Query psy9621
Match_columns 253
No_of_seqs 126 out of 1410
Neff 10.0
Searched_HMMs 29240
Date Sat Aug 17 00:27:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 8.1E-43 2.8E-47 274.8 17.9 195 8-253 12-207 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 5.4E-36 1.9E-40 234.5 22.2 174 1-226 1-174 (206)
3 3cpj_B GTP-binding protein YPT 100.0 6.6E-35 2.3E-39 231.3 19.7 172 6-228 10-181 (223)
4 1vg8_A RAS-related protein RAB 100.0 2.1E-35 7.3E-40 231.1 15.7 173 1-226 1-178 (207)
5 2ew1_A RAS-related protein RAB 100.0 3.1E-34 1.1E-38 223.9 20.2 172 4-226 21-192 (201)
6 2fu5_C RAS-related protein RAB 100.0 6.8E-35 2.3E-39 223.9 16.0 174 1-226 1-174 (183)
7 2j0v_A RAC-like GTP-binding pr 100.0 5.1E-34 1.7E-38 224.3 19.7 202 7-253 7-210 (212)
8 2bov_A RAla, RAS-related prote 100.0 5.1E-34 1.7E-38 223.0 18.6 170 5-226 10-180 (206)
9 2gf9_A RAS-related protein RAB 100.0 2.2E-33 7.4E-38 216.8 21.6 171 4-225 17-187 (189)
10 2a5j_A RAS-related protein RAB 100.0 1.2E-33 4.1E-38 218.7 20.2 173 3-226 15-187 (191)
11 2hup_A RAS-related protein RAB 100.0 6.4E-34 2.2E-38 222.1 18.6 171 4-225 24-195 (201)
12 3tkl_A RAS-related protein RAB 100.0 2.2E-33 7.6E-38 217.7 21.5 173 5-228 12-184 (196)
13 2bme_A RAB4A, RAS-related prot 100.0 1.3E-33 4.5E-38 217.2 19.8 173 5-228 6-178 (186)
14 1z08_A RAS-related protein RAB 100.0 2E-33 6.8E-38 212.9 20.0 167 6-223 3-169 (170)
15 2oil_A CATX-8, RAS-related pro 100.0 1.9E-33 6.5E-38 217.8 20.2 171 4-225 20-190 (193)
16 3tw8_B RAS-related protein RAB 100.0 3.3E-33 1.1E-37 213.7 20.9 170 5-226 5-174 (181)
17 2fn4_A P23, RAS-related protei 100.0 4E-33 1.4E-37 213.2 21.2 173 3-227 3-176 (181)
18 1z0f_A RAB14, member RAS oncog 100.0 2.2E-33 7.4E-38 214.4 19.3 169 4-223 10-178 (179)
19 1zbd_A Rabphilin-3A; G protein 100.0 2.7E-33 9.3E-38 218.6 19.8 172 4-226 3-174 (203)
20 2efe_B Small GTP-binding prote 100.0 3.2E-33 1.1E-37 214.0 19.8 170 5-225 8-177 (181)
21 1g16_A RAS-related protein SEC 100.0 3.5E-33 1.2E-37 211.4 19.5 167 7-225 1-167 (170)
22 2o52_A RAS-related protein RAB 100.0 2.2E-33 7.4E-38 218.9 18.3 173 5-228 21-193 (200)
23 3bc1_A RAS-related protein RAB 100.0 2.9E-33 9.8E-38 216.4 18.8 174 1-225 3-187 (195)
24 3dz8_A RAS-related protein RAB 100.0 2.8E-34 9.4E-39 222.3 13.0 172 4-226 18-189 (191)
25 1r2q_A RAS-related protein RAB 100.0 4E-33 1.4E-37 211.0 19.0 165 7-222 4-168 (170)
26 1ek0_A Protein (GTP-binding pr 100.0 4.1E-33 1.4E-37 210.9 19.0 167 8-222 2-168 (170)
27 2il1_A RAB12; G-protein, GDP, 100.0 3.1E-33 1E-37 216.7 18.1 171 3-224 20-191 (192)
28 1z0j_A RAB-22, RAS-related pro 100.0 7.3E-33 2.5E-37 209.7 19.7 166 6-222 3-168 (170)
29 1z2a_A RAS-related protein RAB 100.0 6.7E-33 2.3E-37 209.5 19.3 166 6-223 2-167 (168)
30 2g6b_A RAS-related protein RAB 100.0 1.1E-32 3.7E-37 210.9 20.6 170 5-225 6-176 (180)
31 2fg5_A RAB-22B, RAS-related pr 100.0 4.7E-33 1.6E-37 215.6 18.6 169 4-223 18-186 (192)
32 3t5g_A GTP-binding protein RHE 100.0 1E-32 3.6E-37 211.3 20.4 168 6-225 3-171 (181)
33 2hxs_A RAB-26, RAS-related pro 100.0 5.9E-33 2E-37 211.9 18.7 169 6-225 3-175 (178)
34 3cbq_A GTP-binding protein REM 100.0 6.7E-33 2.3E-37 215.4 18.5 171 3-224 17-189 (195)
35 2p5s_A RAS and EF-hand domain 100.0 3.7E-33 1.3E-37 217.3 17.0 175 4-223 23-197 (199)
36 2gf0_A GTP-binding protein DI- 100.0 4.1E-33 1.4E-37 216.7 17.2 167 6-225 5-173 (199)
37 3c5c_A RAS-like protein 12; GD 100.0 1.2E-32 4.2E-37 212.4 19.4 165 6-223 18-186 (187)
38 3kkq_A RAS-related protein M-R 100.0 2.5E-32 8.6E-37 209.5 21.0 167 5-223 14-182 (183)
39 3q3j_B RHO-related GTP-binding 100.0 8.2E-33 2.8E-37 217.9 18.6 182 4-226 22-206 (214)
40 2y8e_A RAB-protein 6, GH09086P 100.0 1.5E-32 5.3E-37 209.6 18.7 165 8-223 13-177 (179)
41 4dsu_A GTPase KRAS, isoform 2B 100.0 2.5E-32 8.4E-37 210.4 19.9 165 8-225 3-168 (189)
42 2atx_A Small GTP binding prote 100.0 3.2E-32 1.1E-36 211.0 20.6 182 1-223 10-193 (194)
43 2nzj_A GTP-binding protein REM 100.0 2.2E-32 7.6E-37 208.1 19.4 168 7-226 2-172 (175)
44 1ky3_A GTP-binding protein YPT 100.0 1.3E-32 4.6E-37 210.5 18.0 174 1-225 1-180 (182)
45 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.8E-32 1.3E-36 207.3 20.1 168 5-224 3-175 (177)
46 3reg_A RHO-like small GTPase; 100.0 5.1E-32 1.7E-36 210.0 21.1 171 5-226 19-191 (194)
47 1z06_A RAS-related protein RAB 100.0 2.4E-32 8.1E-37 211.0 18.1 168 5-223 16-188 (189)
48 3ihw_A Centg3; RAS, centaurin, 100.0 6.4E-32 2.2E-36 207.9 20.2 165 5-225 16-182 (184)
49 3oes_A GTPase rhebl1; small GT 100.0 2E-32 6.7E-37 213.6 17.4 170 5-226 20-190 (201)
50 3q85_A GTP-binding protein REM 100.0 3.7E-32 1.3E-36 205.8 18.4 165 9-224 2-168 (169)
51 3cph_A RAS-related protein SEC 100.0 7E-32 2.4E-36 212.0 20.3 172 5-228 16-187 (213)
52 1m7b_A RND3/RHOE small GTP-bin 100.0 6.7E-32 2.3E-36 207.6 18.7 178 6-224 4-184 (184)
53 3q72_A GTP-binding protein RAD 100.0 7.6E-32 2.6E-36 203.5 18.4 164 8-224 1-165 (166)
54 2atv_A RERG, RAS-like estrogen 100.0 9.7E-32 3.3E-36 208.8 19.3 168 5-225 24-193 (196)
55 1c1y_A RAS-related protein RAP 100.0 8.7E-32 3E-36 203.1 18.5 163 8-222 2-166 (167)
56 1u8z_A RAS-related protein RAL 100.0 1.5E-31 5.2E-36 201.8 19.8 164 8-223 3-167 (168)
57 1x3s_A RAS-related protein RAB 100.0 1.4E-31 5E-36 207.2 20.0 167 7-225 13-180 (195)
58 2q3h_A RAS homolog gene family 100.0 1.8E-31 6.2E-36 207.9 20.6 181 5-226 16-198 (201)
59 1gwn_A RHO-related GTP-binding 100.0 8.1E-32 2.8E-36 210.8 18.6 179 5-224 24-205 (205)
60 2f7s_A C25KG, RAS-related prot 100.0 1.9E-32 6.3E-37 216.1 14.9 171 4-225 20-201 (217)
61 3clv_A RAB5 protein, putative; 100.0 2.6E-31 9E-36 207.0 20.7 165 6-224 4-205 (208)
62 1kao_A RAP2A; GTP-binding prot 100.0 1.4E-31 4.9E-36 201.7 18.6 163 9-223 3-166 (167)
63 2a9k_A RAS-related protein RAL 100.0 2.3E-31 7.8E-36 204.5 19.4 169 5-225 14-183 (187)
64 2g3y_A GTP-binding protein GEM 100.0 1.5E-31 5.3E-36 209.8 18.7 169 5-225 33-205 (211)
65 2iwr_A Centaurin gamma 1; ANK 100.0 2.2E-31 7.6E-36 203.4 19.1 163 7-225 5-171 (178)
66 3gj0_A GTP-binding nuclear pro 100.0 6.5E-32 2.2E-36 213.7 16.4 172 1-226 7-178 (221)
67 4djt_A GTP-binding nuclear pro 100.0 1.5E-31 5.1E-36 211.0 18.1 173 5-228 7-180 (218)
68 1mh1_A RAC1; GTP-binding, GTPa 100.0 4.9E-31 1.7E-35 202.5 19.7 177 8-225 4-182 (186)
69 3l0i_B RAS-related protein RAB 100.0 2.5E-33 8.5E-38 218.3 6.4 169 5-224 29-197 (199)
70 2yc2_C IFT27, small RAB-relate 100.0 3.4E-32 1.2E-36 212.8 12.9 168 7-225 18-194 (208)
71 2fv8_A H6, RHO-related GTP-bin 100.0 1.3E-30 4.5E-35 204.2 20.9 179 6-225 22-202 (207)
72 2gco_A H9, RHO-related GTP-bin 100.0 1.2E-30 4.2E-35 203.4 20.5 177 6-223 22-200 (201)
73 2j1l_A RHO-related GTP-binding 100.0 7.3E-31 2.5E-35 206.7 19.3 178 7-225 32-211 (214)
74 3t1o_A Gliding protein MGLA; G 100.0 4.7E-32 1.6E-36 210.2 11.8 167 5-226 10-195 (198)
75 2erx_A GTP-binding protein DI- 100.0 6.4E-31 2.2E-35 199.2 17.3 164 8-223 2-167 (172)
76 3bwd_D RAC-like GTP-binding pr 100.0 1.7E-31 5.8E-36 204.6 13.7 174 7-223 6-181 (182)
77 3con_A GTPase NRAS; structural 100.0 4.1E-30 1.4E-34 198.4 20.8 166 7-225 19-185 (190)
78 2ce2_X GTPase HRAS; signaling 100.0 5.2E-30 1.8E-34 192.8 20.7 162 9-223 3-165 (166)
79 2cjw_A GTP-binding protein GEM 100.0 3.8E-30 1.3E-34 199.3 19.6 167 7-225 4-174 (192)
80 4bas_A ADP-ribosylation factor 100.0 2.5E-30 8.6E-35 200.9 16.9 170 4-225 12-191 (199)
81 4gzl_A RAS-related C3 botulinu 100.0 5.2E-30 1.8E-34 200.4 18.0 176 5-221 26-203 (204)
82 1upt_A ARL1, ADP-ribosylation 100.0 1E-29 3.5E-34 192.6 16.2 166 6-224 4-170 (171)
83 2f9l_A RAB11B, member RAS onco 100.0 4.1E-29 1.4E-33 194.4 19.9 169 6-225 2-170 (199)
84 1oix_A RAS-related protein RAB 100.0 8.9E-29 3.1E-33 191.4 20.4 168 3-221 23-190 (191)
85 1zd9_A ADP-ribosylation factor 100.0 4.1E-30 1.4E-34 198.3 11.6 166 7-224 20-186 (188)
86 1r8s_A ADP-ribosylation factor 100.0 5.3E-30 1.8E-34 193.0 11.2 161 10-223 1-162 (164)
87 2b6h_A ADP-ribosylation factor 100.0 1.1E-29 3.7E-34 196.7 13.1 167 4-223 24-191 (192)
88 2h57_A ADP-ribosylation factor 100.0 5.7E-29 1.9E-33 192.1 17.1 161 6-223 18-187 (190)
89 2zej_A Dardarin, leucine-rich 100.0 4.1E-30 1.4E-34 197.7 10.6 169 9-226 2-181 (184)
90 1zj6_A ADP-ribosylation factor 100.0 3.6E-29 1.2E-33 192.8 15.4 161 7-225 14-180 (187)
91 1ksh_A ARF-like protein 2; sma 100.0 3.2E-29 1.1E-33 192.8 14.9 165 7-224 16-181 (186)
92 1f6b_A SAR1; gtpases, N-termin 100.0 3.8E-29 1.3E-33 194.6 14.8 171 7-220 23-196 (198)
93 2x77_A ADP-ribosylation factor 100.0 2.8E-29 9.5E-34 193.6 13.1 166 7-225 20-186 (189)
94 2h17_A ADP-ribosylation factor 100.0 2.5E-29 8.5E-34 192.7 11.8 163 5-220 17-180 (181)
95 1fzq_A ADP-ribosylation factor 100.0 2.4E-29 8.2E-34 192.9 11.7 164 7-223 14-178 (181)
96 1m2o_B GTP-binding protein SAR 100.0 1.3E-28 4.6E-33 190.2 15.9 168 7-220 21-189 (190)
97 3llu_A RAS-related GTP-binding 100.0 4.8E-29 1.6E-33 193.6 13.2 170 3-221 14-195 (196)
98 1moz_A ARL1, ADP-ribosylation 100.0 5.5E-29 1.9E-33 190.8 12.3 166 7-225 16-182 (183)
99 2wkq_A NPH1-1, RAS-related C3 100.0 7.3E-28 2.5E-32 201.4 19.9 176 7-223 153-330 (332)
100 3th5_A RAS-related C3 botulinu 99.9 9.5E-31 3.2E-35 204.4 0.0 175 6-221 27-203 (204)
101 3c5h_A Glucocorticoid receptor 100.0 1.9E-28 6.4E-33 197.9 9.5 165 5-222 15-254 (255)
102 2wji_A Ferrous iron transport 100.0 4.4E-27 1.5E-31 177.6 15.9 153 9-221 3-163 (165)
103 2fh5_B SR-beta, signal recogni 99.9 2.6E-27 9E-32 186.1 13.2 185 7-220 5-213 (214)
104 2lkc_A Translation initiation 99.9 1.6E-27 5.4E-32 181.7 11.4 170 5-227 4-175 (178)
105 3o47_A ADP-ribosylation factor 99.9 1.5E-27 5E-32 199.3 11.6 165 7-224 163-328 (329)
106 3r7w_B Gtpase2, GTP-binding pr 99.9 1.8E-27 6E-32 195.8 8.2 163 11-224 1-175 (331)
107 2qu8_A Putative nucleolar GTP- 99.9 6.3E-26 2.1E-30 180.1 16.2 168 7-225 27-207 (228)
108 3lvq_E ARF-GAP with SH3 domain 99.9 6.1E-26 2.1E-30 199.8 17.3 169 6-227 319-488 (497)
109 1svi_A GTP-binding protein YSX 99.9 2.1E-26 7.1E-31 178.2 11.8 164 3-222 17-194 (195)
110 2wjg_A FEOB, ferrous iron tran 99.9 8.3E-26 2.8E-30 173.8 14.6 158 8-225 6-171 (188)
111 3r7w_A Gtpase1, GTP-binding pr 99.9 7.6E-26 2.6E-30 187.3 15.1 166 8-222 2-180 (307)
112 2cxx_A Probable GTP-binding pr 99.9 3.6E-26 1.2E-30 176.0 10.9 156 10-225 2-186 (190)
113 2gj8_A MNME, tRNA modification 99.9 2.4E-26 8.3E-31 174.8 9.6 155 8-223 3-166 (172)
114 2dyk_A GTP-binding protein; GT 99.9 1.5E-25 5E-30 167.9 13.1 150 10-221 2-160 (161)
115 3pqc_A Probable GTP-binding pr 99.9 4E-25 1.4E-29 170.7 14.3 164 1-223 15-194 (195)
116 3a1s_A Iron(II) transport prot 99.9 1.4E-24 4.9E-29 175.3 16.6 155 8-222 4-166 (258)
117 3dpu_A RAB family protein; roc 99.9 4.7E-26 1.6E-30 202.1 8.4 165 6-225 38-210 (535)
118 3b1v_A Ferrous iron uptake tra 99.9 5.2E-25 1.8E-29 178.9 12.2 154 8-222 2-163 (272)
119 3iby_A Ferrous iron transport 99.9 6E-25 2E-29 177.2 12.3 151 10-220 2-164 (256)
120 3iev_A GTP-binding protein ERA 99.9 4.1E-24 1.4E-28 176.9 15.7 166 5-225 6-184 (308)
121 4dhe_A Probable GTP-binding pr 99.9 1.2E-24 4.1E-29 171.9 11.8 171 2-225 22-213 (223)
122 3k53_A Ferrous iron transport 99.9 1E-23 3.4E-28 171.7 16.4 158 9-225 3-168 (271)
123 3i8s_A Ferrous iron transport 99.9 2.4E-24 8.3E-29 175.5 12.5 155 9-223 3-169 (274)
124 1nrj_B SR-beta, signal recogni 99.9 2E-25 6.8E-30 175.9 5.8 119 1-128 4-134 (218)
125 3qq5_A Small GTP-binding prote 99.9 7.9E-24 2.7E-28 181.2 6.4 164 1-224 26-197 (423)
126 2hjg_A GTP-binding protein ENG 99.9 4.1E-23 1.4E-27 178.8 10.7 167 7-225 173-351 (436)
127 1wf3_A GTP-binding protein; GT 99.9 1.3E-22 4.3E-27 167.2 12.9 161 1-223 1-173 (301)
128 2e87_A Hypothetical protein PH 99.9 1.2E-21 3.9E-26 165.5 17.2 162 7-224 165-337 (357)
129 1lnz_A SPO0B-associated GTP-bi 99.9 1.1E-22 3.9E-27 169.9 10.7 158 10-225 159-332 (342)
130 3gee_A MNME, tRNA modification 99.9 4.2E-22 1.4E-26 173.2 14.4 157 8-222 232-397 (476)
131 1mky_A Probable GTP-binding pr 99.9 9.9E-22 3.4E-26 170.3 16.3 176 10-246 2-192 (439)
132 4dcu_A GTP-binding protein ENG 99.9 4.1E-22 1.4E-26 173.4 12.7 164 6-226 192-372 (456)
133 3sjy_A Translation initiation 99.9 4.4E-21 1.5E-25 164.4 18.3 163 4-223 3-192 (403)
134 2hjg_A GTP-binding protein ENG 99.9 1.2E-22 4.1E-27 175.9 8.2 176 9-246 3-187 (436)
135 3lxx_A GTPase IMAP family memb 99.9 2.2E-21 7.4E-26 155.0 12.9 172 4-224 24-215 (239)
136 2xtp_A GTPase IMAP family memb 99.9 6.3E-21 2.2E-25 154.2 15.1 173 5-225 18-210 (260)
137 3j2k_7 ERF3, eukaryotic polype 99.9 3.8E-21 1.3E-25 166.3 14.2 121 5-127 13-168 (439)
138 3cb4_D GTP-binding protein LEP 99.9 2.4E-21 8.1E-26 172.4 13.1 161 7-224 2-183 (599)
139 3lxw_A GTPase IMAP family memb 99.9 9.6E-21 3.3E-25 152.0 14.6 174 6-224 18-209 (247)
140 1xzp_A Probable tRNA modificat 99.9 2.9E-21 1E-25 168.1 12.3 153 9-223 243-405 (482)
141 2ywe_A GTP-binding protein LEP 99.9 8E-21 2.7E-25 168.7 15.0 163 5-224 2-185 (600)
142 3izy_P Translation initiation 99.8 1.1E-22 3.7E-27 178.5 2.4 162 8-224 3-169 (537)
143 1s0u_A EIF-2-gamma, translatio 99.8 2.4E-20 8.4E-25 160.1 16.3 163 6-223 5-198 (408)
144 2ged_A SR-beta, signal recogni 99.8 9.8E-22 3.4E-26 151.6 6.6 116 6-130 45-172 (193)
145 1cip_A Protein (guanine nucleo 99.8 1.3E-20 4.4E-25 158.0 13.2 135 57-227 192-348 (353)
146 1wb1_A Translation elongation 99.8 1.7E-20 5.9E-25 163.8 14.1 157 8-222 18-188 (482)
147 3geh_A MNME, tRNA modification 99.8 4E-21 1.4E-25 166.5 10.0 155 8-225 223-386 (462)
148 1kk1_A EIF2gamma; initiation o 99.8 3.6E-20 1.2E-24 159.2 15.4 164 5-223 6-200 (410)
149 1ega_A Protein (GTP-binding pr 99.8 9E-21 3.1E-25 156.3 10.9 158 8-223 7-175 (301)
150 3t5d_A Septin-7; GTP-binding p 99.8 6.4E-21 2.2E-25 155.3 9.2 165 6-223 5-204 (274)
151 1zun_B Sulfate adenylate trans 99.8 1.1E-20 3.7E-25 163.5 11.0 161 4-215 19-216 (434)
152 3ohm_A Guanine nucleotide-bind 99.8 2.9E-20 1E-24 153.7 12.7 138 56-228 165-323 (327)
153 3p26_A Elongation factor 1 alp 99.8 1.1E-20 3.9E-25 165.4 10.8 120 7-127 31-184 (483)
154 3tr5_A RF-3, peptide chain rel 99.8 8.5E-21 2.9E-25 167.0 10.0 123 5-131 9-151 (528)
155 1mky_A Probable GTP-binding pr 99.8 6.4E-20 2.2E-24 158.9 15.3 166 7-224 178-356 (439)
156 2qtf_A Protein HFLX, GTP-bindi 99.8 1E-19 3.4E-24 153.5 15.6 164 10-226 179-357 (364)
157 2qag_A Septin-2, protein NEDD5 99.8 3E-21 1E-25 162.9 6.1 165 6-226 34-236 (361)
158 1jny_A EF-1-alpha, elongation 99.8 4E-21 1.4E-25 166.2 6.3 163 7-215 4-205 (435)
159 4dcu_A GTP-binding protein ENG 99.8 4.6E-21 1.6E-25 166.9 6.5 176 9-246 23-207 (456)
160 2xtz_A Guanine nucleotide-bind 99.8 3.3E-20 1.1E-24 155.5 10.8 141 56-226 181-348 (354)
161 1g7s_A Translation initiation 99.8 1E-19 3.5E-24 162.0 13.6 114 8-128 4-136 (594)
162 2c78_A Elongation factor TU-A; 99.8 4.8E-20 1.7E-24 158.1 10.0 118 6-127 8-141 (405)
163 1d2e_A Elongation factor TU (E 99.8 7.6E-20 2.6E-24 156.4 11.1 163 8-222 2-194 (397)
164 4fid_A G protein alpha subunit 99.8 8.1E-20 2.8E-24 151.6 10.6 157 56-227 159-331 (340)
165 1f60_A Elongation factor EEF1A 99.8 1.3E-20 4.6E-25 163.7 5.2 116 7-127 5-158 (458)
166 1zo1_I IF2, translation initia 99.8 4E-21 1.4E-25 167.3 1.6 112 8-128 3-117 (501)
167 1r5b_A Eukaryotic peptide chai 99.8 5.4E-21 1.8E-25 166.6 1.4 117 7-127 41-194 (467)
168 3izq_1 HBS1P, elongation facto 99.8 3.6E-20 1.2E-24 165.8 6.3 121 7-127 165-318 (611)
169 2dy1_A Elongation factor G; tr 99.8 3.7E-19 1.3E-23 161.0 12.8 123 1-127 1-139 (665)
170 2elf_A Protein translation elo 99.8 2.4E-19 8.3E-24 151.5 10.6 148 11-223 23-180 (370)
171 1pui_A ENGB, probable GTP-bind 99.8 7E-19 2.4E-23 137.4 11.8 161 5-223 22-199 (210)
172 2rdo_7 EF-G, elongation factor 99.8 1.6E-18 5.5E-23 157.6 15.2 126 1-130 1-150 (704)
173 2h5e_A Peptide chain release f 99.8 2E-19 6.8E-24 158.4 8.4 122 6-131 10-151 (529)
174 1dar_A EF-G, elongation factor 99.8 1.7E-18 5.8E-23 157.2 13.8 213 5-225 8-284 (691)
175 3mca_A HBS1, elongation factor 99.8 2.4E-20 8.3E-25 166.4 1.3 121 4-127 172-328 (592)
176 2aka_B Dynamin-1; fusion prote 99.8 1.5E-19 5E-24 149.0 5.3 120 5-127 22-205 (299)
177 3def_A T7I23.11 protein; chlor 99.8 6E-18 2.1E-22 136.8 12.7 117 8-127 35-164 (262)
178 3avx_A Elongation factor TS, e 99.8 1.2E-18 4.1E-23 162.2 9.4 165 6-222 293-485 (1289)
179 2xex_A Elongation factor G; GT 99.7 2.1E-18 7.4E-23 156.6 9.5 124 1-130 1-143 (693)
180 2qnr_A Septin-2, protein NEDD5 99.7 1.2E-18 4E-23 143.6 6.2 165 7-225 16-216 (301)
181 1u0l_A Probable GTPase ENGC; p 99.7 2.4E-18 8.1E-23 141.8 7.5 134 24-219 32-169 (301)
182 1udx_A The GTP-binding protein 99.7 4.9E-17 1.7E-21 138.8 15.0 161 11-226 159-328 (416)
183 1h65_A Chloroplast outer envel 99.7 2.6E-17 8.8E-22 133.7 10.7 120 7-128 37-168 (270)
184 3vqt_A RF-3, peptide chain rel 99.7 1.6E-17 5.3E-22 147.0 10.0 126 7-136 29-174 (548)
185 1zcb_A G alpha I/13; GTP-bindi 99.7 3.6E-17 1.2E-21 137.5 11.2 170 19-227 157-357 (362)
186 2j69_A Bacterial dynamin-like 99.7 1.5E-16 5.2E-21 144.5 14.8 118 7-127 67-243 (695)
187 3t34_A Dynamin-related protein 99.7 1.2E-17 4.2E-22 141.1 6.4 120 8-129 33-218 (360)
188 1azs_C GS-alpha; complex (lyas 99.7 2.4E-16 8.2E-21 133.6 14.2 85 41-129 204-299 (402)
189 1wxq_A GTP-binding protein; st 99.7 8.6E-17 2.9E-21 137.0 9.8 85 10-94 1-114 (397)
190 2qag_C Septin-7; cell cycle, c 99.7 6.9E-17 2.4E-21 138.0 8.1 161 7-222 29-226 (418)
191 3j25_A Tetracycline resistance 99.7 8.7E-18 3E-22 151.4 1.9 214 9-226 2-242 (638)
192 1jwy_B Dynamin A GTPase domain 99.7 2.3E-16 7.8E-21 130.8 9.5 67 58-127 131-211 (315)
193 2wsm_A Hydrogenase expression/ 99.6 2E-16 6.9E-21 124.4 7.5 157 7-225 28-216 (221)
194 4fn5_A EF-G 1, elongation fact 99.6 1.1E-15 3.9E-20 139.3 12.1 127 1-131 4-154 (709)
195 2x2e_A Dynamin-1; nitration, h 99.6 2E-16 6.7E-21 133.3 4.6 119 6-127 28-210 (353)
196 2hf9_A Probable hydrogenase ni 99.6 9.5E-18 3.2E-22 132.5 -4.1 155 7-223 36-224 (226)
197 1n0u_A EF-2, elongation factor 99.6 3E-15 1E-19 138.6 10.9 119 6-128 16-164 (842)
198 1jal_A YCHF protein; nucleotid 99.6 1.2E-14 4E-19 121.7 13.0 83 9-93 2-108 (363)
199 3p32_A Probable GTPase RV1496/ 99.6 1.7E-15 5.9E-20 127.6 6.8 107 57-223 171-284 (355)
200 2qpt_A EH domain-containing pr 99.5 6E-15 2.1E-19 130.6 7.6 125 4-132 60-236 (550)
201 2dby_A GTP-binding protein; GD 99.5 1.1E-13 3.8E-18 116.4 11.6 78 10-93 2-111 (368)
202 4a9a_A Ribosome-interacting GT 99.5 3.5E-13 1.2E-17 113.4 13.2 208 7-223 70-300 (376)
203 2www_A Methylmalonic aciduria 99.5 1.3E-13 4.5E-18 115.6 10.5 59 58-127 167-225 (349)
204 1yrb_A ATP(GTP)binding protein 99.5 6.1E-13 2.1E-17 107.1 12.6 135 58-223 109-257 (262)
205 2p67_A LAO/AO transport system 99.5 4.1E-14 1.4E-18 118.5 5.4 106 57-222 148-260 (341)
206 2yv5_A YJEQ protein; hydrolase 99.4 1.1E-12 3.7E-17 108.0 9.9 97 68-218 66-164 (302)
207 3zvr_A Dynamin-1; hydrolase, D 99.3 2.3E-12 8E-17 116.8 9.4 118 7-127 49-230 (772)
208 2qm8_A GTPase/ATPase; G protei 99.3 6.8E-12 2.3E-16 104.7 10.3 104 57-222 147-260 (337)
209 2ohf_A Protein OLA1, GTP-bindi 99.2 1.1E-11 3.6E-16 104.8 5.9 90 8-97 21-132 (396)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 3.1E-10 1.1E-14 96.0 14.4 86 8-93 19-127 (392)
211 3l82_B F-box only protein 4; T 99.2 8.2E-12 2.8E-16 95.5 4.0 109 67-225 111-225 (227)
212 3l2o_B F-box only protein 4; s 99.0 1.2E-10 4.1E-15 93.4 3.9 111 65-225 194-310 (312)
213 2j37_W Signal recognition part 99.0 4.2E-10 1.4E-14 98.2 4.8 114 7-127 99-253 (504)
214 3h2y_A GTPase family protein; 98.8 4.7E-09 1.6E-13 88.5 7.3 101 67-221 55-158 (368)
215 3ec1_A YQEH GTPase; atnos1, at 98.7 2.2E-09 7.6E-14 90.6 1.6 110 9-127 162-287 (369)
216 3ec1_A YQEH GTPase; atnos1, at 98.7 1.4E-08 4.8E-13 85.7 5.5 101 67-221 57-160 (369)
217 3h2y_A GTPase family protein; 98.7 1.3E-09 4.5E-14 91.9 -0.9 112 9-127 160-286 (368)
218 2qag_B Septin-6, protein NEDD5 98.7 1.5E-07 5.3E-12 80.2 10.9 64 6-69 39-106 (427)
219 1tq4_A IIGP1, interferon-induc 98.6 9.4E-07 3.2E-11 75.3 14.5 112 9-127 69-188 (413)
220 1puj_A YLQF, conserved hypothe 98.6 5.4E-08 1.8E-12 79.0 6.3 123 63-246 4-132 (282)
221 3dm5_A SRP54, signal recogniti 98.5 1.9E-07 6.3E-12 80.0 7.0 113 9-127 100-252 (443)
222 3cnl_A YLQF, putative uncharac 98.5 4.6E-08 1.6E-12 78.6 2.8 57 10-70 100-156 (262)
223 1puj_A YLQF, conserved hypothe 98.5 1.2E-07 4.2E-12 76.9 5.1 59 7-69 118-176 (282)
224 3sop_A Neuronal-specific septi 98.4 7.1E-07 2.4E-11 71.9 8.5 114 9-129 2-155 (270)
225 2v3c_C SRP54, signal recogniti 98.4 2.1E-07 7.3E-12 79.9 4.0 64 57-127 180-251 (432)
226 3kl4_A SRP54, signal recogniti 98.3 1.3E-07 4.4E-12 81.0 2.2 113 9-127 97-251 (433)
227 1j8m_F SRP54, signal recogniti 98.3 2.1E-06 7.1E-11 70.2 7.4 64 57-127 180-252 (297)
228 1f5n_A Interferon-induced guan 98.1 3.9E-06 1.3E-10 74.5 6.4 65 6-70 35-103 (592)
229 3e70_C DPA, signal recognition 98.0 1.4E-05 4.8E-10 66.1 8.1 24 8-31 128-151 (328)
230 3cnl_A YLQF, putative uncharac 97.9 4.1E-06 1.4E-10 67.1 3.3 55 65-127 4-59 (262)
231 1bif_A 6-phosphofructo-2-kinas 97.9 7.6E-08 2.6E-12 83.8 -7.5 118 7-126 37-172 (469)
232 3szr_A Interferon-induced GTP- 97.9 2.5E-05 8.4E-10 70.1 7.4 23 11-33 47-69 (608)
233 1t9h_A YLOQ, probable GTPase E 97.8 1.8E-05 6.2E-10 64.7 5.4 53 72-127 77-130 (307)
234 2rcn_A Probable GTPase ENGC; Y 97.5 0.00046 1.6E-08 57.5 9.0 46 78-127 127-173 (358)
235 2xxa_A Signal recognition part 97.5 0.00055 1.9E-08 58.7 9.5 64 57-127 183-253 (433)
236 1vma_A Cell division protein F 97.4 0.00093 3.2E-08 54.6 9.4 21 10-30 105-125 (306)
237 2ffh_A Protein (FFH); SRP54, s 97.4 0.00066 2.3E-08 58.0 8.7 64 57-127 180-250 (425)
238 3q5d_A Atlastin-1; G protein, 97.3 0.00042 1.4E-08 59.5 6.8 25 7-31 65-89 (447)
239 1ye8_A Protein THEP1, hypothet 97.3 0.00012 4E-09 55.1 2.9 22 10-31 1-22 (178)
240 1ls1_A Signal recognition part 97.2 0.0014 4.7E-08 53.3 8.8 21 10-30 99-119 (295)
241 1zp6_A Hypothetical protein AT 97.2 0.00021 7.3E-09 53.9 3.5 24 9-32 9-32 (191)
242 1kgd_A CASK, peripheral plasma 97.1 0.0002 7E-09 53.7 2.7 22 11-32 7-28 (180)
243 3cwq_A Para family chromosome 97.1 0.00043 1.5E-08 53.3 4.6 66 57-127 67-133 (209)
244 1t9h_A YLOQ, probable GTPase E 97.1 0.00019 6.3E-09 58.7 2.3 23 10-32 174-196 (307)
245 1lvg_A Guanylate kinase, GMP k 97.1 0.00025 8.5E-09 54.2 2.7 21 11-31 6-26 (198)
