987654
No 358
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.32 E-value=2.6e-06 Score=64.87 Aligned_cols=91 Identities=12% Similarity=0.016 Sum_probs=59.5
Q ss_pred ccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621 73 TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI 152 (253)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (253)
......+.++|.+++|+|++.+..-.. ..+... . .+.|+++++||+|+..
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~----~-~~k~~ilVlNK~Dl~~------------------------ 60 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKI----L-GNKPRIIVLNKADLAD------------------------ 60 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhH----h-cCCCEEEEEehhhcCC------------------------
Confidence 334567889999999999987653221 112221 1 3579999999999851
Q ss_pred cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
... . ....++.+..+..++.+||+++.|++++...+...+.
T Consensus 61 ----------------------~~~-----~--~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 61 ----------------------PKK-----T--KKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred ----------------------hHH-----H--HHHHHHHHhcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 110 0 0011122223456899999999999999999988764
No 359
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.31 E-value=1.7e-06 Score=64.82 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=36.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCC
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 67 (253)
....+++++|.+|+|||||+|.+.+..... ...+ +.+.....+... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~--~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP--GTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCC--CcccceEEEEec---CCEEEEECCC
Confidence 356789999999999999999999765322 1111 222222223222 3589999998
No 360
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.30 E-value=4e-05 Score=56.52 Aligned_cols=56 Identities=29% Similarity=0.558 Sum_probs=39.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCC
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 66 (253)
..+||.+-|+||||||||+.++.+.--...+ .++ -+.+..+.-.++.+-|.+.|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~--kvg-Gf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY--KVG-GFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc--eee-eEEeeeeecCCeEeeeEEEEcc
Confidence 4689999999999999999998742222111 122 3445556667788888999987
No 361
>KOG0463|consensus
Probab=98.27 E-value=4.4e-06 Score=69.37 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=95.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCC------------------CcccCcccee-----eEEEEEeeC----------
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFN------------------TTFISTIGID-----FKIKTVDLK---------- 54 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~------------------~~~~~~~~~~-----~~~~~~~~~---------- 54 (253)
.+++|+|+|...+|||||+--|..+..+ ....+.+|.+ ..-..++-.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 3689999999999999999665432221 1122222222 221112111
Q ss_pred ----CeEEEEEEEeCCCcccccccchhhh--cCccEEEEEEeCCChhhHHHHHH-HHHHHHHhcccccceeEEeeeeccc
Q psy9621 55 ----GKKIKLQIWDTAGQERFHTITTSYY--RGAMGIMLVYDITNEKSFDNILK-WLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 55 ----~~~~~~~l~Dt~G~~~~~~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
+...-+.++|.+|++.|-...-.-+ .-.|...+++-++.. ...+.+ -+-.-+ .-.+|+++|.+|+|++
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLAL---aL~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLAL---ALHVPVFVVVTKIDMC 286 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhh---hhcCcEEEEEEeeccC
Confidence 1112478999999999865443322 346667777665432 122111 111111 2469999999999999
Q ss_pred cccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhc-cch----hHHHHHHHhCCceEEe
Q psy9621 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV-CKH----RGEAIAREYGVRFMET 202 (253)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~ 202 (253)
.+. .+.+..+++..+.+.-. .+. .+..+ +.+ .+..|..+.-+|+|.+
T Consensus 287 PAN--------------------------iLqEtmKll~rllkS~g-crK-~PvlVrs~DDVv~~A~NF~Ser~CPIFQv 338 (641)
T KOG0463|consen 287 PAN--------------------------ILQETMKLLTRLLKSPG-CRK-LPVLVRSMDDVVHAAVNFPSERVCPIFQV 338 (641)
T ss_pred cHH--------------------------HHHHHHHHHHHHhcCCC-ccc-CcEEEecccceEEeeccCccccccceEEe
Confidence 443 23333334443333210 000 00000 111 1234555566899999
Q ss_pred eccCCCCHHHHHHHH
Q psy9621 203 SAKANINIEKAFIEL 217 (253)
Q Consensus 203 Sa~~~~gi~~l~~~l 217 (253)
|-.+|.|++-|...|
T Consensus 339 SNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 339 SNVTGTNLPLLKMFL 353 (641)
T ss_pred ccccCCChHHHHHHH
Confidence 999999998655443
No 362
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.26 E-value=4e-06 Score=70.75 Aligned_cols=83 Identities=14% Similarity=0.013 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCC-CCcccCccceeeEEEEEeeCCe---------------EEEEEEEeCCCccc---
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAF-NTTFISTIGIDFKIKTVDLKGK---------------KIKLQIWDTAGQER--- 70 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~--- 70 (253)
+++.++|.|++|||||++.+.+... ....-|...++...-.+.+.+. ...+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999998765 3221121111222222333322 13578999999643
Q ss_pred -ccccc---hhhhcCccEEEEEEeCC
Q psy9621 71 -FHTIT---TSYYRGAMGIMLVYDIT 92 (253)
Q Consensus 71 -~~~~~---~~~~~~~d~~ilv~d~~ 92 (253)
..++. -..++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 22333 33468999999999974
No 363
>KOG0460|consensus
Probab=98.25 E-value=4.6e-06 Score=68.39 Aligned_cols=119 Identities=14% Similarity=0.079 Sum_probs=75.6
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhc----------CCCCCc----ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSD----------DAFNTT----FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~----------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 71 (253)
.-+..||.-||+-.=|||||..++.. .++.+. -...-|++...-.+.+.-....+--.|+|||..|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 34678999999999999999988852 111111 0123355666556666555566777899999988
Q ss_pred cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
..-.-.-..+.|++|+|+.++|..--+. ++-+-.-++. .-..++++.||.|+.
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQT-rEHlLLArQV--GV~~ivvfiNKvD~V 183 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQT-REHLLLARQV--GVKHIVVFINKVDLV 183 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcch-HHHHHHHHHc--CCceEEEEEeccccc
Confidence 5443334567899999999998542111 2111111121 124567779999987
No 364
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.24 E-value=2.6e-06 Score=82.86 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=69.6
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCcc------cCccceeeEEEEEeeCCeEEEEEEEeCCCcc--------cccccchh
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDDAFNTTF------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE--------RFHTITTS 77 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~ 77 (253)
.+|||++|+|||||+.+- +-.++-.. ...++-+.. ..+-+.+ .-.++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 589999999999999876 33333211 111111111 1121221 34589999942 11222333
Q ss_pred hh---------cCccEEEEEEeCCChhh---------HHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 78 YY---------RGAMGIMLVYDITNEKS---------FDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 78 ~~---------~~~d~~ilv~d~~~~~s---------~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
++ +..|++|+++|+.+... -..++..++++....+-.+|+.++.+|+|+.
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 32 46899999999875321 1345577777888777899999999999986
No 365
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.21 E-value=1.5e-05 Score=63.46 Aligned_cols=88 Identities=17% Similarity=0.046 Sum_probs=54.1
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcC--CCCCc---ccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc------
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDD--AFNTT---FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI------ 74 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------ 74 (253)
..+..-|.|+|++++|||+|+|++++. .|... ...|.|+-.....+.. +....+.++||+|.......
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhh
Confidence 345667999999999999999999987 55432 1223443333222211 24567999999997543221
Q ss_pred chhhhc--CccEEEEEEeCCCh
Q psy9621 75 TTSYYR--GAMGIMLVYDITNE 94 (253)
Q Consensus 75 ~~~~~~--~~d~~ilv~d~~~~ 94 (253)
....+. -++.+|+..+.+..
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 112222 37777777665543
No 366
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.18 E-value=2e-05 Score=67.99 Aligned_cols=113 Identities=16% Similarity=0.139 Sum_probs=62.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc------CCCC----Cccc-----------CccceeeEEEEEee-------------C
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD------DAFN----TTFI-----------STIGIDFKIKTVDL-------------K 54 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~------~~~~----~~~~-----------~~~~~~~~~~~~~~-------------~ 54 (253)
..-|+++|++||||||++.+|.. .+.. ..++ ...++.+....-.. .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45789999999999999988741 1110 0111 11222222110000 0
Q ss_pred CeEEEEEEEeCCCcccccc-cch---h--hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 55 GKKIKLQIWDTAGQERFHT-ITT---S--YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 55 ~~~~~~~l~Dt~G~~~~~~-~~~---~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
...+.+.++||+|...... +.. . -...++-++||+|++....-.... ..+.+ .--+.-+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~---~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKD---SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHh---ccCCcEEEEECccCC
Confidence 1246789999999865422 111 1 123577889999987553222222 22222 124677889999976
No 367
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.16 E-value=1.4e-06 Score=65.06 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDA 33 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~ 33 (253)
.++|+|++|||||||+|.|....