246 1knq_A Gluconate kinase; ALFA/ 97.0 0.00048 1.7E-08 51.2 3.7 30 1-31 1-30 (175)
247 4gp7_A Metallophosphoesterase; 97.0 0.00036 1.2E-08 51.9 2.7 20 11-30 11-30 (171)
248 3a00_A Guanylate kinase, GMP k 96.9 0.00037 1.3E-08 52.6 2.6 21 12-32 4-24 (186)
249 3tr0_A Guanylate kinase, GMP k 96.9 0.00039 1.3E-08 53.0 2.7 22 11-32 9-30 (205)
250 3ney_A 55 kDa erythrocyte memb 96.9 0.00043 1.5E-08 52.8 2.7 24 9-32 19-42 (197)
251 1s96_A Guanylate kinase, GMP k 96.9 0.00044 1.5E-08 53.7 2.7 22 11-32 18-39 (219)
252 1znw_A Guanylate kinase, GMP k 96.9 0.00045 1.5E-08 53.0 2.7 22 11-32 22-43 (207)
253 1ex7_A Guanylate kinase; subst 96.9 0.00053 1.8E-08 51.8 2.9 21 12-32 4-24 (186)
254 1z6g_A Guanylate kinase; struc 96.8 0.00051 1.7E-08 53.3 2.7 22 11-32 25-46 (218)
255 3tau_A Guanylate kinase, GMP k 96.8 0.00055 1.9E-08 52.6 2.7 22 11-32 10-31 (208)
256 3c8u_A Fructokinase; YP_612366 96.8 0.00073 2.5E-08 51.9 3.2 25 7-31 20-44 (208)
257 1htw_A HI0065; nucleotide-bind 96.8 0.0007 2.4E-08 49.7 2.7 23 11-33 35-57 (158)
258 3tif_A Uncharacterized ABC tra 96.7 0.00072 2.4E-08 53.1 2.9 21 11-31 33-53 (235)
259 3lw7_A Adenylate kinase relate 96.7 0.00083 2.8E-08 49.5 3.0 20 10-29 2-21 (179)
260 2qor_A Guanylate kinase; phosp 96.7 0.00081 2.8E-08 51.4 2.9 23 10-32 13-35 (204)
261 1kag_A SKI, shikimate kinase I 96.7 0.00084 2.9E-08 49.7 2.8 22 10-31 5-26 (173)
262 2pcj_A ABC transporter, lipopr 96.7 0.00085 2.9E-08 52.3 2.9 21 11-31 32-52 (224)
263 3kb2_A SPBC2 prophage-derived 96.7 0.00093 3.2E-08 49.3 3.0 21 11-31 3-23 (173)
264 3fb4_A Adenylate kinase; psych 96.7 0.0009 3.1E-08 51.5 2.9 22 10-31 1-22 (216)
265 2bbw_A Adenylate kinase 4, AK4 96.7 0.00098 3.3E-08 52.5 3.1 21 10-30 28-48 (246)
266 3dl0_A Adenylate kinase; phosp 96.7 0.00093 3.2E-08 51.4 2.9 22 10-31 1-22 (216)
267 2rcn_A Probable GTPase ENGC; Y 96.7 0.00091 3.1E-08 55.8 3.0 24 11-34 217-240 (358)
268 2bdt_A BH3686; alpha-beta prot 96.6 0.00091 3.1E-08 50.3 2.8 21 11-31 4-24 (189)
269 2j41_A Guanylate kinase; GMP, 96.6 0.00087 3E-08 51.1 2.7 23 10-32 7-29 (207)
270 2i3b_A HCR-ntpase, human cance 96.6 0.00084 2.9E-08 50.9 2.5 21 11-31 3-23 (189)
271 2onk_A Molybdate/tungstate ABC 96.6 0.00097 3.3E-08 52.5 3.0 22 11-32 26-47 (240)
272 3sr0_A Adenylate kinase; phosp 96.6 0.001 3.5E-08 51.1 3.0 22 10-31 1-22 (206)
273 1ly1_A Polynucleotide kinase; 96.6 0.0012 4.2E-08 49.0 3.3 22 10-31 3-24 (181)
274 3asz_A Uridine kinase; cytidin 96.6 0.0012 4E-08 50.7 3.2 24 8-31 5-28 (211)
275 1sgw_A Putative ABC transporte 96.6 0.0011 3.7E-08 51.3 2.9 22 11-32 37-58 (214)
276 3co5_A Putative two-component 96.6 0.0029 1E-07 45.4 5.1 24 9-32 27-50 (143)
277 1b0u_A Histidine permease; ABC 96.6 0.0011 3.6E-08 53.0 2.9 22 11-32 34-55 (262)
278 4eun_A Thermoresistant glucoki 96.6 0.001 3.5E-08 50.7 2.7 22 10-31 30-51 (200)
279 3gfo_A Cobalt import ATP-bindi 96.6 0.0011 3.7E-08 53.3 2.9 21 11-31 36-56 (275)
280 3ec2_A DNA replication protein 96.6 0.00099 3.4E-08 49.8 2.4 22 10-31 39-60 (180)
281 1g6h_A High-affinity branched- 96.6 0.0011 3.9E-08 52.7 2.9 22 11-32 35-56 (257)
282 2cbz_A Multidrug resistance-as 96.6 0.0013 4.3E-08 51.8 3.1 22 11-32 33-54 (237)
283 4g1u_C Hemin import ATP-bindin 96.6 0.0012 4E-08 52.9 2.9 22 11-32 39-60 (266)
284 1mv5_A LMRA, multidrug resista 96.6 0.0013 4.5E-08 51.9 3.2 22 11-32 30-51 (243)
285 2eyu_A Twitching motility prot 96.5 0.0011 3.8E-08 52.9 2.7 21 11-31 27-47 (261)
286 3vaa_A Shikimate kinase, SK; s 96.5 0.0013 4.6E-08 49.9 3.1 22 10-31 26-47 (199)
287 2jaq_A Deoxyguanosine kinase; 96.5 0.0013 4.5E-08 49.9 3.0 21 11-31 2-22 (205)
288 2pze_A Cystic fibrosis transme 96.5 0.0014 4.8E-08 51.2 3.2 22 11-32 36-57 (229)
289 2ff7_A Alpha-hemolysin translo 96.5 0.0014 4.7E-08 51.9 3.1 22 11-32 37-58 (247)
290 3b85_A Phosphate starvation-in 96.5 0.00099 3.4E-08 51.3 2.2 22 11-32 24-45 (208)
291 1nks_A Adenylate kinase; therm 96.5 0.0015 5.2E-08 49.0 3.2 21 11-31 3-23 (194)
292 2if2_A Dephospho-COA kinase; a 96.5 0.0013 4.4E-08 50.1 2.8 22 10-31 2-23 (204)
293 2olj_A Amino acid ABC transpor 96.5 0.0013 4.5E-08 52.5 2.9 22 11-32 52-73 (263)
294 2qi9_C Vitamin B12 import ATP- 96.5 0.0013 4.5E-08 52.0 2.9 22 11-32 28-49 (249)
295 1ji0_A ABC transporter; ATP bi 96.5 0.0013 4.5E-08 51.8 2.9 22 11-32 34-55 (240)
296 1qhx_A CPT, protein (chloramph 96.5 0.0014 4.7E-08 48.7 2.8 21 11-31 5-25 (178)
297 1vpl_A ABC transporter, ATP-bi 96.5 0.0014 4.7E-08 52.2 2.9 22 11-32 43-64 (256)
298 1e4v_A Adenylate kinase; trans 96.5 0.0014 4.8E-08 50.5 2.9 22 10-31 1-22 (214)
299 2v9p_A Replication protein E1; 96.5 0.0014 4.7E-08 53.5 2.9 21 11-31 128-148 (305)
300 2ghi_A Transport protein; mult 96.5 0.0016 5.4E-08 51.9 3.1 22 11-32 48-69 (260)
301 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0015 5.1E-08 51.8 2.9 22 11-32 31-52 (250)
302 2ehv_A Hypothetical protein PH 96.5 0.0015 5E-08 51.3 2.9 20 11-30 32-51 (251)
303 3cm0_A Adenylate kinase; ATP-b 96.4 0.0018 6.2E-08 48.4 3.3 23 9-31 4-26 (186)
304 1np6_A Molybdopterin-guanine d 96.4 0.0016 5.5E-08 48.6 2.9 22 10-31 7-28 (174)
305 1jjv_A Dephospho-COA kinase; P 96.4 0.0019 6.5E-08 49.3 3.3 22 10-31 3-24 (206)
306 3t61_A Gluconokinase; PSI-biol 96.4 0.0015 5.2E-08 49.7 2.8 22 10-31 19-40 (202)
307 2ihy_A ABC transporter, ATP-bi 96.4 0.0017 5.8E-08 52.3 3.2 22 11-32 49-70 (279)
308 2ixe_A Antigen peptide transpo 96.4 0.0015 5.3E-08 52.3 2.9 22 11-32 47-68 (271)
309 2zu0_C Probable ATP-dependent 96.4 0.0016 5.5E-08 52.1 3.0 22 11-32 48-69 (267)
310 1kht_A Adenylate kinase; phosp 96.4 0.0017 5.8E-08 48.7 3.0 22 10-31 4-25 (192)
311 3trf_A Shikimate kinase, SK; a 96.4 0.0017 6E-08 48.5 3.0 22 10-31 6-27 (185)
312 2nq2_C Hypothetical ABC transp 96.4 0.0016 5.5E-08 51.7 2.9 22 11-32 33-54 (253)
313 1u0l_A Probable GTPase ENGC; p 96.4 0.0019 6.5E-08 52.6 3.4 23 11-33 171-193 (301)
314 2yv5_A YJEQ protein; hydrolase 96.4 0.0016 5.4E-08 53.1 2.9 20 11-30 167-186 (302)
315 1cke_A CK, MSSA, protein (cyti 96.4 0.0018 6.1E-08 50.2 3.0 22 10-31 6-27 (227)
316 3lnc_A Guanylate kinase, GMP k 96.4 0.0011 3.7E-08 51.7 1.7 22 11-32 29-51 (231)
317 2yz2_A Putative ABC transporte 96.4 0.0017 5.9E-08 51.9 2.9 22 11-32 35-56 (266)
318 2rhm_A Putative kinase; P-loop 96.3 0.0021 7.3E-08 48.3 3.2 22 10-31 6-27 (193)
319 3iij_A Coilin-interacting nucl 96.3 0.002 7E-08 48.0 3.0 23 9-31 11-33 (180)
320 4a74_A DNA repair and recombin 96.3 0.0017 5.8E-08 50.3 2.6 21 11-31 27-47 (231)
321 1aky_A Adenylate kinase; ATP:A 96.3 0.0021 7.1E-08 49.6 3.1 23 9-31 4-26 (220)
322 3uie_A Adenylyl-sulfate kinase 96.3 0.0019 6.4E-08 49.2 2.8 23 9-31 25-47 (200)
323 2cdn_A Adenylate kinase; phosp 96.3 0.0024 8.3E-08 48.5 3.4 25 7-31 18-42 (201)
324 2pjz_A Hypothetical protein ST 96.3 0.0022 7.4E-08 51.2 3.2 23 11-33 32-54 (263)
325 2f1r_A Molybdopterin-guanine d 96.3 0.0011 3.7E-08 49.4 1.3 21 11-31 4-24 (171)
326 2pt5_A Shikimate kinase, SK; a 96.3 0.0022 7.7E-08 47.1 3.0 22 10-31 1-22 (168)
327 3aez_A Pantothenate kinase; tr 96.3 0.0019 6.6E-08 52.9 2.7 26 6-31 87-112 (312)
328 2xb4_A Adenylate kinase; ATP-b 96.3 0.0022 7.7E-08 49.7 3.0 22 10-31 1-22 (223)
329 1y63_A LMAJ004144AAA protein; 96.3 0.0027 9.1E-08 47.6 3.3 23 9-31 10-32 (184)
330 1via_A Shikimate kinase; struc 96.3 0.0021 7.1E-08 47.7 2.6 21 11-31 6-26 (175)
331 3tlx_A Adenylate kinase 2; str 96.2 0.0027 9.2E-08 50.0 3.3 24 8-31 28-51 (243)
332 1zd8_A GTP:AMP phosphotransfer 96.2 0.0023 7.9E-08 49.7 2.9 22 10-31 8-29 (227)
333 1lw7_A Transcriptional regulat 96.2 0.002 6.8E-08 54.0 2.7 23 9-31 170-192 (365)
334 2plr_A DTMP kinase, probable t 96.2 0.0027 9.4E-08 48.4 3.3 22 10-31 5-26 (213)
335 3nh6_A ATP-binding cassette SU 96.2 0.0017 5.9E-08 52.9 2.2 21 11-31 82-102 (306)
336 1gvn_B Zeta; postsegregational 96.2 0.003 1E-07 51.0 3.6 25 7-31 31-55 (287)
337 2kjq_A DNAA-related protein; s 96.2 0.0017 6E-08 47.0 1.9 21 11-31 38-58 (149)
338 1jbk_A CLPB protein; beta barr 96.2 0.0028 9.5E-08 47.2 3.1 22 10-31 44-65 (195)
339 2wwf_A Thymidilate kinase, put 96.2 0.0036 1.2E-07 47.8 3.8 23 9-31 10-32 (212)
340 1tev_A UMP-CMP kinase; ploop, 96.2 0.003 1E-07 47.4 3.3 22 10-31 4-25 (196)
341 3umf_A Adenylate kinase; rossm 96.2 0.0039 1.3E-07 48.2 3.9 20 12-31 32-51 (217)
342 2x8a_A Nuclear valosin-contain 96.2 0.0023 7.7E-08 51.4 2.7 20 12-31 47-66 (274)
343 1uf9_A TT1252 protein; P-loop, 96.2 0.0032 1.1E-07 47.7 3.5 27 6-32 5-31 (203)
344 2bbs_A Cystic fibrosis transme 96.2 0.0027 9.1E-08 51.5 3.1 22 11-32 66-87 (290)
345 3fvq_A Fe(3+) IONS import ATP- 96.2 0.0025 8.6E-08 53.1 2.9 22 11-32 32-53 (359)
346 1ukz_A Uridylate kinase; trans 96.2 0.0041 1.4E-07 47.2 3.9 24 8-31 14-37 (203)
347 3jvv_A Twitching mobility prot 96.2 0.0024 8.1E-08 53.3 2.7 21 11-31 125-145 (356)
348 1zak_A Adenylate kinase; ATP:A 96.1 0.0023 7.9E-08 49.5 2.5 22 10-31 6-27 (222)
349 2qt1_A Nicotinamide riboside k 96.1 0.0037 1.3E-07 47.7 3.5 24 9-32 21-44 (207)
350 3be4_A Adenylate kinase; malar 96.1 0.0029 1E-07 48.8 2.9 22 10-31 6-27 (217)
351 1ixz_A ATP-dependent metallopr 96.1 0.0027 9.1E-08 50.2 2.7 21 11-31 51-71 (254)
352 1qf9_A UMP/CMP kinase, protein 96.1 0.0043 1.5E-07 46.4 3.8 22 10-31 7-28 (194)
353 1xjc_A MOBB protein homolog; s 96.1 0.0034 1.2E-07 46.5 3.1 22 10-31 5-26 (169)
354 2yvu_A Probable adenylyl-sulfa 96.1 0.0045 1.5E-07 46.3 3.8 24 8-31 12-35 (186)
355 2v54_A DTMP kinase, thymidylat 96.1 0.0032 1.1E-07 47.8 3.0 24 9-32 4-27 (204)
356 1z47_A CYSA, putative ABC-tran 96.1 0.0029 1E-07 52.7 2.9 22 11-32 43-64 (355)
357 1rj9_A FTSY, signal recognitio 96.1 0.0028 9.5E-08 51.7 2.7 21 10-30 103-123 (304)
358 3tui_C Methionine import ATP-b 96.1 0.0031 1E-07 52.7 3.0 21 11-31 56-76 (366)
359 2jeo_A Uridine-cytidine kinase 96.1 0.0037 1.3E-07 49.2 3.3 24 8-31 24-47 (245)
360 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0031 1.1E-07 52.1 2.9 22 11-32 173-194 (330)
361 2c95_A Adenylate kinase 1; tra 96.0 0.0034 1.2E-07 47.3 2.9 23 9-31 9-31 (196)
362 2pbr_A DTMP kinase, thymidylat 96.0 0.0034 1.2E-07 47.1 2.9 21 11-31 2-22 (195)
363 2yyz_A Sugar ABC transporter, 96.0 0.0031 1.1E-07 52.6 2.9 21 11-31 31-51 (359)
364 2gza_A Type IV secretion syste 96.0 0.0028 9.4E-08 53.1 2.6 22 11-32 177-198 (361)
365 2it1_A 362AA long hypothetical 96.0 0.0033 1.1E-07 52.5 3.0 22 11-32 31-52 (362)
366 3b9q_A Chloroplast SRP recepto 96.0 0.0031 1.1E-07 51.4 2.7 22 10-31 101-122 (302)
367 2ewv_A Twitching motility prot 96.0 0.0032 1.1E-07 52.9 2.9 21 11-31 138-158 (372)
368 3rlf_A Maltose/maltodextrin im 96.0 0.0034 1.2E-07 52.7 3.0 21 11-31 31-51 (381)
369 2bwj_A Adenylate kinase 5; pho 96.0 0.0037 1.3E-07 47.1 2.9 22 10-31 13-34 (199)
370 1v43_A Sugar-binding transport 96.0 0.0036 1.2E-07 52.5 3.0 21 11-31 39-59 (372)
371 1g29_1 MALK, maltose transport 96.0 0.0035 1.2E-07 52.6 2.9 22 11-32 31-52 (372)
372 1ak2_A Adenylate kinase isoenz 96.0 0.0038 1.3E-07 48.7 3.0 23 9-31 16-38 (233)
373 1gtv_A TMK, thymidylate kinase 96.0 0.0017 5.7E-08 49.8 0.8 21 11-31 2-22 (214)
374 2ze6_A Isopentenyl transferase 96.0 0.0037 1.3E-07 49.5 2.8 21 11-31 3-23 (253)
375 2z0h_A DTMP kinase, thymidylat 95.9 0.004 1.4E-07 46.9 2.9 21 11-31 2-22 (197)
376 2p65_A Hypothetical protein PF 95.9 0.003 1E-07 46.8 2.2 23 9-31 43-65 (187)
377 3kta_A Chromosome segregation 95.9 0.004 1.4E-07 46.4 2.9 21 11-31 28-48 (182)
378 4e22_A Cytidylate kinase; P-lo 95.9 0.0042 1.4E-07 49.2 3.1 21 10-30 28-48 (252)
379 2p5t_B PEZT; postsegregational 95.9 0.0035 1.2E-07 49.6 2.6 26 6-31 29-54 (253)
380 1rz3_A Hypothetical protein rb 95.9 0.0049 1.7E-07 46.9 3.3 25 7-31 20-44 (201)
381 1zcb_A G alpha I/13; GTP-bindi 95.9 0.0047 1.6E-07 51.6 3.5 50 122-171 204-263 (362)
382 1iy2_A ATP-dependent metallopr 95.9 0.0038 1.3E-07 50.1 2.7 21 11-31 75-95 (278)
383 3d31_A Sulfate/molybdate ABC t 95.9 0.0029 1E-07 52.6 2.1 22 11-32 28-49 (348)
384 1p9r_A General secretion pathw 95.9 0.0037 1.3E-07 53.3 2.7 21 11-31 169-189 (418)
385 1e6c_A Shikimate kinase; phosp 95.9 0.0044 1.5E-07 45.6 2.8 21 11-31 4-24 (173)
386 1in4_A RUVB, holliday junction 95.9 0.0037 1.3E-07 51.6 2.7 21 11-31 53-73 (334)
387 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0049 1.7E-07 49.0 3.3 22 10-31 5-26 (260)
388 1odf_A YGR205W, hypothetical 3 95.9 0.0055 1.9E-07 49.6 3.6 25 7-31 29-53 (290)
389 3tqc_A Pantothenate kinase; bi 95.9 0.0057 2E-07 50.2 3.7 25 7-31 90-114 (321)
390 1sq5_A Pantothenate kinase; P- 95.9 0.0052 1.8E-07 50.2 3.5 25 7-31 78-102 (308)
391 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.0043 1.5E-07 47.9 2.9 21 11-31 25-45 (235)
392 1zuh_A Shikimate kinase; alpha 95.9 0.005 1.7E-07 45.2 3.1 22 10-31 8-29 (168)
393 1nn5_A Similar to deoxythymidy 95.9 0.0045 1.5E-07 47.3 2.9 23 9-31 9-31 (215)
394 4ido_A Atlastin-1; GTPase, GTP 95.8 0.02 6.9E-07 49.0 7.0 65 6-70 64-152 (457)
395 3bos_A Putative DNA replicatio 95.8 0.0049 1.7E-07 47.8 3.0 23 9-31 52-74 (242)
396 2oap_1 GSPE-2, type II secreti 95.8 0.004 1.4E-07 54.5 2.8 22 11-32 262-283 (511)
397 1vht_A Dephospho-COA kinase; s 95.8 0.0062 2.1E-07 46.8 3.5 23 9-31 4-26 (218)
398 2vp4_A Deoxynucleoside kinase; 95.8 0.0066 2.2E-07 47.3 3.6 26 7-32 18-43 (230)
399 2iyv_A Shikimate kinase, SK; t 95.8 0.0049 1.7E-07 46.0 2.8 21 11-31 4-24 (184)
400 1lv7_A FTSH; alpha/beta domain 95.8 0.0051 1.7E-07 48.6 3.0 22 10-31 46-67 (257)
401 2vli_A Antibiotic resistance p 95.8 0.0038 1.3E-07 46.5 2.1 22 10-31 6-27 (183)
402 2pez_A Bifunctional 3'-phospho 95.8 0.0058 2E-07 45.4 3.1 23 9-31 5-27 (179)
403 3gd7_A Fusion complex of cysti 95.8 0.0048 1.6E-07 52.1 2.9 21 11-31 49-69 (390)
404 2w58_A DNAI, primosome compone 95.8 0.0053 1.8E-07 46.5 2.9 22 10-31 55-76 (202)
405 2og2_A Putative signal recogni 95.7 0.0049 1.7E-07 51.4 2.7 22 10-31 158-179 (359)
406 1uj2_A Uridine-cytidine kinase 95.7 0.0065 2.2E-07 48.0 3.3 25 7-31 20-44 (252)
407 1f2t_A RAD50 ABC-ATPase; DNA d 95.7 0.006 2.1E-07 44.1 2.9 19 12-30 26-44 (149)
408 1oxx_K GLCV, glucose, ABC tran 95.7 0.003 1E-07 52.7 1.3 22 11-32 33-54 (353)
409 3nwj_A ATSK2; P loop, shikimat 95.7 0.0051 1.7E-07 48.7 2.6 22 10-31 49-70 (250)
410 1tue_A Replication protein E1; 95.6 0.0046 1.6E-07 47.2 2.1 21 11-31 60-80 (212)
411 2obl_A ESCN; ATPase, hydrolase 95.6 0.0059 2E-07 50.7 2.9 22 11-32 73-94 (347)
412 2yhs_A FTSY, cell division pro 95.6 0.0057 1.9E-07 53.1 2.7 21 10-30 294-314 (503)
413 3r20_A Cytidylate kinase; stru 95.6 0.0069 2.4E-07 47.3 3.0 23 9-31 9-31 (233)
414 1cr0_A DNA primase/helicase; R 95.6 0.0058 2E-07 49.4 2.6 21 11-31 37-57 (296)
415 4eaq_A DTMP kinase, thymidylat 95.6 0.0067 2.3E-07 47.3 2.8 24 8-31 25-48 (229)
416 2cvh_A DNA repair and recombin 95.5 0.0069 2.4E-07 46.4 2.9 21 11-31 22-42 (220)
417 1m7g_A Adenylylsulfate kinase; 95.5 0.0068 2.3E-07 46.4 2.8 23 9-31 25-47 (211)
418 1n0w_A DNA repair protein RAD5 95.5 0.007 2.4E-07 47.1 2.9 21 11-31 26-46 (243)
419 3n70_A Transport activator; si 95.5 0.0068 2.3E-07 43.5 2.6 25 8-32 23-47 (145)
420 1nij_A Hypothetical protein YJ 95.5 0.0052 1.8E-07 50.4 2.2 23 10-32 5-27 (318)
421 2npi_A Protein CLP1; CLP1-PCF1 95.5 0.006 2E-07 52.7 2.4 21 11-31 140-160 (460)
422 4dzz_A Plasmid partitioning pr 95.5 0.11 3.7E-06 39.1 9.4 67 57-127 75-143 (206)
423 1njg_A DNA polymerase III subu 95.5 0.0071 2.4E-07 46.6 2.7 21 11-31 47-67 (250)
424 2chg_A Replication factor C sm 95.4 0.0081 2.8E-07 45.7 2.9 21 11-31 40-60 (226)
425 2grj_A Dephospho-COA kinase; T 95.4 0.011 3.9E-07 44.7 3.4 25 7-31 10-34 (192)
426 3h4m_A Proteasome-activating n 95.4 0.0086 3E-07 48.0 3.0 23 9-31 51-73 (285)
427 1ltq_A Polynucleotide kinase; 95.4 0.0082 2.8E-07 48.6 2.8 22 10-31 3-24 (301)
428 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.0095 3.3E-07 47.0 3.1 23 9-31 39-61 (262)
429 2f6r_A COA synthase, bifunctio 95.3 0.014 4.9E-07 46.8 4.1 23 8-30 74-96 (281)
430 3b9p_A CG5977-PA, isoform A; A 95.3 0.0094 3.2E-07 48.1 3.0 23 9-31 54-76 (297)
431 2dpy_A FLII, flagellum-specifi 95.3 0.0089 3E-07 51.3 2.9 22 11-32 159-180 (438)
432 3t15_A Ribulose bisphosphate c 95.2 0.013 4.4E-07 47.4 3.6 22 10-31 37-58 (293)
433 1svm_A Large T antigen; AAA+ f 95.2 0.0088 3E-07 50.2 2.7 22 10-31 170-191 (377)
434 3syl_A Protein CBBX; photosynt 95.2 0.012 4.1E-07 47.7 3.5 25 7-31 65-89 (309)
435 3qf7_A RAD50; ABC-ATPase, ATPa 95.2 0.01 3.6E-07 49.6 2.9 19 12-30 26-44 (365)
436 3b60_A Lipid A export ATP-bind 95.1 0.011 3.7E-07 52.7 3.1 22 11-32 371-392 (582)
437 3cf0_A Transitional endoplasmi 95.1 0.01 3.5E-07 48.2 2.7 22 10-31 50-71 (301)
438 3euj_A Chromosome partition pr 95.1 0.0098 3.3E-07 51.5 2.7 20 11-30 31-50 (483)
439 4fcw_A Chaperone protein CLPB; 95.1 0.015 5E-07 47.2 3.7 23 9-31 47-69 (311)
440 1yqt_A RNAse L inhibitor; ATP- 95.1 0.015 5E-07 51.4 3.9 22 11-32 49-70 (538)
441 1l8q_A Chromosomal replication 95.1 0.0099 3.4E-07 48.7 2.6 22 10-31 38-59 (324)
442 2qmh_A HPR kinase/phosphorylas 95.1 0.012 4.3E-07 44.6 2.9 23 10-32 35-57 (205)
443 3gmt_A Adenylate kinase; ssgci 95.1 0.012 4.3E-07 45.7 3.0 25 7-31 6-30 (230)
444 1nlf_A Regulatory protein REPA 95.1 0.011 3.8E-07 47.3 2.8 21 11-31 32-52 (279)
445 2dr3_A UPF0273 protein PH0284; 95.1 0.012 4.1E-07 45.9 2.9 21 11-31 25-45 (247)
446 3ozx_A RNAse L inhibitor; ATP 95.1 0.014 4.9E-07 51.4 3.6 22 11-32 27-48 (538)
447 3a8t_A Adenylate isopentenyltr 95.0 0.017 5.8E-07 47.6 3.7 21 11-31 42-62 (339)
448 1d2n_A N-ethylmaleimide-sensit 95.0 0.018 6E-07 45.9 3.8 25 7-31 62-86 (272)
449 3b5x_A Lipid A export ATP-bind 95.0 0.012 4.2E-07 52.3 3.1 22 11-32 371-392 (582)
450 2qby_A CDC6 homolog 1, cell di 95.0 0.011 3.9E-07 49.1 2.7 23 9-31 45-67 (386)
451 1ofh_A ATP-dependent HSL prote 94.9 0.013 4.4E-07 47.4 2.8 23 9-31 50-72 (310)
452 3j16_B RLI1P; ribosome recycli 94.9 0.016 5.6E-07 51.8 3.6 22 11-32 105-126 (608)
453 2px0_A Flagellar biosynthesis 94.9 0.014 4.8E-07 47.3 3.0 21 10-30 106-126 (296)
454 2ga8_A Hypothetical 39.9 kDa p 94.9 0.019 6.5E-07 47.7 3.7 24 7-30 22-45 (359)
455 1fnn_A CDC6P, cell division co 94.9 0.014 4.8E-07 48.8 3.0 22 11-32 46-67 (389)
456 2yl4_A ATP-binding cassette SU 94.9 0.011 3.9E-07 52.8 2.5 22 11-32 372-393 (595)
457 3qf4_B Uncharacterized ABC tra 94.8 0.012 4.2E-07 52.5 2.6 21 11-31 383-403 (598)
458 1sxj_E Activator 1 40 kDa subu 94.8 0.012 4.1E-07 48.7 2.4 21 11-31 38-58 (354)
459 1q3t_A Cytidylate kinase; nucl 94.8 0.017 5.9E-07 45.0 3.2 24 8-31 15-38 (236)
460 3qks_A DNA double-strand break 94.8 0.016 5.5E-07 44.2 2.9 19 12-30 26-44 (203)
461 4a82_A Cystic fibrosis transme 94.8 0.011 3.6E-07 52.7 2.1 21 11-31 369-389 (578)
462 1azs_C GS-alpha; complex (lyas 94.8 0.021 7.2E-07 48.3 3.7 106 121-226 219-388 (402)
463 3eie_A Vacuolar protein sortin 94.8 0.016 5.5E-07 47.5 3.0 23 9-31 51-73 (322)
464 3u61_B DNA polymerase accessor 94.8 0.13 4.5E-06 41.8 8.5 20 12-31 51-70 (324)
465 2qgz_A Helicase loader, putati 94.7 0.017 5.7E-07 47.2 3.0 23 9-31 152-174 (308)
466 3bk7_A ABC transporter ATP-bin 94.7 0.021 7.1E-07 51.1 3.8 22 11-32 119-140 (607)
467 3crm_A TRNA delta(2)-isopenten 94.7 0.017 6E-07 47.3 3.1 22 10-31 6-27 (323)
468 3zvl_A Bifunctional polynucleo 94.7 0.024 8.1E-07 48.3 4.0 23 9-31 258-280 (416)
469 1xwi_A SKD1 protein; VPS4B, AA 94.7 0.017 5.7E-07 47.4 3.0 23 10-32 46-68 (322)
470 4b4t_K 26S protease regulatory 94.7 0.016 5.4E-07 49.5 2.9 22 10-31 207-228 (428)
471 1pzn_A RAD51, DNA repair and r 94.7 0.016 5.4E-07 48.2 2.8 22 11-32 133-154 (349)
472 1sxj_C Activator 1 40 kDa subu 94.7 0.015 5.1E-07 48.0 2.6 22 11-32 48-69 (340)
473 3pxg_A Negative regulator of g 94.7 0.016 5.4E-07 50.2 2.9 22 10-31 202-223 (468)
474 3ake_A Cytidylate kinase; CMP 94.7 0.019 6.5E-07 43.5 3.0 21 11-31 4-24 (208)
475 3qf4_A ABC transporter, ATP-bi 94.7 0.014 4.9E-07 52.0 2.6 21 11-31 371-391 (587)
476 1yqt_A RNAse L inhibitor; ATP- 94.6 0.024 8.1E-07 50.0 3.9 22 11-32 314-335 (538)
477 4b4t_M 26S protease regulatory 94.6 0.017 5.8E-07 49.4 2.8 23 9-31 215-237 (434)
478 3ozx_A RNAse L inhibitor; ATP 94.6 0.022 7.7E-07 50.1 3.6 22 11-32 296-317 (538)
479 3foz_A TRNA delta(2)-isopenten 94.6 0.025 8.5E-07 46.0 3.6 22 10-31 11-32 (316)
480 1p5z_B DCK, deoxycytidine kina 94.6 0.017 5.8E-07 45.8 2.6 24 8-31 23-46 (263)
481 3uk6_A RUVB-like 2; hexameric 94.5 0.019 6.6E-07 47.7 3.0 22 10-31 71-92 (368)
482 3bk7_A ABC transporter ATP-bin 94.5 0.026 8.8E-07 50.5 3.9 22 11-32 384-405 (607)
483 2v1u_A Cell division control p 94.5 0.016 5.3E-07 48.3 2.4 24 8-31 43-66 (387)
484 4b4t_L 26S protease subunit RP 94.5 0.019 6.4E-07 49.1 2.8 23 9-31 215-237 (437)
485 1sxj_D Activator 1 41 kDa subu 94.5 0.018 6.2E-07 47.5 2.7 21 11-31 60-80 (353)
486 2r62_A Cell division protease 94.5 0.0088 3E-07 47.5 0.7 21 11-31 46-66 (268)
487 3exa_A TRNA delta(2)-isopenten 94.5 0.02 7E-07 46.6 2.8 22 11-32 5-26 (322)
488 3d3q_A TRNA delta(2)-isopenten 94.5 0.02 6.8E-07 47.3 2.8 22 10-31 8-29 (340)
489 2r44_A Uncharacterized protein 94.4 0.014 4.8E-07 47.9 1.8 21 11-31 48-68 (331)
490 3j16_B RLI1P; ribosome recycli 94.3 0.022 7.4E-07 51.0 3.0 21 12-32 381-401 (608)
491 2qen_A Walker-type ATPase; unk 94.3 0.023 7.7E-07 46.6 2.9 22 11-32 33-54 (350)
492 4b4t_J 26S protease regulatory 94.3 0.022 7.5E-07 48.1 2.8 23 9-31 182-204 (405)
493 3ch4_B Pmkase, phosphomevalona 94.3 0.041 1.4E-06 41.8 4.0 31 1-31 3-33 (202)
494 3te6_A Regulatory protein SIR3 94.3 0.018 6.2E-07 47.1 2.2 24 8-31 44-67 (318)
495 2bjv_A PSP operon transcriptio 94.3 0.023 8E-07 45.0 2.8 24 9-32 29-52 (265)
496 3pfi_A Holliday junction ATP-d 94.3 0.023 8E-07 46.6 2.9 24 8-31 54-77 (338)
497 1tf7_A KAIC; homohexamer, hexa 94.3 0.022 7.4E-07 50.1 2.8 19 11-29 41-59 (525)
498 1um8_A ATP-dependent CLP prote 94.3 0.021 7.2E-07 47.8 2.6 23 9-31 72-94 (376)
499 3d8b_A Fidgetin-like protein 1 94.2 0.025 8.6E-07 47.1 3.0 23 9-31 117-139 (357)
500 2qp9_X Vacuolar protein sortin 94.2 0.023 7.9E-07 47.3 2.8 22 10-31 85-106 (355)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=8.1e-43 Score=274.80 Aligned_cols=195 Identities=39% Similarity=0.650 Sum_probs=144.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
..+||+|+|++|||||||+++|..+.|...+.||++.++....+.+++..+.+.+|||+|+++|..++..++++++++|+
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
|||++++++|+.+..|+..+......++|++|||||+|+.