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999753
No 368
>PRK12288 GTPase RsgA; Reviewed
Probab=98.16 E-value=4.3e-06 Score=70.65 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=34.5
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCc-ccCc-c--c--eeeEEEEEeeCCeEEEEEEEeCCCccccc
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDDAFNTT-FIST-I--G--IDFKIKTVDLKGKKIKLQIWDTAGQERFH 72 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~~~~~~-~~~~-~--~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 72 (253)
++|+|.+|||||||+|+|+....... ..+. . | .+.....+.+.++ ..++||||..++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 78999999999999999996543211 1110 0 1 1112222233322 2489999986654
No 369
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.14 E-value=8.7e-06 Score=66.92 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=60.1
Q ss_pred chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
....+..+|++++|+|+..+.+... .++.... .+.|+++|+||+|+.
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~--------------------------- 61 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLA--------------------------- 61 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccC---------------------------
Confidence 4556789999999999987654322 1112211 357999999999985
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
+... .....+.+ +..+.+++.+||+++.|++++.+.+...+...
T Consensus 62 -------------------~~~~------~~~~~~~~-~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 62 -------------------DPAV------TKQWLKYF-EEKGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred -------------------CHHH------HHHHHHHH-HHcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 1110 00111111 22356789999999999999999988877553
No 370
>PRK12289 GTPase RsgA; Reviewed
Probab=98.13 E-value=5.1e-06 Score=70.26 Aligned_cols=56 Identities=25% Similarity=0.310 Sum_probs=33.6
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCc-ccCc---cc--eeeEEEEEeeCCeEEEEEEEeCCCccc
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDDAFNTT-FIST---IG--IDFKIKTVDLKGKKIKLQIWDTAGQER 70 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~~~~~~-~~~~---~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 70 (253)
++|+|++|||||||+|+|+....... ..+. -| ++.....+.+..+ ..++||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 79999999999999999986432211 0110 00 1222233334322 26899999754
No 371
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.12 E-value=7.6e-06 Score=60.23 Aligned_cols=48 Identities=10% Similarity=0.200 Sum_probs=35.1
Q ss_pred hhhhcCccEEEEEEeCCChhhHH--HHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 76 TSYYRGAMGIMLVYDITNEKSFD--NILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
...+..+|++++|+|+.++.+.. .+.+|+... ..+.|+++++||+|+.
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~ 55 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcC
Confidence 45678999999999998876533 333443322 2478999999999985
No 372
>PRK13796 GTPase YqeH; Provisional
Probab=98.11 E-value=5.1e-06 Score=70.89 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCC----CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFN----TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (253)
.++.|+|.+|||||||+|+|+..... ....+..|++.....+.+.++ ..++||||-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 47999999999999999999854311 111222344444444444332 4799999963
No 373
>KOG1487|consensus
Probab=98.10 E-value=8.1e-06 Score=64.56 Aligned_cols=200 Identities=19% Similarity=0.180 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCcc-ceeeEEEEEeeCCeEEEEEEEeCCCcccc----cc---cchhhhcC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTI-GIDFKIKTVDLKGKKIKLQIWDTAGQERF----HT---ITTSYYRG 81 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~---~~~~~~~~ 81 (253)
-+|-++|-|.+|||||+..+.+. +.+. +.. +.+.....-..+.+..++++.|.||..+- .+ ..-...+-
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~-~s~v--asyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGT-FSEV--AAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCC-CCcc--ccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence 48999999999999999999863 2211 111 11111111112234467999999996432 11 12234578
Q ss_pred ccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeecccccccc------ccc---cccccccceeeEEEEe
Q psy9621 82 AMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERF------HTI---TTSYYRGAMGIMLVYD 151 (253)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~------~~~---~~~~~~~~~~~~~~~~ 151 (253)
|+.+++|.|+..|-+-..+- +.++-+--...+..|-+. ..|-|..+-.-. ..+ ...|...++..-+.+|
T Consensus 137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~-~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~D 215 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIG-TKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFD 215 (358)
T ss_pred ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCcc-ccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecC
Confidence 99999999998886544432 222222111123333333 333333322111 111 1235556667777788
Q ss_pred ccCccchhhHHH---HHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 152 ITNEKSFDNILK---WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 152 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.|.++...-+.. +...+..... +..-..+++--.+. ...+.+||.+++|+|++++.+...+.
T Consensus 216 aT~DdLIdvVegnr~yVp~iyvLNk---------IdsISiEELdii~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 216 ATADDLIDVVEGNRIYVPCIYVLNK---------IDSISIEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred cchhhhhhhhccCceeeeeeeeecc---------cceeeeeccceeeeccceeecccccccchHHHHHHHhhcch
Confidence 777655554421 1111111110 11111111111122 24589999999999999999998664
No 374
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.08 E-value=8.3e-06 Score=69.51 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=36.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCC----CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFN----TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (253)
.++.|+|.+|||||||+|+++..... ....+..|.+.....+.+.. .+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence 58999999999999999999874321 11122223333333333321 25799999964
No 375
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.07 E-value=8.2e-06 Score=65.78 Aligned_cols=58 Identities=22% Similarity=0.293 Sum_probs=34.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCc--ccC----ccceeeEEEEEeeCCeEEEEEEEeCCCccccc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTT--FIS----TIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH 72 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 72 (253)
.++|+|++|||||||+|++........ ... ....+.....+.+.+ -.++||||...+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~ 185 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG 185 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence 689999999999999999986432211 000 000122222233322 3799999976543
No 376
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=1.4e-05 Score=68.89 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-.++|+|++|+||||++.+|..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999987754
No 377
>KOG3929|consensus
Probab=98.06 E-value=1.9e-06 Score=67.96 Aligned_cols=119 Identities=18% Similarity=0.309 Sum_probs=75.1
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEE-EEEEeCCCcccccccchhhhcC---
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIK-LQIWDTAGQERFHTITTSYYRG--- 81 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~Dt~G~~~~~~~~~~~~~~--- 81 (253)
......|++.|..+ |||+|++++.+.-... .|+...+|..-...-.++... .++|+.+|......+.+..++.
T Consensus 42 ~~~E~~I~~~Gn~~--~tt~I~~~FdR~e~~~-~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l 118 (363)
T KOG3929|consen 42 EKFEFFIGSKGNGG--KTTIILRCFDRDEPPK-PPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL 118 (363)
T ss_pred ccceeEEEEecCCc--eeEeehhhcCcccCCC-CCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence 34566888988776 5999999987654444 677777776443322222222 4799999986655554443332
Q ss_pred -ccEEEEEEeCCChhh-HHHHHHHHHHHHHhc-------------------------------------ccccceeEEee
Q psy9621 82 -AMGIMLVYDITNEKS-FDNILKWLRNIDEHA-------------------------------------NEDVEKMILGK 122 (253)
Q Consensus 82 -~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~-------------------------------------~~~~p~iiv~n 122 (253)
.-.+|++.|+++++. |..+...++.++++. .-.+|++||+.
T Consensus 119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs 198 (363)
T KOG3929|consen 119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS 198 (363)
T ss_pred hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence 235788899999865 334433333332111 12699999999
Q ss_pred eeccc
Q psy9621 123 TKDTA 127 (253)
Q Consensus 123 K~D~~ 127 (253)
|.|..
T Consensus 199 KYDvF 203 (363)
T KOG3929|consen 199 KYDVF 203 (363)
T ss_pred chhhh
Confidence 99986
No 378
>KOG1491|consensus
Probab=98.05 E-value=2.1e-05 Score=64.63 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=56.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCC---------------eEEEEEEEeCCCc----
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKG---------------KKIKLQIWDTAGQ---- 68 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~Dt~G~---- 68 (253)
..+++.+||.|+||||||+|.+.+....+.--|-..++...-.+.+.+ ....+.++|++|.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 467999999999999999999998665544333322333222333221 1346899998874
Q ss_pred ccccccchhh---hcCccEEEEEEeCC
Q psy9621 69 ERFHTITTSY---YRGAMGIMLVYDIT 92 (253)
Q Consensus 69 ~~~~~~~~~~---~~~~d~~ilv~d~~ 92 (253)
+.-.++-..| ++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 3445555555 47899999888754
No 379
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=5.4e-05 Score=66.18 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=67.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
+.+=++|+|+||+|||||+..+........ +.--..+.++ +.++...+.+..+|. ....+. ...+-+|.+++
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~t----i~~i~GPiTv-vsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlL 139 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQT----IDEIRGPITV-VSGKTRRITFLECPS--DLHQMI-DVAKIADLVLL 139 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhh----hhccCCceEE-eecceeEEEEEeChH--HHHHHH-hHHHhhheeEE
Confidence 456678999999999999998875322211 1111122333 456777899999993 222222 24577999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
++|.+-...++.+. ++.-+..| +.| ++-|+++.|+.
T Consensus 140 lIdgnfGfEMETmE-FLnil~~H---GmPrvlgV~ThlDlf 176 (1077)
T COG5192 140 LIDGNFGFEMETME-FLNILISH---GMPRVLGVVTHLDLF 176 (1077)
T ss_pred EeccccCceehHHH-HHHHHhhc---CCCceEEEEeecccc
Confidence 99987654444432 33333333 455 56688999987
No 380
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.04 E-value=2.6e-05 Score=60.63 Aligned_cols=64 Identities=16% Similarity=0.052 Sum_probs=35.3
Q ss_pred EEEEEEeCCCcccccccc----hhh--hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 58 IKLQIWDTAGQERFHTIT----TSY--YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
..+.++||+|........ ..+ ....+-+++|.+++.... .+. ....+.+.. + +--++.+|.|..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~-~~~~~~~~~--~-~~~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLE-QALAFYEAF--G-IDGLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHH-HHHHHHHHS--S-TCEEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHH-HHHHHhhcc--c-CceEEEEeecCC
Confidence 568999999986542211 111 125778888888876532 222 112222221 2 345668999976
No 381
>KOG0447|consensus
Probab=98.03 E-value=5.2e-05 Score=66.02 Aligned_cols=162 Identities=19% Similarity=0.256 Sum_probs=94.3
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-------------------------------ccCc-----------
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-------------------------------FIST----------- 41 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-------------------------------~~~~----------- 41 (253)
.+++...+|+|+|+..+||||.+..+......+- ++-|
T Consensus 303 nt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e 382 (980)
T KOG0447|consen 303 NTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHE 382 (980)
T ss_pred cccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHH
Confidence 3678889999999999999999987753222110 0000
Q ss_pred ----------cceeeEEEEE--eeCCe-EEEEEEEeCCCcc-------------cccccchhhhcCccEEEEEEeCCChh
Q psy9621 42 ----------IGIDFKIKTV--DLKGK-KIKLQIWDTAGQE-------------RFHTITTSYYRGAMGIMLVYDITNEK 95 (253)
Q Consensus 42 ----------~~~~~~~~~~--~~~~~-~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~~~ 95 (253)
-|.+..+.++ ++.+. -....+.|.||-. ....+...++.+++++|+|+.-.+-+
T Consensus 383 ~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD 462 (980)
T KOG0447|consen 383 IELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD 462 (980)
T ss_pred HHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc
Confidence 0222222222 22221 2356789999842 23445567899999999998533322
Q ss_pred h-HHHHHHHHHHHHHhcccccceeEEeeeecccccccc--ccccc-----cccccceeeEEEEe--ccCccchhhHHHHH
Q psy9621 96 S-FDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERF--HTITT-----SYYRGAMGIMLVYD--ITNEKSFDNILKWL 165 (253)
Q Consensus 96 s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 165 (253)
. -..+......+ -..+.-.|+|++|.|++...-+ .-+.. .|+-.+.|.+.+.. -.+.++.++++++-
T Consensus 463 AERSnVTDLVsq~---DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~YE 539 (980)
T KOG0447|consen 463 AERSIVTDLVSQM---DPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREYE 539 (980)
T ss_pred hhhhhHHHHHHhc---CCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHHH
Confidence 1 11122333332 2356789999999999866322 22222 24555555554433 33567888887766
Q ss_pred Hhh
Q psy9621 166 RNI 168 (253)
Q Consensus 166 ~~~ 168 (253)
+++
T Consensus 540 E~F 542 (980)
T KOG0447|consen 540 EEF 542 (980)
T ss_pred HHH
Confidence 544
No 382
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.03 E-value=2.7e-05 Score=59.30 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=38.4
Q ss_pred EEEEEEEeCCCccccc----ccchhhh--cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQERFH----TITTSYY--RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~----~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
...+.++|++|...+. .....+. ...+.+++|+|...... ...+...+.+.. + ..-++.||.|..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~ 152 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGD 152 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCC
Confidence 3457889999975321 1111122 24899999999865432 223444444333 2 366777999976
No 383
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.03 E-value=1.8e-05 Score=59.42 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=36.9
Q ss_pred EEEEEEEeCCCcccccccchhh--------hcCccEEEEEEeCCChhhHH-HHHHHHHHHHHhcccccceeEEeeeecc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSY--------YRGAMGIMLVYDITNEKSFD-NILKWLRNIDEHANEDVEKMILGKTKDT 126 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~~~~p~iiv~nK~D~ 126 (253)
.....++||+|-.+-......+ .-..+.++.++|+.+-.... ....+..++ ...-+|+.||.|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi------~~ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQI------AFADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHH------HHCCEEEEecccC
Confidence 3466889999976443333221 23478899999976543321 222233333 2344678899995
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.02 E-value=1.9e-05 Score=67.44 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=57.1
Q ss_pred cCcc-EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 80 RGAM-GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 80 ~~~d-~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
...+ .+++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+.....
T Consensus 67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~~~--------------------------- 113 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPKSV--------------------------- 113 (365)
T ss_pred cccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCCcc---------------------------
Confidence 4445 888899987643 23444555444 3689999999999961100
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHH
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
... ........+++.+++ .++.+||+++.|++++++.|.+.
T Consensus 114 ----------------~~~-----~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 114 ----------------KKN-----KVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred ----------------CHH-----HHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 000 111233344556665 68999999999999999998664
No 385
>KOG0099|consensus
Probab=98.01 E-value=2.3e-05 Score=62.09 Aligned_cols=73 Identities=11% Similarity=0.236 Sum_probs=51.2
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhh-------HHHHHH---HHHHHHHhc-ccccceeEEeeeec
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS-------FDNILK---WLRNIDEHA-NEDVEKMILGKTKD 125 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s-------~~~~~~---~~~~i~~~~-~~~~p~iiv~nK~D 125 (253)
.+.++++|.+|+..-+.-|-..+.+.-++|||...++..- -..+++ ++..+-+.. -..+.+|+++||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 4679999999998888888889999999999998765321 122222 222221111 14689999999999
Q ss_pred cccc
Q psy9621 126 TAGQ 129 (253)
Q Consensus 126 ~~~~ 129 (253)
+...
T Consensus 281 llae 284 (379)
T KOG0099|consen 281 LLAE 284 (379)
T ss_pred HHHH
Confidence 9744
No 386
>PRK01889 GTPase RsgA; Reviewed
Probab=98.01 E-value=3.2e-05 Score=65.78 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=34.9
Q ss_pred hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
..++|.+++|+++..+-....+.+++..+.. .++|.+||+||+|+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~ 155 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLC 155 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcC
Confidence 5688999999999754455556666655544 468889999999996
No 387
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=4.1e-05 Score=65.03 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-.++|+|++||||||++.+|..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999864
No 388
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.00 E-value=0.00015 Score=61.62 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
+-.|=|.||||..+|||||+.||..
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHH
Confidence 4467799999999999999999964
No 389
>KOG1534|consensus
Probab=97.96 E-value=1.6e-05 Score=61.08 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=23.3
Q ss_pred HhC-CceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 194 EYG-VRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 194 ~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
.++ +.+.+......++|+.++..|=..+.-.
T Consensus 222 d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~ 253 (273)
T KOG1534|consen 222 DYSMVNFLPLDSSDEESINIILSYIDDAIQYG 253 (273)
T ss_pred cccceeeeecCCCCHHHHHHHHHHHHHHHHhc
Confidence 344 5888888888889999888876666543
No 390
>KOG0448|consensus
Probab=97.95 E-value=0.00015 Score=64.72 Aligned_cols=65 Identities=18% Similarity=0.331 Sum_probs=42.0
Q ss_pred EEEEEeCCCcc---cccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 59 KLQIWDTAGQE---RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 59 ~~~l~Dt~G~~---~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.+.++|.||.. +...-...++..+|++|+|.++.+..+... ..++..+.+ ....+.|+-||.|..