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~---------------------------------------- 131 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA---------------------------------------- 131 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG----------------------------------------
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH----------------------------------------
Confidence 9999999999999999999998887899999999999997
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCC-CCeEeecCCCCCC
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEA-PDRVTIDKKPDRG 246 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 246 (253)
..+. +..++++++++++++++++|||++|.||+++|..|++.+...+........ ...+.....+++.
T Consensus 132 ------~~r~-----V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (216)
T 4dkx_A 132 ------DKRQ-----VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQP 200 (216)
T ss_dssp ------GGCC-----SCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC--------------------------
T ss_pred ------hcCc-----ccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCC
Confidence 3343 777889999999999999999999999999999999998765544333222 2233333333333
Q ss_pred CCCCCCC
Q psy9621 247 GMAGGCC 253 (253)
Q Consensus 247 ~~~~~c~ 253 (253)
+++++||
T Consensus 201 ~~~~~C~ 207 (216)
T 4dkx_A 201 VSEGGCS 207 (216)
T ss_dssp -------
T ss_pred CCCCCCc
Confidence 3355554
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=5.4e-36 Score=234.55 Aligned_cols=174 Identities=52% Similarity=0.896 Sum_probs=155.0
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR 80 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (253)
|+. .++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++
T Consensus 1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (206)
T 2bcg_Y 1 MNS-EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR 79 (206)
T ss_dssp --C-CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred CCc-ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence 554 4677899999999999999999999999998888899998998888888888899999999999999999999999
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
.+|++|+|||++++.++..+..|+..+......++|+++|+||+|+.
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--------------------------------- 126 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK--------------------------------- 126 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT---------------------------------
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc---------------------------------
Confidence 99999999999999999999999999988776789999999999996
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +..++..++++.++++++++||++|.|++++|..|.+.+.+...
T Consensus 127 -------------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 174 (206)
T 2bcg_Y 127 -------------DKRV-----VEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174 (206)
T ss_dssp -------------TTCC-----SCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred -------------cccc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 2222 45566788888899999999999999999999999999877654
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-35 Score=231.28 Aligned_cols=172 Identities=46% Similarity=0.798 Sum_probs=143.7
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
.+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.|..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 36679999999999999999999999999888889999888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
|+|||++++.+++.+..|+..+......++|+++|+||+|+.
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-------------------------------------- 131 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA-------------------------------------- 131 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG--------------------------------------
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc--------------------------------------
Confidence 999999999999999999999988766789999999999986
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR 228 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 228 (253)
..+. +..++..++++.++++++++||++|.|++++|++|.+.+.++....
T Consensus 132 --------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 181 (223)
T 3cpj_B 132 --------HLRA-----VPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKH 181 (223)
T ss_dssp --------GGCC-----SCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC---
T ss_pred --------cccc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 2222 4456678888889999999999999999999999999998765543
No 4
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.1e-35 Score=231.08 Aligned_cols=173 Identities=35% Similarity=0.629 Sum_probs=147.6
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR 80 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (253)
|.. ..+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++
T Consensus 1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (207)
T 1vg8_A 1 MTS-RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR 79 (207)
T ss_dssp -------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGT
T ss_pred CCc-ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHh
Confidence 544 4567899999999999999999999999988888899998888888888888899999999999999999999999
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcc----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK 156 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (253)
.+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----------------------------- 130 (207)
T 1vg8_A 80 GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE----------------------------- 130 (207)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-----------------------------
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-----------------------------
Confidence 99999999999999999999999999877653 579999999999985
Q ss_pred chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH-HhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-EYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
. +. ...+...++++ ..+++++++||++|.|++++|++|.+.+.+...
T Consensus 131 -----------------~-~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 131 -----------------N-RQ-----VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178 (207)
T ss_dssp -----------------C-CC-----SCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred -----------------c-cc-----cCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 1 11 33455667776 567899999999999999999999999877553
No 5
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-34 Score=223.89 Aligned_cols=172 Identities=47% Similarity=0.822 Sum_probs=154.3
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
..++..+||+|+|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 45677899999999999999999999999998888899999998888888988899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++|+|||++++.++..+..|+..+......++|+++|+||+|+.
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~------------------------------------ 144 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA------------------------------------ 144 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG------------------------------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc------------------------------------
Confidence 99999999999999999999999988876789999999999986
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +..++.+++++..+++++++||++|.|++++|..|.+.+.++..
T Consensus 145 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 145 ----------ERRE-----VSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192 (201)
T ss_dssp ----------GGCS-----SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred ----------cccc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 2222 44566778888899999999999999999999999999887653
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=6.8e-35 Score=223.92 Aligned_cols=174 Identities=76% Similarity=1.195 Sum_probs=125.3
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR 80 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (253)
|++ .+++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++
T Consensus 1 M~~-~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (183)
T 2fu5_C 1 MAK-TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 79 (183)
T ss_dssp --C-CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTT
T ss_pred CCc-ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHh
Confidence 443 3577899999999999999999999998888888889988888888888888899999999999999999999999
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
++|++|+|||++++.+++.+..|+..+..+...++|+++|+||+|+.
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--------------------------------- 126 (183)
T 2fu5_C 80 GAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN--------------------------------- 126 (183)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC---------------------------------
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC---------------------------------
Confidence 99999999999999999999999999988766789999999999986
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +..++.+++++.++++++++||++|.|++++|..|.+.+.++..
T Consensus 127 -------------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 127 -------------DKRQ-----VSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp -------------SCCC-----SCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred -------------ccCc-----CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 3222 45567788999999999999999999999999999998877543
No 7
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=5.1e-34 Score=224.27 Aligned_cols=202 Identities=25% Similarity=0.510 Sum_probs=144.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+|+|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.|..++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999988888888888655 355667888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.+++.+. .|+..+..+. .++|+++|+||+|+..++.. .
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~--------------------------------~ 132 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGY--------------------------------L 132 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHH--------------------------------H
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccc--------------------------------c
Confidence 999999999999997 8999988775 58999999999998622110 0
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCCC
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPD 244 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (253)
. . ... .+...+..++++.++. +++++||++|.|++++|+.|.+.+.+.....................
T Consensus 133 ~---~---~~~-----~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~ 201 (212)
T 2j0v_A 133 A---D---HTN-----VITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSI 201 (212)
T ss_dssp H---T---CSS-----CCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC--------------------
T ss_pred c---c---ccC-----CCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEE
Confidence 0 0 000 1456677889999995 99999999999999999999999987655444333222222233444
Q ss_pred CCCCCCCCC
Q psy9621 245 RGGMAGGCC 253 (253)
Q Consensus 245 ~~~~~~~c~ 253 (253)
.++-.+|||
T Consensus 202 ~~~~~~~~~ 210 (212)
T 2j0v_A 202 ASIVCGGCT 210 (212)
T ss_dssp ---------
T ss_pred ehHhhcccc
Confidence 466678888
No 8
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=5.1e-34 Score=222.99 Aligned_cols=170 Identities=29% Similarity=0.526 Sum_probs=147.8
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
+....+||+|+|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 4456799999999999999999999998888888888876553 556778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||++++.++..+..|+..+..... .++|+++|+||+|+.
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~------------------------------------ 132 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE------------------------------------ 132 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG------------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc------------------------------------
Confidence 9999999999999999999999988753 589999999999986
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +..++..++++.++++++++||++|.|++++|++|.+.+..+..
T Consensus 133 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 180 (206)
T 2bov_A 133 ----------DKRQ-----VSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 180 (206)
T ss_dssp ----------GGCC-----SCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred ----------cccc-----ccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHccc
Confidence 2222 45567788888999999999999999999999999999877543
No 9
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=2.2e-33 Score=216.84 Aligned_cols=171 Identities=48% Similarity=0.854 Sum_probs=153.3
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
...+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+...+..+.+.+|||||++.+..++..+++.+|
T Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 96 (189)
T 2gf9_A 17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM 96 (189)
T ss_dssp TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence 45677899999999999999999999999988888889898888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++|+|||++++.+++.+..|+..+......++|+++|+||+|+.
T Consensus 97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------------------------------------ 140 (189)
T 2gf9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE------------------------------------ 140 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG------------------------------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc------------------------------------
Confidence 99999999999999999999999988766789999999999986
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. +..++.+++++.++++++++||++|.|++++|++|.+.+.++.
T Consensus 141 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 141 ----------DERV-----VPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187 (189)
T ss_dssp ----------GGCC-----SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred ----------cccC-----CCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 2222 4456778899999999999999999999999999999987754
No 10
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.2e-33 Score=218.69 Aligned_cols=173 Identities=47% Similarity=0.844 Sum_probs=150.5
Q ss_pred ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCc
Q psy9621 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGA 82 (253)
Q Consensus 3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 82 (253)
....++.+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 34567789999999999999999999999998888888888888888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 83 MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~----------------------------------- 139 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE----------------------------------- 139 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----------------------------------
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-----------------------------------
Confidence 999999999999999999999999988766789999999999986
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +..++.+++++.++++++++||++|.|++++|+.|.+.+.++..
T Consensus 140 -----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 140 -----------SRRD-----VKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQ 187 (191)
T ss_dssp -----------GGCC-----SCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred -----------Cccc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2222 45567788899999999999999999999999999999877543
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=222.10 Aligned_cols=171 Identities=46% Similarity=0.814 Sum_probs=143.9
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
...+..+||+|+|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 35577899999999999999999999999888888889888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++|+|||++++.+++.+..|+..+......++|+++|+||+|+.
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~------------------------------------ 147 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS------------------------------------ 147 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG------------------------------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc------------------------------------
Confidence 99999999999999999999999988776789999999999996
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. +..++.+++++.+++ +++++||++|.|++++|++|.+.+.++.
T Consensus 148 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 148 ----------ELRE-----VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp ----------GGCC-----SCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred ----------cccc-----cCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 2222 455677889999998 9999999999999999999999988754
No 12
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=217.67 Aligned_cols=173 Identities=53% Similarity=0.950 Sum_probs=155.6
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
..+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 34678999999999999999999999999988889999989988888899888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+.
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~------------------------------------- 134 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT------------------------------------- 134 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-------------------------------------
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-------------------------------------
Confidence 9999999999999999999999988877789999999999987
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR 228 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 228 (253)
..+. +.....+++++.++++++++||++|.|++++|++|.+.+.++....
T Consensus 135 ---------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 135 ---------TKKV-----VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG 184 (196)
T ss_dssp ---------TTCC-----SCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC---
T ss_pred ---------cccc-----cCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 3333 5556788899999999999999999999999999999998876543
No 13
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1.3e-33 Score=217.16 Aligned_cols=173 Identities=42% Similarity=0.764 Sum_probs=154.5
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
.++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 56778999999999999999999999999988888999888888888888888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
+|+|||++++.++..+..|+..+......++|+++|+||+|+.
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------------------------------------- 128 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD------------------------------------- 128 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-------------------------------------
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-------------------------------------
Confidence 9999999999999999999999888776789999999999986
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR 228 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 228 (253)
..+. +...+..++++..+++++++||++|.|++++|+.|.+.+.++....
T Consensus 129 ---------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 178 (186)
T 2bme_A 129 ---------ADRE-----VTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG 178 (186)
T ss_dssp ---------GGCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSC
T ss_pred ---------cccc-----cCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 2222 4456678888899999999999999999999999999988765433
No 14
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=2e-33 Score=212.93 Aligned_cols=167 Identities=36% Similarity=0.716 Sum_probs=143.3
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
.++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46689999999999999999999999988888889999888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
|+|||++++.++..+..|+..+......++|+++|+||+|+.
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-------------------------------------- 124 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE-------------------------------------- 124 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG--------------------------------------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc--------------------------------------
Confidence 999999999999999999999888776789999999999986
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..+. +..++.+++++.++++++++||++|.|++++|++|.+.+.+
T Consensus 125 --------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 125 --------KERH-----VSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp --------GGCC-----SCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred --------cccc-----cCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 2222 44567788899999999999999999999999999998764
No 15
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=217.78 Aligned_cols=171 Identities=39% Similarity=0.730 Sum_probs=153.4
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
..++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 45677899999999999999999999999988888899998888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++|+|||++++.++..+..|+..+......++|+++|+||+|+..
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~----------------------------------- 144 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ----------------------------------- 144 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG-----------------------------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc-----------------------------------
Confidence 999999999999999999999999887667899999999999962
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.+. +...+.+.+++.++++++++||++|.|++++|+.|.+.+.++.
T Consensus 145 -----------~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 145 -----------ARE-----VPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp -----------GCC-----SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred -----------ccc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 222 4456678888889999999999999999999999999887754
No 16
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=213.69 Aligned_cols=170 Identities=46% Similarity=0.884 Sum_probs=150.3
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
..+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 56788999999999999999999999998888888999989988888889888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
+|+|||++++.++..+..|+..+.... .++|+++|+||+|+..
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~------------------------------------ 127 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPE------------------------------------ 127 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGG------------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCch------------------------------------
Confidence 999999999999999999999998765 6899999999999862
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
... +.......++..++++++++||++|.|++++|++|.+.+.....
T Consensus 128 ----------~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 128 ----------RKV-----VETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp ----------GCC-----SCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred ----------hcc-----cCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 222 45567788999999999999999999999999999998877553
No 17
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=4e-33 Score=213.23 Aligned_cols=173 Identities=28% Similarity=0.469 Sum_probs=150.5
Q ss_pred ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCc
Q psy9621 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGA 82 (253)
Q Consensus 3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 82 (253)
..+....+||+|+|++|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++++..++..+++.+
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 346677899999999999999999999999888888888887766 6677788888999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621 83 MGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 161 (253)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
|++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---------------------------------- 127 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE---------------------------------- 127 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG----------------------------------
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----------------------------------
Confidence 99999999999999999999999985543 4689999999999986
Q ss_pred HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621 162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSG 227 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 227 (253)
..+. +...+...++..++++++++||++|.|++++|++|.+.+.+....
T Consensus 128 ------------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~ 176 (181)
T 2fn4_A 128 ------------SQRQ-----VPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 176 (181)
T ss_dssp ------------GGCC-----SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred ------------cccc-----cCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 2222 445667888888999999999999999999999999999876543
No 18
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2.2e-33 Score=214.37 Aligned_cols=169 Identities=41% Similarity=0.803 Sum_probs=150.9
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
...+..+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 34667899999999999999999999999988888889888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++|+|||++++.++..+..|+..+......++|+++|+||+|+.
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------------------------------------ 133 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE------------------------------------ 133 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG------------------------------------
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc------------------------------------
Confidence 99999999999999999999999988877789999999999986
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..+. +..++.+++++.++++++++||++|.|++++|++|.+.+.+
T Consensus 134 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 134 ----------AQRD-----VTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp ----------GGCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred ----------cccc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 2222 44567788889999999999999999999999999988754
No 19
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-33 Score=218.59 Aligned_cols=172 Identities=48% Similarity=0.876 Sum_probs=154.4
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
..+++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 45677899999999999999999999999988888899998888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++|+|||++++.++..+..|+..+......++|+++|+||+|+.
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------------------------------------ 126 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME------------------------------------ 126 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT------------------------------------
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC------------------------------------
Confidence 99999999999999999999999988766789999999999986
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +..+..+++++.++++++++||++|.|++++|++|.+.+.++..
T Consensus 127 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 174 (203)
T 1zbd_A 127 ----------DERV-----VSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMS 174 (203)
T ss_dssp ----------TSCC-----SCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred ----------cccc-----cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 3222 45567788999999999999999999999999999998877543
No 20
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=3.2e-33 Score=213.96 Aligned_cols=170 Identities=35% Similarity=0.636 Sum_probs=149.9
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
.....+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 45667999999999999999999999999888888898888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+.
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~------------------------------------- 130 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL------------------------------------- 130 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-------------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-------------------------------------
Confidence 9999999999999999999999988876789999999999986
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. +..++.+++++.++++++++||++|.|++++|.+|.+.+....
T Consensus 131 ---------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 131 ---------DARK-----VTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp ---------TTCC-----SCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC---
T ss_pred ---------cccc-----CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 2232 4556778889899999999999999999999999998776543
No 21
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=3.5e-33 Score=211.42 Aligned_cols=167 Identities=57% Similarity=1.018 Sum_probs=143.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
+|||++++.++..+..|+..+......++|+++|+||+|+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--------------------------------------- 121 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--------------------------------------- 121 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT---------------------------------------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC---------------------------------------
Confidence 99999999999999999999988876789999999999984
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
. +. +..+..+++++.++++++++||++|.|++++|..|.+.+.++.
T Consensus 122 -------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 167 (170)
T 1g16_A 122 -------T-RV-----VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167 (170)
T ss_dssp -------T-CC-----SCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred -------c-Cc-----cCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 1 11 3445678888899999999999999999999999999987653
No 22
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=218.91 Aligned_cols=173 Identities=40% Similarity=0.733 Sum_probs=143.1
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
.++..+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 100 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 100 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence 45778999999999999999999999998888888898888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
+|+|||++++.++..+..|+..+......++|+++|+||+|+..
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------------------------------ 144 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP------------------------------------ 144 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG------------------------------------
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc------------------------------------
Confidence 99999999999999999999999887767899999999999862
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR 228 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 228 (253)
.+. +...+..++++..+++++++||++|.|++++|+.|.+.+..+....
T Consensus 145 ----------~~~-----v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~ 193 (200)
T 2o52_A 145 ----------ERE-----VTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSG 193 (200)
T ss_dssp ----------GCC-----SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred ----------ccc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 222 4445678888899999999999999999999999999988765433
No 23
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2.9e-33 Score=216.42 Aligned_cols=174 Identities=41% Similarity=0.767 Sum_probs=151.2
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeE-EEEEeeCCe---------EEEEEEEeCCCccc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFK-IKTVDLKGK---------KIKLQIWDTAGQER 70 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~ 70 (253)
|....++..+||+|+|++|||||||+++|.++.+...+.++.+.++. ...+...+. .+.+.+|||||++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 66667888999999999999999999999998888888899988887 556666655 78999999999999
Q ss_pred ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEE
Q psy9621 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV 149 (253)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (253)
+..++..+++.+|++|+|||++++.++..+..|+..+..+.. .++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~--------------------- 141 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED--------------------- 141 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG---------------------
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc---------------------
Confidence 999999999999999999999999999999999999988764 6899999999999862
Q ss_pred EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.+. +..+..+++++.++++++++||++|.|++++|+.|.+.+.++.
T Consensus 142 -------------------------~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 142 -------------------------QRA-----VKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp -------------------------GCC-----SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred -------------------------ccc-----cCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 222 4456678888899999999999999999999999999887654
No 24
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.8e-34 Score=222.28 Aligned_cols=172 Identities=50% Similarity=0.883 Sum_probs=154.9
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
..++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.+|
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 35678899999999999999999999999888888888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++|+|||++++.+++.+..|+..+......++|+++|+||+|+.
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------------------------------------ 141 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME------------------------------------ 141 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG------------------------------------
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc------------------------------------
Confidence 99999999999999999999999988776789999999999986
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +..++.+.+++.++++++++||++|.|++++|+.|.+.+.++..
T Consensus 142 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 142 ----------EERV-----VPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189 (191)
T ss_dssp ----------GGCC-----SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred ----------cccc-----cCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 2222 55567888999999999999999999999999999999987653
No 25
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=4e-33 Score=211.01 Aligned_cols=165 Identities=38% Similarity=0.660 Sum_probs=148.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 45799999999999999999999999888888899998888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
+|||++++.++..+..|+..+......++|+++|+||+|+..
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-------------------------------------- 125 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-------------------------------------- 125 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG--------------------------------------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc--------------------------------------
Confidence 999999999999999999999887667899999999999862
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.+. +..++..++++..+++++++||++|.|++++|++|.+.+.
T Consensus 126 --------~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 126 --------KRA-----VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp --------GCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred --------ccc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 222 4455677888889999999999999999999999987653
No 26
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-33 Score=210.94 Aligned_cols=167 Identities=34% Similarity=0.647 Sum_probs=148.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
+.+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 36899999999999999999999998888888999988888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
|||++++.++..+..|+..+......++|+++++||+|+.....
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------------------------------------ 125 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGG------------------------------------ 125 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSC------------------------------------
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccc------------------------------------
Confidence 99999999999999999999888767899999999999862210
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.+. +..+..+++++.++++++++||++|.|++++|++|.+.+.
T Consensus 126 -------~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 126 -------ERK-----VAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp -------CCC-----SCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred -------ccC-----CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 022 5556778888999999999999999999999999987654
No 27
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=216.66 Aligned_cols=171 Identities=49% Similarity=0.898 Sum_probs=144.1
Q ss_pred ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCc
Q psy9621 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGA 82 (253)
Q Consensus 3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 82 (253)
..+.+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 35677889999999999999999999999988888889999898888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 83 MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
|++|+|||++++.+++.+..|+..+......++|+++|+||+|+..
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~---------------------------------- 145 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET---------------------------------- 145 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG----------------------------------
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc----------------------------------
Confidence 9999999999999999999999999887767899999999999862
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHHh-CCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
.+. +..++.+++++.+ +++++++||++|.|++++|+.|.+.+.++
T Consensus 146 ------------~~~-----v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 146 ------------DRE-----ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp ------------GCC-----SCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred ------------ccc-----cCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 222 4445677788775 78999999999999999999999988754
No 28
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=7.3e-33 Score=209.68 Aligned_cols=166 Identities=37% Similarity=0.648 Sum_probs=149.5
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
+.+.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+....+.+|||||++.+..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998888889999888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
|+|||++++.++..+..|+..+.......+|+++|+||+|+.
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~-------------------------------------- 124 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT-------------------------------------- 124 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG--------------------------------------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc--------------------------------------
Confidence 999999999999999999999988766889999999999986
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
..+. +..++...+++.++++++++||++|.|++++|+.|.+.+.
T Consensus 125 --------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 125 --------DVRE-----VMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp --------GGCC-----SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred --------cccc-----cCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 2222 4456678888889999999999999999999999988764
No 29
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=6.7e-33 Score=209.48 Aligned_cols=166 Identities=30% Similarity=0.614 Sum_probs=148.6
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
.+..+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++....+.+|||||++.+..++..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35689999999999999999999999988888889999888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
|+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~-------------------------------------- 122 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLL-------------------------------------- 122 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGG--------------------------------------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccC--------------------------------------
Confidence 99999999999999999999988776 789999999999986
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..+. +..++.+++++.++++++++||++|.|++++|+.|.+.+.+
T Consensus 123 --------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 123 --------DDSC-----IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp --------GGCS-----SCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred --------cccc-----cCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 2222 44566788889999999999999999999999999988764
No 30
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=210.87 Aligned_cols=170 Identities=53% Similarity=0.928 Sum_probs=142.5
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
.++..+||+|+|++|||||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4567899999999999999999999988875 466788888888777788888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++|+|||++++.++..+..|+..+......++|+++|+||+|+.
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------------------------------------ 129 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA------------------------------------ 129 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT------------------------------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC------------------------------------
Confidence 99999999999999999999999988776789999999999997
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. +..++.+++++.++++++++||++|.|++++|++|.+.+.++.
T Consensus 130 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 130 ----------HERV-----VKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp ----------SCCC-----SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC--
T ss_pred ----------cccc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 2222 4556678888899999999999999999999999999887654
No 31
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.7e-33 Score=215.58 Aligned_cols=169 Identities=38% Similarity=0.613 Sum_probs=149.5
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
..++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+....+.+|||||++.+..++..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 34577899999999999999999999999888888899999988888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++|+|||++++.++..+..|+..+......++|+++|+||+|+.
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~------------------------------------ 141 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS------------------------------------ 141 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG------------------------------------
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc------------------------------------
Confidence 99999999999999999999999988776789999999999986
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..+. +..++.+++++.++++++++||++|.|++++|+.|.+.+.+
T Consensus 142 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 142 ----------DIRE-----VPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp ----------GGCC-----SCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred ----------cccc-----cCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 2222 44567788888999999999999999999999999887644
No 32
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1e-32 Score=211.32 Aligned_cols=168 Identities=26% Similarity=0.409 Sum_probs=148.7
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
....+||+|+|++|||||||+++|..+.+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 44689999999999999999999998888888889988777 56777888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~------------------------------------- 124 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH------------------------------------- 124 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT-------------------------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch-------------------------------------
Confidence 999999999999999999999877653 589999999999986
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. +..++.+++++.++++++++||++|.|++++|+.|.+.+....
T Consensus 125 ---------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 125 ---------MERV-----ISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp ---------TTCC-----SCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred ---------hcce-----ecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 3333 6667889999999999999999999999999999999988755
No 33
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=5.9e-33 Score=211.94 Aligned_cols=169 Identities=28% Similarity=0.467 Sum_probs=147.0
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCC-eEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKG-KKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
....+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+.+ ..+.+.+|||||++.+..++..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 35679999999999999999999999888877888988888888888876 57899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcc--cccc-eeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHAN--EDVE-KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 161 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
+|+|||++++.+++.+..|+..+..... .+.| +++|+||+|+..
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~--------------------------------- 129 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH--------------------------------- 129 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG---------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc---------------------------------
Confidence 9999999999999999999999877542 2455 899999999862
Q ss_pred HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.+. +..++..++++.++++++++||++|.|++++|++|.+.+....
T Consensus 130 -------------~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 130 -------------MRT-----IKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp -------------GCS-----SCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred -------------ccc-----cCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 222 4456778888999999999999999999999999999887654
No 34
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=6.7e-33 Score=215.37 Aligned_cols=171 Identities=20% Similarity=0.300 Sum_probs=141.4
Q ss_pred ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc-cchhhhcC
Q psy9621 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT-ITTSYYRG 81 (253)
Q Consensus 3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~ 81 (253)
+.+.+..+||+|+|++|||||||+++|.+......+.++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 34567889999999999999999999976544434445556666667778888899999999999988765 77888999
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 82 AMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
+|++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+.
T Consensus 97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~--------------------------------- 143 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA--------------------------------- 143 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT---------------------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc---------------------------------
Confidence 9999999999999999999999999887653 589999999999996
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
..+. +..++++++++.++++++++||++|.|++++|+.|++.+...
T Consensus 144 -------------~~~~-----v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 144 -------------RSRE-----VSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp -------------TTCC-----SCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred -------------ccCC-----cCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 3232 455677889999999999999999999999999999988653
No 35
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.7e-33 Score=217.34 Aligned_cols=175 Identities=40% Similarity=0.671 Sum_probs=138.4
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
...+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 35567899999999999999999999999888888889888888888888988899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++|+|||++++.++..+..|+..+......++|+++|+||+|+......
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~------------------------------- 151 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAAT------------------------------- 151 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHH-------------------------------
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccc-------------------------------
Confidence 9999999999999999999999998876678999999999998621100
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
...+. +..++.+++++.++++++++||++|.|++++|.+|.+.+.+
T Consensus 152 ---------~~~~~-----v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 152 ---------EGQKC-----VPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp ---------TTCCC-----CCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred ---------ccccc-----cCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 01122 55667788999999999999999999999999999998864
No 36
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-33 Score=216.65 Aligned_cols=167 Identities=28% Similarity=0.466 Sum_probs=143.2
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 456799999999999999999999998888777888875554 4456777888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~------------------------------------ 127 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET------------------------------------ 127 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS------------------------------------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC------------------------------------
Confidence 999999999999999988888776543 479999999999986
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
. +. +...+...+++.++++++++||++|.|++++|++|.+.+..+.
T Consensus 128 ----------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 128 ----------Q-RE-----VDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp ----------S-CS-----SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred ----------c-cc-----cCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhhh
Confidence 2 11 4445677888889999999999999999999999998876544
No 37
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=212.43 Aligned_cols=165 Identities=23% Similarity=0.388 Sum_probs=140.9
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+|||+|++.+..+ ..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 456799999999999999999999999988888899887663 55677888899999999999988875 6799999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcc---cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHAN---EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~----------------------------------- 140 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA----------------------------------- 140 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG-----------------------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh-----------------------------------
Confidence 999999999999999999999987743 589999999999986
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeec-cCCCCHHHHHHHHHHHHHh
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSA-KANINIEKAFIELATAIYD 223 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi~~l~~~l~~~~~~ 223 (253)
..+. +..+++.++++.++++++++|| ++|.|++++|+.|.+.+.+
T Consensus 141 -----------~~~~-----v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 141 -----------QYRQ-----VTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp -----------GGCS-----SCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred -----------hcCc-----cCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 2222 5566788999999999999999 8999999999999988754
No 38
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.5e-32 Score=209.54 Aligned_cols=167 Identities=28% Similarity=0.517 Sum_probs=149.1
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
+..+.+||+|+|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 355689999999999999999999999988888888888777 5667788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~------------------------------------ 136 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM------------------------------------ 136 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS------------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch------------------------------------
Confidence 999999999999999999999987753 4689999999999986
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeecc-CCCCHHHHHHHHHHHHHh
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAK-ANINIEKAFIELATAIYD 223 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~l~~~l~~~~~~ 223 (253)
..+. +..++.+++++.++++++++||+ +|.|++++|+.|.+.+.+
T Consensus 137 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 137 ----------HLRK-----VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp ----------TTCC-----SCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred ----------hccC-----cCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 3333 66677899999999999999999 999999999999998765
No 39
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=8.2e-33 Score=217.93 Aligned_cols=182 Identities=21% Similarity=0.445 Sum_probs=146.4
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
.+....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+|||+|++.|..++..+++++|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 34566899999999999999999999999999888999987764 56677788899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHH-HHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 84 GIMLVYDITNEKSFDN-ILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
++|+|||++++.++.. +..|+..+.... .++|+++|+||+|+..... ...
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~----------------------------~~~ 151 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLS----------------------------TLM 151 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHH----------------------------HHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchh----------------------------hhh
Confidence 9999999999999999 689999998876 6899999999999972110 000
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCC-HHHHHHHHHHHHHhccC
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANIN-IEKAFIELATAIYDKTS 226 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g-i~~l~~~l~~~~~~~~~ 226 (253)
.+... ..+. +..+++.++++.+++ ++++|||++|.| |+++|+.|.+.+..+..
T Consensus 152 ----~~~~~--~~~~-----v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 152 ----ELSHQ--KQAP-----ISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp ----HHHHT--TCCC-----CCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred ----hhccc--ccCc-----cCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 00000 1122 667788999999998 999999999998 99999999999887654
No 40
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=1.5e-32 Score=209.61 Aligned_cols=165 Identities=42% Similarity=0.708 Sum_probs=147.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999988888888999988888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
|||++++.++..+..|+..+......++|+++|+||+|+.
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~---------------------------------------- 132 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS---------------------------------------- 132 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG----------------------------------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc----------------------------------------
Confidence 9999999999999999999988776789999999999986
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..+. +...+.+.+++.++++++++||++|.|++++|+.|.+.+..
T Consensus 133 ------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 133 ------DKRQ-----VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp ------GGCC-----SCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred ------ccCc-----CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 2222 44566778888899999999999999999999999886644
No 41
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=2.5e-32 Score=210.37 Aligned_cols=165 Identities=32% Similarity=0.545 Sum_probs=142.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
..+||+|+|++|||||||+++|.++.+...+.++.+ +.....+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 578999999999999999999999888888777775 4444666778888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|||++++.++..+..|+..+.... ..++|+++|+||+|+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--------------------------------------- 122 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP--------------------------------------- 122 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS---------------------------------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc---------------------------------------
Confidence 999999999999999999988764 3689999999999985
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
. .. ...+....+++.++++++++||++|.|++++|++|.+.+....
T Consensus 123 -------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 123 -------S-RT-----VDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp -------S-CS-----SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred -------c-cc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 1 11 4556778899999999999999999999999999999998765
No 42
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.2e-32 Score=211.01 Aligned_cols=182 Identities=27% Similarity=0.543 Sum_probs=149.8
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR 80 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (253)
|+..+....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++
T Consensus 10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 88 (194)
T 2atx_A 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP 88 (194)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence 5556667889999999999999999999999988888888887665 355677778899999999999999999999999
Q ss_pred CccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621 81 GAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (253)
.+|++|+|||++++.++..+. .|+..+.... .++|+++|+||+|+.....
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~---------------------------- 139 (194)
T 2atx_A 89 MTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPK---------------------------- 139 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHH----------------------------
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccccc----------------------------
Confidence 999999999999999999997 7999988765 5899999999999962210
Q ss_pred hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
. .+.+... ..+. +..++..++++.+++ +++++||++|.|++++|++|.+.+..
T Consensus 140 -~---~~~~~~~--~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 140 -T---LARLNDM--KEKP-----ICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp -H---HHHHTTT--TCCC-----CCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred -c---hhhcccc--cCcc-----cCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 0 0000000 1112 556778899999997 99999999999999999999988763
No 43
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=208.07 Aligned_cols=168 Identities=24% Similarity=0.362 Sum_probs=134.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc--ccccchhhhcCccE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER--FHTITTSYYRGAMG 84 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~ 84 (253)
++.+||+|+|++|||||||+++|.+..+... .++.+.++....+.+++..+.+.+|||||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 4679999999999999999999998877655 34567777777788888889999999999987 56667788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~------------------------------------ 124 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA------------------------------------ 124 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT------------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc------------------------------------
Confidence 999999999999999999999887753 3579999999999996
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +..++.+.++..++++++++||++|.|++++|++|.+.+..+..