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~KpniFIlnnkwDas 274 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKPNIFILNNKWDAS 274 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCCcEEEEechhhhh
Confidence 46789999964 334444567889999999998876654443 234443333 234456666777976
No 391
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.94 E-value=6.7e-05 Score=62.03 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=68.9
Q ss_pred chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
....+..+|++|+|+|+..+.+... .++... . .+.|+++|.||+|+.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~---~-~~kp~iiVlNK~DL~--------------------------- 64 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKI---I-GNKPRLLILNKSDLA--------------------------- 64 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHH---h-CCCCEEEEEEchhcC---------------------------
Confidence 4556789999999999977654322 122222 1 268999999999985
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC---CCC
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPL 231 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~---~~~ 231 (253)
+.. ..... .+..++.+.+++.+||+++.|++++.+.+...+....... ...
T Consensus 65 -------------------~~~------~~~~~-~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~ 118 (287)
T PRK09563 65 -------------------DPE------VTKKW-IEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMR 118 (287)
T ss_pred -------------------CHH------HHHHH-HHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 110 00011 1111233567899999999999999999888775543211 112
Q ss_pred CCCCeEeecCCCCCC
Q psy9621 232 EAPDRVTIDKKPDRG 246 (253)
Q Consensus 232 ~~~~~~~~~~~~~~~ 246 (253)
....++-+-..++.|
T Consensus 119 ~~~~~~~~~G~pnvG 133 (287)
T PRK09563 119 PRAIRAMIIGIPNVG 133 (287)
T ss_pred cCceEEEEECCCCCC
Confidence 223455555555555
No 392
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.92 E-value=9.3e-05 Score=56.07 Aligned_cols=52 Identities=27% Similarity=0.477 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 65 (253)
||++-|++|+|||||++++....-... .+.-| +.+..+.-++..+.+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC-GGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC-Cccce--EEeecccCCCceEEEEEEEC
Confidence 689999999999999999874321111 11112 44444445556666777776
No 393
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.91 E-value=4.5e-05 Score=66.15 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=38.1
Q ss_pred EEEEEEEeCCCcccccc-cchh-----hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQERFHT-ITTS-----YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~-~~~~-----~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.+.+.++||+|...... +... ....++.+++|+|.+... ....+...+.... + ..-+|.||.|..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCc
Confidence 35689999999754322 1111 123578889999987542 3333334443322 2 346778999964
No 394
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=0.00015 Score=63.92 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHhh
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~ 30 (253)
.-.|+|+|++|+||||++.+|.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999998875
No 395
>PRK13695 putative NTPase; Provisional
Probab=97.89 E-value=0.00035 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.706 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
+||++.|.+|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998653
No 396
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.89 E-value=2.8e-05 Score=64.25 Aligned_cols=60 Identities=30% Similarity=0.308 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcc-cC-c--cc--eeeEEEEEeeCCeEEEEEEEeCCCccccc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTF-IS-T--IG--IDFKIKTVDLKGKKIKLQIWDTAGQERFH 72 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~-~~-~--~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 72 (253)
-.++++|++|+|||||+|.+++....... .+ . .| .+.....+.+... ..++||||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46899999999999999999875433211 10 0 11 1222222333221 3689999986543
No 397
>KOG0466|consensus
Probab=97.86 E-value=7.8e-06 Score=66.12 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=93.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCC---CCCccc--CccceeeEEEEE---------------------------eeC
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDA---FNTTFI--STIGIDFKIKTV---------------------------DLK 54 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~---~~~~~~--~~~~~~~~~~~~---------------------------~~~ 54 (253)
+-++||.-+|+.--||||++.++.+-+ |..+.. -|+-..|.+..+ +..
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 568999999999999999998886422 111000 011001111000 000
Q ss_pred ---C---eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCC----hhhHHHHHHHHHHHHHhcccccceeEEeeee
Q psy9621 55 ---G---KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITN----EKSFDNILKWLRNIDEHANEDVEKMILGKTK 124 (253)
Q Consensus 55 ---~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~ 124 (253)
+ -...+.+.|+||++-.-...-.-..-.|++++++..+. |.+-+.+.. -++- .-..++|+-||+
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM----~LkhiiilQNKi 189 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIM----KLKHIIILQNKI 189 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHh----hhceEEEEechh
Confidence 0 01357789999997553322222223466666665553 233333221 1111 235788999999
Q ss_pred ccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEE
Q psy9621 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFME 201 (253)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 201 (253)
|+...+.+ . -..+....|.+.- +.|+++
T Consensus 190 Dli~e~~A--------------------------------------------~-----eq~e~I~kFi~~t~ae~aPiiP 220 (466)
T KOG0466|consen 190 DLIKESQA--------------------------------------------L-----EQHEQIQKFIQGTVAEGAPIIP 220 (466)
T ss_pred hhhhHHHH--------------------------------------------H-----HHHHHHHHHHhccccCCCceee
Confidence 99732211 0 1223334444443 469999
Q ss_pred eeccCCCCHHHHHHHHHHHHHhc
Q psy9621 202 TSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 202 ~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
+||.-..|++-+.+.|.+.+.--
T Consensus 221 isAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 221 ISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred ehhhhccChHHHHHHHHhcCCCC
Confidence 99999999999999999988653
No 398
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.86 E-value=0.00018 Score=62.66 Aligned_cols=113 Identities=24% Similarity=0.239 Sum_probs=60.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhc----CCCC------CcccCc-----------cceeeEEEE--Eee---------CC
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSD----DAFN------TTFIST-----------IGIDFKIKT--VDL---------KG 55 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~----~~~~------~~~~~~-----------~~~~~~~~~--~~~---------~~ 55 (253)
....|+++|++|+||||++..+.. .... ..+++. .++.+.... ... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 456899999999999999987742 1000 011111 111211110 000 00
Q ss_pred eEEEEEEEeCCCcccccccc------hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccc-ceeEEeeeeccc
Q psy9621 56 KKIKLQIWDTAGQERFHTIT------TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDV-EKMILGKTKDTA 127 (253)
Q Consensus 56 ~~~~~~l~Dt~G~~~~~~~~------~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~-p~iiv~nK~D~~ 127 (253)
....+.++||+|+....... ......+|.+++|+|.+... + .......+.. .+ ..-+|.||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~-av~~a~~F~~----~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--Q-AKNQAKAFHE----AVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--H-HHHHHHHHHh----cCCCCEEEEecccCC
Confidence 12368999999986542111 11234678899999987642 1 1222222222 22 345778999975
No 399
>PRK00098 GTPase RsgA; Reviewed
Probab=97.83 E-value=4e-05 Score=63.70 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDA 33 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~ 33 (253)
.++|+|++|||||||+|.+.+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999998654
No 400
>KOG1424|consensus
Probab=97.81 E-value=2.3e-05 Score=67.69 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=46.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (253)
.+.|.+||-|||||||+||.|.+.+.... ..|.|-+.+.+++.+. -.+.+.|+||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls---~~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLS---PSVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcC---CCceecCCCCcc
Confidence 58999999999999999999998766544 5677777777777655 347899999963
No 401
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=4.5e-05 Score=72.92 Aligned_cols=115 Identities=19% Similarity=0.197 Sum_probs=67.4
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCccc-CccceeeE-EEEEeeCCeEEEEEEEeCCCcccc--------cccchh----
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFI-STIGIDFK-IKTVDLKGKKIKLQIWDTAGQERF--------HTITTS---- 77 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~---- 77 (253)
-+|||++|+||||++.. .+..|+-... ...+..-. +..++.-. .-.-.++||.|...- ...|..
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf-~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWF-TDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCccc-ccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 37999999999999853 3333332100 00000000 11121111 123678899985211 112222
Q ss_pred -----hhcCccEEEEEEeCCChhh---------HHHHHHHHHHHHHhcccccceeEEeeeecccc
Q psy9621 78 -----YYRGAMGIMLVYDITNEKS---------FDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128 (253)
Q Consensus 78 -----~~~~~d~~ilv~d~~~~~s---------~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 128 (253)
..+..|++|+.+|+.+.-+ ...++.-++++....+-.+|+++++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 2467899999999875321 22244567777777778999999999999973
No 402
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00035 Score=59.54 Aligned_cols=21 Identities=43% Similarity=0.689 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~ 30 (253)
.+|+|+|++||||||++.+|.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 579999999999999999885
No 403
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.76 E-value=2.6e-05 Score=63.62 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-.+++|++|||||||+|+|..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 578999999999999999985
No 404
>PRK10867 signal recognition particle protein; Provisional
Probab=97.75 E-value=0.00011 Score=63.85 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=36.3
Q ss_pred EEEEEEEeCCCcccccc-cchh---h--hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQERFHT-ITTS---Y--YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~-~~~~---~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.+.+.++||+|...... +... + .-.++.+++|+|..... .+......+.... + ..-+|.||.|..
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCc
Confidence 35689999999754321 1111 1 12567789999986542 2223333333221 2 345677999964
No 405
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.75 E-value=7.9e-05 Score=64.35 Aligned_cols=75 Identities=11% Similarity=0.173 Sum_probs=55.1
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh----------hHHHHHHHHHHHHHh-cccccceeEEeeee
Q psy9621 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK----------SFDNILKWLRNIDEH-ANEDVEKMILGKTK 124 (253)
Q Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~ 124 (253)
....+.++|++|+...+.-|-.++.+++++|||+++++-+ .+......+..+... .-.+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 4567999999999888888999999999999999987532 133333444444332 22579999999999
Q ss_pred cccccc
Q psy9621 125 DTAGQE 130 (253)
Q Consensus 125 D~~~~~ 130 (253)
|+....
T Consensus 314 D~f~~K 319 (389)
T PF00503_consen 314 DLFEEK 319 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997553
No 406
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.74 E-value=0.00027 Score=57.83 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=66.8
Q ss_pred cchhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621 74 ITTSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI 152 (253)
Q Consensus 74 ~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (253)
+.+--..+.|-.|+++.+.+|+ +...+.+++-.... .++..+|++||+|+.
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~------------------------- 123 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLL------------------------- 123 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccC-------------------------
Confidence 3344455678888888888876 45555566555444 578888899999997
Q ss_pred cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
...+ ....+...+...+|++++.+|++++.|++++...+...
T Consensus 124 ---------------------~~~~-----~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 124 ---------------------DDEE-----AAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ---------------------cchH-----HHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCC
Confidence 2222 11144566777889999999999999999998877654
No 407
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=9.9e-05 Score=63.38 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-++|+|++||||||++.+|..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998863
No 408
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.70 E-value=0.0003 Score=61.20 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHhh
Q psy9621 11 KLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~ 30 (253)
.++|+|++||||||++.+|.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999887764
No 409
>KOG1533|consensus
Probab=97.70 E-value=4.3e-05 Score=59.71 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=39.4
Q ss_pred EEEEEEeCCCcccccc----cch--hhhcCccEEEEEEeC------CChhhHHHHHHHHHHHHHhcccccceeEEeeeec
Q psy9621 58 IKLQIWDTAGQERFHT----ITT--SYYRGAMGIMLVYDI------TNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~----~~~--~~~~~~d~~ilv~d~------~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D 125 (253)
-...++|+|||-++.. ++. .++..-+.-+.++++ ++|..|... .+..+.....-+.|.+-+++|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~--lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS--LLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH--HHHHHHHHHhhcccchhhhhHhH
Confidence 4578999999865421 111 223334444444443 456665553 22333333334789999999999
Q ss_pred cc
Q psy9621 126 TA 127 (253)
Q Consensus 126 ~~ 127 (253)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 97
No 410
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.69 E-value=0.0001 Score=64.64 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~ 30 (253)
--++|+|++||||||++.+|.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred cEEEEECCCCccHHHHHHHHH
Confidence 358999999999999998876
No 411
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.67 E-value=0.00033 Score=59.47 Aligned_cols=111 Identities=16% Similarity=0.281 Sum_probs=59.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCcc-----------------------ceeeEEEEEee---------CCe
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTI-----------------------GIDFKIKTVDL---------KGK 56 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~~---------~~~ 56 (253)
.-.|++|||+||||||-+.+|-....-..-.+.+ ++.+. .+.- ...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~l~ 280 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEALR 280 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHHhh
Confidence 5579999999999999887764321100001111 11111 1100 122
Q ss_pred EEEEEEEeCCCcccccccc----hhhhcC--ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQERFHTIT----TSYYRG--AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~----~~~~~~--~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
+..+.++||.|+..+.... ..++.. ..-.-+|++++.. ...+...++.+.. -++-- ++.+|.|-+
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~---~~i~~-~I~TKlDET 351 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL---FPIDG-LIFTKLDET 351 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc---CCcce-eEEEccccc
Confidence 4579999999997765443 223332 2334556677654 3445555444422 23333 456899976
No 412
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=7.3e-05 Score=63.28 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHhh
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~ 30 (253)
.-.++++|++|+||||++.++.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4468999999999999998875
No 413
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00031 Score=64.76 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-|+|+|++||||||.+.++..
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 589999999999999988763
No 414
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.57 E-value=0.00029 Score=57.47 Aligned_cols=111 Identities=21% Similarity=0.247 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCC---------C------------cccCccceeeEEEEEee-----------CCeE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFN---------T------------TFISTIGIDFKIKTVDL-----------KGKK 57 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~---------~------------~~~~~~~~~~~~~~~~~-----------~~~~ 57 (253)
-+++++|++|+||||++..+...... . .+....++++... ... ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 58999999999999999877432100 0 0111112221110 000 1124
Q ss_pred EEEEEEeCCCccccccc-c---hhhh--cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 58 IKLQIWDTAGQERFHTI-T---TSYY--RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~~-~---~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
..+.++||+|....... . ..++ -..+-.++|+|++... ..+..++..+.. --+--++.+|.|..
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet 224 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDET 224 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCC
Confidence 57899999998643211 1 1122 2456688899976431 222233333322 23455777999976
No 415
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.55 E-value=0.00035 Score=48.36 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=51.1
Q ss_pred EEEEc-CCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621 12 LLLIG-DSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD 90 (253)
Q Consensus 12 i~vvG-~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 90 (253)
|+|.| ..|+||||+...+...-.. .-.+..-++.. ....+.++|+|+.... .....+..+|.+|++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~d--------~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDLD--------PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeCC--------CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56777 5689999998776532111 11122222211 1156899999986432 23367788999999988
Q ss_pred CCChhhHHHHHHHHH
Q psy9621 91 ITNEKSFDNILKWLR 105 (253)
Q Consensus 91 ~~~~~s~~~~~~~~~ 105 (253)
.+ ..++..+.++++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 64 666777766665
No 416
>KOG2485|consensus
Probab=97.51 E-value=0.00021 Score=58.25 Aligned_cols=60 Identities=13% Similarity=0.326 Sum_probs=37.7
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCC------CcccCccceeeEEEE-EeeCCeEEEEEEEeCCCc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFN------TTFISTIGIDFKIKT-VDLKGKKIKLQIWDTAGQ 68 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~ 68 (253)
....+++.|+|.||+|||||+|.+...+.- ....| |++..... +.+..+ ..+.++||||-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~p--GVT~~V~~~iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEP--GVTRRVSERIRISHR-PPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCC--CceeeehhheEeccC-CceEEecCCCc
Confidence 456789999999999999999987642221 11122 22332222 333322 34899999995
No 417
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.001 Score=57.14 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=59.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCC--------C------Cccc-----------CccceeeEEEEEe-------eCCe
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAF--------N------TTFI-----------STIGIDFKIKTVD-------LKGK 56 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~--------~------~~~~-----------~~~~~~~~~~~~~-------~~~~ 56 (253)
.-.|+++|++||||||.+.++..... . ..++ ...++.+...... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 35799999999999999988752110 0 0000 1112222111000 0113
Q ss_pred EEEEEEEeCCCccccccc----chhhhcC--cc-EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQERFHTI----TTSYYRG--AM-GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~----~~~~~~~--~d-~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
...+.++||+|....... ...++.. .+ -.++|+|++.. ...+...+..+. .--+--++.+|.|..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~----~~~~~~~I~TKlDet 325 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFS----PFSYKTVIFTKLDET 325 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhc----CCCCCEEEEEeccCC
Confidence 467899999998653221 1122221 23 57888898865 233333333321 112456778999976
No 418
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.50 E-value=0.00061 Score=50.52 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=35.8
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeec
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D 125 (253)
...+.++||+|.... ...++..+|-+|++...+--+.+.-+.- .. ....-+++.||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~------~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GI------MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hH------hhhcCEEEEeCCC
Confidence 457899999986422 2348899999999876652222222111 11 2345568889987
No 419
>KOG0780|consensus
Probab=97.48 E-value=0.0002 Score=60.04 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc----CCCC------CcccC-----------ccceeeEEEEEe-------------eCC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD----DAFN------TTFIS-----------TIGIDFKIKTVD-------------LKG 55 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~----~~~~------~~~~~-----------~~~~~~~~~~~~-------------~~~ 55 (253)
--|.++|..|+||||.+-+|.. .-+. ..++. ..++.++...-. +..