T Consensus 125 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 125 ----------RCRE-----VSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp ----------TTCC-----SCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred ----------cccc-----cCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 3232 44556778888899999999999999999999999999876554
No 44
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.3e-32 Score=210.48 Aligned_cols=174 Identities=37% Similarity=0.648 Sum_probs=134.2
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhh
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYY 79 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~ 79 (253)
|+. .....+||+|+|++|||||||+++|.+..+...+.++.+.++....+.++ +....+.+|||||++.+..++..++
T Consensus 1 Ms~-~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 79 (182)
T 1ky3_A 1 MSS-RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFY 79 (182)
T ss_dssp -------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCS
T ss_pred CCc-ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHh
Confidence 544 45678999999999999999999999998888888898888888888777 5668899999999999999999999
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621 80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE 155 (253)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (253)
+.+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+...
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------------------- 133 (182)
T 1ky3_A 80 RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES-------------------------- 133 (182)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG--------------------------
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc--------------------------
Confidence 999999999999999999999999999887754 68999999999998521
Q ss_pred cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH-HhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-EYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.+. +..++..++++ ..+++++++||++|.|++++|++|.+.+.+++
T Consensus 134 -------------------~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 134 -------------------KKI-----VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp -------------------GCC-----SCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred -------------------ccc-----CCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 111 34456677777 45689999999999999999999999887654
No 45
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=3.8e-32 Score=207.28 Aligned_cols=168 Identities=35% Similarity=0.636 Sum_probs=145.1
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
+.+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 35668999999999999999999999998888888999988888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcc----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
+|+|||++++.++..+..|+..+..... .++|+++|+||+|+.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--------------------------------- 129 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--------------------------------- 129 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS---------------------------------
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc---------------------------------
Confidence 9999999999999999999999887754 679999999999985
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHH-HhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-EYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
. +. +..++..++++ ..+++++++||++|.|++++|+.|.+.+.++
T Consensus 130 -------------~-~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 130 -------------E-RQ-----VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp -------------S-CS-----SCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred -------------c-cc-----cCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 1 11 44456677777 4568999999999999999999999998764
No 46
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=5.1e-32 Score=209.98 Aligned_cols=171 Identities=27% Similarity=0.555 Sum_probs=148.1
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
.....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+|||||++.+..++..+++++|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3456799999999999999999999999998888899887765 456678888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+...
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~---------------------------------- 142 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKD---------------------------------- 142 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCT----------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccC----------------------------------
Confidence 9999999999999997 67888887665 67999999999998621
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCc-eEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVR-FMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +..++..++++.++++ ++++||++|.|++++|+.|.+.+..+..
T Consensus 143 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 143 ----------GSDD-----VTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp ----------TTTC-----CCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred ----------CCCc-----ccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcCC
Confidence 1122 5667788999999987 9999999999999999999999987653
No 47
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=2.4e-32 Score=210.99 Aligned_cols=168 Identities=36% Similarity=0.693 Sum_probs=144.8
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc-ccchhhhcCcc
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH-TITTSYYRGAM 83 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d 83 (253)
+....+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+. .++..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 44567999999999999999999999999988888999988888888888888999999999999988 88899999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----------------------------------- 140 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR----------------------------------- 140 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG-----------------------------------
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----------------------------------
Confidence 9999999999999999999999998875 4789999999999986
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCC---CCHHHHHHHHHHHHHh
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKAN---INIEKAFIELATAIYD 223 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~gi~~l~~~l~~~~~~ 223 (253)
..+. +..++.+++++.++++++++||++| .|++++|..|.+.+.+
T Consensus 141 -----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 141 -----------SAIQ-----VPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp -----------GGCC-----SCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred -----------ccce-----eCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 2222 4556678889999999999999999 9999999999887643
No 48
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=6.4e-32 Score=207.92 Aligned_cols=165 Identities=16% Similarity=0.317 Sum_probs=142.5
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
+....+||+|+|++|||||||+++|..+.+...+.++. .++ ...+.+++..+.+.+|||+|++.+. +++.+|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 45678999999999999999999999999888877774 344 3778888889999999999998776 7889999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||++++.+|+.+..|+..+..... .++|+++++||+|+...
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~---------------------------------- 134 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAA---------------------------------- 134 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTT----------------------------------
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc----------------------------------
Confidence 9999999999999999999999988753 68999999999998511
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. +..++++++++.++ ++++++||++|.|++++|++|.+.+.+++
T Consensus 135 ----------~~~~-----v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 135 ----------NPRV-----IDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp ----------BCCC-----SCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred ----------cccc-----cCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 1222 56677889999997 89999999999999999999999987764
No 49
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=213.56 Aligned_cols=170 Identities=26% Similarity=0.427 Sum_probs=142.8
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
+....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+.+..+.+.+|||||++.+..++..+++.+|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 445789999999999999999999999999888888888776 5666677778899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||++++.++..+..|+..+..... .++|+++|+||+|+.
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~------------------------------------ 142 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS------------------------------------ 142 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG------------------------------------
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc------------------------------------
Confidence 9999999999999999999999877642 579999999999986
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. +...+.+++++.++++++++||++|.|++++|+.|.+.+.+...
T Consensus 143 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 143 ----------PERE-----VQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp ----------GGCC-----SCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred ----------cccc-----cCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 2222 55667889999999999999999999999999999999987653
No 50
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=3.7e-32 Score=205.83 Aligned_cols=165 Identities=20% Similarity=0.310 Sum_probs=131.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc-cchhhhcCccEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT-ITTSYYRGAMGIML 87 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~il 87 (253)
.+||+|+|++|||||||+++|.+..+.....++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999997777666566666677777888888899999999999998876 77778999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|||++++.++..+..|+..+..... .++|+++|+||+|+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~--------------------------------------- 122 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA--------------------------------------- 122 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG---------------------------------------
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh---------------------------------------
Confidence 9999999999999999999988764 489999999999986
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
..+. +..++.+++++.++++++++||++|.|++++|+.|.+.+..+
T Consensus 123 -------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 123 -------RSRE-----VSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp -------GGCC-----SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred -------hccc-----CCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 2232 566778899999999999999999999999999999988764
No 51
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=7e-32 Score=211.98 Aligned_cols=172 Identities=55% Similarity=1.005 Sum_probs=150.4
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
+.+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 45678999999999999999999999998888888999988888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
+|+|||++++.++..+..|+..+......++|+++|+||+|+.
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------------------------------------- 138 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME------------------------------------- 138 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-------------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-------------------------------------
Confidence 9999999999999999999999988776789999999999984
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR 228 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 228 (253)
. +. +..+...++++.++++++++||++|.|++++|.+|.+.+.++....
T Consensus 139 ---------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 187 (213)
T 3cph_A 139 ---------T-RV-----VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 187 (213)
T ss_dssp ---------S-CC-----SCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTT
T ss_pred ---------c-cc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 1 11 3445677888889999999999999999999999999887765433
No 52
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=6.7e-32 Score=207.64 Aligned_cols=178 Identities=22% Similarity=0.502 Sum_probs=145.1
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+|||||++.|..++..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 467899999999999999999999999888888888876664 4567778889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 86 MLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
|+|||++++.+++.+ ..|+..+.... .++|+++|+||+|+..... ..
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~----------------------------~~--- 130 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVS----------------------------TL--- 130 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHH----------------------------HH---
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchh----------------------------hH---
Confidence 999999999999998 68988887765 6899999999999862100 00
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeecc-CCCCHHHHHHHHHHHHHhc
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAK-ANINIEKAFIELATAIYDK 224 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~gi~~l~~~l~~~~~~~ 224 (253)
.++... ..+. +..++++++++.++ ++++++||+ ++.|++++|+.|.+.+.++
T Consensus 131 -~~~~~~--~~~~-----v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 131 -VELSNH--RQTP-----VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp -HHHHTT--TCCC-----CCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred -hhhhhc--ccCC-----CCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhcC
Confidence 000000 1122 55667889999988 799999999 6899999999999988753
No 53
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=7.6e-32 Score=203.48 Aligned_cols=164 Identities=21% Similarity=0.353 Sum_probs=120.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
+.+||+|+|++|||||||+++|.+...... .++.+.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 368999999999999999999987655433 45556555 3566788889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|||++++.+++.+..|+..+.... ..++|+++|+||+|+.
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~--------------------------------------- 119 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV--------------------------------------- 119 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC---------------------------------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc---------------------------------------
Confidence 999999999999999999987753 3689999999999997
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
..+. +..++.+.+++.++++++++||++|.|++++|+.|.+.+..+
T Consensus 120 -------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 120 -------RSRE-----VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp -------SSCC-----SCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred -------cccc-----cCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 3333 566677889999999999999999999999999999988764
No 54
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.7e-32 Score=208.76 Aligned_cols=168 Identities=29% Similarity=0.454 Sum_probs=144.7
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
.....+||+|+|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+|||||++. ..++..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 345689999999999999999999999998888888887665 35566788889999999999988 7778889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~------------------------------------ 145 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD------------------------------------ 145 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG------------------------------------
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc------------------------------------
Confidence 9999999999999999999999887643 689999999999986
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCC-CHHHHHHHHHHHHHhcc
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANI-NIEKAFIELATAIYDKT 225 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~~~ 225 (253)
..+. +...+..++++.++++++++||++|. |++++|++|.+.+.++.
T Consensus 146 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 146 ----------HSRQ-----VSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp ----------GGCC-----SCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred ----------cccc-----cCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 2222 45567788898999999999999999 99999999999988765
No 55
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=8.7e-32 Score=203.14 Aligned_cols=163 Identities=31% Similarity=0.562 Sum_probs=142.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
..+||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3689999999999999999999999888888888876654 556677888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|||++++.++..+..|+..+.... ..++|+++|+||+|+..
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-------------------------------------- 122 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-------------------------------------- 122 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG--------------------------------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc--------------------------------------
Confidence 999999999999999999987764 35899999999999862
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHh-CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.+. +..++..++++.+ +++++++||++|.|++++|++|.+.+.
T Consensus 123 --------~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 123 --------ERV-----VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp --------GCC-----SCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred --------ccc-----CCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 222 4456677888887 699999999999999999999998764
No 56
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.5e-31 Score=201.76 Aligned_cols=164 Identities=30% Similarity=0.552 Sum_probs=141.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
..+||+|+|++|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+|||||++++..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4689999999999999999999998888887888776554 456678888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|||++++.++..+..|+..+..... .++|+++++||+|+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~--------------------------------------- 122 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE--------------------------------------- 122 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG---------------------------------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc---------------------------------------
Confidence 9999999999999999999988764 489999999999986
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..+. +..++..++++.++++++++||++|.|++++|++|.+.+.+
T Consensus 123 -------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 123 -------DKRQ-----VSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp -------GGCC-----SCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred -------ccCc-----cCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 2222 45567788888999999999999999999999999998764
No 57
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-31 Score=207.15 Aligned_cols=167 Identities=43% Similarity=0.778 Sum_probs=149.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45799999999999999999999999988888899998988888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.++..+..|+..+..... .++|+++|+||+|+.
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-------------------------------------- 134 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-------------------------------------- 134 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--------------------------------------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--------------------------------------
Confidence 99999999999999999999877653 579999999999984
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
. +. +...+..++++.++++++++||++|.|++++|++|.+.+.+..
T Consensus 135 --------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 135 --------N-RE-----VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp --------S-CC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred --------c-cc-----cCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 1 11 4455678888899999999999999999999999999998654
No 58
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.8e-31 Score=207.92 Aligned_cols=181 Identities=24% Similarity=0.432 Sum_probs=139.5
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
.....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.|..++..+++++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 456789999999999999999999999888888888887555 4566778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||++++.++..+. .|+..+..+. .++|+++|+||+|+..+...
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~------------------------------- 142 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKV------------------------------- 142 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHH-------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhh-------------------------------
Confidence 99999999999999997 7999988775 58999999999999622100
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..++... ..+. +..++...+++.++. +++++||++|.|++++|+.|.+.+.....
T Consensus 143 -~~~~~~~--~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 143 -LIELDKC--KEKP-----VPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp -HHHHHTT--TCCC-----CCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred -hhhhccc--cccc-----CCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 0000000 0111 556678889999996 99999999999999999999999877653
No 59
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=8.1e-32 Score=210.84 Aligned_cols=179 Identities=22% Similarity=0.508 Sum_probs=145.3
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
..+..+||+|+|++|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.|..++..+++.+|+
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 3467899999999999999999999999998888888876663 556777788999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+.... ....
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~----------------------------~~~~- 152 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDV----------------------------STLV- 152 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCH----------------------------HHHH-
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccch----------------------------hhhh-
Confidence 9999999999999998 68999887765 689999999999986210 0000
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeecc-CCCCHHHHHHHHHHHHHhc
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAK-ANINIEKAFIELATAIYDK 224 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~gi~~l~~~l~~~~~~~ 224 (253)
++... ..+. +..++++++++.++ ++++++||+ ++.|++++|+.|.+.++.+
T Consensus 153 ---~~~~~--~~~~-----v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 153 ---ELSNH--RQTP-----VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp ---HHHTT--TCCC-----CCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred ---hhccc--ccCC-----CCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhhC
Confidence 00000 1122 55667889999988 799999999 6899999999999988753
No 60
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.9e-32 Score=216.10 Aligned_cols=171 Identities=42% Similarity=0.807 Sum_probs=148.8
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCe----------EEEEEEEeCCCcccccc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK----------KIKLQIWDTAGQERFHT 73 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~~~~ 73 (253)
..++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++. .+.+.+|||||++.+..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 35678899999999999999999999998888888888888887777777665 78899999999999999
Q ss_pred cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621 74 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI 152 (253)
Q Consensus 74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (253)
++..+++.+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~------------------------- 154 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP------------------------- 154 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG-------------------------
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc-------------------------
Confidence 999999999999999999999999999999988866543 679999999999986
Q ss_pred cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. +...+.+++++.++++++++||++|.|++++|++|.+.+.++.
T Consensus 155 ---------------------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 155 ---------------------DQRE-----VNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp ---------------------GGCC-----SCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred ---------------------cccc-----cCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 2222 4456778889999999999999999999999999999887754
No 61
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2.6e-31 Score=207.00 Aligned_cols=165 Identities=33% Similarity=0.580 Sum_probs=145.2
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeE----------------------------
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKK---------------------------- 57 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 57 (253)
+++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 4568999999999999999999999999888888999888887777777654
Q ss_pred ---------EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccc
Q psy9621 58 ---------IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128 (253)
Q Consensus 58 ---------~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 128 (253)
..+.+|||||++.+..++..+++.+|++|+|||++++.++..+..|+..+.... +.|+++|+||+|..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D~~- 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKIDKN- 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTTCC-
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCCcc-
Confidence 889999999999999999999999999999999999999999999999998775 49999999999932
Q ss_pred ccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCC
Q psy9621 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANI 208 (253)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 208 (253)
.+. +..++.+++++.++++++++||++|.
T Consensus 161 ----------------------------------------------~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~ 189 (208)
T 3clv_A 161 ----------------------------------------------KFQ-----VDILEVQKYAQDNNLLFIQTSAKTGT 189 (208)
T ss_dssp -----------------------------------------------CC-----SCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred ----------------------------------------------ccc-----CCHHHHHHHHHHcCCcEEEEecCCCC
Confidence 222 45567788889999999999999999
Q ss_pred CHHHHHHHHHHHHHhc
Q psy9621 209 NIEKAFIELATAIYDK 224 (253)
Q Consensus 209 gi~~l~~~l~~~~~~~ 224 (253)
|++++|++|.+.+.++
T Consensus 190 ~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 190 NIKNIFYMLAEEIYKN 205 (208)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988764
No 62
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.4e-31 Score=201.72 Aligned_cols=163 Identities=29% Similarity=0.525 Sum_probs=142.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++....+.+|||||++.+..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999888888788876444 56677888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~---------------------------------------- 121 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE---------------------------------------- 121 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG----------------------------------------
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc----------------------------------------
Confidence 999999999999999999877653 589999999999986
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..+. +...+.+++++.++++++++||++|.|++++|+.|.+.+.+
T Consensus 122 ------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 122 ------SERE-----VSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp ------GGCC-----SCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ------cccc-----CCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 2222 44566788888999999999999999999999999988754
No 63
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.3e-31 Score=204.49 Aligned_cols=169 Identities=30% Similarity=0.532 Sum_probs=145.7
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
.....+||+|+|++|||||||+++|.+..+...+.++.+..+. ..+.+.+..+.+.+|||||++.+..++..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 4456799999999999999999999998888888888776553 456677888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||++++.++..+..|+..+..... .++|+++|+||+|+.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~------------------------------------ 136 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE------------------------------------ 136 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG------------------------------------
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc------------------------------------
Confidence 9999999999999999999999988764 489999999999986
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. +...+.+++++.++++++++||+++.|++++|++|.+.+..+.
T Consensus 137 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 137 ----------DKRQ-----VSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp ----------GGCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ----------ccCc-----cCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 2222 4456778888899999999999999999999999999987654
No 64
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-31 Score=209.81 Aligned_cols=169 Identities=20% Similarity=0.341 Sum_probs=137.4
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCC--CCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc-ccccchhhhcC
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDA--FNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER-FHTITTSYYRG 81 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 81 (253)
..+..+||+|+|++|||||||+++|.+.. +... .++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 34567999999999999999999998643 3333 34466677777788888889999999999876 45566778899
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 82 AMGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
++++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~--------------------------------- 158 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV--------------------------------- 158 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG---------------------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh---------------------------------
Confidence 999999999999999999999998887643 3579999999999996
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. +..++.+.++..+++++++|||++|.||+++|+.|.+.+..+.
T Consensus 159 -------------~~r~-----v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 159 -------------RCRE-----VSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp -------------GGCC-----SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred -------------cCce-----EeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 2222 4455677888889999999999999999999999999886544
No 65
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.2e-31 Score=203.38 Aligned_cols=163 Identities=18% Similarity=0.326 Sum_probs=136.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+|+|++|||||||+++|.++.+.. +.++.+..+ ...+.+++..+.+.+|||+|++. ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 457999999999999999999999988876 678887554 56677888889999999999876 45789999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc---ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHA---NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+...
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~---------------------------------- 123 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS---------------------------------- 123 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTT----------------------------------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc----------------------------------
Confidence 9999999999999999877665553 258999999999998411
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHh-CCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. +..++++++++.+ +++++++||++|.|++++|+.|.+.+....
T Consensus 124 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 124 ----------SPRV-----VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp ----------BCCC-----SCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred ----------ccCc-----CCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 1122 5556778888877 589999999999999999999999887654
No 66
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=6.5e-32 Score=213.67 Aligned_cols=172 Identities=28% Similarity=0.541 Sum_probs=152.2
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR 80 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (253)
|........+||+|+|++|||||||+++|+.+.+...+.++.+.++......+++..+.+.+|||||++.+..++..+++
T Consensus 7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 86 (221)
T 3gj0_A 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 86 (221)
T ss_dssp CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred ccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh
Confidence 34556778899999999999999999998888888888899999998888888999999999999999999999999999
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
++|++|+|||++++.++..+..|+..+.... .++|+++|+||+|+..
T Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~-------------------------------- 133 (221)
T 3gj0_A 87 QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD-------------------------------- 133 (221)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSS--------------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccc--------------------------------
Confidence 9999999999999999999999999998876 6899999999999862
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
.. .......+++.++++++++||++|.|++++|.+|.+.+.....
T Consensus 134 --------------~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 134 --------------RK-------VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp --------------CS-------SCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred --------------cc-------ccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 11 1224566788889999999999999999999999999987654
No 67
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=1.5e-31 Score=211.04 Aligned_cols=173 Identities=27% Similarity=0.462 Sum_probs=147.8
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
..+..+||+|+|++|||||||+++|.++.+...+.++.+.+......... +..+.+.+|||||++.+..++..+++.+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 45678999999999999999999999988888888888877776665544 34488999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
++|+|||++++.++..+..|+..+......++|+++|+||+|+.
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------------------------------------ 130 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK------------------------------------ 130 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC------------------------------------
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc------------------------------------
Confidence 99999999999999999999999988877789999999999986
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR 228 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 228 (253)
..+. +.......+++..+++++++||++|.|++++|+.|.+.+.......
T Consensus 131 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 131 ----------NRQK-----ISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLI 180 (218)
T ss_dssp -------------------CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCC
T ss_pred ----------cccc-----cCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcccccc
Confidence 2222 5556677888888999999999999999999999999998766544
No 68
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.98 E-value=4.9e-31 Score=202.55 Aligned_cols=177 Identities=25% Similarity=0.502 Sum_probs=145.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
..+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 478999999999999999999999888888888887554 4556778888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621 88 VYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166 (253)
Q Consensus 88 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (253)
|||++++.++..+. .|+..+.... .++|+++|+||+|+..... ......
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~-----------------------------~~~~~~ 132 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKD-----------------------------TIEKLK 132 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHH-----------------------------HHHHHH
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccch-----------------------------hhhhhc
Confidence 99999999999997 7988888765 4899999999999862210 001111
Q ss_pred hhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
+. ..+. +..++..++++.++. +++++||++|.|++++|+.|.+.+....
T Consensus 133 ~~-----~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 133 EK-----KLTP-----ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HT-----TCCC-----CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred cc-----cccc-----CCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 00 0111 556678889999996 9999999999999999999999887543
No 69
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.98 E-value=2.5e-33 Score=218.34 Aligned_cols=169 Identities=54% Similarity=0.977 Sum_probs=142.3
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
..+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 34678999999999999999999999998888888888888888888889888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+.
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~------------------------------------- 151 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT------------------------------------- 151 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-------------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC-------------------------------------
Confidence 9999999999999999999999988776789999999999986
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
..+. +...+.+++++.++++++++||++|.|++++|++|.+.+.++
T Consensus 152 ---------~~~~-----v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 152 ---------TKKV-----VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp -----------CC-----CCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred ---------cccc-----CCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 2222 445567888999999999999999999999999998876543
No 70
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.98 E-value=3.4e-32 Score=212.81 Aligned_cols=168 Identities=20% Similarity=0.434 Sum_probs=111.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcC--CCCCcccCccceeeEEEEEeeCCe--EEEEEEEeCCCcccccccchhhhcCc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDD--AFNTTFISTIGIDFKIKTVDLKGK--KIKLQIWDTAGQERFHTITTSYYRGA 82 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 82 (253)
...+||+|+|++|||||||+++|.+. .+...+.++.+.++....+.+.+. .+.+.+|||||++.+..++..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999988 777788888887887778888876 88999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcc---cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621 83 MGIMLVYDITNEKSFDNILKWLRNIDEHAN---EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159 (253)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (253)
|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-------------------------------- 145 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP-------------------------------- 145 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-----------------------------------
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc--------------------------------
Confidence 999999999999999999999999988875 689999999999986
Q ss_pred hHHHHHHhhhhhcCC-CchhhhhhccchhHHHHHHHhCCceEEeeccC-CCCHHHHHHHHHHHHHhcc
Q psy9621 160 NILKWLRNIDEHANE-DPQVVNSWVCKHRGEAIAREYGVRFMETSAKA-NINIEKAFIELATAIYDKT 225 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~gi~~l~~~l~~~~~~~~ 225 (253)
. .+. +..++..++++.++++++++||++ |.|++++|++|.+.+.+..
T Consensus 146 --------------~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 146 --------------PQRHQ-----VRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp ------------------C-----CCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred --------------hhhcc-----CCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 2 222 555678889999999999999999 9999999999999887643
No 71
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-30 Score=204.18 Aligned_cols=179 Identities=26% Similarity=0.512 Sum_probs=140.8
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 356789999999999999999999999888888888876665 3467788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 86 MLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... ..++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~-----------------------------~~~~ 150 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEH-----------------------------VRTE 150 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHH-----------------------------HHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhcccc-----------------------------chhh
Confidence 999999999999998 67888887754 6899999999999963211 1111
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
+.++ ..+. +..++..++++.++. +++++||++|.|++++|+.|.+.+....
T Consensus 151 ~~~~-----~~~~-----v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 151 LARM-----KQEP-----VRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp HHHT-----TCCC-----CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred hhhc-----ccCC-----CCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 1111 1111 555677889999887 9999999999999999999999987654
No 72
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=1.2e-30 Score=203.43 Aligned_cols=177 Identities=27% Similarity=0.506 Sum_probs=145.5
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 456899999999999999999999999988888888887765 3467788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 86 MLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+..... ....
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~-----------------------------~~~~ 150 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEH-----------------------------TRRE 150 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHH-----------------------------HHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCcc-----------------------------chhh
Confidence 999999999999999 57888887765 5899999999999973211 0001
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.. +. ..+. +..++..++++.++. +++++||++|.|++++|+.|.+.+.+
T Consensus 151 ~~---~~--~~~~-----v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 151 LA---KM--KQEP-----VRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp HH---TT--TCCC-----CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred hc---cc--ccCc-----CCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 11 10 0111 556678889999997 99999999999999999999988753
No 73
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=7.3e-31 Score=206.72 Aligned_cols=178 Identities=31% Similarity=0.585 Sum_probs=125.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3579999999999999999999999888888788876554 455677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.. ....
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~-----------------------------~~~~ 160 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSL-----------------------------VNKL 160 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHH-----------------------------HHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchh-----------------------------hhhh
Confidence 999999999999997 7998887765 67999999999999732110 0000
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
... ..+. +..+++.++++.+++ +++++||++|.|++++|+.|.+.+.+..
T Consensus 161 ~~~-----~~~~-----v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 161 RRN-----GLEP-----VTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp HHT-----TCCC-----CCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred ccc-----ccCc-----ccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 000 0111 556678899999997 9999999999999999999999987654
No 74
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=4.7e-32 Score=210.21 Aligned_cols=167 Identities=20% Similarity=0.256 Sum_probs=137.4
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcc-----------cCccceeeEEEEE-eeCCeEEEEEEEeCCCccccc
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTF-----------ISTIGIDFKIKTV-DLKGKKIKLQIWDTAGQERFH 72 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~ 72 (253)
..+..+||+|+|++|||||||++.+.+ .+...+ .++++.++....+ .+++..+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 456789999999999999999965554 454443 3466666655444 566778899999999999999
Q ss_pred ccchhhhcCccEEEEEEeCC------ChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceee
Q psy9621 73 TITTSYYRGAMGIMLVYDIT------NEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGI 146 (253)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (253)
.++..+++++|++|+|||++ +..++..+..|+..+.. ...++|+++|+||+|+..+
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~----------------- 150 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA----------------- 150 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC-----------------
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc-----------------
Confidence 99999999999999999999 56778888888888733 3378999999999998621
Q ss_pred EEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 147 MLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
+..++.+++++.+++ +++++||++|.|++++|++|.+.+.++.
T Consensus 151 ------------------------------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 151 ------------------------------------LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp ------------------------------------CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------cCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 455677888888998 9999999999999999999999998765
Q ss_pred C
Q psy9621 226 S 226 (253)
Q Consensus 226 ~ 226 (253)
.
T Consensus 195 ~ 195 (198)
T 3t1o_A 195 A 195 (198)
T ss_dssp C
T ss_pred h
Confidence 4
No 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6.4e-31 Score=199.20 Aligned_cols=164 Identities=28% Similarity=0.456 Sum_probs=139.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
..+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+..++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4689999999999999999999998888777888775554 445667778899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
|||++++.+++.+..|+..+..... .++|+++|+||+|+..
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~------------------------------------- 123 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP------------------------------------- 123 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-------------------------------------
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc-------------------------------------
Confidence 9999999999999999888877642 4799999999999862
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.+. +...+.+.+++.++++++++||++|.|++++|++|.+.+..
T Consensus 124 ---------~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 124 ---------SRE-----VQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp ---------GCC-----SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred ---------ccc-----cCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 222 44456678888899999999999999999999999886543
No 76
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=1.7e-31 Score=204.55 Aligned_cols=174 Identities=26% Similarity=0.550 Sum_probs=127.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+|+|++|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45789999999999999999999998888777888765443 23445566778899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.. .
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~--------------------------------~ 131 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQF--------------------------------F 131 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHH--------------------------------H
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCccc--------------------------------c
Confidence 999999999999997 7999888775 58999999999998622110 0
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.. ...... +...+..++++.++. +++++||++|.|++++|+.|.+.+..
T Consensus 132 ~~----~~~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 132 ID----HPGAVP-----ITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp HH----C--CCC-----CCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred cc----cccCCC-----CCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 00 000111 455677889999996 99999999999999999999988753
No 77
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=4.1e-30 Score=198.43 Aligned_cols=166 Identities=31% Similarity=0.517 Sum_probs=134.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
-..+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 3568999999999999999999999888877777776554 355667788889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.++..+..|+..+..... .++|+++|+||+|+.
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-------------------------------------- 139 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-------------------------------------- 139 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS--------------------------------------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC--------------------------------------
Confidence 99999999999999999999877653 579999999999986
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
. +. ...++.+++++.++++++++||++|.|++++|++|.+.+.+.+
T Consensus 140 --------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 140 --------T-RT-----VDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp --------C-CC-----SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred --------c-cc-----CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 2 11 4456778889999999999999999999999999999887654
No 78
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=5.2e-30 Score=192.82 Aligned_cols=162 Identities=32% Similarity=0.562 Sum_probs=141.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV 88 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv 88 (253)
.+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 57999999999999999999999888877777776444 45566778888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 89 YDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
||++++.++..+..|+..+..... .++|+++++||+|+.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~---------------------------------------- 121 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA---------------------------------------- 121 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS----------------------------------------
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh----------------------------------------
Confidence 999999999999999999887753 479999999999986
Q ss_pred hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
. +. ......+++++.++++++++||++|.|++++|++|.+.+.+
T Consensus 122 ------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 122 ------A-RT-----VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp ------C-CC-----SCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred ------h-cc-----cCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 2 11 44566788888999999999999999999999999998754
No 79
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=3.8e-30 Score=199.32 Aligned_cols=167 Identities=20% Similarity=0.353 Sum_probs=134.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcC--CCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc-ccccchhhhcCcc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDD--AFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER-FHTITTSYYRGAM 83 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d 83 (253)
...+||+|+|++|||||||+++|.+. .+...+ ++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 45799999999999999999999853 333333 3456677777788888889999999999876 5567778889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~----------------------------------- 127 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV----------------------------------- 127 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG-----------------------------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh-----------------------------------
Confidence 9999999999999999999998887653 3579999999999986
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+. +...++..++..+++++++|||++|.||+++|+.|.+.+....
T Consensus 128 -----------~~r~-----v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 128 -----------RXRE-----VSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp -----------GGCC-----SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred -----------cccc-----ccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 2222 4445667788888999999999999999999999999886544
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=2.5e-30 Score=200.89 Aligned_cols=170 Identities=12% Similarity=0.259 Sum_probs=132.3
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGA 82 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 82 (253)
.+....+||+|+|++|||||||+++|.+..+.. .+.++.+.... .+ ....+.+.+|||||++.+..++..+++.+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 356778999999999999999999999999888 78888884443 33 34557899999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcc--------cccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 83 MGIMLVYDITNEKSFDNILKWLRNIDEHAN--------EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
|++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+......
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---------------------- 145 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA---------------------- 145 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH----------------------
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH----------------------
Confidence 999999999999999999999998876532 28999999999999722110
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchh-HHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR-GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.+ +.... ...+++..+++++++||++|.||+++|+.|.+.+.++.
T Consensus 146 ---------------------~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 146 ---------------------AE-----LVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp ---------------------HH-----HHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred ---------------------HH-----HHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 00 11111 12223556789999999999999999999999988764
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=5.2e-30 Score=200.36 Aligned_cols=176 Identities=25% Similarity=0.480 Sum_probs=140.1
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
.....+||+|+|++|||||||+++|..+.+...+.++.+. .....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 3456799999999999999999999998888887888763 444566778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+.. .+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~-----------------------------~~ 154 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT-----------------------------IE 154 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHH-----------------------------HH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhh-----------------------------hh
Confidence 99999999999999997 8988888776 78999999999999732110 00
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
...+ . ..+. +..++...+++.++. +++++||++|.|++++|++|.+.+
T Consensus 155 ~~~~---~--~~~~-----v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 155 KLKE---K--KLTP-----ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHH---T--TCCC-----CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hhhc---c--cccc-----ccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0000 0 1111 556678889999985 699999999999999999998754
No 82
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1e-29 Score=192.56 Aligned_cols=166 Identities=20% Similarity=0.338 Sum_probs=130.2
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
....+||+|+|++|||||||+++|..+.+.. +.++.+... ..+.+. ...+.+|||||++.+..++..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 78 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 3567999999999999999999999887754 467776443 344444 56799999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
|+|||++++.++..+..|+..+..... .++|+++|+||+|+..+...
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------------------------------- 126 (171)
T 1upt_A 79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS-------------------------------- 126 (171)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--------------------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH--------------------------------
Confidence 999999999999999998888766532 68999999999999622100
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
.+ +........++..+++++++||++|.|++++|++|.+.+.++
T Consensus 127 -----------~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 127 -----------SE-----MANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp -----------HH-----HHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred -----------HH-----HHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhhc
Confidence 00 111111222334567899999999999999999999988764
No 83
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=4.1e-29 Score=194.45 Aligned_cols=169 Identities=44% Similarity=0.804 Sum_probs=146.3
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
+++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.++++
T Consensus 2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 36689999999999999999999999988888889988888888888899889999999999999998999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
++|||++++.++..+..|+..+......+.|+++++||+|+..
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~------------------------------------- 124 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH------------------------------------- 124 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-------------------------------------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-------------------------------------
Confidence 9999999999999998999888766556799999999999862
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
... ....+++.++...++.++++||+++.|++++|+.|.+.+.+..
T Consensus 125 ---------~~~-----~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 125 ---------LRA-----VPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp ---------GCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ---------ccC-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 121 3334577888889999999999999999999999999887654
No 84
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=8.9e-29 Score=191.40 Aligned_cols=168 Identities=43% Similarity=0.801 Sum_probs=147.3
Q ss_pred ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCc
Q psy9621 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGA 82 (253)
Q Consensus 3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 82 (253)
...++..++|+|+|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+
T Consensus 23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 102 (191)
T 1oix_A 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA 102 (191)
T ss_dssp -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence 44567789999999999999999999999988888899999998888888999888999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 83 MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
+++++|||+++..+++.+..|+..+......+.|+++++||+|+..