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk 181 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK 181 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh
Confidence 3588999999999999987742 1110 01110 112222221110 123
Q ss_pred eEEEEEEEeCCCcccccccchh------hhcCccEEEEEEeCCChhhHHHHHHHHHH
Q psy9621 56 KKIKLQIWDTAGQERFHTITTS------YYRGAMGIMLVYDITNEKSFDNILKWLRN 106 (253)
Q Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~ 106 (253)
.+..+.|.||+|++......-. -.-.+|-+|+|.|++-...-+...+.+.+
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 3578999999998654322111 12468999999999987665554443333
No 420
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.47 E-value=0.0004 Score=41.92 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=31.1
Q ss_pred cCccEEEEEEeCCChh--hHHHHHHHHHHHHHhcccccceeEEeeeec
Q psy9621 80 RGAMGIMLVYDITNEK--SFDNILKWLRNIDEHANEDVEKMILGKTKD 125 (253)
Q Consensus 80 ~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D 125 (253)
.-.+++++++|++..- +.+.....++++...+ .+.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 3567899999998754 4666678888888887 6899999999998
No 421
>KOG3859|consensus
Probab=97.46 E-value=0.00027 Score=56.66 Aligned_cols=64 Identities=22% Similarity=0.431 Sum_probs=45.3
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCccc----CccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFI----STIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (253)
.+...+||+-||.+|.|||||+..|++..+..... |.+........+.-.+-..++.+.||.|.
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 45678999999999999999999999988765533 23332222222222344577899999985
No 422
>KOG0084|consensus
Probab=97.46 E-value=0.0001 Score=55.99 Aligned_cols=51 Identities=63% Similarity=1.116 Sum_probs=48.6
Q ss_pred ccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCC
Q psy9621 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 175 (253)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (253)
|.++|+..+.+...||+.+++++++||++..++|+.+-.|+.++.++..++
T Consensus 64 DTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~ 114 (205)
T KOG0084|consen 64 DTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN 114 (205)
T ss_pred eccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC
Confidence 999999999999999999999999999999999999999999999998655
No 423
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.44 E-value=0.00045 Score=50.65 Aligned_cols=107 Identities=13% Similarity=0.155 Sum_probs=64.2
Q ss_pred EEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCC
Q psy9621 13 LLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT 92 (253)
Q Consensus 13 ~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 92 (253)
+.-|..|+|||++...+...-. ....++.-++.... ...-.+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~~---~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADLG---LANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCCC---CCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 4567899999999876643211 11111111221110 00111668999999753 333456789999999998865
Q ss_pred ChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 93 NEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 93 ~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
..++......++.+.... ...++.++.|+.+..
T Consensus 78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 555666555555554433 456778999998753
No 424
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.39 E-value=0.00079 Score=48.96 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCC
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDA 33 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~ 33 (253)
...+++.|++|+|||+|++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4479999999999999999998643
No 425
>KOG0459|consensus
Probab=97.38 E-value=0.00043 Score=58.34 Aligned_cols=122 Identities=12% Similarity=0.068 Sum_probs=67.8
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcC--CCC------------CcccCcc---------------ceeeEEEEEeeCCe
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDD--AFN------------TTFISTI---------------GIDFKIKTVDLKGK 56 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~--~~~------------~~~~~~~---------------~~~~~~~~~~~~~~ 56 (253)
.-..+|++|+|+-.+||||+-..++.. ..+ ...+.+. |-+...-...+.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 345789999999999999998776421 000 0000000 00111111111222
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh---hHHHHHHHHHH-HHHhcccccceeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK---SFDNILKWLRN-IDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~-i~~~~~~~~p~iiv~nK~D~~ 127 (253)
...+.+.|+||+..|....-.-..++|..++|+++-..+ .|+.=-+.... ++.....-...+++.||+|-.
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddP 230 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 230 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCC
Confidence 356899999999888655545567889999998864321 23322111111 111122345677889999975
No 426
>KOG2484|consensus
Probab=97.37 E-value=0.00013 Score=61.24 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=41.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (253)
.-|++.|+|-|++||||+||.|...+.... -++.|++...+.+.++ ..+.++|.||.
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ld---k~i~llDsPgi 307 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLD---KKIRLLDSPGI 307 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheecc---CCceeccCCce
Confidence 358999999999999999999997766433 2333555555555433 35889999985
No 427
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.36 E-value=0.0014 Score=44.19 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=54.4
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc-chhhhcCccEEEEEEe
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI-TTSYYRGAMGIMLVYD 90 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~ilv~d 90 (253)
+++.|..|+||||+...+...-.... +. ...++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g--------~~--v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG--------KR--VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--------Ce--EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999988764211111 11 11111 6899999986433221 1456678899999888
Q ss_pred CCChhhHHHHHHHHHHHHHhc-ccccceeEEee
Q psy9621 91 ITNEKSFDNILKWLRNIDEHA-NEDVEKMILGK 122 (253)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~n 122 (253)
.+. .++.............. ....+..++.|
T Consensus 68 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 68 PEA-LAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred Cch-hhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 653 34444443332222222 23445555543
No 428
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.34 E-value=0.0037 Score=48.12 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
=|+++|++||||+||.++|...
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3899999999999999999865
No 429
>KOG0469|consensus
Probab=97.31 E-value=0.00065 Score=58.85 Aligned_cols=117 Identities=20% Similarity=0.265 Sum_probs=76.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCC------------CCCc--ccCccceeeEEEEEee----------------CCe
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDA------------FNTT--FISTIGIDFKIKTVDL----------------KGK 56 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~------------~~~~--~~~~~~~~~~~~~~~~----------------~~~ 56 (253)
....|+-|+.+..-|||||...|.... |... ....-+++.....+.+ ++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 346689999999999999999986321 1111 0011123332222222 123
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
..-++++|.|||-.|.+....+++-.|++++|+|..+.-..+.-..+.+.+.. .+.-+++.||.|.+
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRA 163 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHH
Confidence 45689999999999999999999999999999998776544443333333322 34445667999975
No 430
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.29 E-value=0.00022 Score=50.79 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.|+|.|++||||||+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999976
No 431
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00021 Score=54.64 Aligned_cols=23 Identities=22% Similarity=0.647 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
+||+|+|+|||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999865
No 432
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.25 E-value=0.00097 Score=52.41 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=38.0
Q ss_pred EEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccc-cceeEEeeeeccc
Q psy9621 59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED-VEKMILGKTKDTA 127 (253)
Q Consensus 59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~p~iiv~nK~D~~ 127 (253)
.+.++||-..- ....+....++|.+|+|+|.+ ..++....+..+.... -+ .++.+|+||.|-.
T Consensus 135 e~VivDtEAGi--EHfgRg~~~~vD~vivVvDpS-~~sl~taeri~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGI--EHFGRGTIEGVDLVIVVVDPS-YKSLRTAERIKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccch--hhhccccccCCCEEEEEeCCc-HHHHHHHHHHHHHHHH---hCCceEEEEEeeccch
Confidence 35555553221 122234567899999999987 4455554443332222 23 7899999999854
No 433
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.24 E-value=0.00031 Score=43.50 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
..+|.|+.|+|||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 434
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.23 E-value=0.0045 Score=51.88 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=36.5
Q ss_pred EEEEEEeCCCcccccccchhhhc--------CccEEEEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 58 IKLQIWDTAGQERFHTITTSYYR--------GAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
....+++|.|-.+-..+...++. ..+++|-|+|+.+......- .....++ ...-+|++||.|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi------~~AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV------GYADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH------HhCCEEEEeccccC
Confidence 45678889997654444433321 24788999998754322111 1111122 23557888999987
No 435
>PRK08118 topology modulation protein; Reviewed
Probab=97.22 E-value=0.00027 Score=53.59 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
||+|+|++|||||||..++..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998875
No 436
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.21 E-value=0.0011 Score=46.19 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=58.7
Q ss_pred cCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh
Q psy9621 16 GDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK 95 (253)
Q Consensus 16 G~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 95 (253)
+..|+||||+...+...-......++.-+|.. ..... .+.++|+|+... ......+..+|.+|++.+.+ ..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~~~-D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQFGD-DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCCCC-CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-hH
Confidence 56679999987665432111101112111111 11111 789999998643 23345778999999998754 66
Q ss_pred hHHHHHHHHHHHHHhccc-ccceeEEeee
Q psy9621 96 SFDNILKWLRNIDEHANE-DVEKMILGKT 123 (253)
Q Consensus 96 s~~~~~~~~~~i~~~~~~-~~p~iiv~nK 123 (253)
++..+..+++.+.+.... ...+.+++|+
T Consensus 78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 777777777777665433 3456666664
No 437
>KOG2423|consensus
Probab=97.21 E-value=0.00018 Score=60.43 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=54.6
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc--ccchhhhcC
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH--TITTSYYRG 81 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~~~~~~~~~ 81 (253)
++.-..|-|.|||-|++||||+||.|...+.... .|-.|- ++.+++-.-...+.++|+||----. .-....+
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGE---TKVWQYItLmkrIfLIDcPGvVyps~dset~ivL-- 375 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGE---TKVWQYITLMKRIFLIDCPGVVYPSSDSETDIVL-- 375 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCc---chHHHHHHHHhceeEecCCCccCCCCCchHHHHh--
Confidence 4556788999999999999999999998766544 222221 1222221123458899999953211 1112222
Q ss_pred ccEEEEEEeCCChhhHHH
Q psy9621 82 AMGIMLVYDITNEKSFDN 99 (253)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~ 99 (253)
-+++-|=++.+++.+..