T Consensus 103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~---------------------------------- 148 (191)
T 1oix_A 103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH---------------------------------- 148 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG----------------------------------
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc----------------------------------
Confidence 9999999999999999998999888766556789999999999862
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
... .....++.++...++.++++||+++.|++++|+.|.+.+
T Consensus 149 ------------~~~-----~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 149 ------------LRA-----VPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp ------------GCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------ccc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 111 334567888888999999999999999999999998765
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=4.1e-30 Score=198.33 Aligned_cols=166 Identities=20% Similarity=0.352 Sum_probs=130.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+|+|++|||||||+++|.++.+...+.++.+.++.. +. ...+.+.+|||||++.+..++..+++++|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 457999999999999999999999988887888888877653 32 24577999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+..+... .+
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------------------------~~----- 144 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE--------------------------KE----- 144 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH--------------------------HH-----
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCH--------------------------HH-----
Confidence 9999999999999999998886643 268999999999998621000 00
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
+........+...+++++++||++|.|++++|++|.+.+.++
T Consensus 145 -----------------~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 145 -----------------LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp -----------------HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred -----------------HHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 001111111223456899999999999999999999876543
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=5.3e-30 Score=192.95 Aligned_cols=161 Identities=19% Similarity=0.371 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
+||+|+|++|||||||+++|.++.+.. +.||.+... ..+.. ....+.+|||||++.+..++..+++++|++|+||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE--EEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE--EEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877764 467777433 33333 4577999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHh-cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 90 DITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
|++++.++..+..|+..+... ...+.|+++|+||+|+..+...
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~------------------------------------ 119 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA------------------------------------ 119 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH------------------------------------
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCH------------------------------------
Confidence 999999999999998887664 2358999999999998621000
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.+ +........++..+++++++||++|.|++++|++|.+.+..
T Consensus 120 -------~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 120 -------AE-----ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp -------HH-----HHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred -------HH-----HHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 00 11111112222345689999999999999999999987754
No 87
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=1.1e-29 Score=196.74 Aligned_cols=167 Identities=19% Similarity=0.333 Sum_probs=123.8
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
......+||+|+|++|||||||+++|..+.+.. +.||.+.. ...+.. ..+.+.+|||||++.+..++..+++.+|
T Consensus 24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 24 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp TTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEE--EEEEEE--TTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred hccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCcee--EEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 345678999999999999999999999887764 46677633 333444 3478999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+..+... +
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------------------------~--- 149 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPV--------------------------S--- 149 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--------------------------H---
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCH--------------------------H---
Confidence 9999999999999999999998876543 357999999999998621000 0
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
+ +........++..+++++++||++|.|++++|++|.+.+.+
T Consensus 150 --------------~-----i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 150 --------------E-----LTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp --------------H-----HHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred --------------H-----HHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 0 11111122222345689999999999999999999987643
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=5.7e-29 Score=192.12 Aligned_cols=161 Identities=16% Similarity=0.256 Sum_probs=127.4
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCC-CCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA-FNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
....+||+|+|++|||||||+++|.+.. +...+.++.+. ....+.+++ ..+.+|||||++.+..++..+++++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 4567999999999999999999999877 56667777763 334455553 679999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcc---cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHAN---EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 161 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
+|+|||++++.++..+..|+..+..... .++|+++|+||+|+..+
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------------------------- 141 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA-------------------------------- 141 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--------------------------------
Confidence 9999999999999999999998877643 57999999999998621
Q ss_pred HHHHHhhhhhcCCCchhhhhhccchhHHHHHH-----HhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-----EYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
...++..+... ..+++++++||++|.|++++|++|.+.+.+
T Consensus 142 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 142 ---------------------VTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp ---------------------CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred ---------------------CCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 11112222221 235789999999999999999999987644
No 89
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=4.1e-30 Score=197.72 Aligned_cols=169 Identities=21% Similarity=0.357 Sum_probs=125.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcC--CCCCcccCccceeeEEEEEee---CCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDD--AFNTTFISTIGIDFKIKTVDL---KGKKIKLQIWDTAGQERFHTITTSYYRGAM 83 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (253)
.+||+|+|++|||||||+++|.+. .+...+.++++.++....+.+ .+..+.+.+|||+|+++|..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999984 455667888888877665544 235678999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 84 GIMLVYDITNE-KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 84 ~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
++++|||++++ .++..+..|+..+.... .++|+++|+||+|+..+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~--------------------------------- 127 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDE--------------------------------- 127 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCH---------------------------------
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccc---------------------------------
Confidence 99999999997 57999999999987764 57999999999998621
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCc----eEEeeccCCC-CHHHHHHHHHHHHHhccC
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVR----FMETSAKANI-NIEKAFIELATAIYDKTS 226 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Sa~~~~-gi~~l~~~l~~~~~~~~~ 226 (253)
.. ...........+++.++++ ++++||++|. |++++++.|.+.+.....
T Consensus 128 -------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 128 -------------KQ--RKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp -------------HH--HHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred -------------hh--hHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcccc
Confidence 11 0001123445666667776 9999999997 999999999998876443
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.6e-29 Score=192.79 Aligned_cols=161 Identities=16% Similarity=0.261 Sum_probs=125.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+|+|++|||||||+++|.++.+. .+.++.+.+.. .+.++ ...+.+|||||++++..++..+++++|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCE--EEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988777 56777775443 34444 378999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+..+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------------------------------ 132 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC------------------------------------ 132 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC------------------------------------
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC------------------------------------
Confidence 9999999999999999999987753 267999999999998621
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHH-----HHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAI-----AREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
...++..+. .+..+++++++||++|.|++++|++|.+.+....
T Consensus 133 -----------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 133 -----------------MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp -----------------CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred -----------------CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence 001111111 1234578999999999999999999999876544
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=3.2e-29 Score=192.77 Aligned_cols=165 Identities=21% Similarity=0.337 Sum_probs=129.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+|+|++|||||||++++.++. ...+.|+.+... ..+.++ ...+.+|||||++++...+..+++++|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 578999999999999999999999887 666778887443 344444 477999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+..+... ++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------------------------~~----- 139 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--------------------------NA----- 139 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--------------------------HH-----
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCH--------------------------HH-----
Confidence 9999999999999999998887653 267999999999998622100 00
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
+........++..+++++++||++|.|++++|++|.+.+.++
T Consensus 140 -----------------~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 140 -----------------IQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp -----------------HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred -----------------HHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 000000011123457899999999999999999999988764
No 92
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=3.8e-29 Score=194.56 Aligned_cols=171 Identities=16% Similarity=0.223 Sum_probs=118.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+++|++|||||||+++|.++.+. .+.+|.+.+. ..+.+++ ..+.+|||||++.+..++..+++++|++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 44689999999999999999999987765 4567776553 3445554 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.+|..+..|+..+.+.. ..++|+++|+||+|+..+ ...+++.++.
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------------------~~~~~~~~~~ 151 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--------------------------ISEERLREMF 151 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--------------------------CCHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc--------------------------CCHHHHHHHh
Confidence 9999999999999999999887653 368999999999998621 1112222221
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHH--HhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAR--EYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
........ .....+.. ..++++++|||++|.|++++|++|.+.
T Consensus 152 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 152 GLYGQTTG------------KGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TCTTTCCC------------SSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred Cccccccc------------ccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 11100000 00000000 134689999999999999999999764
No 93
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=2.8e-29 Score=193.64 Aligned_cols=166 Identities=17% Similarity=0.308 Sum_probs=129.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+|+|++|||||||++++..+.+.. +.||.+... ..+... ...+.+|||||++.+..++..+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 578999999999999999999999877654 567777443 334443 477999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+..+...
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------------------------------- 141 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASE--------------------------------- 141 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCH---------------------------------
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCH---------------------------------
Confidence 9999999999999999888876643 257999999999999622100
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.+ +........++..+++++++||++|.|++++|+.|.+.+.++.
T Consensus 142 ----------~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 142 ----------AE-----IAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp ----------HH-----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred ----------HH-----HHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhcc
Confidence 00 1111111222334568999999999999999999999987654
No 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=2.5e-29 Score=192.74 Aligned_cols=163 Identities=16% Similarity=0.257 Sum_probs=124.7
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
+....+||+|+|++|||||||+++|.++.+ ..+.++.+.... .+.+++ ..+.+|||||++.+..++..+++.+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 455689999999999999999999998887 556777775543 344443 789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (253)
+|+|||++++.++..+..|+..+.... ..++|+++|+||+|+..+... ++
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------------------------~~--- 142 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV--------------------------AE--- 142 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--------------------------HH---
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCH--------------------------HH---
Confidence 999999999999999999988887653 368999999999998621000 00
Q ss_pred HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
+.........+..+++++++||++|.|++++|++|.+.
T Consensus 143 -------------------i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 143 -------------------ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp -------------------HHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred -------------------HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 00000111112345689999999999999999998753
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=2.4e-29 Score=192.95 Aligned_cols=164 Identities=20% Similarity=0.303 Sum_probs=125.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+++|++|||||||+++|.+..+ ..+.|+.|... ..+.++ .+.+.+|||||++.+..++..+++++|++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 5689999999999999999999998754 34567777443 344444 467999999999999998999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.++..+..|+..+.... ..++|+++++||+|+..+... ++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------------------------~~----- 137 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--------------------------SE----- 137 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--------------------------HH-----
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH--------------------------HH-----
Confidence 9999999999999999988876542 367999999999998622110 00
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
+........+...+++++++||++|.|++++|++|.+.+.+
T Consensus 138 -----------------~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 138 -----------------IAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp -----------------HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred -----------------HHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 00000011112235689999999999999999999987654
No 96
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=1.3e-28 Score=190.23 Aligned_cols=168 Identities=22% Similarity=0.246 Sum_probs=123.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+++|++|||||||++++.++.+. .+.++.+.+. ..+.+++ ..+.+|||||++.+..++..+++.+|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEE--EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 34679999999999999999999988775 4467776543 4455554 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+..+. +.+++.++.
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------------------------~~~~~~~~~ 149 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--------------------------SEAELRSAL 149 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--------------------------CHHHHHHHT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC--------------------------CHHHHHHHh
Confidence 9999999999999999999887653 3689999999999986210 111111111
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.... ...... ++...+++++++||++|.|++++|++|.+.
T Consensus 150 ~~~~--------------~~~~~~-~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 150 GLLN--------------TTGSQR-IEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TCSS--------------CCC----CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CCcc--------------cccccc-ccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 1000 000000 122345789999999999999999998753
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=4.8e-29 Score=193.62 Aligned_cols=170 Identities=17% Similarity=0.227 Sum_probs=124.6
Q ss_pred ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEE--eeC-CeEEEEEEEeCCCcccccccc---h
Q psy9621 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV--DLK-GKKIKLQIWDTAGQERFHTIT---T 76 (253)
Q Consensus 3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~Dt~G~~~~~~~~---~ 76 (253)
..+.+..+||+|+|++|||||||++++.+. +... ++.+.++....+ .+. +..+.+.+|||+|++.|.... .
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 90 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE 90 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence 346778999999999999999999988764 4333 333433332222 232 566889999999999988777 8
Q ss_pred hhhcCccEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 77 SYYRGAMGIMLVYDITNE--KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
.+++++|++|+|||++++ +++..+..|+..+.... .++|+++|+||+|+.....
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~----------------------- 146 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDH----------------------- 146 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHH-----------------------
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhh-----------------------
Confidence 999999999999999997 67777778888775544 6899999999999862100
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH----HhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR----EYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
.....+.+......++++ .+++++++|||++ .||+++|..|++.+
T Consensus 147 ---------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 147 ---------------------KIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred ---------------------hhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 000011145556777787 6788999999999 99999999998865
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=5.5e-29 Score=190.76 Aligned_cols=166 Identities=22% Similarity=0.366 Sum_probs=125.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+|+|++|||||||++++..+.+ ..+.++.+... ..+.++ ...+.+|||||++.+...+..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5789999999999999999999998777 55677777544 334444 377999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+..+.. .++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------------------~~~----- 139 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS--------------------------ASE----- 139 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC--------------------------HHH-----
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCC--------------------------HHH-----
Confidence 9999999999999999998887653 36899999999999862100 000
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
+............+++++++||++|.|++++|++|.+.+.+++
T Consensus 140 -----------------i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 140 -----------------VSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp -----------------HHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence 0000000001123468999999999999999999999887654
No 99
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=7.3e-28 Score=201.38 Aligned_cols=176 Identities=25% Similarity=0.507 Sum_probs=144.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 4568999999999999999999999888888888887555 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.++..+. .|+..+.... .++|+++|+||+|+..... .....
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~-----------------------------~~~~~ 281 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKD-----------------------------TIEKL 281 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHH-----------------------------HHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccc-----------------------------hhhhc
Confidence 999999999999987 7888887765 4899999999999862210 00000
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.+ . ..+. +...+..++++.+++ +++++||++|.|++++|+.|.+.+..
T Consensus 282 ~~---~--~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 282 KE---K--KLTP-----ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HH---T--TCCC-----CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cc---c--cccc-----ccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 00 0 0122 566778899999996 99999999999999999999998865
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=9.5e-31 Score=204.42 Aligned_cols=175 Identities=26% Similarity=0.514 Sum_probs=139.4
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 35679999999999999999999998888877777776444 34455667778899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 86 MLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
|+|||++++.++..+. .|+..+.... .++|+++|+||+|+...+.. ..+
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~-----------------------------~~~ 155 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT-----------------------------IEK 155 (204)
Confidence 9999999999999987 7888887655 48999999999999632110 000
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
..+. ..+. +..++..++++.+++ +++++||++|.|++++|+.|.+.+
T Consensus 156 ~~~~-----~~~~-----v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 156 LKEK-----KLTP-----ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 0000 0011 455667788888887 999999999999999999998765
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.9e-28 Score=197.91 Aligned_cols=165 Identities=24% Similarity=0.393 Sum_probs=125.6
Q ss_pred ccCceeEEEEEcCC---------CCcHHHHHHHhhc---CCCCCcccCcc-ceeeEEEEEe--------------eCCeE
Q psy9621 5 TYDFLFKLLLIGDS---------GVGKTCVLFRFSD---DAFNTTFISTI-GIDFKIKTVD--------------LKGKK 57 (253)
Q Consensus 5 ~~~~~~ki~vvG~~---------~~GKStL~~~l~~---~~~~~~~~~~~-~~~~~~~~~~--------------~~~~~ 57 (253)
+....+||+|+|++ |||||||+++|.+ ..+...+.++. +.++....+. +++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 45678999999999 9999999999998 55655556654 4443322222 34567
Q ss_pred EEEEEEe-----------------------CCCcccccccchhhhc---------------------CccEEEEEEeCCC
Q psy9621 58 IKLQIWD-----------------------TAGQERFHTITTSYYR---------------------GAMGIMLVYDITN 93 (253)
Q Consensus 58 ~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~~ilv~d~~~ 93 (253)
+.+.+|| ++|++.|..++..+++ ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 6777777777777777 7999999999999
Q ss_pred h--hhHHHHHHHHHHHHHh-cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhh
Q psy9621 94 E--KSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE 170 (253)
Q Consensus 94 ~--~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (253)
+ .+|+.+..|+..+... ...++|+++|+||+|+.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~------------------------------------------- 211 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG------------------------------------------- 211 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB-------------------------------------------
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc-------------------------------------------
Confidence 8 9999999999998776 34689999999999985
Q ss_pred hcCCCchhhhhhccchhHHHHHHH-hCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 171 HANEDPQVVNSWVCKHRGEAIARE-YGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
..+. + ++.+++++. .+++++++||++|.|++++|+.|.+.+.
T Consensus 212 ---~~~~-----v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 212 ---VERY-----I--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp ---CHHH-----H--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---ccHH-----H--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 2121 2 356677766 4789999999999999999999998764
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=4.4e-27 Score=177.58 Aligned_cols=153 Identities=17% Similarity=0.220 Sum_probs=114.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc------cchhhhc--
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT------ITTSYYR-- 80 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~-- 80 (253)
.++|+++|++|||||||+++|.+..+.....++.+.+.....+.+.+ ..+.+|||||++.+.. +...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 57999999999999999999998776555455544444444455544 5799999999987752 3355554
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
+++++++|+|+++.+. ...|+..+.. .++|+++|+||+|+...
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~------------------------------- 123 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKS------------------------------- 123 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHH-------------------------------
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccc-------------------------------
Confidence 8999999999988643 3457666654 47999999999998621
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
+. +. .+.+++++.++++++++||++|.|++++|+.|.+.+
T Consensus 124 ---------------~~-----~~-~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 124 ---------------LG-----IE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp ---------------TT-----CC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred ---------------cC-----hh-hHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 11 22 236778888899999999999999999999998765
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=2.6e-27 Score=186.12 Aligned_cols=185 Identities=18% Similarity=0.184 Sum_probs=121.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCe-EEEEEEEeCCCcccccc-cchhhhcCccE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK-KIKLQIWDTAGQERFHT-ITTSYYRGAMG 84 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ 84 (253)
...+||+|+|++|||||||+++|.++.+...+.++ +.++.. +.+++. .+.+.+|||||++.+.. ++..+++++|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 45789999999999999999999998887776544 334433 555543 57899999999999987 78889999999
Q ss_pred EEEEEeCCChh-hHHHHHHHHHHHHHh---cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 85 IMLVYDITNEK-SFDNILKWLRNIDEH---ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 85 ~ilv~d~~~~~-s~~~~~~~~~~i~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
+|+|||+++.. ++..+..|+..+... ...++|+++|+||+|+...+. .+.
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------------------~~~ 135 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--------------------------AKL 135 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--------------------------HHH
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--------------------------HHH
Confidence 99999999854 465555544443322 235799999999999974322 222
Q ss_pred HHHHHHhhhhhc---------CCCchhhhhhccchhHHHHHHHh---CCceEEeeccCC------CCHHHHHHHHHHH
Q psy9621 161 ILKWLRNIDEHA---------NEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKAN------INIEKAFIELATA 220 (253)
Q Consensus 161 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~------~gi~~l~~~l~~~ 220 (253)
...++.+..... ........+.+...+++.++... ++++++|||++| .||+++|++|.+.
T Consensus 136 ~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 136 IQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 222222111100 00000000112233344455433 689999999999 9999999999875
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=1.6e-27 Score=181.71 Aligned_cols=170 Identities=16% Similarity=0.166 Sum_probs=122.3
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG 84 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (253)
.....+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++. .+.+|||||++.+..++..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 4556789999999999999999999998888776666655555555666654 57899999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
+|+|||++++..... +..+......++|+++|+||+|+... ..++...+
T Consensus 82 ~i~v~d~~~~~~~~~----~~~l~~~~~~~~p~ilv~nK~Dl~~~---------------------------~~~~~~~~ 130 (178)
T 2lkc_A 82 VILVVAADDGVMPQT----VEAINHAKAANVPIIVAINKMDKPEA---------------------------NPDRVMQE 130 (178)
T ss_dssp EEEEEETTCCCCHHH----HHHHHHHGGGSCCEEEEEETTTSSCS---------------------------CHHHHHHH
T ss_pred EEEEEECCCCCcHHH----HHHHHHHHhCCCCEEEEEECccCCcC---------------------------CHHHHHHH
Confidence 999999988432222 12222223357999999999998621 00111111
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKTSG 227 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 227 (253)
.. ....+++.++ ++++++||++|.|++++|++|.+.+......
T Consensus 131 ~~--------------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 131 LM--------------------EYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp HT--------------------TTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred HH--------------------hcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence 00 0111122233 6899999999999999999999988775543
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=199.32 Aligned_cols=165 Identities=19% Similarity=0.360 Sum_probs=121.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM 86 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (253)
...+||+|+|++|||||||+++|..+.+... .||.+..+. .+.. ..+.+.+|||||++.|..++..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999998887654 467665543 2333 3477999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621 87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL 165 (253)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (253)
+|||++++.+|..+..|+..+.... ..++|+++|+||+|+..+... .+
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--------------------------~~----- 286 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA--------------------------AE----- 286 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--------------------------HH-----
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH--------------------------HH-----
Confidence 9999999999999998887775543 358999999999998622110 00
Q ss_pred HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
+........++..+++++++||++|.||+++|+.|.+.+.++
T Consensus 287 -----------------i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 287 -----------------ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp -----------------HHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred -----------------HHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence 111111111223356899999999999999999999987653
No 106
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.8e-27 Score=195.81 Aligned_cols=163 Identities=16% Similarity=0.177 Sum_probs=121.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCC---cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc---cchhhhcCccE
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNT---TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT---ITTSYYRGAMG 84 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~ 84 (253)
||+++|+.|||||||++++.++.++. .+.+|+|.++.. + + ..+.+++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999887654433 256788877753 2 2 347899999999999964 46889999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621 85 IMLVYDITNE--KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162 (253)
Q Consensus 85 ~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (253)
+|+|||++++ +.+.....|+..+.... +++|++++|||+|+..+.
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~-------------------------------- 122 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSED-------------------------------- 122 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSH--------------------------------
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchh--------------------------------
Confidence 9999999998 33344444455554443 689999999999996210
Q ss_pred HHHHhhhhhcCCCchhhhhhccchhHHHHHHH----hCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIARE----YGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
.+...-+.+..++++++++. +++++++|||++ .+|.++|..+++.+..+
T Consensus 123 ------------~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 123 ------------FKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp ------------HHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred ------------hhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence 01111122556667778875 679999999998 59999999998876543
No 107
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=6.3e-26 Score=180.15 Aligned_cols=168 Identities=18% Similarity=0.140 Sum_probs=115.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc---------cccchh
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF---------HTITTS 77 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~ 77 (253)
...+||+|+|++|||||||+++|.+..+.....+....+......... ...+.+|||||+... ......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 568999999999999999999999877653322221112222222222 367999999998321 111234
Q ss_pred hhcCccEEEEEEeCCChhhHHH--HHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621 78 YYRGAMGIMLVYDITNEKSFDN--ILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE 155 (253)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (253)
++..+|++|+|||++++.++.. ...|+..+.... .++|+++|+||+|+...
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~-------------------------- 157 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNM-------------------------- 157 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC---------------------------
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCc--------------------------
Confidence 5788999999999999887652 335666654432 47999999999999622
Q ss_pred cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
... .........+++...+ ++++++||++|.|++++|+.|.+.+.+..
T Consensus 158 --------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 158 --------------------DSL--SIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp ---------------------CC--CHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred --------------------hhh--HHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 110 0011234566777777 89999999999999999999999887654
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=6.1e-26 Score=199.85 Aligned_cols=169 Identities=21% Similarity=0.373 Sum_probs=127.4
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI 85 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (253)
....+||+|+|.+|||||||+++|.++.+.. +.+|++.++. .+.. ..+.+.+|||+|++.+..++..+++.+|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--EEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--EEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 3467999999999999999999999888654 4677775554 3333 446799999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621 86 MLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 164 (253)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
|+|||++++.+|..+..|+..+..... .++|++||+||+|+...... .+
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--------------------------~~---- 443 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP--------------------------HE---- 443 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCH--------------------------HH----
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCH--------------------------HH----
Confidence 999999999999999999988866532 58999999999998621100 00
Q ss_pred HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621 165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSG 227 (253)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 227 (253)
+............+++++++||++|.||+++|++|.+.+..+...
T Consensus 444 ------------------~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 444 ------------------IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp ------------------HHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-----
T ss_pred ------------------HHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 101111111122345799999999999999999999887665533
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=2.1e-26 Score=178.23 Aligned_cols=164 Identities=13% Similarity=0.141 Sum_probs=110.1
Q ss_pred ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCC----------ccccc
Q psy9621 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG----------QERFH 72 (253)
Q Consensus 3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~ 72 (253)
..+....+||+|+|++|||||||+++|.+..+...+.++.+.+........+. .+.+||||| ++.+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG 93 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHH
Confidence 44566789999999999999999999998876665566666555444444433 589999999 66677
Q ss_pred ccchhhhcCc---cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEE
Q psy9621 73 TITTSYYRGA---MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV 149 (253)
Q Consensus 73 ~~~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (253)
.++..+++.+ |++++|+|++++.++.... ++..+.. .++|+++|+||+|+...
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~-------------------- 149 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPK-------------------- 149 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCG--------------------
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCh--------------------
Confidence 7777777776 9999999999987776643 2222222 57899999999998621
Q ss_pred EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHH-HHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA-IAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.... ....+..+ ++...+.+++++||++|.|++++|++|.+.+.
T Consensus 150 --------------------------~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 150 --------------------------GKWD---KHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp --------------------------GGHH---HHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred --------------------------HHHH---HHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 1100 00111222 33334679999999999999999999988764
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=8.3e-26 Score=173.81 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=122.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc------ccchhhhc-
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH------TITTSYYR- 80 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~- 80 (253)
..+||+|+|++|||||||+++|.+..+.....++...+.....+...+ ..+.+|||||++.+. .+...+++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 568999999999999999999998766555556555555555555554 679999999998875 33455554
Q ss_pred -CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621 81 -GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159 (253)
Q Consensus 81 -~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (253)
.++++++|+|.++ ++....|+..+.. .+.|+++++||+|+...
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~------------------------------ 127 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKS------------------------------ 127 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH------------------------------
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc------------------------------
Confidence 5999999999875 5556677777654 47899999999998621
Q ss_pred hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.. +. ...+++++.++++++++||+++.|++++|+.|.+.+....
T Consensus 128 ----------------~~-----~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 128 ----------------LG-----IE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp ----------------TT-----CC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred ----------------cc-----ch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 11 11 3567888889999999999999999999999999887654
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=7.6e-26 Score=187.29 Aligned_cols=166 Identities=18% Similarity=0.288 Sum_probs=127.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCC---CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc-----cccchhhh
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFN---TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF-----HTITTSYY 79 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~ 79 (253)
..+||+++|++|||||||++++.++... ..+.+|++.++.. +.+.+ .+.+.+|||||++.+ ..++..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999876322 2456777766653 33333 678999999999988 77888899
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHHhc--ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621 80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHA--NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 157 (253)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (253)
+++|++|+|||++++.+++.+..|...+.... ..++|+++++||+|+....
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~--------------------------- 131 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLD--------------------------- 131 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHH---------------------------
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchh---------------------------
Confidence 99999999999999999999987765554432 2689999999999986210
Q ss_pred hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC---CceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG---VRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.+.. ...+...++.++++.+| ++++++||++ .|+.++|..+++.+.
T Consensus 132 -----------------~r~~-~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 132 -----------------KREE-LFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp -----------------HHHH-HHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred -----------------hhhH-HHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 0100 00034467788999987 7999999999 899999998877543
No 112
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.93 E-value=3.6e-26 Score=175.97 Aligned_cols=156 Identities=19% Similarity=0.296 Sum_probs=118.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCC-----------cccccccchhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG-----------QERFHTITTSY 78 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~~ 78 (253)
+||+|+|++|||||||+++|.+..+...+.++..... ..+... .+.+||||| ++.+..++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6999999999999999999999888777666544333 333333 589999999 56666677777
Q ss_pred hcC-ccEEEEEEeCCChhhHHHH-HHHHHH--------HHH-hcccccceeEEeeeeccccccccccccccccccceeeE
Q psy9621 79 YRG-AMGIMLVYDITNEKSFDNI-LKWLRN--------IDE-HANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM 147 (253)
Q Consensus 79 ~~~-~d~~ilv~d~~~~~s~~~~-~~~~~~--------i~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (253)
++. +++++++|++.+..++..+ ..|... +.. ....++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------------- 136 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK------------------- 136 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCS-------------------
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccC-------------------
Confidence 777 8888888888888888776 566542 222 2235799999999999861
Q ss_pred EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCc-------eEEeeccCCCCHHHHHHHHHHH
Q psy9621 148 LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVR-------FMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.. ....+++++.++.+ ++++||++|.|++++|++|.+.
T Consensus 137 ---------------------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 181 (190)
T 2cxx_A 137 ---------------------------NV--------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV 181 (190)
T ss_dssp ---------------------------CH--------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred ---------------------------cH--------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHh
Confidence 11 23466777777764 6999999999999999999999
Q ss_pred HHhcc
Q psy9621 221 IYDKT 225 (253)
Q Consensus 221 ~~~~~ 225 (253)
+.+.+
T Consensus 182 ~~~~~ 186 (190)
T 2cxx_A 182 IRERQ 186 (190)
T ss_dssp HHHC-
T ss_pred cchhh
Confidence 87754
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=2.4e-26 Score=174.75 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=113.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc--------hhh
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT--------TSY 78 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 78 (253)
..+||+|+|++|||||||+++|.+..+. ....++...++....+.+++. .+.+|||||...+.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4579999999999999999999976542 222233344555566666653 48999999987543211 135
Q ss_pred hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
++.+|++|+|||++++.++. ...|+..+......++|+++|+||+|+..+
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~----------------------------- 130 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGE----------------------------- 130 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCC-----------------------------
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcc-----------------------------
Confidence 78999999999999988876 357777777765567999999999998511
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.. .+++..+.+++++||++|.|++++|+.|.+.+..
T Consensus 131 -----------------~~------------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 131 -----------------TL------------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp -----------------CC------------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred -----------------hh------------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 00 0011235689999999999999999999887643
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=1.5e-25 Score=167.92 Aligned_cols=150 Identities=13% Similarity=0.141 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc-------cccchhhhcC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF-------HTITTSYYRG 81 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~ 81 (253)
+||+++|++|||||||++++.+..+. ....+....+.....+...+. .+.+|||||+..+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 69999999999999999999987643 222233333444445555543 6899999998873 3344567899
Q ss_pred ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621 82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 161 (253)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
+|++|+|+|++++.+... .++..+... .++|+++|+||+|+..+
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~-------------------------------- 123 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKH-------------------------------- 123 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGG--------------------------------
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccc--------------------------------
Confidence 999999999998644332 233332222 47999999999998621
Q ss_pred HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
.+...+++ ++++ +++++||++|.|++++|++|.+.+
T Consensus 124 -----------------------~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 124 -----------------------ELYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp -----------------------GGGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred -----------------------hHhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 11223344 5666 899999999999999999998764
No 115
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=4e-25 Score=170.71 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=116.6
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCC----------ccc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG----------QER 70 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~ 70 (253)
|...+....+||+|+|++|||||||+++|.+..+. .+.++.+.+........+ ..+.+||||| ++.
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~ 90 (195)
T 3pqc_A 15 PGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERML 90 (195)
T ss_dssp TTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHH
T ss_pred hhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHH
Confidence 34556778899999999999999999999987733 334555544443333333 2478999999 556
Q ss_pred ccccchhhhcCc---cEEEEEEeCCChhhH--HHHHHHHHHHHHhcccccceeEEeeeecccccccccccccccccccee
Q psy9621 71 FHTITTSYYRGA---MGIMLVYDITNEKSF--DNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMG 145 (253)
Q Consensus 71 ~~~~~~~~~~~~---d~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~ 145 (253)
+..++..+++.+ +++++|+|+++..+. ..+..|+.. .++|+++|+||+|+....
T Consensus 91 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~--------------- 149 (195)
T 3pqc_A 91 WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMS--------------- 149 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGG---------------
T ss_pred HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChH---------------
Confidence 666677777665 999999999876433 333344433 279999999999986210
Q ss_pred eEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 146 IMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
... ...+...+++...+ ++++++||++|.|++++|++|.+.+.+
T Consensus 150 -----------------------------~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 150 -----------------------------ERA-----KKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp -----------------------------GHH-----HHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred -----------------------------HHH-----HHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 011 23344556666644 799999999999999999999988754
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=1.4e-24 Score=175.25 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=117.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc------chhhh--
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI------TTSYY-- 79 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~-- 79 (253)
..+||+|+|++|||||||+++|.+..+.....|...++.....+.. ....+.+|||||...+... ...++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY--KGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE--CCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999987765444454443433333333 3467999999999877653 24555
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621 80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159 (253)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (253)
..+|++|+|+|+++.++.. .|...+.. .++|+++++||+|+...
T Consensus 82 ~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~------------------------------ 125 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKK------------------------------ 125 (258)
T ss_dssp SCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHH------------------------------
T ss_pred cCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCc------------------------------
Confidence 5899999999999876543 35555543 47999999999998621
Q ss_pred hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.. +. ....++++.++++++++||++|.|++++|+.|.+.+.
T Consensus 126 ----------------~~-----i~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 126 ----------------TG-----MK-IDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp ----------------TT-----CC-BCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----------------cc-----hH-HHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 11 22 2367889999999999999999999999999998765
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=4.7e-26 Score=202.06 Aligned_cols=165 Identities=22% Similarity=0.289 Sum_probs=123.1
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEE------Eee--CCeEEEEEEEeCCCcccccccchh
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKT------VDL--KGKKIKLQIWDTAGQERFHTITTS 77 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~Dt~G~~~~~~~~~~ 77 (253)
....+||+++|.+|||||||++++.+..+...+.++.+.++.... +.+ .+..+.+.+|||||++.+..+...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999999988888899988776542 222 234578999999999999999999
Q ss_pred hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621 78 YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 157 (253)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (253)
+++.+|++|+|||+++. +.+..|+..+..+. .+.|+++|+||+|+.
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~------------------------------ 163 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDEN------------------------------ 163 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTC------------------------------
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcc------------------------------
Confidence 99999999999999765 45667888887775 579999999999987
Q ss_pred hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.... +..+..++++...+.+++++||++|.|++++|+.|.+.+....
T Consensus 164 ----------------~~~~-----v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 164 ----------------PSYN-----IEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp ----------------TTCC-----CCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred ----------------cccc-----cCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 2222 4455677777888899999999999999999999999887644
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=5.2e-25 Score=178.89 Aligned_cols=154 Identities=19% Similarity=0.183 Sum_probs=115.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc------ccchhhhc-
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH------TITTSYYR- 80 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~- 80 (253)
..+||+++|++|||||||+++|.+........| |.++......+.. ...+.+|||||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 468999999999999999999998764443334 3334334444554 5679999999998775 34455665
Q ss_pred -CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621 81 -GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159 (253)
Q Consensus 81 -~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (253)
.+|++|+|+|+++.++. ..|...+.. .++|+++++||+|+...
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~------------------------------ 122 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDG------------------------------ 122 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHH------------------------------
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCc------------------------------
Confidence 69999999999886544 345555544 47999999999998621
Q ss_pred hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.. +. .....+++.++++++++||++|.|++++|+.|.+.+.
T Consensus 123 ----------------~~-----~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 123 ----------------QG-----KK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp ----------------TT-----CC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred ----------------CC-----cH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 11 22 3467888899999999999999999999999987653
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=6e-25 Score=177.21 Aligned_cols=151 Identities=17% Similarity=0.125 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc----------cchhhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT----------ITTSYY 79 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~ 79 (253)
.||+++|.+|||||||+++|.+..+.....|....+.....+.+.+. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988766555666666666666666654 799999999977754 345566
Q ss_pred --cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621 80 --RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 157 (253)
Q Consensus 80 --~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (253)
..+|++|+|+|+++.++...+..++. ..++|+++++||+|+...
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~---------------------------- 125 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEH---------------------------- 125 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHH----------------------------
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCc----------------------------
Confidence 89999999999998766555444332 247999999999998622
Q ss_pred hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
.. . ......+++.++++++++||++|.|++++|+.|.+.
T Consensus 126 ------------------~~-----~-~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 126 ------------------RG-----I-SIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ------------------TT-----C-EECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ------------------CC-----c-HHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 11 1 123566888899999999999999999999999887
No 120
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.92 E-value=4.1e-24 Score=176.91 Aligned_cols=166 Identities=12% Similarity=0.035 Sum_probs=123.3
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCe-EEEEEEEeCCCccccc----------c
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK-KIKLQIWDTAGQERFH----------T 73 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~----------~ 73 (253)
+..+.-.|+++|.+|||||||+|+|++..+..... ..+.+........... ..++.+|||||...+. .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~-~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISP-KAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCC-CCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 45567799999999999999999999887653311 1122222121112222 5679999999986654 4
Q ss_pred cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEecc
Q psy9621 74 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDIT 153 (253)
Q Consensus 74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (253)
....+++.+|++++|+|++++.+......|++.+.. .++|+++|+||+|+.
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~-------------------------- 135 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKI-------------------------- 135 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGS--------------------------
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCC--------------------------
Confidence 456778999999999999999888887777777655 469999999999985
Q ss_pred CccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 154 NEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.... ........+.+.++ .+++++||++|.|++++|+.|.+.+....
T Consensus 136 --------------------~~~~-----~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 136 --------------------GPAK-----NVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp --------------------SSGG-----GGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred --------------------CCHH-----HHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCC
Confidence 1222 33345566777765 78999999999999999999999886543
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=1.2e-24 Score=171.89 Aligned_cols=171 Identities=11% Similarity=0.063 Sum_probs=112.2
Q ss_pred CccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCc----------cc
Q psy9621 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQ----------ER 70 (253)
Q Consensus 2 ~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~----------~~ 70 (253)
...+....++|+|+|.+|||||||+++|++........+..+.+.......+. .....+.+|||||. +.
T Consensus 22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence 44566778999999999999999999999876322222333333333333333 34467999999995 33
Q ss_pred ccccchhhhcC---ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeE
Q psy9621 71 FHTITTSYYRG---AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM 147 (253)
Q Consensus 71 ~~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (253)
+..+...+++. +|++|+|+|++++.+.. ...|+..+.. .++|+++|+||+|+...+..
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~--------------- 162 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQES--------------- 162 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHH---------------
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhH---------------
Confidence 34555566655 88899999998754422 2344444433 57899999999998621100
Q ss_pred EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHH-HHHHH------hCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 148 LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE-AIARE------YGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
. ....... .+... .+.+++++||++|.|++++|+.|.+.
T Consensus 163 --------------~--------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 208 (223)
T 4dhe_A 163 --------------I--------------------NALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESW 208 (223)
T ss_dssp --------------H--------------------HHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred --------------H--------------------HHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHh
Confidence 0 0011111 22221 45799999999999999999999998
Q ss_pred HHhcc
Q psy9621 221 IYDKT 225 (253)
Q Consensus 221 ~~~~~ 225 (253)
+....
T Consensus 209 ~~~~~ 213 (223)
T 4dhe_A 209 LRPAA 213 (223)
T ss_dssp HC---
T ss_pred cCccC
Confidence 86543
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=1e-23 Score=171.70 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=121.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc------cchhhh--c
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT------ITTSYY--R 80 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~ 80 (253)
.+||+++|++|||||||+++|.+..+.....++.+.+.....+...+. .+.+|||||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 689999999999999999999988776566666666666666666554 499999999987765 445555 6
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
.+|++|+|+|+++.. ....|...+... ..+|+++++||+|+...
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~------------------------------- 124 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKK------------------------------- 124 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHH-------------------------------
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcc-------------------------------
Confidence 899999999998863 223344444332 23999999999998621
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.. .. .....+++.++++++++||++|.|++++|..+.+.+....
T Consensus 125 ---------------~~-----~~-~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 125 ---------------KG-----AK-IDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp ---------------HT-----CC-CCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred ---------------cc-----cH-HHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhccc
Confidence 11 11 1367888899999999999999999999999999876543
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=2.4e-24 Score=175.50 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=116.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc----------chhh
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI----------TTSY 78 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~ 78 (253)
.++|+++|.+|||||||+++|.+..+.....+....+.....+...+ ..+.+|||||...+... ...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999998876555556555555555555554 45889999999876632 2223
Q ss_pred --hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621 79 --YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK 156 (253)
Q Consensus 79 --~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (253)
.+.+|++|+|+|+++.++...+..++.+ .++|+++|+||+|+...
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~------~~~p~ivv~NK~Dl~~~--------------------------- 127 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLLE------LGIPCIVALNMLDIAEK--------------------------- 127 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHHH------HTCCEEEEEECHHHHHH---------------------------
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHHh------cCCCEEEEEECccchhh---------------------------
Confidence 2799999999999986655444444333 27999999999998621
Q ss_pred chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.. . ......+++.++++++++||++|.|++++|+.|.+.+..
T Consensus 128 -------------------~~-----~-~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 128 -------------------QN-----I-RIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp -------------------TT-----E-EECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred -------------------hh-----H-HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 11 1 123577888899999999999999999999998876544
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=2e-25 Score=175.85 Aligned_cols=119 Identities=17% Similarity=0.291 Sum_probs=94.2
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc---ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchh
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT---FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTS 77 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 77 (253)
|........+||+|+|++|||||||+++|.+..+... +.++.+.++ ....+.+|||||++.+...+..
T Consensus 4 ~~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~ 74 (218)
T 1nrj_B 4 MGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSD 74 (218)
T ss_dssp ------CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHH
T ss_pred CCCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHH
Confidence 4555677889999999999999999999998776542 334333222 4457999999999999888888
Q ss_pred hhcC----ccEEEEEEeCC-ChhhHHHHHHHHHHHHHhc----ccccceeEEeeeecccc
Q psy9621 78 YYRG----AMGIMLVYDIT-NEKSFDNILKWLRNIDEHA----NEDVEKMILGKTKDTAG 128 (253)
Q Consensus 78 ~~~~----~d~~ilv~d~~-~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~ 128 (253)
+++. ++++|+|||++ ++.++..+..|+..+.... ..++|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 8887 89999999999 8899999999988887653 36899999999999973
No 125
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.89 E-value=7.9e-24 Score=181.23 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=115.3
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc----
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT---- 75 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---- 75 (253)
|...+....+||+|+|+.|+|||||+++|++..+.. ...+....+.....+.+... ..+.+|||||+..+..+.
T Consensus 26 m~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~ 104 (423)
T 3qq5_A 26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRV 104 (423)
T ss_dssp CCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCH
T ss_pred cccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHH
Confidence 455677889999999999999999999999877632 22233333444455555543 369999999998876552
Q ss_pred ---hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621 76 ---TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI 152 (253)
Q Consensus 76 ---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (253)
..+++.+|++|+|+|++... ....|+..+... ++|+++|+||+|+.
T Consensus 105 ~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~------------------------- 153 (423)
T 3qq5_A 105 EKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVL------------------------- 153 (423)
T ss_dssp HHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTT-------------------------
T ss_pred HHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCC-------------------------
Confidence 44788999999999984332 334566666553 79999999999986
Q ss_pred cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
.... .+..+++++.++++++++||++|.|++++|+.|.+.+.+.
T Consensus 154 ---------------------~~~~-------~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 154 ---------------------GEKA-------EELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp ---------------------TCCC-------THHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred ---------------------CccH-------HHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 2221 1345566667789999999999999999999999988655
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=4.1e-23 Score=178.76 Aligned_cols=167 Identities=13% Similarity=0.091 Sum_probs=112.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCc----------ccccccc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ----------ERFHTIT 75 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~ 75 (253)
+..+||+++|++|||||||+++|++.... ....+....+.....+..++. .+.+|||||+ +.|..++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 45799999999999999999999987653 222233333443344555554 4899999997 3343333
Q ss_pred h-hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621 76 T-SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN 154 (253)
Q Consensus 76 ~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (253)
. .+++.+|++|+|+|++++.+++.. .|+..+.. .+.|+++|+||+|+..
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~-------------------------- 300 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVD-------------------------- 300 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSC--------------------------
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCC--------------------------
Confidence 3 478899999999999998887775 46666543 5799999999999862
Q ss_pred ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
.+............+.++...+++++++||++|.|++++|+.+.+.+....
T Consensus 301 --------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 301 --------------------KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp --------------------CCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred --------------------cchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 111000001111112222223589999999999999999999998887644
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=1.3e-22 Score=167.23 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=107.9
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-ccCccceeeEEEEEeeCCeEEEEEEEeCCCccc--------c
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER--------F 71 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~ 71 (253)
|+.. -...+|+++|.+|||||||+|+|++..+... ..+....+.....+ .....++.+|||||... +
T Consensus 1 m~~~--~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~--~~~~~~l~l~DTpG~~~~~~~l~~~~ 76 (301)
T 1wf3_A 1 MAEK--TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL--TEGRRQIVFVDTPGLHKPMDALGEFM 76 (301)
T ss_dssp --CC--CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE--EETTEEEEEEECCCCCCCCSHHHHHH
T ss_pred CCCC--ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEE--EeCCcEEEEecCccccchhhHHHHHH
Confidence 5553 3456899999999999999999998876532 22211111111112 22356799999999876 3
Q ss_pred cccchhhhcCccEEEEEEeCCChhhHHHHHHHH-HHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEE
Q psy9621 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVY 150 (253)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (253)
......+++.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+..
T Consensus 77 ~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~---------------------- 131 (301)
T 1wf3_A 77 DQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAK---------------------- 131 (301)
T ss_dssp HHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCS----------------------
T ss_pred HHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCC----------------------
Confidence 344556789999999999999875543 3444 3444332 4799999999999861
Q ss_pred eccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH-hC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 151 DITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE-YG-VRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
... . ..+..+. .+ .+++++||++|.|++++++.|.+.+..
T Consensus 132 ------------------------~~~-----~----~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 132 ------------------------YPE-----E----AMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp ------------------------SHH-----H----HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred ------------------------chH-----H----HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 111 0 1111222 23 478999999999999999999887654
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.88 E-value=1.2e-21 Score=165.52 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=117.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc---------cchh
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT---------ITTS 77 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------~~~~ 77 (253)
...++|+++|++|||||||+++|.+..+.....+....+.....+... ...+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999999876432222211112222222222 35699999999854321 1123
Q ss_pred hhcCccEEEEEEeCCChh--hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621 78 YYRGAMGIMLVYDITNEK--SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE 155 (253)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (253)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+..
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~--------------------------- 294 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVAD--------------------------- 294 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCC---------------------------
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCC---------------------------
Confidence 445799999999999887 68888889988877653 899999999999861
Q ss_pred cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
... + +...++++..+++++++||++|+|+++++++|.+.+...
T Consensus 295 -------------------~~~-----~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 295 -------------------EEN-----I--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp -------------------HHH-----H--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred -------------------hHH-----H--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 111 1 234556667789999999999999999999999887553
No 129
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=1.1e-22 Score=169.86 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=117.6
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCc-c-cCccceeeEEEEEeeCCeEEEEEEEeCCCcc----cccccchhhhcC--
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTT-F-ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE----RFHTITTSYYRG-- 81 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~-- 81 (253)
.+|+|+|.+|||||||+++|+....... + ..|.. .....+.+.+ ...+.+|||||.. ++..+...|++.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~--p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLV--PNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCC--CCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccC--ceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 3689999999999999999997654321 1 12222 2222344443 2469999999963 455566666554
Q ss_pred -ccEEEEEEeCCC---hhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621 82 -AMGIMLVYDITN---EKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE 155 (253)
Q Consensus 82 -~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (253)
++++|+|+|+++ +.+++.+..|+.++..+.. .++|+++|+||+|+..
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~--------------------------- 288 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE--------------------------- 288 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT---------------------------
T ss_pred hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC---------------------------
Confidence 999999999998 7889999999999887642 5799999999999861
Q ss_pred cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
..+..+++++.+. .+++++||+++.|+++++..|.+.+.+..
T Consensus 289 ----------------------------~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 289 ----------------------------AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp ----------------------------HHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred ----------------------------CHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence 1123455666665 78999999999999999999999886543
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.88 E-value=4.2e-22 Score=173.24 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=97.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc--------hhh
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT--------TSY 78 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 78 (253)
..+||+|+|++|||||||+|+|.+.... ....+....+.....+.+++ ..+.+|||||..++...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 4589999999999999999999986432 22233333344444555554 569999999987765443 336
Q ss_pred hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
++.+|++|+|+|++++.++..+..+...+.. . .+.|+++|+||+|+.
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l-~~~piIvV~NK~Dl~------------------------------- 356 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAA-H-PAAKFLTVANKLDRA------------------------------- 356 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-C-TTSEEEEEEECTTSC-------------------------------
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHh-c-CCCCEEEEEECcCCC-------------------------------
Confidence 7899999999999998877543333222222 2 279999999999986
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
.... . ..+++.+....+++++||++|.|++++|+.|.+.+.
T Consensus 357 ---------------~~~~-----~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 357 ---------------ANAD-----A---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ---------------TTTH-----H---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ---------------Cccc-----h---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 2221 1 113344433478999999999999999999999887
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=9.9e-22 Score=170.25 Aligned_cols=176 Identities=18% Similarity=0.255 Sum_probs=112.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc---------cccchhhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF---------HTITTSYY 79 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~ 79 (253)
.+|+++|.+|||||||+|+|.+.... ....+.+..+.....+.+.+. .+.+|||||.+.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987643 222333333444455556654 5899999997642 33456688
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621 80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159 (253)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (253)
+.+|++|+|+|++++.+... .++..+.+. .++|+++|+||+|+..
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~------------------------------- 124 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLR------------------------------- 124 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHH-------------------------------
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCcc-------------------------------
Confidence 99999999999987655433 222222222 3789999999999751
Q ss_pred hHHHHHHhhhhhcCCCchhhhhhccchhH-HHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccCC-CC--CCCCC
Q psy9621 160 NILKWLRNIDEHANEDPQVVNSWVCKHRG-EAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTSG-RD--PLEAP 234 (253)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~-~~--~~~~~ 234 (253)
. . .... .++. .+++ +++++||++|.|++++|+.+.+.+.+.... .. .....
T Consensus 125 ---------------~-------~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~ 180 (439)
T 1mky_A 125 ---------------E-------F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDA 180 (439)
T ss_dssp ---------------H-------H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSC
T ss_pred ---------------c-------c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccC
Confidence 0 0 0111 2333 4565 789999999999999999999988754311 11 12223
Q ss_pred CeEeecCCCCCC
Q psy9621 235 DRVTIDKKPDRG 246 (253)
Q Consensus 235 ~~~~~~~~~~~~ 246 (253)
.++.+-..++.|
T Consensus 181 ~kvaivG~~gvG 192 (439)
T 1mky_A 181 IKVAIVGRPNVG 192 (439)
T ss_dssp EEEEEECSTTSS
T ss_pred ceEEEECCCCCC
Confidence 455555555555
No 132
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=4.1e-22 Score=173.44 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=113.5
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCC-CCcccCccceeeEEEEEeeCCeEEEEEEEeCCC----------ccccccc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAF-NTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG----------QERFHTI 74 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~ 74 (253)
.+..+||+++|.+|+|||||+++|.+... .....++...+.....+..++. .+.+||||| ++.|..+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 35679999999999999999999996542 2222233333333344445544 699999999 5666655
Q ss_pred ch-hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEecc
Q psy9621 75 TT-SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDIT 153 (253)
Q Consensus 75 ~~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (253)
+. .+++.+|++|+|+|+++..+- ....|...+.. .+.|+++|+||+|+.
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~-------------------------- 319 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAV-------------------------- 319 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGS--------------------------
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcC--------------------------
Confidence 54 378899999999999875442 22345555443 479999999999987
Q ss_pred CccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh-----CCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 154 NEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY-----GVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+. ...++..+.+++. +++++++||++|.|++++|+.+.+.+.....
T Consensus 320 --------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 320 --------------------DKDE-----STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp --------------------CCCS-----SHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred --------------------CCch-----HHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 2222 2233334444443 4799999999999999999999998866543
No 133
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=4.4e-21 Score=164.43 Aligned_cols=163 Identities=14% Similarity=0.112 Sum_probs=115.3
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEe---------------------e---CCeEEE
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVD---------------------L---KGKKIK 59 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~~~~~~ 59 (253)
......+||+++|++|+|||||+++|.+...... .+ +...+.. . ......
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LG--YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR 76 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SE--EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cC--ccccceeeccccccccceecccccccccccccccccce
Confidence 3456789999999999999999999987433221 11 1111110 0 112367
Q ss_pred EEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccc
Q psy9621 60 LQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSY 139 (253)
Q Consensus 60 ~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 139 (253)
+.+|||||++.|......++..+|++|+|+|+++..++.....++..+.... ..|+++++||+|+...+
T Consensus 77 ~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~--------- 145 (403)
T 3sjy_A 77 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKE--------- 145 (403)
T ss_dssp EEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHH---------
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchH---------
Confidence 9999999999999888889999999999999998876777777776665442 35899999999986210
Q ss_pred cccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeeccCCCCHHHHHHH
Q psy9621 140 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKANINIEKAFIE 216 (253)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~ 216 (253)
....+ .++..++.+.. +++++++||++|.|+++|++.
T Consensus 146 --------------------~~~~~--------------------~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~ 185 (403)
T 3sjy_A 146 --------------------EALSQ--------------------YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEG 185 (403)
T ss_dssp --------------------HHHHH--------------------HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHH
T ss_pred --------------------HHHHH--------------------HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHH
Confidence 00001 11122222222 478999999999999999999
Q ss_pred HHHHHHh
Q psy9621 217 LATAIYD 223 (253)
Q Consensus 217 l~~~~~~ 223 (253)
|.+.+..
T Consensus 186 l~~~l~~ 192 (403)
T 3sjy_A 186 IEEYIKT 192 (403)
T ss_dssp HHHHSCC
T ss_pred HHHhCCC
Confidence 9887643
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=1.2e-22 Score=175.88 Aligned_cols=176 Identities=11% Similarity=0.089 Sum_probs=111.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc--------cccccchhhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE--------RFHTITTSYYR 80 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~ 80 (253)
..+|+++|.+|||||||+++|.+..+... .++.|++..............+.+|||||.+ .+......+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 36899999999999999999998665422 3444554444444444445679999999985 45566677899
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
.+|++|+|+|++++.+... .++..+.+ ..+.|+++|+||+|+...
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~------------------------------- 126 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEM------------------------------- 126 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC----------------------------------
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccc-------------------------------
Confidence 9999999999998766544 33333333 257899999999998621
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEee
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTI 239 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (253)
.. ...++. .+++ +++++||++|.|++++++.+.+.+.+.... ...+...++.+
T Consensus 127 ---------------~~---------~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~-~~~~~~~ki~l 180 (436)
T 2hjg_A 127 ---------------RA---------NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPET-KYNEEVIQFCL 180 (436)
T ss_dssp --------------------------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSS-CCCTTCEEEEE
T ss_pred ---------------hh---------hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccc-cccccCcEEEE
Confidence 10 001111 2354 789999999999999999999888653211 11223346666
Q ss_pred cCCCCCC
Q psy9621 240 DKKPDRG 246 (253)
Q Consensus 240 ~~~~~~~ 246 (253)
-..++-|
T Consensus 181 vG~~nvG 187 (436)
T 2hjg_A 181 IGRPNVG 187 (436)
T ss_dssp ECSTTSS
T ss_pred EcCCCCC
Confidence 6666655
No 135
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=155.04 Aligned_cols=172 Identities=14% Similarity=0.152 Sum_probs=108.7
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccC--ccceeeEEEEEeeCCeEEEEEEEeCCCcc-----------c
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFIS--TIGIDFKIKTVDLKGKKIKLQIWDTAGQE-----------R 70 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~ 70 (253)
.+....+||+|+|++|||||||+++|++..+.....+ +...+.....+.+.+ ..+.+|||||.. .
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHH
Confidence 4556789999999999999999999998877655444 233333333444444 468999999953 3
Q ss_pred ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEE
Q psy9621 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIML 148 (253)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 148 (253)
+......+.+++|++|+|+|+++... ....|+..+..... ...|+++|+||+|+...+..+..
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~------------- 166 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDY------------- 166 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------------
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHH-------------
Confidence 33444455678899999999876443 12233333333221 34699999999998632111000
Q ss_pred EEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCC-----CCHHHHHHHHHHHHHh
Q psy9621 149 VYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKAN-----INIEKAFIELATAIYD 223 (253)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-----~gi~~l~~~l~~~~~~ 223 (253)
-. ...+..+.+.+..+..++..+...+ .++.+||..+..++.+
T Consensus 167 ---------------------------i~-----~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 167 ---------------------------LR-----EAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HH-----hchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 00 1124577888888888887776643 6899999999888765
Q ss_pred c
Q psy9621 224 K 224 (253)
Q Consensus 224 ~ 224 (253)
.
T Consensus 215 ~ 215 (239)
T 3lxx_A 215 N 215 (239)
T ss_dssp C
T ss_pred c
Confidence 4
No 136
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.86 E-value=6.3e-21 Score=154.19 Aligned_cols=173 Identities=13% Similarity=0.174 Sum_probs=107.0
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCC-CCCcccCc-cceeeEEEEEeeCCeEEEEEEEeCCCcccccccch------
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDA-FNTTFIST-IGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITT------ 76 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------ 76 (253)
+....+||+|+|++|||||||+++|++.. +...+.++ ...+.....+...+ ..+.+|||||+..+.....
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 44567999999999999999999999876 44333333 33333333444443 4699999999876543322
Q ss_pred -----hhhcCccEEEEEEeCCChhhH-HHHHHHHHHHHHhcccccceeEEee-eeccccccccccccccccccceeeEEE
Q psy9621 77 -----SYYRGAMGIMLVYDITNEKSF-DNILKWLRNIDEHANEDVEKMILGK-TKDTAGQERFHTITTSYYRGAMGIMLV 149 (253)
Q Consensus 77 -----~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (253)
.+++.+|++|+|+|+++.... ..+..++..+.... ...|.++++| |+|+.+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~~------------------- 155 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGGS------------------- 155 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTCC-------------------
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCcc-------------------
Confidence 267899999999999863222 22223444332221 1345555555 99986210
Q ss_pred EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCc---e--EEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVR---F--METSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
+..+... ........+.+..+.. + +++||++|.|++++|..|...+..+
T Consensus 156 -----------~~~~i~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 156 -----------LMDYMHD---------------SDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp -----------HHHHHHH---------------CCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------HHHHHHh---------------cchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 0000000 1112334455555422 2 7899999999999999999988765
Q ss_pred c
Q psy9621 225 T 225 (253)
Q Consensus 225 ~ 225 (253)
.
T Consensus 210 ~ 210 (260)
T 2xtp_A 210 N 210 (260)
T ss_dssp T
T ss_pred C
Confidence 4
No 137
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=3.8e-21 Score=166.31 Aligned_cols=121 Identities=13% Similarity=0.070 Sum_probs=81.3
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCC--CC-----------------------------CcccCccceeeEEEEEee
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDA--FN-----------------------------TTFISTIGIDFKIKTVDL 53 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~ 53 (253)
+....+||+++|++++|||||+++|+... +. ....+.+.++.. ...+
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~--~~~~ 90 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVG--RAYF 90 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEe--EEEE
Confidence 44567999999999999999999995431 11 111122233333 3333
Q ss_pred CCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhh---HHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 54 KGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS---FDNILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 54 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
......+.+|||||+++|......++..+|++|+|+|+++... |+...++.+.+......++| +++++||+|+.
T Consensus 91 ~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 91 ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 3344679999999999998888888999999999999988532 21111222222222224677 99999999985
No 138
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=2.4e-21 Score=172.37 Aligned_cols=161 Identities=19% Similarity=0.237 Sum_probs=111.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCC--CCC-----cc------cCccceeeEEEEEee-----CCeEEEEEEEeCCCc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDA--FNT-----TF------ISTIGIDFKIKTVDL-----KGKKIKLQIWDTAGQ 68 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~ 68 (253)
+...||+++|+.++|||||+++|+... ... .+ .+..|++.......+ ++..+.+++|||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 457899999999999999999998521 110 00 012233333222222 445688999999999
Q ss_pred ccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEE
Q psy9621 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIML 148 (253)
Q Consensus 69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 148 (253)
..|...+..+++.+|++|+|+|+++..+.+....|..... .++|+++++||+|+..+
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a------------------- 138 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAA------------------- 138 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTC-------------------
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCcccc-------------------
Confidence 9999999999999999999999999877777777765542 47899999999998621
Q ss_pred EEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 149 VYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
. ......++.+.+++ +++++||++|.|++++++.|.+.+...
T Consensus 139 ---------------------------~-------~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 139 ---------------------------D-------PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp ---------------------------C-------HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred ---------------------------c-------HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 1 11123445555554 489999999999999999999887653
No 139
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=9.6e-21 Score=151.95 Aligned_cols=174 Identities=14% Similarity=0.151 Sum_probs=106.5
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc--------ccccccchh
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ--------ERFHTITTS 77 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~ 77 (253)
....+||+|+|.+|||||||+|++++........++.+.+..............+.+|||||. +++......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 456899999999999999999999987766543333233322222222223456999999996 333332323
Q ss_pred hh----cCccEEEEEEeCCChhhH-HHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621 78 YY----RGAMGIMLVYDITNEKSF-DNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI 152 (253)
Q Consensus 78 ~~----~~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (253)
++ +++|++|+|+|+++.... ..+..++..+......+.|+++++||+|+.+..
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~---------------------- 155 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS---------------------- 155 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC----------------------
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC----------------------
Confidence 33 899999999999853211 122233333332222478999999999986210
Q ss_pred cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccC-----CCCHHHHHHHHHHHHHhc
Q psy9621 153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKA-----NINIEKAFIELATAIYDK 224 (253)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-----~~gi~~l~~~l~~~~~~~ 224 (253)
+++. .........+.+.+..+..++..+... +.|+++|++.|.+++.++
T Consensus 156 -----~~~~------------------l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 156 -----LHDY------------------VSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp -----HHHH------------------HHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----HHHH------------------HhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 0000 000112456777888887777666554 589999999999988764
No 140
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.85 E-value=2.9e-21 Score=168.07 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=109.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc-cccc--------cchhh
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE-RFHT--------ITTSY 78 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~~--------~~~~~ 78 (253)
.++|+++|.+|||||||+|+|.+.... ....+....+.....+.+++ ..+.+|||||.. ++.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999986532 22233333344445555654 458999999987 6542 12457
Q ss_pred hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
++.+|++|+|+|++++.+++... +++.+ .+.|+++|+||+|+.
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~------------------------------- 363 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVV------------------------------- 363 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSC-------------------------------
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccc-------------------------------
Confidence 88999999999999988776533 22322 478999999999986
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
.. ...++..++. ..+.+++++||++|.|++++++.|.+.+..
T Consensus 364 ---------------~~-------~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 364 ---------------EK-------INEEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp ---------------CC-------CCHHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred ---------------cc-------cCHHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 11 1111222222 134689999999999999999999997653
No 141
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.85 E-value=8e-21 Score=168.69 Aligned_cols=163 Identities=18% Similarity=0.253 Sum_probs=114.1
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcC--CCCC-----ccc------CccceeeEE--EEEee---CCeEEEEEEEeCC
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDD--AFNT-----TFI------STIGIDFKI--KTVDL---KGKKIKLQIWDTA 66 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~-----~~~------~~~~~~~~~--~~~~~---~~~~~~~~l~Dt~ 66 (253)
+.+...||+++|+.++|||||+++|+.. .+.. ... ...|++... ..+.+ ++..+.+++||||
T Consensus 2 ~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTP 81 (600)
T 2ywe_A 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTP 81 (600)
T ss_dssp CGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCC
T ss_pred CccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECC
Confidence 3467889999999999999999999752 1110 000 011222211 11212 3456889999999
Q ss_pred CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceee
Q psy9621 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGI 146 (253)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (253)
|+.+|...+..+++.+|++|+|+|+++..+.+....|..... .++|+++++||+|+..+
T Consensus 82 Gh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a----------------- 140 (600)
T 2ywe_A 82 GHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSA----------------- 140 (600)
T ss_dssp CSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTC-----------------
T ss_pred CcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCcccc-----------------
Confidence 999999888889999999999999999888888777765542 47899999999998621
Q ss_pred EEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 147 MLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
. ......++.+.+++ +++++||++|.|++++|+.|.+.+..
T Consensus 141 -----------------------------~-------~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 141 -----------------------------D-------VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp -----------------------------C-------HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred -----------------------------C-------HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 0 01122344444454 48999999999999999999988765
Q ss_pred c
Q psy9621 224 K 224 (253)
Q Consensus 224 ~ 224 (253)
.
T Consensus 185 p 185 (600)
T 2ywe_A 185 P 185 (600)
T ss_dssp C
T ss_pred c
Confidence 3
No 142
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.85 E-value=1.1e-22 Score=178.47 Aligned_cols=162 Identities=15% Similarity=0.088 Sum_probs=113.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
..++|+++|++|+|||||+++|.+..+.....+++..++....+... ....+.+|||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 35689999999999999999998766655544544444333333332 22368999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621 88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167 (253)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (253)
|+|+++....+....| ......++|+++++||+|+...+..
T Consensus 82 VVDa~dg~~~qt~e~l----~~~~~~~vPiIVViNKiDl~~~~~~----------------------------------- 122 (537)
T 3izy_P 82 VVAADDGVMKQTVESI----QHAKDAHVPIVLAINKCDKAEADPE----------------------------------- 122 (537)
T ss_dssp ECBSSSCCCHHHHHHH----HHHHTTTCCEEECCBSGGGTTTSCC-----------------------------------
T ss_pred EEECCCCccHHHHHHH----HHHHHcCCcEEEEEecccccccchH-----------------------------------
Confidence 9999986554443332 2223357899999999998632110
Q ss_pred hhhhcCCCchhhhhhccchhHHH---HHHHh--CCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 168 IDEHANEDPQVVNSWVCKHRGEA---IAREY--GVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
........ ++..+ .++++++||++|.|++++|+.|...+...
T Consensus 123 ---------------~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~ 169 (537)
T 3izy_P 123 ---------------KVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEML 169 (537)
T ss_dssp ---------------SSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTC
T ss_pred ---------------HHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcc
Confidence 00000000 01122 25899999999999999999999887643
No 143
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=2.4e-20 Score=160.07 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=102.8
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCC---CCCcccC--ccceeeEEEEEee-------------C--C----eEEEEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA---FNTTFIS--TIGIDFKIKTVDL-------------K--G----KKIKLQ 61 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 61 (253)
....+||+++|+.++|||||+++|.+.. +.....+ |+...+....+.. + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3567999999999999999999998432 3333333 5544554433321 1 1 136799
Q ss_pred EEeCCCcccccccchhhhcCccEEEEEEeCCCh----hhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccc
Q psy9621 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNE----KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITT 137 (253)
Q Consensus 62 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 137 (253)
+|||||++.|.......+..+|++|+|+|+++. .+.+.+..| ... ...|+++++||+|+...+..
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l--~~~~iivv~NK~Dl~~~~~~----- 153 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL--GIDKIIIVQNKIDLVDEKQA----- 153 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT--TCCCEEEEEECTTSSCTTTT-----
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc--CCCeEEEEEEccCCCCHHHH-----
Confidence 999999999877776777889999999999954 444443322 221 23589999999999722100
Q ss_pred cccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH---hCCceEEeeccCCCCHHHHH
Q psy9621 138 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE---YGVRFMETSAKANINIEKAF 214 (253)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~ 214 (253)
. ...++..++.+. .+++++++||++|.|+++|+
T Consensus 154 ---------------------------------------~-----~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~ 189 (408)
T 1s0u_A 154 ---------------------------------------E-----ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLL 189 (408)
T ss_dssp ---------------------------------------T-----THHHHHHHHHTTSTTTTCCEEEC------CHHHHH
T ss_pred ---------------------------------------H-----HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHH
Confidence 0 111233344443 25799999999999999999
Q ss_pred HHHHHHHHh
Q psy9621 215 IELATAIYD 223 (253)
Q Consensus 215 ~~l~~~~~~ 223 (253)
+.|.+.+..
T Consensus 190 ~~l~~~i~~ 198 (408)
T 1s0u_A 190 KAIQDFIPT 198 (408)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhCCC
Confidence 999886653
No 144
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=9.8e-22 Score=151.63 Aligned_cols=116 Identities=15% Similarity=0.274 Sum_probs=90.0
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCC---cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcC-
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT---TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRG- 81 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~- 81 (253)
....++|+|+|++|||||||+++|.+..+.. .+.++.+.++ ....+.+|||||++.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 4567899999999999999999999876644 1222222111 34568999999999998888777776
Q ss_pred ---ccEEEEEEeCC-ChhhHHHHHHHHHHHHHhcc----cccceeEEeeeecccccc
Q psy9621 82 ---AMGIMLVYDIT-NEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 82 ---~d~~ilv~d~~-~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~ 130 (253)
+|++|+|||++ ++.++..+..|+..+..... .++|+++|+||+|+..++
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 89999999999888876532 589999999999997543
No 145
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.84 E-value=1.3e-20 Score=157.96 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=99.8
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCC----------hhhHHHHHHHHHHHHHhc-ccccceeEEeeeec
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITN----------EKSFDNILKWLRNIDEHA-NEDVEKMILGKTKD 125 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D 125 (253)
.+.+.+|||+|++.++.+|..++++++++|||||+++ ..++.....|+..+.... ..++|+++++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 5789999999999999999999999999999999999 567999889999887643 26799999999999
Q ss_pred cccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH-----------H
Q psy9621 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-----------E 194 (253)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 194 (253)
+..++... ..+..++++... .+..+++.++++ .
T Consensus 272 L~~~ki~~--------------------------------~~l~~~fp~~~g----~~~~~e~~~~~~~~f~~l~~~~~~ 315 (353)
T 1cip_A 272 LFEEKIKK--------------------------------SPLTICYPEYAG----SNTYEEAAAYIQCQFEDLNKRKDT 315 (353)
T ss_dssp HHHHHHTT--------------------------------SCGGGTCTTCCS----CSCHHHHHHHHHHHHHTTCSCTTT
T ss_pred chhhhccc--------------------------------cchhhcccccCC----CCCHHHHHHHHHHHHHHhhcccCC
Confidence 86332110 001111111000 023344555554 3
Q ss_pred hCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621 195 YGVRFMETSAKANINIEKAFIELATAIYDKTSG 227 (253)
Q Consensus 195 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 227 (253)
.++.+++|||+++.||+++|+++.+.+....+.