T Consensus 376 -kGvVRVenv~~pe~yi~ 392 (572)
T KOG2423|consen 376 -KGVVRVENVKNPEDYID 392 (572)
T ss_pred -hceeeeeecCCHHHHHH
Confidence 25666777888775443
No 438
>PRK07261 topology modulation protein; Provisional
Probab=97.19 E-value=0.0003 Score=53.55 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.||+|+|++|+|||||...+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 439
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.18 E-value=0.0003 Score=51.60 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHhhc
Q psy9621 12 LLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~ 31 (253)
|+++|+||||||||+..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999884
No 440
>KOG0079|consensus
Probab=97.11 E-value=0.00028 Score=51.09 Aligned_cols=54 Identities=52% Similarity=1.002 Sum_probs=46.6
Q ss_pred eccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCch
Q psy9621 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQ 177 (253)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (253)
.|.++++..+++...||++-++++++|++++.++|.++..|++++...-+..+.
T Consensus 62 wDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~ 115 (198)
T KOG0079|consen 62 WDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPK 115 (198)
T ss_pred eecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccc
Confidence 377888888888888999999999999999999999999999999877654443
No 441
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.10 E-value=0.00042 Score=53.80 Aligned_cols=21 Identities=33% Similarity=0.581 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++++|++|||||||++++-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999988764
No 442
>KOG0080|consensus
Probab=97.09 E-value=0.00054 Score=50.39 Aligned_cols=54 Identities=50% Similarity=0.844 Sum_probs=50.0
Q ss_pred eccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCch
Q psy9621 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQ 177 (253)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (253)
-|.++|+..+.+...||+.+++++++|+++..++|.++.-|..++..+...+..
T Consensus 65 WDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~di 118 (209)
T KOG0080|consen 65 WDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDI 118 (209)
T ss_pred EeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccH
Confidence 499999999999999999999999999999999999999999999998865544
No 443
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.05 E-value=0.00039 Score=52.39 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999864
No 444
>KOG0085|consensus
Probab=97.04 E-value=0.00064 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.7
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHh
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRF 29 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l 29 (253)
.....+|++++|.-.+||||++..+
T Consensus 35 ~arrelkllllgtgesgkstfikqm 59 (359)
T KOG0085|consen 35 DARRELKLLLLGTGESGKSTFIKQM 59 (359)
T ss_pred hhhhhheeeeecCCCcchhhHHHHH
Confidence 3456789999999999999999876
No 445
>KOG0087|consensus
Probab=97.03 E-value=0.0009 Score=51.50 Aligned_cols=55 Identities=49% Similarity=1.009 Sum_probs=50.7
Q ss_pred eeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCC
Q psy9621 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 175 (253)
Q Consensus 121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (253)
+.--|.++|+.+..+..+||+.+.+++++||++...+|+++..|+.++..|.+++
T Consensus 65 aqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n 119 (222)
T KOG0087|consen 65 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSN 119 (222)
T ss_pred EeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC
Confidence 3445999999999999999999999999999999999999999999999998654
No 446
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.02 E-value=0.004 Score=54.06 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=40.0
Q ss_pred cccccchhhhcCccEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 70 RFHTITTSYYRGAMGIMLVYDITNE---KSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 70 ~~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
+.-......+++++++|| +.| -+...+.+++..+.+....+..++++..|.+-.
T Consensus 147 QRVEIlKaLyr~a~iLIL----DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev 203 (501)
T COG3845 147 QRVEILKALYRGARLLIL----DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEV 203 (501)
T ss_pred HHHHHHHHHhcCCCEEEE----cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH
Confidence 334455667889998887 334 346677788888888877899999999998754
No 447
>KOG0098|consensus
Probab=97.00 E-value=0.00075 Score=50.95 Aligned_cols=55 Identities=51% Similarity=0.907 Sum_probs=50.5
Q ss_pred eeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCC
Q psy9621 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 175 (253)
Q Consensus 121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (253)
++--|.+++++...++..||..+.+++++|+++..++|+++..|+.++..+..++
T Consensus 57 lqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N 111 (216)
T KOG0098|consen 57 LQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN 111 (216)
T ss_pred EEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC
Confidence 3556999999999999999999999999999999999999999999999987544
No 448
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=96.97 E-value=0.053 Score=40.78 Aligned_cols=144 Identities=11% Similarity=0.047 Sum_probs=95.5
Q ss_pred ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEe-CCCcccccccchhhhcC
Q psy9621 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD-TAGQERFHTITTSYYRG 81 (253)
Q Consensus 3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D-t~G~~~~~~~~~~~~~~ 81 (253)
+-|......|+++|..+.++..|.+.+...... +. +++++-- .|=-.+... .-+.
T Consensus 9 klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~----------l~Vh~a~sLPLp~e~~~----lRpr 64 (176)
T PF11111_consen 9 KLPELNTATILLVGTEEALLQQLAEAMLEEDKE----------FK----------LKVHLAKSLPLPSENNN----LRPR 64 (176)
T ss_pred cCCCcceeEEEEecccHHHHHHHHHHHHhhccc----------ee----------EEEEEeccCCCcccccC----CCce
Confidence 345666789999999999999999999862111 11 1111100 010011111 1257
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621 82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 161 (253)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
.|.++|++|.++..|+..++.-+..+....--+.-.+++.|=...
T Consensus 65 IDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~----------------------------------- 109 (176)
T PF11111_consen 65 IDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRE----------------------------------- 109 (176)
T ss_pred eEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCcc-----------------------------------
Confidence 899999999999999999988777764443234444444332221
Q ss_pred HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.... +..++..+++..+.+|++.+.-.+..+...+=+.|.+++.
T Consensus 110 ------------~~~s-----v~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL~~lq 153 (176)
T PF11111_consen 110 ------------SHCS-----VHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLLRMLQ 153 (176)
T ss_pred ------------cccc-----cCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHHHHHH
Confidence 1122 6778899999999999999999999888888777777664
No 449
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.97 E-value=0.013 Score=49.10 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=59.0
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCC-----------c-cc----------CccceeeEEEEEeeC-------------Ce
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDDAFNT-----------T-FI----------STIGIDFKIKTVDLK-------------GK 56 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~~~~~-----------~-~~----------~~~~~~~~~~~~~~~-------------~~ 56 (253)
.++-|-=|||||||++.++...... . .+ ....+.-.+..++++ ..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 4677899999999999998543210 0 00 011111112222211 11
Q ss_pred EEEEEEEeCCCcccccccchhhh--------cCccEEEEEEeCCChhhHHH-HH-HHHHHHHHhcccccceeEEeeeecc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYY--------RGAMGIMLVYDITNEKSFDN-IL-KWLRNIDEHANEDVEKMILGKTKDT 126 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s~~~-~~-~~~~~i~~~~~~~~p~iiv~nK~D~ 126 (253)
.....++.|.|-..-......+. -..|++|-|+|+.+-..... .. ....++ ...=+|++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi------a~AD~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL------AFADVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH------HhCcEEEEecccC
Confidence 24567888988754423222222 23577888999875433221 11 122222 3456789999999
Q ss_pred c
Q psy9621 127 A 127 (253)
Q Consensus 127 ~ 127 (253)
.
T Consensus 158 v 158 (323)
T COG0523 158 V 158 (323)
T ss_pred C
Confidence 7
No 450
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.95 E-value=0.00077 Score=42.97 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~ 32 (253)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998864
No 451
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.95 E-value=0.00061 Score=53.73 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-|+++|++|||||||++-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999997764
No 452
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.92 E-value=0.003 Score=45.72 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 453
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.91 E-value=0.00081 Score=48.48 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAF 34 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~ 34 (253)
-+++++|++|+||||++..+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 3789999999999999999986433
No 454
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.00074 Score=53.62 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHhhc
Q psy9621 12 LLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~ 31 (253)
|+++|++|+|||||++-+.+
T Consensus 32 vsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999987764
No 455
>KOG0083|consensus
Probab=96.90 E-value=0.00075 Score=47.96 Aligned_cols=51 Identities=53% Similarity=0.879 Sum_probs=47.3
Q ss_pred eeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcC
Q psy9621 123 TKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN 173 (253)
Q Consensus 123 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (253)
--|.++|+..+.+..+||+.+...++.|++++..+|+++..|+.+|.++..
T Consensus 51 iwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k 101 (192)
T KOG0083|consen 51 IWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAK 101 (192)
T ss_pred EeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999999999988764
No 456
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.90 E-value=0.00087 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 6899999999999999988763
No 457
>PRK03839 putative kinase; Provisional
Probab=96.88 E-value=0.00079 Score=51.59 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
+|+|+|+|||||||+..++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998875
No 458
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.87 E-value=0.013 Score=44.52 Aligned_cols=64 Identities=8% Similarity=-0.119 Sum_probs=43.6
Q ss_pred EEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.+.++|+|+.... .....+..+|.+|++++.+ ..++..+..+++.+... ......++.|+.+..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL--GIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc--CCceEEEEEeCCccc
Confidence 6899999986432 2445678999999998865 44566666666665542 233567888998754
No 459
>PRK06217 hypothetical protein; Validated
Probab=96.86 E-value=0.00094 Score=51.36 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.||+|+|.+|||||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998853
No 460
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.82 E-value=0.00098 Score=47.91 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~ 32 (253)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998863
No 461
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.81 E-value=0.00094 Score=53.77 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++++|+.|||||||++++.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999875
No 462
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.79 E-value=0.0011 Score=51.08 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++|+|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998653
No 463
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.78 E-value=0.0011 Score=47.53 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~ 32 (253)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 464
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.78 E-value=0.0011 Score=48.47 Aligned_cols=21 Identities=43% Similarity=0.765 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~ 32 (253)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999863
No 465
>KOG0078|consensus
Probab=96.78 E-value=0.00082 Score=51.72 Aligned_cols=54 Identities=76% Similarity=1.231 Sum_probs=50.0
Q ss_pred eeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCC
Q psy9621 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 175 (253)
Q Consensus 122 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (253)
---|.++|+...++...|++.+++++++|+++++.+|+++..|+..+.++..+.
T Consensus 64 QiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~ 117 (207)
T KOG0078|consen 64 QIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD 117 (207)
T ss_pred EEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC
Confidence 345999999999999999999999999999999999999999999999998653
No 466
>PRK14530 adenylate kinase; Provisional
Probab=96.78 E-value=0.0011 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999998864
No 467
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.74 E-value=0.008 Score=45.96 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 6899999999999999988764
No 468
>PRK14532 adenylate kinase; Provisional
Probab=96.73 E-value=0.0012 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
++|+++|+|||||||+..++..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998874
No 469
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.73 E-value=0.0013 Score=45.63 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~ 30 (253)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 358999999999999999875
No 470
>PRK00625 shikimate kinase; Provisional
Probab=96.73 E-value=0.0013 Score=50.18 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
++|+++|.+||||||+...+..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 471
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.72 E-value=0.0014 Score=47.92 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 472
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.70 E-value=0.0015 Score=49.94 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~ 30 (253)
-.++|+|+.|+|||||++.++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 378999999999999999875
No 473
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.69 E-value=0.004 Score=47.29 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++++|++|+|||||+|-+-+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 689999999999999998765
No 474
>PRK13949 shikimate kinase; Provisional
Probab=96.66 E-value=0.0016 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
+|+|+|++|+|||||...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987764
No 475
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.66 E-value=0.0014 Score=50.12 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998754
No 476
>KOG3347|consensus
Probab=96.65 E-value=0.0013 Score=47.96 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.6
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
+.....||+|-|-||+|||||..++..
T Consensus 3 ~~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 3 PERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 346678999999999999999999874
No 477
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.64 E-value=0.0015 Score=50.31 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
--|+|+|++||||||+++++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 478
>PRK10646 ADP-binding protein; Provisional
Probab=96.64 E-value=0.0099 Score=44.07 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-|++-|+-|+|||||++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998753
No 479
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.63 E-value=0.0041 Score=44.37 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
--|++-|+-|+|||||++.+..
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~ 37 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLAR 37 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999874
No 480
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.63 E-value=0.32 Score=40.36 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=40.2
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhc-cccccee-EEeeeec
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKM-ILGKTKD 125 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~i-iv~nK~D 125 (253)
.+.+.++||+|.-.... ....+..+|.+|++.+. ++.++..+...++.+.... ..+++.. ++.|+.+
T Consensus 115 ~yD~IiIDt~~~l~~~a-~~aal~~AD~viIp~~p-~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVCGG-FAAPLNYADYCIIITDN-GFDALFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCcceech-hhhhhhcCCEEEEEecC-CHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 35688999987522111 12345679999998875 4666666665555544432 2344443 7778876
No 481
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.62 E-value=0.0017 Score=47.62 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.|+|+|+.|+|||||+..+.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.62 E-value=0.0016 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-|+|+|++|||||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999863
No 483
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0012 Score=50.15 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDA 33 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~ 33 (253)
.=+++.||+|||||||+++|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999754
No 484
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.60 E-value=0.0017 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.+|++|+|++|||||+|+-.++..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 469999999999999999888753
No 485
>PRK02496 adk adenylate kinase; Provisional
Probab=96.60 E-value=0.0019 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.|++|+|+||+||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
No 486
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.60 E-value=0.002 Score=49.74 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
=|+|+|++|||||||+++|...
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999864
No 487
>PRK14531 adenylate kinase; Provisional
Probab=96.58 E-value=0.0019 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..+|+++|+|||||||+..++..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998864
No 488
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.0017 Score=50.47 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHhh
Q psy9621 12 LLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~ 30 (253)
.+++||+|+|||||++.|-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 5899999999999997764
No 489
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.58 E-value=0.0073 Score=47.09 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~ 32 (253)
|+|.|++|+||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988754
No 490
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.57 E-value=0.0018 Score=51.57 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
+||+|+|+|||||||+...+..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
No 491
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.57 E-value=0.002 Score=49.74 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-.++++|++|+|||||++.+.+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999998863
No 492
>PRK01889 GTPase RsgA; Reviewed
Probab=96.56 E-value=0.0025 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-+++++|.+|+|||||++.+.+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 37999999999999999999864
No 493
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.54 E-value=0.015 Score=48.37 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=19.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhh
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~ 30 (253)
...-|+|+|-.|+||||=+-++.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA 160 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLA 160 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHH
Confidence 46789999999999999887764
No 494
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.53 E-value=0.0019 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-|+++|++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999987765
No 495
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.53 E-value=0.0055 Score=51.52 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=40.4
Q ss_pred CCCc-ccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 65 TAGQ-ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 65 t~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.+|+ ..+.......+...|+++-|+|+-+|.+... ..+.+.. .+.|.++|+||.|+.
T Consensus 17 ~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v-~~k~~i~vlNK~DL~ 74 (322)
T COG1161 17 FPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV-KEKPKLLVLNKADLA 74 (322)
T ss_pred CCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHH-ccCCcEEEEehhhcC
Confidence 3665 3456667778899999999999988865333 2222222 456669999999997
No 496
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.0064 Score=45.41 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+.
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999988764
No 497
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.50 E-value=0.0023 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5899999999999999988864
No 498
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.50 E-value=0.0019 Score=49.98 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
+|+|+|+|||||||+...|..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 499
>KOG0094|consensus
Probab=96.50 E-value=0.0033 Score=47.95 Aligned_cols=52 Identities=42% Similarity=0.763 Sum_probs=48.1
Q ss_pred eccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCC
Q psy9621 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 175 (253)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (253)
-|.+||+..+.+...|++.+.+++++||+++..+|++..+|++.........
T Consensus 76 WDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~ 127 (221)
T KOG0094|consen 76 WDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD 127 (221)
T ss_pred EecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC
Confidence 4999999999999999999999999999999999999999999888876543
No 500
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.46 E-value=0.0022 Score=49.98 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~ 32 (253)
|.|.|++|||||||.+.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998753
Done!