T Consensus 316 ~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l~ 348 (353)
T 1cip_A 316 KEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 348 (353)
T ss_dssp CCEEEEECCTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred CceEEEEEECcCchhHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999876653
No 146
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.84 E-value=1.7e-20 Score=163.85 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=107.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCC-------CCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDA-------FNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR 80 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (253)
..++|+++|+.++|||||+++|.+.. ......+.+.++.....+.+++ ..+.+|||||++.|......++.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence 46899999999999999999999765 1222222222222222233333 67999999999999888888899
Q ss_pred CccEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621 81 GAMGIMLVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 157 (253)
Q Consensus 81 ~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (253)
.+|++|+|+|+++ +.+.+.+. .+.. .++|+++++||+|+..+..
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~-------------------------- 142 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEE-------------------------- 142 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHH--------------------------
T ss_pred hCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchh--------------------------
Confidence 9999999999987 44443332 2222 4689999999999862100
Q ss_pred hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh----CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621 158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY----GVRFMETSAKANINIEKAFIELATAIY 222 (253)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 222 (253)
++ ...++..++.+.. +++++++||++|.|+++|++.|.+.+.
T Consensus 143 ~~-----------------------~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 143 IK-----------------------RTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HH-----------------------HHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HH-----------------------HHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 00 1122344444444 579999999999999999999999875
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.84 E-value=4e-21 Score=166.48 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=101.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc--------hhh
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT--------TSY 78 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 78 (253)
..+||+++|++|||||||+|+|.+.... ....++...++....+.+++ ..+.+|||||..++.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4579999999999999999999875432 22223333334333445555 458999999986654333 236
Q ss_pred hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
++.+|++++|+|++++.+... ..|+..+ ...|+++|+||+|+......
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~-------------------------- 348 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLI-------------------------- 348 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGS--------------------------
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhh--------------------------
Confidence 789999999999998776554 3454444 34799999999998732111
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
. ...++. .+.+++++||++|.|++++++.|.+.+....
T Consensus 349 -------------------------~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 349 -------------------------T--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp -------------------------T--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred -------------------------H--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 0 011111 3568999999999999999999999887654
No 148
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.84 E-value=3.6e-20 Score=159.18 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=110.7
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcC---CCCCcccC--ccceeeEEEEEee-------------C--C----eEEEE
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDD---AFNTTFIS--TIGIDFKIKTVDL-------------K--G----KKIKL 60 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 60 (253)
.....+||+++|+.++|||||+++|.+. .+.....+ |+...+....+.. + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 4567899999999999999999999843 23333334 5544454333321 0 1 13679
Q ss_pred EEEeCCCcccccccchhhhcCccEEEEEEeCCCh----hhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNE----KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT 136 (253)
Q Consensus 61 ~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 136 (253)
.+|||||++.|.......+..+|++|+|+|+++. .+.+.+..+ ... ...|+++++||+|+.....
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~--~~~~iivviNK~Dl~~~~~----- 154 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII--GQKNIIIAQNKIELVDKEK----- 154 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH--TCCCEEEEEECGGGSCHHH-----
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc--CCCcEEEEEECccCCCHHH-----
Confidence 9999999999877777777889999999999954 344433322 222 2358999999999862110
Q ss_pred ccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH---hCCceEEeeccCCCCHHHH
Q psy9621 137 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE---YGVRFMETSAKANINIEKA 213 (253)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l 213 (253)
.. ...++..++.+. .+++++++||++|.|+++|
T Consensus 155 ------------------------~~--------------------~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L 190 (410)
T 1kk1_A 155 ------------------------AL--------------------ENYRQIKEFIEGTVAENAPIIPISALHGANIDVL 190 (410)
T ss_dssp ------------------------HH--------------------HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHH
T ss_pred ------------------------HH--------------------HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHH
Confidence 00 011122333332 3579999999999999999
Q ss_pred HHHHHHHHHh
Q psy9621 214 FIELATAIYD 223 (253)
Q Consensus 214 ~~~l~~~~~~ 223 (253)
++.|.+.+..
T Consensus 191 ~~~l~~~~~~ 200 (410)
T 1kk1_A 191 VKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHhCCC
Confidence 9999886653
No 149
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.84 E-value=9e-21 Score=156.31 Aligned_cols=158 Identities=11% Similarity=0.069 Sum_probs=106.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-ccCccceeeEEEEEeeCCeEEEEEEEeCCCcc---------cccccchh
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE---------RFHTITTS 77 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~ 77 (253)
...+|+++|++|||||||+++|++..+... ..+ +.+.....-.+.....++.+|||||.. .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~--~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKA--QTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCS--SCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCC--CcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 345899999999999999999998765322 112 111111111122234679999999987 23444566
Q ss_pred hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621 78 YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 157 (253)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (253)
+++.+|++++|+|+++ +.....|+..... ..+.|+++++||+|+..
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~----------------------------- 130 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQ----------------------------- 130 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCC-----------------------------
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCc-----------------------------
Confidence 7889999999999976 2233334333222 25799999999999861
Q ss_pred hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
... ...+...++++.++. .++++||++|.|++++++.+...+..
T Consensus 131 -----------------~~~-----~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 131 -----------------EKA-----DLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp -----------------CHH-----HHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred -----------------cHH-----HHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 111 222334555666665 78999999999999999999877654
No 150
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.83 E-value=6.4e-21 Score=155.35 Aligned_cols=165 Identities=15% Similarity=0.193 Sum_probs=94.9
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCC-Ccc-------cCccceeeEEEEEeeCCeEEEEEEEeCCCcccc------
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTF-------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF------ 71 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------ 71 (253)
....+||+|+|.+|+|||||+|+++..... ..+ .++++.+.....+..++..+.+.+|||||....
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 456899999999999999999998765443 333 566666666666665666678999999997432
Q ss_pred -cccc-------hhhhc-------------CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621 72 -HTIT-------TSYYR-------------GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 72 -~~~~-------~~~~~-------------~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 130 (253)
..+. ..++. .+|+++++++.+..........++..+.. ++|+++|+||+|+...
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~- 159 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP- 159 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCH-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCH-
Confidence 2222 22222 27789998876653222222334444432 7999999999998621
Q ss_pred ccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCH
Q psy9621 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINI 210 (253)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 210 (253)
.+. ........+.....+++++.+||.++.|+
T Consensus 160 ---------------------------------------------~e~---~~~~~~i~~~l~~~~i~v~~~sa~~~~~~ 191 (274)
T 3t5d_A 160 ---------------------------------------------EEC---QQFKKQIMKEIQEHKIKIYEFPETDDEEE 191 (274)
T ss_dssp ---------------------------------------------HHH---HHHHHHHHHHHHHTTCCCCCC--------
T ss_pred ---------------------------------------------HHH---HHHHHHHHHHHHHcCCeEEcCCCCCChhH
Confidence 110 01122344555667899999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy9621 211 EKAFIELATAIYD 223 (253)
Q Consensus 211 ~~l~~~l~~~~~~ 223 (253)
++++..|...+.-
T Consensus 192 ~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 192 NKLVKKIKDRLPL 204 (274)
T ss_dssp ---CHHHHHTCSE
T ss_pred HHHHHHHhcCCCc
Confidence 9999998876543
No 151
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.83 E-value=1.1e-20 Score=163.45 Aligned_cols=161 Identities=17% Similarity=0.120 Sum_probs=104.3
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCC--CCc----------ccCcc-------------------ceeeEEEEEe
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAF--NTT----------FISTI-------------------GIDFKIKTVD 52 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~--~~~----------~~~~~-------------------~~~~~~~~~~ 52 (253)
......+||+++|++++|||||+++|++... ... ..++. |++.......
T Consensus 19 ~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~ 98 (434)
T 1zun_B 19 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY 98 (434)
T ss_dssp TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred cccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeE
Confidence 3445679999999999999999999975431 100 00111 1111111122
Q ss_pred eCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccc-ceeEEeeeeccccccc
Q psy9621 53 LKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDV-EKMILGKTKDTAGQER 131 (253)
Q Consensus 53 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~-p~iiv~nK~D~~~~~~ 131 (253)
+......+.+|||||++.|......++..+|++|+|+|+++....+ ..+++..+.. .++ |+++++||+|+...
T Consensus 99 ~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~---~~~~~iIvviNK~Dl~~~-- 172 (434)
T 1zun_B 99 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASL---LGIKHIVVAINKMDLNGF-- 172 (434)
T ss_dssp EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEEECTTTTTS--
T ss_pred eecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEEcCcCCcc--
Confidence 2334467999999999999888888899999999999999864322 2334433332 244 69999999998621
Q ss_pred cccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-----CceEEeeccC
Q psy9621 132 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-----VRFMETSAKA 206 (253)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~ 206 (253)
..... . ....+..++++.++ ++++++||++
T Consensus 173 -------------------------------------------~~~~~-~-~i~~~~~~~~~~~g~~~~~~~~i~vSA~~ 207 (434)
T 1zun_B 173 -------------------------------------------DERVF-E-SIKADYLKFAEGIAFKPTTMAFVPMSALK 207 (434)
T ss_dssp -------------------------------------------CHHHH-H-HHHHHHHHHHHTTTCCCSEEEEEECCTTT
T ss_pred -------------------------------------------cHHHH-H-HHHHHHHHHHHHhCCCccCceEEEEeccC
Confidence 00000 0 12234556666666 6899999999
Q ss_pred CCCHHHHHH
Q psy9621 207 NINIEKAFI 215 (253)
Q Consensus 207 ~~gi~~l~~ 215 (253)
|.|+++++.
T Consensus 208 g~gi~~~~~ 216 (434)
T 1zun_B 208 GDNVVNKSE 216 (434)
T ss_dssp CTTTSSCCT
T ss_pred CCCcccccc
Confidence 999998543
No 152
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.83 E-value=2.9e-20 Score=153.68 Aligned_cols=138 Identities=13% Similarity=0.115 Sum_probs=99.4
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCC----------ChhhHHHHHHHHHHHHHhc-ccccceeEEeeee
Q psy9621 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT----------NEKSFDNILKWLRNIDEHA-NEDVEKMILGKTK 124 (253)
Q Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~ 124 (253)
+.+.+++|||+|++.++.++..++++++++|+|||++ +..++.....|+..+.... ..++|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 3578999999999999999999999999999999665 6777888888888886643 2679999999999
Q ss_pred ccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHH----------HHH
Q psy9621 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAI----------ARE 194 (253)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 194 (253)
|+..++....- +..++++... .....+++.++ +..
T Consensus 245 DL~~~ki~~~~--------------------------------l~~~fp~y~g---~~~~~e~a~~fi~~~F~~~~~~~~ 289 (327)
T 3ohm_A 245 DLLEEKIMYSH--------------------------------LVDYFPEYDG---PQRDAQAAREFILKMFVDLNPDSD 289 (327)
T ss_dssp HHHHHHTTTSC--------------------------------GGGTCTTCCS---CSSCHHHHHHHHHHHHHSSCTTTT
T ss_pred hhhhhhhccch--------------------------------HhhhchhccC---CCCCHHHHHHHHHHHHHhhccccc
Confidence 99754321100 0011101000 00223334444 234
Q ss_pred hCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621 195 YGVRFMETSAKANINIEKAFIELATAIYDKTSGR 228 (253)
Q Consensus 195 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 228 (253)
.++.+++|||+++.||+.+|..+...+.++....
T Consensus 290 ~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~~ 323 (327)
T 3ohm_A 290 KIIYSHFTCATDTENIRFVFAAVKDTILQLNLKE 323 (327)
T ss_dssp SCEEEEECCTTCHHHHHHHHHHHHHHHHHTTCC-
T ss_pred CCcEEEEEEeecCHHHHHHHHHHHHHHHHHhHHh
Confidence 5678899999999999999999999999876543
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.83 E-value=1.1e-20 Score=165.37 Aligned_cols=120 Identities=16% Similarity=0.115 Sum_probs=78.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCC--CCCc---------------------------ccCccceeeEEEEEeeCCeE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDA--FNTT---------------------------FISTIGIDFKIKTVDLKGKK 57 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 57 (253)
...+||+++|++|+|||||+++|++.. +... .....|++.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 357999999999999999999997541 1100 00011333322233344455
Q ss_pred EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHH-----HHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI-----LKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-----~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
..+.+|||||+++|......++..+|++|+|+|+++..++..+ ..+...+.... ...|+++++||+|+.
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNV 184 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGG
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcc
Confidence 6799999999999999889999999999999999987543321 11111122211 234699999999987
No 154
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.83 E-value=8.5e-21 Score=167.00 Aligned_cols=123 Identities=14% Similarity=0.103 Sum_probs=86.8
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCC-----------------CCccc---CccceeeEEEEEeeCCeEEEEEEEe
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAF-----------------NTTFI---STIGIDFKIKTVDLKGKKIKLQIWD 64 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~-----------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D 64 (253)
+.+...+|+|+|++|+|||||+++|+...- ...+. ...|++.......+......+.+||
T Consensus 9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liD 88 (528)
T 3tr5_A 9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLD 88 (528)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEEC
T ss_pred hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEE
Confidence 345678999999999999999999962110 00000 0012222222222333457799999
Q ss_pred CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc
Q psy9621 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER 131 (253)
Q Consensus 65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 131 (253)
|||+..|......+++.+|++|+|+|+++..+......|. .+. ..++|+++++||+|+.++..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~---~~~iPiivviNK~Dl~~~~~ 151 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR---LRHTPIMTFINKMDRDTRPS 151 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH---TTTCCEEEEEECTTSCCSCH
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEeCCCCccccH
Confidence 9999999999999999999999999999877666655553 222 24799999999999976543
No 155
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=6.4e-20 Score=158.91 Aligned_cols=166 Identities=17% Similarity=0.100 Sum_probs=104.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc-----------
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI----------- 74 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 74 (253)
+..+||+++|++|||||||+++|.+.... ....+....+.....+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 35689999999999999999999986542 111222222333344555654 5889999997433221
Q ss_pred c-hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEecc
Q psy9621 75 T-TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDIT 153 (253)
Q Consensus 75 ~-~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (253)
. ..+++.+|++++++|+++..+.... .+...+.. .+.|+++++||+|+..
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~------------------------- 306 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVV------------------------- 306 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGST-------------------------
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCC-------------------------
Confidence 1 2467789999999999987665542 22222222 4799999999999862
Q ss_pred CccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621 154 NEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224 (253)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 224 (253)
.+............+.++...+.+++++||++|.|++++|+.+.+.+...
T Consensus 307 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 307 ---------------------HREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp ---------------------TGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ---------------------chhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 11100000111111222222357999999999999999999999877654
No 156
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.83 E-value=1e-19 Score=153.46 Aligned_cols=164 Identities=15% Similarity=0.086 Sum_probs=108.0
Q ss_pred eE-EEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc---------ccccchhhh
Q psy9621 10 FK-LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER---------FHTITTSYY 79 (253)
Q Consensus 10 ~k-i~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 79 (253)
++ |+++|++|||||||+++|.+..+.....+....+.....+.+++ ..+.+|||+|... |... ...+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHH
Confidence 44 99999999999999999998765332222222234445566666 4589999999622 2222 2246
Q ss_pred cCccEEEEEEeCCChh--hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621 80 RGAMGIMLVYDITNEK--SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 157 (253)
Q Consensus 80 ~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (253)
..+|++++|+|++++. ....+..|...+......+.|+++|+||+|+..
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~----------------------------- 306 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN----------------------------- 306 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC-----------------------------
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC-----------------------------
Confidence 8899999999999886 555555665555554446799999999999861
Q ss_pred hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
.... ........++..+ +.+++++||+++.|++++++.|.+.+.....
T Consensus 307 -----------------~~~~----~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 307 -----------------GDLY----KKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp -----------------SCHH----HHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred -----------------chHH----HHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 1100 0011222334444 2468999999999999999999998776543
No 157
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=3e-21 Score=162.91 Aligned_cols=165 Identities=19% Similarity=0.310 Sum_probs=92.9
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCC-CCCcc--------cCccceeeEEEEEeeCCeEEEEEEEeCCCc-------c
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA-FNTTF--------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ-------E 69 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~ 69 (253)
....++|+|+|++|+|||||+++|.... +...+ .++++.++....+...+....+.+|||||. +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 3557899999999999999999976543 32222 145544444334444555678999999999 6
Q ss_pred cccccch-------hhhcCccEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccc
Q psy9621 70 RFHTITT-------SYYRGAMGI-----------MLVYDITN-EKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129 (253)
Q Consensus 70 ~~~~~~~-------~~~~~~d~~-----------ilv~d~~~-~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 129 (253)
.|..+.. .+++.++++ +++|++++ ..++..+. .|+..+ ..++|+++|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~- 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLT- 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCC-
Confidence 6666665 566554433 35566554 44555544 343333 36799999999999862
Q ss_pred cccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhcc--chhHHHHHHHhCCceEEeeccCC
Q psy9621 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC--KHRGEAIAREYGVRFMETSAKAN 207 (253)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~ 207 (253)
.++ +. ...+.++++.++++++++||+++
T Consensus 189 ---------------------------------------------~~e-----v~~~k~~i~~~~~~~~i~~~~~Sa~~~ 218 (361)
T 2qag_A 189 ---------------------------------------------LKE-----RERLKKRILDEIEEHNIKIYHLPDAES 218 (361)
T ss_dssp ---------------------------------------------HHH-----HHHHHHHHHHHTTCC-CCSCCCC----
T ss_pred ---------------------------------------------HHH-----HHHHHHHHHHHHHHCCCCEEeCCCcCC
Confidence 111 21 14556667777899999999999
Q ss_pred CCHHHHHHHHHHHHHhccC
Q psy9621 208 INIEKAFIELATAIYDKTS 226 (253)
Q Consensus 208 ~gi~~l~~~l~~~~~~~~~ 226 (253)
.| ++.|..+.+.+.+..+
T Consensus 219 ~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 219 DE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp ------CHHHHHHHHHTCS
T ss_pred Cc-chhHHHHHHHHHhcCC
Confidence 99 9999999988876553
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.83 E-value=4e-21 Score=166.19 Aligned_cols=163 Identities=18% Similarity=0.204 Sum_probs=105.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcC--CCCCccc---------------------------CccceeeEEEEEeeCCeE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDD--AFNTTFI---------------------------STIGIDFKIKTVDLKGKK 57 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 57 (253)
...+||+++|++|+|||||+++|+.. .+..... ...|++.......+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35799999999999999999999863 2321100 001112211122233345
Q ss_pred EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhc----cccc-ceeEEeeeecccccccc
Q psy9621 58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA----NEDV-EKMILGKTKDTAGQERF 132 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~~-p~iiv~nK~D~~~~~~~ 132 (253)
..+.+|||||+++|......+++.+|++|+|+|+++ .+|+....|..+...+. ..++ |+++++||+|+....
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~-- 160 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP-- 160 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST--
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc--
Confidence 679999999999998888889999999999999998 67776554333332222 1244 689999999996210
Q ss_pred ccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-----CceEEeeccCC
Q psy9621 133 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-----VRFMETSAKAN 207 (253)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~ 207 (253)
..+... ....++.+++++.++ ++++++||++|
T Consensus 161 ------------------------------------------~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g 197 (435)
T 1jny_A 161 ------------------------------------------YDEKRY-KEIVDQVSKFMRSYGFNTNKVRFVPVVAPSG 197 (435)
T ss_dssp ------------------------------------------TCHHHH-HHHHHHHHHHHHHTTCCCTTCEEEECBTTTT
T ss_pred ------------------------------------------ccHHHH-HHHHHHHHHHHHHcCCCcCCceEEEeecccC
Confidence 000000 022344566666665 68999999999
Q ss_pred CCHHHHHH
Q psy9621 208 INIEKAFI 215 (253)
Q Consensus 208 ~gi~~l~~ 215 (253)
.|+.++++
T Consensus 198 ~~v~e~~~ 205 (435)
T 1jny_A 198 DNITHKSE 205 (435)
T ss_dssp BTTTBCCS
T ss_pred cccccccc
Confidence 99986654
No 159
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=4.6e-21 Score=166.85 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=111.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCC--------cccccccchhhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG--------QERFHTITTSYYR 80 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~~~~ 80 (253)
..+|+++|.+|||||||+++|.+..+... .++.|++..............+.+||||| ++++......+++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 56999999999999999999998765422 34445555555555555566899999999 5666777788899
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN 160 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (253)
.+|++|+|+|..+..+. ...|+..+... .+.|+++|+||+|+...
T Consensus 102 ~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~------------------------------- 146 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEM------------------------------- 146 (456)
T ss_dssp HCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC------------------------------------
T ss_pred hCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhh-------------------------------
Confidence 99999999998764332 23444443332 57999999999998621
Q ss_pred HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEee
Q psy9621 161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTI 239 (253)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (253)
.. ...++. .++ -..+++||++|.|++++++.+.+.+..... ........++.+
T Consensus 147 ---------------~~---------~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~-~~~~~~~~ki~i 200 (456)
T 4dcu_A 147 ---------------RA---------NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPE-TKYNEEVIQFCL 200 (456)
T ss_dssp ----------------------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCS-SCCCTTCEEEEE
T ss_pred ---------------hh---------hHHHHH-HcCCCceEEeecccccchHHHHHHHHhhcccccc-cccccccceeEE
Confidence 10 000011 123 256899999999999999999887654321 122223345555
Q ss_pred cCCCCCC
Q psy9621 240 DKKPDRG 246 (253)
Q Consensus 240 ~~~~~~~ 246 (253)
-..++.+
T Consensus 201 vG~~~vG 207 (456)
T 4dcu_A 201 IGRPNVG 207 (456)
T ss_dssp ECSTTSS
T ss_pred ecCCCCC
Confidence 5555544
No 160
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.82 E-value=3.3e-20 Score=155.46 Aligned_cols=141 Identities=10% Similarity=0.090 Sum_probs=96.3
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCC----------ChhhHHHHHHHHHHHHHhc-ccccceeEEeeee
Q psy9621 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT----------NEKSFDNILKWLRNIDEHA-NEDVEKMILGKTK 124 (253)
Q Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~ 124 (253)
+.+.+++|||+|++.++.++..++++++++|+|||++ +..+|+....|+..+.... ..++|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5688999999999999999999999999999999998 7889999999999887653 2679999999999
Q ss_pred ccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH----------
Q psy9621 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE---------- 194 (253)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 194 (253)
|+..++....-... . ..+++...........+++.++++.
T Consensus 261 DL~~~k~~~v~l~~----------------~--------------~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~ 310 (354)
T 2xtz_A 261 DIFEKKVLDVPLNV----------------C--------------EWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNT 310 (354)
T ss_dssp HHHHHHTTTSCGGG----------------S--------------GGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chhhhhcccccccc----------------c--------------ccccccccccCCCcCHHHHHHHHHHHHHHhhhccc
Confidence 98633211000000 0 0000000000000122344444322
Q ss_pred ------hCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 195 ------YGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 195 ------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
..+.+++|||+++.||+++|+.+.+.+.++.+
T Consensus 311 ~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~~l 348 (354)
T 2xtz_A 311 APDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNL 348 (354)
T ss_dssp CTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcceEEEEEEeecchhHHHHHHHHHHHHHHHHH
Confidence 12456899999999999999999998877654
No 161
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.82 E-value=1e-19 Score=161.96 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=82.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCc----ccCccceeeEEEEE------------eeCCeEEEEEEEeCCCcccc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTT----FISTIGIDFKIKTV------------DLKGKKIKLQIWDTAGQERF 71 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~l~Dt~G~~~~ 71 (253)
..++|+++|++++|||||+++|++..+... ..++++..+..... .+......+.+|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 357999999999999999999986544322 22344433321110 00111235999999999999
Q ss_pred cccchhhhcCccEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeecccc
Q psy9621 72 HTITTSYYRGAMGIMLVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128 (253)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 128 (253)
..++..+++.+|++|+|||+++ +.+++.+..+ . ..++|+++++||+|+..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~---~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----R---MYRTPFVVAANKIDRIH 136 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----H---HTTCCEEEEEECGGGST
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----H---HcCCeEEEEeccccccc
Confidence 9999999999999999999999 6666554422 1 25799999999999964
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.81 E-value=4.8e-20 Score=158.11 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=84.3
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcC--------CCCCc--c-----cCccceeeEEEEEeeCCeEEEEEEEeCCCccc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDD--------AFNTT--F-----ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~--------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 70 (253)
....+||+++|++++|||||+++|.+. .+... . ....|++.......+......+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 346799999999999999999999862 22111 0 01223333333344444456799999999999
Q ss_pred ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
|......++..+|++|+|+|+++.... ...+++..+.. .++| +++++||+|+.
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~---~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFMNKVDMV 141 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH---TTCCCEEEEEECGGGC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEECcccc
Confidence 988888889999999999999886543 33445544433 3688 88999999986
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.81 E-value=7.6e-20 Score=156.42 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=109.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcC-------CCCCc-------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDD-------AFNTT-------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT 73 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 73 (253)
+.+||+++|++++|||||+++|.+. .+... .....|++.......+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4689999999999999999999863 11110 001223333333334444456799999999999988
Q ss_pred cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621 74 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI 152 (253)
Q Consensus 74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (253)
....++..+|++|+|+|+++....+....| ..+.. .++| +++++||+|+..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~------------------------ 133 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQ------------------------ 133 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCS------------------------
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCC------------------------
Confidence 788889999999999999986543333333 33322 4688 689999999862
Q ss_pred cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-----CceEEeeccCCCC----------HHHHHHHH
Q psy9621 153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-----VRFMETSAKANIN----------IEKAFIEL 217 (253)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~g----------i~~l~~~l 217 (253)
.... . .....+.+++.+.++ ++++++||++|.| +++|++.|
T Consensus 134 ----------------------~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l 189 (397)
T 1d2e_A 134 ----------------------DSEM-V-ELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAV 189 (397)
T ss_dssp ----------------------CHHH-H-HHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHH
T ss_pred ----------------------CHHH-H-HHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHH
Confidence 1000 0 011234455666555 6899999999775 88898888
Q ss_pred HHHHH
Q psy9621 218 ATAIY 222 (253)
Q Consensus 218 ~~~~~ 222 (253)
...+.
T Consensus 190 ~~~~p 194 (397)
T 1d2e_A 190 DTYIP 194 (397)
T ss_dssp HHHSC
T ss_pred HHhCC
Confidence 77664
No 164
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.81 E-value=8.1e-20 Score=151.57 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=102.0
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcc-cccceeEEeeee
Q psy9621 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT----------NEKSFDNILKWLRNIDEHAN-EDVEKMILGKTK 124 (253)
Q Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~ 124 (253)
+.+.+++|||+|++.++.++..++++++++|+|||++ +..++.....|+..+..... .++|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999998 77889999999888876532 689999999999
Q ss_pred cccccccccc-ccccccccceeeEEEEeccCccchhhHHHHHHhhhhh----cCCCchhhhhhccchhHHHHHHHhCCce
Q psy9621 125 DTAGQERFHT-ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH----ANEDPQVVNSWVCKHRGEAIAREYGVRF 199 (253)
Q Consensus 125 D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (253)
|+..++.... +...+... ......++..+|+..--.. ....+.. ........-+....+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y----------~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~----~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEY----------TGGDNAVMGAQYIQQLFTGKLQTEEMNISG----ADGTANIEGAVNEKVYT 304 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTC----------CCTTCHHHHHHHHHHHHHTTSEEEESCC------------------CEEEE
T ss_pred hhhhhhcCcchHHHhhhhh----------cCCCCHHHHHHHHHHhcccccchhhhhccc----cccccccccccCcceEE
Confidence 9985543211 11111111 0112344444444321100 0000000 00000000011134788
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621 200 METSAKANINIEKAFIELATAIYDKTSG 227 (253)
Q Consensus 200 ~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 227 (253)
++|||++..||+.+|..+...+++ .+.
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~Il~-~l~ 331 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDVIMK-NMA 331 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHH-HHH
T ss_pred EEEEeeCcHHHHHHHHHHHHHHHH-HHH
Confidence 999999999999999999999887 543
No 165
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.80 E-value=1.3e-20 Score=163.69 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=78.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcC--CCCCc-----------------------------ccCccceeeEEEEEeeCC
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDD--AFNTT-----------------------------FISTIGIDFKIKTVDLKG 55 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 55 (253)
...+||+++|++++|||||+++|++. .+... ..+.+.++.... .+..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~--~~~~ 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW--KFET 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE--EEEC
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE--EEec
Confidence 35799999999999999999999853 22110 001111112112 2333
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh---hHH---HHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK---SFD---NILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
....+.+|||||++.|......++..+|++|+|+|+++.. +|+ .....+..+.. .++| +++++||+|+.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence 4567999999999999888888899999999999998753 221 12222222221 3566 89999999986
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.80 E-value=4e-21 Score=167.27 Aligned_cols=112 Identities=14% Similarity=0.150 Sum_probs=80.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML 87 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il 87 (253)
...+|+++|++++|||||+++|....+.....+.+..+.....+..++ ..+.+|||||++.|..++...+..+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 457899999999999999999987555433323222222222222333 468999999999999999999999999999
Q ss_pred EEeCCCh---hhHHHHHHHHHHHHHhcccccceeEEeeeecccc
Q psy9621 88 VYDITNE---KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128 (253)
Q Consensus 88 v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 128 (253)
|+|+++. .+.+.+. .+ ...++|+++++||+|+.+
T Consensus 81 VVda~~g~~~qT~e~l~----~~---~~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAIQ----HA---KAAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp EEETTTBSCTTTHHHHH----HH---HHTTCCEEEEEECSSSST
T ss_pred EeecccCccHHHHHHHH----HH---HhcCceEEEEEEeccccc
Confidence 9999884 3333321 11 225789999999999973
No 167
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.80 E-value=5.4e-21 Score=166.56 Aligned_cols=117 Identities=11% Similarity=0.060 Sum_probs=69.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc--CCCCCc-------------------------------ccCccceeeEEEEEee
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD--DAFNTT-------------------------------FISTIGIDFKIKTVDL 53 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~--~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 53 (253)
...+||+++|+.++|||||+++|+. +.+... .-.|+. .....+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~--~~~~~~~~ 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVE--VGRAYFET 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEEC
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEE--eeeEEEec
Confidence 4578999999999999999999974 222100 001111 11112222
Q ss_pred CCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh---hHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 54 KGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK---SFDNILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 54 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
....+.+|||||++.|.......+..+|++|+|+|+++.. +|+...+|.+.+......++| +++++||+|+.
T Consensus 119 --~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 --EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp --SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred --CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 2467999999999999888888899999999999999862 333222333333332335787 99999999985
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.6e-20 Score=165.75 Aligned_cols=121 Identities=16% Similarity=0.131 Sum_probs=79.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCccc-----------------------------CccceeeEEEEEeeCCeE
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFI-----------------------------STIGIDFKIKTVDLKGKK 57 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 57 (253)
...+||+++|++|+|||||+++|++........ ...|++.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999998653221100 001222222222233345
Q ss_pred EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh---hHHHHHHHHHHHHHhccccc-ceeEEeeeeccc
Q psy9621 58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK---SFDNILKWLRNIDEHANEDV-EKMILGKTKDTA 127 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~-p~iiv~nK~D~~ 127 (253)
..+.+|||||++.|......+++.+|++|+|+|+++.. ++.....+...+......++ |+++|+||+|+.
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 67999999999999888888999999999999998742 11111122222222222344 599999999986
No 169
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=3.7e-19 Score=161.00 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=85.8
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccC----------------ccceeeEEEEEeeCCeEEEEEEEe
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFIS----------------TIGIDFKIKTVDLKGKKIKLQIWD 64 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~D 64 (253)
|.....+...+|+++|+.|+|||||+++|+.......... ..++++......+....+.+++||
T Consensus 1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 5666667789999999999999999999984322110000 113334334444444467899999
Q ss_pred CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
|||+..|......+++.+|++++|+|+++....... .++..+.. .++|+++++||+|+.
T Consensus 81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 81 APGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEECGGGC
T ss_pred CCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecCCchh
Confidence 999999988888999999999999998876543333 33333333 479999999999997
No 170
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.79 E-value=2.4e-19 Score=151.51 Aligned_cols=148 Identities=10% Similarity=0.032 Sum_probs=103.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD 90 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 90 (253)
+|+++|++++|||||+++|+. .-.|+...+ ..+ ......+.+|||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~------~giTi~~~~--~~~--~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK------KGTSSDITM--YNN--DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE------EEEESSSEE--EEE--CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHh------CCEEEEeeE--EEE--ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 999999999999999999981 122332222 223 3334569999999999998777778899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcccccce-eEEee-eeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621 91 ITNEKSFDNILKWLRNIDEHANEDVEK-MILGK-TKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168 (253)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (253)
+. ..+....+++..+.. .++|. ++++| |+|+ .++.. +
T Consensus 93 -~~-g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~--------------------------~--------- 131 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAI--------------------------D--------- 131 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHH--------------------------H---------
T ss_pred -CC-CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHH--------------------------H---------
Confidence 53 334444555554443 35787 88899 9997 32110 0
Q ss_pred hhhcCCCchhhhhhccchhHHHHHHHh---CCceEE--eeccC---CCCHHHHHHHHHHHHHh
Q psy9621 169 DEHANEDPQVVNSWVCKHRGEAIAREY---GVRFME--TSAKA---NINIEKAFIELATAIYD 223 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~Sa~~---~~gi~~l~~~l~~~~~~ 223 (253)
...++.+++.+.. .+++++ +||++ +.|++++++.|...+..
T Consensus 132 --------------~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 132 --------------ELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp --------------HHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 0112233333333 379999 99999 99999999999988764
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.79 E-value=7e-19 Score=137.40 Aligned_cols=161 Identities=14% Similarity=0.177 Sum_probs=100.1
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----------cccc
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----------FHTI 74 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~ 74 (253)
+-....+|+++|++|||||||++++.+..+...+.++.|.......+.+.+ .+.+|||||... +...
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence 345668999999999999999999998764444455555544333333332 478999999742 2222
Q ss_pred chhhh---cCccEEEEEEeCCChhhHHH--HHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEE
Q psy9621 75 TTSYY---RGAMGIMLVYDITNEKSFDN--ILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV 149 (253)
Q Consensus 75 ~~~~~---~~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (253)
...++ ..++++++++|++++.+... +..|+. ..++|+++++||+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~------~~~~~~~~v~nK~D~~s--------------------- 151 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV------DSNIAVLVLLTKADKLA--------------------- 151 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH------HTTCCEEEEEECGGGSC---------------------
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH------HcCCCeEEEEecccCCC---------------------
Confidence 23343 57899999999988755432 223322 24789999999999851
Q ss_pred EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..+. ......+..++...+ +.++++||+++.|++++++.|.+.+.+
T Consensus 152 -------------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 152 -------------------------SGAR---KAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp -------------------------HHHH---HHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred -------------------------chhH---HHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 1100 011223444455554 578999999999999999999887644
No 172
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.79 E-value=1.6e-18 Score=157.56 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=88.2
Q ss_pred CC-ccccCceeEEEEEcCCCCcHHHHHHHhhcC--CCCC-----------cccC---ccceeeEE--EEEeeC-----Ce
Q psy9621 1 MA-KKTYDFLFKLLLIGDSGVGKTCVLFRFSDD--AFNT-----------TFIS---TIGIDFKI--KTVDLK-----GK 56 (253)
Q Consensus 1 m~-~~~~~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~-----------~~~~---~~~~~~~~--~~~~~~-----~~ 56 (253)
|+ ..+.+..+||+|+|+.|+|||||+++|+.. .+.. .+.+ ..+++... ..+.+. +.
T Consensus 1 ~~~~~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 80 (704)
T 2rdo_7 1 MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYE 80 (704)
T ss_pred CCCCCCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCC
Confidence 44 345577899999999999999999999742 1111 0000 11222221 222222 23
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 130 (253)
...+++|||||+..|...+..+++.+|++|+|+|+++.........|.. +. ..++|+++++||+|+...+
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVNKMDRMGAN 150 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEeCCCccccc
Confidence 3789999999999998888999999999999999998766555444432 22 2479999999999998764
No 173
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=2e-19 Score=158.44 Aligned_cols=122 Identities=15% Similarity=0.112 Sum_probs=82.0
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCC--CCC------------c------ccCccceeeEEEEEeeCCeEEEEEEEeC
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA--FNT------------T------FISTIGIDFKIKTVDLKGKKIKLQIWDT 65 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~--~~~------------~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 65 (253)
.+..+||+++|++|+|||||+++|+... ... . ..+..|++.......+......+.+|||
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT 89 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT 89 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence 3568999999999999999999998531 100 0 0011222222122223334577999999
Q ss_pred CCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc
Q psy9621 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER 131 (253)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 131 (253)
||+..|......+++.+|++|+|+|+++...... ..++..+ ...++|+++++||+|+.+...
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~---~~~~ipiivviNK~Dl~~~~~ 151 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT---RLRDTPILTFMNKLDRDIRDP 151 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH---TTTTCCEEEEEECTTSCCSCH
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH---HHcCCCEEEEEcCcCCccccH
Confidence 9999998888889999999999999988643222 2222222 225799999999999987643
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=1.7e-18 Score=157.20 Aligned_cols=213 Identities=15% Similarity=0.105 Sum_probs=127.8
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcC--CC------CC------------cccCccceeeEEEEEeeCCeEEEEEEEe
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDD--AF------NT------------TFISTIGIDFKIKTVDLKGKKIKLQIWD 64 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~--~~------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D 64 (253)
+.+...||+|+|++|+|||||+++|+.. .+ .. ....|+... ...+.. ....+.+||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~--~~~~i~liD 83 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFW--KDHRINIID 83 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEE--TTEEEEEEC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEE--CCeEEEEEE
Confidence 3467899999999999999999999831 11 00 011122211 122222 346799999
Q ss_pred CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc---cccccccccc
Q psy9621 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER---FHTITTSYYR 141 (253)
Q Consensus 65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~ 141 (253)
|||+..|...+..+++.+|++|+|+|+++..+......|.. +.. .++|+++++||+|+..... .+++.+.+..
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~ 159 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTGADLWLVIRTMQERLGA 159 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTCCHHHHHHHHHHTTCC
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCcccCCHHHHHHHHHHHhCC
Confidence 99999999889999999999999999999887777666653 222 4799999999999986642 1222221111
Q ss_pred cceee--------------------EEEEe-c---------cCccchhhHHHHHHhhhhhcCCCchhhhhh------ccc
Q psy9621 142 GAMGI--------------------MLVYD-I---------TNEKSFDNILKWLRNIDEHANEDPQVVNSW------VCK 185 (253)
Q Consensus 142 ~~~~~--------------------~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 185 (253)
..... ...|+ . ......+....|++++.+...+..+..... +..
T Consensus 160 ~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~ 239 (691)
T 1dar_A 160 RPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTE 239 (691)
T ss_dssp CEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCH
T ss_pred CccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCH
Confidence 10000 01111 0 011122234555555555443322211000 111
Q ss_pred hhHHH-----HHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621 186 HRGEA-----IAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225 (253)
Q Consensus 186 ~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 225 (253)
++... +....-+|++.+||.+|.|++.|++.+...+..-.
T Consensus 240 ~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~ 284 (691)
T 1dar_A 240 EELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPL 284 (691)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChh
Confidence 11111 11112269999999999999999999999886543
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.78 E-value=2.4e-20 Score=166.44 Aligned_cols=121 Identities=16% Similarity=0.167 Sum_probs=63.3
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCC--CCCc---------------------------ccCccceeeEEEEEeeC
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDA--FNTT---------------------------FISTIGIDFKIKTVDLK 54 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~ 54 (253)
......+||+++|++++|||||+++|+... .... .....|++.......+.
T Consensus 172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~ 251 (592)
T 3mca_A 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251 (592)
T ss_dssp SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence 345568999999999999999999996311 0000 00011222222223333
Q ss_pred CeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh---hH--HH-HHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 55 GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK---SF--DN-ILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~--~~-~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
.....+.+|||||++.|......++..+|++|+|+|+++.. ++ .. ....+..+. ..++| +++|+||+|+.
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~---~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLR---ALGISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHH---HSSCCCEEEEEECGGGG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHH---HcCCCeEEEEEeccccc
Confidence 34567999999999999888888899999999999998642 11 00 111111111 13566 89999999986
No 176
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.77 E-value=1.5e-19 Score=148.95 Aligned_cols=120 Identities=16% Similarity=0.206 Sum_probs=77.8
Q ss_pred ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc------ccCcc-----------------c---eee------------
Q psy9621 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT------FISTI-----------------G---IDF------------ 46 (253)
Q Consensus 5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~------~~~~~-----------------~---~~~------------ 46 (253)
+....++|+|+|.+|||||||+++|.+..+.+. ..|+. | .++
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 445678999999999999999999998876421 11210 0 000
Q ss_pred -----------EEEEEeeC-CeEEEEEEEeCCCcc-------------cccccchhhhcCccEEE-EEEeCCChhhHHHH
Q psy9621 47 -----------KIKTVDLK-GKKIKLQIWDTAGQE-------------RFHTITTSYYRGAMGIM-LVYDITNEKSFDNI 100 (253)
Q Consensus 47 -----------~~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~ 100 (253)
....+.+. .....+.+|||||.. .+..+...+++.++.+| +|+|+++..+....
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 00000000 012579999999964 23445667888888777 68999876544443
Q ss_pred HHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 101 LKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 101 ~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
..++..+. ..+.|+++|+||+|+.
T Consensus 182 ~~~~~~~~---~~~~~~i~V~NK~Dl~ 205 (299)
T 2aka_B 182 LKIAKEVD---PQGQRTIGVITKLDLM 205 (299)
T ss_dssp HHHHHHHC---TTCSSEEEEEECGGGS
T ss_pred HHHHHHhC---CCCCeEEEEEEccccC
Confidence 34444443 2578999999999986
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.76 E-value=6e-18 Score=136.82 Aligned_cols=117 Identities=13% Similarity=0.192 Sum_probs=83.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc------
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR------ 80 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------ 80 (253)
..+||+|+|++|+|||||+++|++..+... ..+..........+...+ ..+.+|||||+..+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 579999999999999999999998765322 112112222223333443 47999999999888766655553
Q ss_pred ---CccEEEEEEeCCChhhHHHH-HHHHHHHHHhcccc--cceeEEeeeeccc
Q psy9621 81 ---GAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANED--VEKMILGKTKDTA 127 (253)
Q Consensus 81 ---~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~iiv~nK~D~~ 127 (253)
++|++++|++++... +... ..|+..+......+ .|+++|+||+|+.
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 889999999988755 3333 46777777665443 4999999999985
No 178
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.76 E-value=1.2e-18 Score=162.21 Aligned_cols=165 Identities=14% Similarity=0.061 Sum_probs=108.3
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCC-------CCC-------cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA-------FNT-------TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 71 (253)
....+||+++|++++|||||+++|.+.. +.. ...++.|++.....+.+......+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3457999999999999999999998631 100 00122333333223334445567999999999999
Q ss_pred cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccccccccccccccccccceeeEEEE
Q psy9621 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVY 150 (253)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (253)
......++..+|++|+|+|+++....+ ..+++..+.. .++| +++++||+|+..
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~---lgIP~IIVVINKiDLv~---------------------- 426 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ---VGVPYIIVFLNKCDMVD---------------------- 426 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH---HTCSCEEEEEECCTTCC----------------------
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH---cCCCeEEEEEeeccccc----------------------
Confidence 888888899999999999999864332 2334444333 3688 789999999862
Q ss_pred eccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-----CceEEeeccCC--------CCHHHHHHHH
Q psy9621 151 DITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-----VRFMETSAKAN--------INIEKAFIEL 217 (253)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~gi~~l~~~l 217 (253)
..... .....+..++.+.++ ++++++||++| .|+++|++.|
T Consensus 427 ------------------------d~e~l--e~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL 480 (1289)
T 3avx_A 427 ------------------------DEELL--ELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFL 480 (1289)
T ss_dssp ------------------------CHHHH--HHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHH
T ss_pred ------------------------chhhH--HHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHH
Confidence 11000 012234455565554 68999999999 4688888888
Q ss_pred HHHHH
Q psy9621 218 ATAIY 222 (253)
Q Consensus 218 ~~~~~ 222 (253)
...+.
T Consensus 481 ~~~Ip 485 (1289)
T 3avx_A 481 DSYIP 485 (1289)
T ss_dssp HHTSC
T ss_pred hhhcC
Confidence 76553
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.75 E-value=2.1e-18 Score=156.59 Aligned_cols=124 Identities=18% Similarity=0.203 Sum_probs=87.6
Q ss_pred CCcc-ccCceeEEEEEcCCCCcHHHHHHHhhc--CCCCC-----------cc-----cCccceeeEEEEEeeCCeEEEEE
Q psy9621 1 MAKK-TYDFLFKLLLIGDSGVGKTCVLFRFSD--DAFNT-----------TF-----ISTIGIDFKIKTVDLKGKKIKLQ 61 (253)
Q Consensus 1 m~~~-~~~~~~ki~vvG~~~~GKStL~~~l~~--~~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~ 61 (253)
|+.. +.+...+|+|+|++|+|||||+++|+. +.+.. .+ .+.+.+......+.. ....+.
T Consensus 1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~--~~~~i~ 78 (693)
T 2xex_A 1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW--EGHRVN 78 (693)
T ss_dssp -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE--TTEEEE
T ss_pred CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE--CCeeEE
Confidence 4444 567889999999999999999999984 22210 00 000111111122222 246799
Q ss_pred EEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 62 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 130 (253)
+|||||+..|......+++.+|++|+|+|+++..+......|.. +.. .++|+++++||+|+...+
T Consensus 79 liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp EECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTCC
T ss_pred EEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccccc
Confidence 99999999998888999999999999999998877776655543 333 479999999999998754
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.74 E-value=1.2e-18 Score=143.58 Aligned_cols=165 Identities=17% Similarity=0.232 Sum_probs=86.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcC-CCCCcc--------cCccceeeEEEEEeeCCeEEEEEEEeCCCc-------cc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDD-AFNTTF--------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ-------ER 70 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~ 70 (253)
+..++|+|+|++|+|||||++++.+. .++... .++.+.......+...+....+.+|||+|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998764 343322 122222222222233344578999999998 55
Q ss_pred ccccch-------hhhcCc-------------cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621 71 FHTITT-------SYYRGA-------------MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 71 ~~~~~~-------~~~~~~-------------d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~ 130 (253)
+..+.. .+++.. ++++++.+.+. .++..+.. +.+... ....|+++|+||.|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-~~~~~iilV~~K~Dl~~-- 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-HNKVNIVPVIAKADTLT-- 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-TTTSCEEEEECCGGGSC--
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-HhcCCEEEEEEeCCCCC--
Confidence 555443 444332 23444444322 12333321 222222 25689999999999862
Q ss_pred ccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCH
Q psy9621 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINI 210 (253)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 210 (253)
.++. ....+++.++++.++++++++||+++ |+
T Consensus 170 --------------------------------------------~~e~---~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v 201 (301)
T 2qnr_A 170 --------------------------------------------LKER---ERLKKRILDEIEEHNIKIYHLPDAES-DE 201 (301)
T ss_dssp --------------------------------------------HHHH---HHHHHHHHHHHHHTTCCCCCCC-------
T ss_pred --------------------------------------------HHHH---HHHHHHHHHHHHHcCCeEEecCCccc-cc
Confidence 1110 02345677888899999999999999 99
Q ss_pred HHHHHHHHHHHHhcc
Q psy9621 211 EKAFIELATAIYDKT 225 (253)
Q Consensus 211 ~~l~~~l~~~~~~~~ 225 (253)
+++|..+.+.+....
T Consensus 202 ~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 202 DEDFKEQTRLLKASI 216 (301)
T ss_dssp ---CHHHHHHHHTTC
T ss_pred cHHHHHHHHHhhcCC
Confidence 999999999887644
No 181
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.74 E-value=2.4e-18 Score=141.82 Aligned_cols=134 Identities=17% Similarity=0.148 Sum_probs=108.7
Q ss_pred HHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh-hHHHHH
Q psy9621 24 CVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK-SFDNIL 101 (253)
Q Consensus 24 tL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~ 101 (253)
+|+.++..+.|. ..+.||+|..+. ..+..+ . .+.+||+ +++|..+++.+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~--~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDET--G-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCS--S-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCC--C-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688899988998 888999995544 333222 2 6899999 8999999999999999999999999997 788899
Q ss_pred HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhh
Q psy9621 102 KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181 (253)
Q Consensus 102 ~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (253)
.|+..+.. .++|+++|+||+|+. ..+.
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~----------------------------------------------~~~~---- 132 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLY----------------------------------------------DEDD---- 132 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGC----------------------------------------------CHHH----
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcC----------------------------------------------Cchh----
Confidence 99987755 479999999999986 2111
Q ss_pred hccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHH
Q psy9621 182 WVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 182 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
+ ++..++++.++ ++++++||++|.|++++|..+..
T Consensus 133 -v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 133 -L--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp -H--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred -H--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 1 34566666666 89999999999999999988753
No 182
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.73 E-value=4.9e-17 Score=138.84 Aligned_cols=161 Identities=9% Similarity=0.103 Sum_probs=109.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----ccccchhh---hcCcc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----FHTITTSY---YRGAM 83 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---~~~~d 83 (253)
.|+|+|++|||||||++++.+........+........-.+..++ ...+.+||+||..+ +..+...+ ...++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 589999999999999999987643211111101111122233332 24689999999743 23333333 34699
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621 84 GIMLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 161 (253)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (253)
.++.++|++ ...+..+..|..++..+.. ...|.++++||+|+...
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-------------------------------- 284 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-------------------------------- 284 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--------------------------------
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--------------------------------
Confidence 999999998 6667777777777665532 36899999999998611
Q ss_pred HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621 162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226 (253)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 226 (253)
. ......+..+..+++++.+||+++.|++++++.|.+.+.....
T Consensus 285 ---------------~------~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 285 ---------------E------AVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp ---------------H------HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred ---------------H------HHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 0 1122333444557899999999999999999999999977543
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.72 E-value=2.6e-17 Score=133.71 Aligned_cols=120 Identities=14% Similarity=0.103 Sum_probs=82.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchh---------
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTS--------- 77 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~--------- 77 (253)
...+||+|+|.+|+|||||+++|++..+... .+..+.+.......+......+.+|||||...+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 3579999999999999999999998765322 111222222222333334467999999999776544332
Q ss_pred hhcCccEEEEEEeCCChhhHHHH-HHHHHHHHHhcccc--cceeEEeeeecccc
Q psy9621 78 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANED--VEKMILGKTKDTAG 128 (253)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~iiv~nK~D~~~ 128 (253)
..+.+|++|+|+|++.. ++... ..|+..+......+ .|+++|+||+|+..
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 13479999999998764 34332 36777776654333 79999999999863
No 184
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.72 E-value=1.6e-17 Score=147.00 Aligned_cols=126 Identities=12% Similarity=0.077 Sum_probs=87.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCC-----------------CCcc---cCccceeeEEEEEeeCCeEEEEEEEeCC
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAF-----------------NTTF---ISTIGIDFKIKTVDLKGKKIKLQIWDTA 66 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~-----------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 66 (253)
....||+|+|+.++|||||..+|+...- ..++ ...-|++.....+.+.++...++|+|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 4678999999999999999999962110 0000 0111222222233333445779999999
Q ss_pred CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT 136 (253)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 136 (253)
|+..|..-....++-+|++|+|+|+...-.-+...-|... .. .++|++++.||+|..+.+-.+.+.
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a-~~---~~lp~i~fINK~Dr~~ad~~~~~~ 174 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC-RM---RATPVMTFVNKMDREALHPLDVMA 174 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH-HH---TTCCEEEEEECTTSCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH-HH---hCCceEEEEecccchhcchhHhhh
Confidence 9999999999999999999999999887655555555333 22 579999999999998876443333
No 185
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.71 E-value=3.6e-17 Score=137.49 Aligned_cols=170 Identities=14% Similarity=0.130 Sum_probs=109.5
Q ss_pred CCcHHHH--HHHhhcCCCCCc-------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621 19 GVGKTCV--LFRFSDDAFNTT-------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY 89 (253)
Q Consensus 19 ~~GKStL--~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 89 (253)
.+.|--| +.|+....+.++ ..+|+|++. ..+.+. .+.+.+|||+|++.++..+..++++++++||||
T Consensus 157 ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~ 232 (362)
T 1zcb_A 157 ESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLV 232 (362)
T ss_dssp TTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEE
T ss_pred ccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEE
Confidence 4445444 556665555543 335677654 334443 478999999999999999999999999999999
Q ss_pred eCCC----------hhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621 90 DITN----------EKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158 (253)
Q Consensus 90 d~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (253)
|+++ ..++.....|+..+.... ..++|+++++||+|+..++....
T Consensus 233 dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~------------------------ 288 (362)
T 1zcb_A 233 SSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVV------------------------ 288 (362)
T ss_dssp ETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTC------------------------
T ss_pred ECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhcccc------------------------
Confidence 9999 778999999999887652 36799999999999964321100
Q ss_pred hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHH--------H---HhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621 159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIA--------R---EYGVRFMETSAKANINIEKAFIELATAIYDKTSG 227 (253)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 227 (253)
.+..++++... .....+++..++ + ..++.+++|||+++.||+++|+.+...+.++.+.
T Consensus 289 --------~l~~~fp~y~g---~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~ 357 (362)
T 1zcb_A 289 --------SIKDYFLEFEG---DPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 357 (362)
T ss_dssp --------CGGGTCTTCCS---CTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred --------chhhcCccccC---CCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHH
Confidence 00111101000 001223333333 1 3457899999999999999999999998876654
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.70 E-value=1.5e-16 Score=144.52 Aligned_cols=118 Identities=15% Similarity=0.219 Sum_probs=80.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccc----eeeE---EEEEee-------------------------
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIG----IDFK---IKTVDL------------------------- 53 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~----~~~~---~~~~~~------------------------- 53 (253)
...++|+|+|.+|+|||||+|+|++....+ ...|+.. +.+. ..++.+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 457899999999999999999999876533 2222221 0000 001111
Q ss_pred ---------------------CCeE--EEEEEEeCCCccc---ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHH
Q psy9621 54 ---------------------KGKK--IKLQIWDTAGQER---FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107 (253)
Q Consensus 54 ---------------------~~~~--~~~~l~Dt~G~~~---~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i 107 (253)
+... ..+.+|||||... .......+++.+|++|+|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 1000 3589999999654 3345567889999999999999888777766665444
Q ss_pred HHhcccccceeEEeeeeccc
Q psy9621 108 DEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 108 ~~~~~~~~p~iiv~nK~D~~ 127 (253)
.. .+.|+++|+||+|+.
T Consensus 227 ~~---~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQV 243 (695)
T ss_dssp TT---SCCCEEEEEECGGGG
T ss_pred Hh---hCCCEEEEEECcccc
Confidence 32 367899999999986
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.70 E-value=1.2e-17 Score=141.07 Aligned_cols=120 Identities=14% Similarity=0.152 Sum_probs=78.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccc-----eee------------------------------------
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIG-----IDF------------------------------------ 46 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~-----~~~------------------------------------ 46 (253)
....|+|+|++|||||||+++|.+..+.+....++. +.+
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 456999999999999999999998776332221110 000
Q ss_pred -----------EEEEEee-CCeEEEEEEEeCCCcccc-------------cccchhhhcCccEEEEEEeCCChhhHHHHH
Q psy9621 47 -----------KIKTVDL-KGKKIKLQIWDTAGQERF-------------HTITTSYYRGAMGIMLVYDITNEKSFDNIL 101 (253)
Q Consensus 47 -----------~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~ 101 (253)
....+.+ ......+.+|||||...+ ..+...+++.+|++|+++|.++..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0000110 011235899999998766 455677899999999999876543221 2
Q ss_pred HHHHHHHHhcccccceeEEeeeeccccc
Q psy9621 102 KWLRNIDEHANEDVEKMILGKTKDTAGQ 129 (253)
Q Consensus 102 ~~~~~i~~~~~~~~p~iiv~nK~D~~~~ 129 (253)
.|+..+......+.|+++|+||+|+...
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCT
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCC
Confidence 3444444444467899999999999743
No 188
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.70 E-value=2.4e-16 Score=133.59 Aligned_cols=85 Identities=14% Similarity=0.261 Sum_probs=71.8
Q ss_pred ccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCC----------hhhHHHHHHHHHHHHHh
Q psy9621 41 TIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITN----------EKSFDNILKWLRNIDEH 110 (253)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~ 110 (253)
|+|++. ..+.+. .+.+++|||+|++.++.++..++++++++|||||+++ ..+|.....|+..+...
T Consensus 204 TiGi~~--~~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFE--TKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEE--EEeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 455544 334444 3789999999999999999999999999999999999 88999999999998775
Q ss_pred c-ccccceeEEeeeeccccc
Q psy9621 111 A-NEDVEKMILGKTKDTAGQ 129 (253)
Q Consensus 111 ~-~~~~p~iiv~nK~D~~~~ 129 (253)
. ..++|++|++||+|+..+
T Consensus 280 ~~~~~~piiLvgNK~DL~~~ 299 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLLAE 299 (402)
T ss_dssp TTCSSCCEEEEEECHHHHHH
T ss_pred ccCCCCeEEEEEEChhhhhh
Confidence 3 368999999999998643
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=8.6e-17 Score=136.97 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=48.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcc------cCccceeeEEEE---------------EeeCC-eEEEEEEEeCCC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTF------ISTIGIDFKIKT---------------VDLKG-KKIKLQIWDTAG 67 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~------~~~~~~~~~~~~---------------~~~~~-~~~~~~l~Dt~G 67 (253)
+||+++|.+|||||||+|+|.+....... .+..+..+.... ..+++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632211 122222111000 01122 247799999999
Q ss_pred ccc----ccccch---hhhcCccEEEEEEeCCCh
Q psy9621 68 QER----FHTITT---SYYRGAMGIMLVYDITNE 94 (253)
Q Consensus 68 ~~~----~~~~~~---~~~~~~d~~ilv~d~~~~ 94 (253)
... ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 853 333333 346899999999999875
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=6.9e-17 Score=138.01 Aligned_cols=161 Identities=16% Similarity=0.217 Sum_probs=82.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCC-Ccc-------cCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc-----
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTF-------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT----- 73 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----- 73 (253)
+..++|+|+|++|||||||+++|.+..+. ..+ .++.+.......+...+....+.+||++|...+..
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 45678999999999999999999986653 211 12222222111122223345789999999865311
Q ss_pred --------------------cchhhhcCccEEEEEEeCCCh-hhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccc
Q psy9621 74 --------------------ITTSYYRGAMGIMLVYDITNE-KSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQER 131 (253)
Q Consensus 74 --------------------~~~~~~~~~d~~ilv~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 131 (253)
+.+.++.++++.+++|.+..- .++.... .|+..+. .++|+++|+||+|+..
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~--- 181 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLT--- 181 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCcc---
Confidence 122345566665555555432 3444443 5655553 3789999999999862
Q ss_pred cccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhcc--chhHHHHHHHhCCceEEeeccCCCC
Q psy9621 132 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC--KHRGEAIAREYGVRFMETSAKANIN 209 (253)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~g 209 (253)
..+ +. ...+.+.+..++++++++|++++.+
T Consensus 182 -------------------------------------------~~e-----v~~~k~~i~~~~~~~~i~~~~~sa~~~~~ 213 (418)
T 2qag_C 182 -------------------------------------------PEE-----CQQFKKQIMKEIQEHKIKIYEFPETDDEE 213 (418)
T ss_dssp -------------------------------------------HHH-----HHHHHHHHHHHHHHHTCCCCCCC------
T ss_pred -------------------------------------------HHH-----HHHHHHHHHHHHHHcCCeEEeCCCCCCcC
Confidence 111 22 2456777788899999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy9621 210 IEKAFIELATAIY 222 (253)
Q Consensus 210 i~~l~~~l~~~~~ 222 (253)
++++|..+...+.
T Consensus 214 v~~~~~~l~~~iP 226 (418)
T 2qag_C 214 ENKLVKKIKDRLP 226 (418)
T ss_dssp -----------CC
T ss_pred HHHHHHHHHhhCC
Confidence 9998887776544
No 191
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.67 E-value=8.7e-18 Score=151.38 Aligned_cols=214 Identities=14% Similarity=0.128 Sum_probs=123.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc--CCCC------Cc-----ccC---ccceeeEEEEEeeCCeEEEEEEEeCCCccccc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD--DAFN------TT-----FIS---TIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH 72 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~--~~~~------~~-----~~~---~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 72 (253)
..||+++|+.++|||||..+|+. +... .. +.+ .-|++.....+.+..+...++++|||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 57899999999999999999862 1111 00 000 11334443444455566779999999999999
Q ss_pred ccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeE-----
Q psy9621 73 TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM----- 147 (253)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~----- 147 (253)
......++-+|++|+|+|+...-.-+....|... .. .++|.+++.||+|..+.+-.+.+.+.........+
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a-~~---~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL-RK---MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHH-HH---HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHH-HH---cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 9999999999999999999876544443444333 22 46899999999999877644333322111110000
Q ss_pred ------EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 148 ------LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 148 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
...+....+..+.+.+..+++.+....................+....-.|++..||+++.|++.|++.+...+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 00001111112222211111111110000000000111111222222237999999999999999999998877
Q ss_pred HhccC
Q psy9621 222 YDKTS 226 (253)
Q Consensus 222 ~~~~~ 226 (253)
.....
T Consensus 238 p~p~~ 242 (638)
T 3j25_A 238 YSSTH 242 (638)
T ss_dssp CCSGG
T ss_pred cCccc
Confidence 65443
No 192
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.66 E-value=2.3e-16 Score=130.81 Aligned_cols=67 Identities=13% Similarity=0.238 Sum_probs=45.1
Q ss_pred EEEEEEeCCCccc-------------ccccchhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeee
Q psy9621 58 IKLQIWDTAGQER-------------FHTITTSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKT 123 (253)
Q Consensus 58 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK 123 (253)
..+.+|||||... +......+++.+|++|+|+|.++.. .-.....+...+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4699999999753 3445566889999999999974332 111111222222 2357899999999
Q ss_pred eccc
Q psy9621 124 KDTA 127 (253)
Q Consensus 124 ~D~~ 127 (253)
+|+.
T Consensus 208 ~Dl~ 211 (315)
T 1jwy_B 208 LDLM 211 (315)
T ss_dssp TTSS
T ss_pred cccC
Confidence 9986
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.65 E-value=2e-16 Score=124.40 Aligned_cols=157 Identities=16% Similarity=0.094 Sum_probs=92.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceee--------------EEEEEee----------------CCe
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDF--------------KIKTVDL----------------KGK 56 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~ 56 (253)
....+|+|+|.+|||||||+++|............+..++ ....+.. ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 3567999999999999999999986422110000000010 0011111 112
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT 136 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 136 (253)
...+.+|||+|+..... .+....+.+|+|+|+++.... ...+... .+.|+++++||+|+...
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~------- 169 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEA------- 169 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHH-------
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcc-------
Confidence 35688999998511111 111356889999998765421 1111111 25899999999998621
Q ss_pred ccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh--CCceEEeeccCCCCHHHHH
Q psy9621 137 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY--GVRFMETSAKANINIEKAF 214 (253)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~ 214 (253)
.. .......+..+.. +.+++++||++|.|++++|
T Consensus 170 ---------------------------------------~~-----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~ 205 (221)
T 2wsm_A 170 ---------------------------------------VG-----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWI 205 (221)
T ss_dssp ---------------------------------------HT-----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHH
T ss_pred ---------------------------------------hh-----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHH
Confidence 00 1122333344443 3789999999999999999
Q ss_pred HHHHHHHHhcc
Q psy9621 215 IELATAIYDKT 225 (253)
Q Consensus 215 ~~l~~~~~~~~ 225 (253)
+.|.+.+....
T Consensus 206 ~~l~~~~~~~~ 216 (221)
T 2wsm_A 206 DFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHH
Confidence 99998876543
No 194
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.64 E-value=1.1e-15 Score=139.32 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=86.9
Q ss_pred CCcc-ccCceeEEEEEcCCCCcHHHHHHHhhcC--------CCCCc-----c---cCccceeeE--EEEEeeC-----Ce
Q psy9621 1 MAKK-TYDFLFKLLLIGDSGVGKTCVLFRFSDD--------AFNTT-----F---ISTIGIDFK--IKTVDLK-----GK 56 (253)
Q Consensus 1 m~~~-~~~~~~ki~vvG~~~~GKStL~~~l~~~--------~~~~~-----~---~~~~~~~~~--~~~~~~~-----~~ 56 (253)
|+.. |-+...||+|+|+.++|||||..+|+.. ..... + ...-|++.. ..++.+. .+
T Consensus 4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~ 83 (709)
T 4fn5_A 4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD 83 (709)
T ss_dssp --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence 5654 5588999999999999999999998621 11100 0 011122222 2233332 23
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER 131 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~ 131 (253)
.+.++++|||||.+|..-....++-+|++|+|+|+...-.-+...-|.+... .++|.++++||+|....+-
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~~a~~ 154 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQGANF 154 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSSTTCCH
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEccccccCccH
Confidence 6889999999999999999999999999999999987665555455544432 4799999999999987653
No 195
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.62 E-value=2e-16 Score=133.29 Aligned_cols=119 Identities=15% Similarity=0.159 Sum_probs=70.8
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcc------cCcc-------------------------------------
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTF------ISTI------------------------------------- 42 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~------~~~~------------------------------------- 42 (253)
.....+|+|+|.+|||||||+++|.+..+.+.. .|+.
T Consensus 28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~ 107 (353)
T 2x2e_A 28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 107 (353)
T ss_dssp GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence 345679999999999999999999987764221 1220
Q ss_pred ------ceeeEEEEEeeC-CeEEEEEEEeCCCccc-------------ccccchhhhcCccEEEE-EEeCCChhhHHHHH
Q psy9621 43 ------GIDFKIKTVDLK-GKKIKLQIWDTAGQER-------------FHTITTSYYRGAMGIML-VYDITNEKSFDNIL 101 (253)
Q Consensus 43 ------~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~il-v~d~~~~~s~~~~~ 101 (253)
|+......+.+. .....+.+|||||... +..+...|++.++.+|+ |.|.+....-....
T Consensus 108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 000000011111 1135699999999632 34455667766665555 55655432211212
Q ss_pred HHHHHHHHhcccccceeEEeeeeccc
Q psy9621 102 KWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 102 ~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.++.. ....+.|+++|+||+|+.
T Consensus 188 ~i~~~---~~~~~~~~i~V~NK~Dl~ 210 (353)
T 2x2e_A 188 KVAKE---VDPQGQRTIGVITKLDLM 210 (353)
T ss_dssp HHHHH---HCTTCTTEEEEEECGGGS
T ss_pred HHHHH---hCcCCCceEEEecccccc
Confidence 23333 333579999999999986
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.61 E-value=9.5e-18 Score=132.51 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=91.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeE------------EEEEeeC-Ce-----------------
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFK------------IKTVDLK-GK----------------- 56 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~----------------- 56 (253)
...++|+|+|++|||||||+++|....+...+.++++.++. ...+.+. +.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 35789999999999999999999976555444444444432 1222221 11
Q ss_pred --EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccc
Q psy9621 57 --KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHT 134 (253)
Q Consensus 57 --~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~ 134 (253)
...+.++|++|.-... ..+-...+..+.++|......... ..... ...|.++++||+|+...
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~----- 179 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADA----- 179 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHH-----
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCch-----
Confidence 1145566666631110 011123344566666432211100 00011 14788999999998621
Q ss_pred ccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh--CCceEEeeccCCCCHHH
Q psy9621 135 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY--GVRFMETSAKANINIEK 212 (253)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~ 212 (253)
.. .......++++.+ +.+++++||++|.|+++
T Consensus 180 -----------------------------------------~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 213 (226)
T 2hf9_A 180 -----------------------------------------VG-----ADIKKMENDAKRINPDAEVVLLSLKTMEGFDK 213 (226)
T ss_dssp -----------------------------------------HT-----CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHH
T ss_pred -----------------------------------------hH-----HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHH
Confidence 10 1223344555544 47999999999999999
Q ss_pred HHHHHHHHHHh
Q psy9621 213 AFIELATAIYD 223 (253)
Q Consensus 213 l~~~l~~~~~~ 223 (253)
+|+.|.+.+..
T Consensus 214 l~~~l~~~~~~ 224 (226)
T 2hf9_A 214 VLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.60 E-value=3e-15 Score=138.64 Aligned_cols=119 Identities=16% Similarity=0.161 Sum_probs=87.4
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCC------------CCC----ccc--CccceeeEEEEEe------------eCC
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA------------FNT----TFI--STIGIDFKIKTVD------------LKG 55 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~------------~~~----~~~--~~~~~~~~~~~~~------------~~~ 55 (253)
.+..+||+|+|+.|+|||||+++|+... +.. ... .|+........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998531 100 001 1222222222222 133
Q ss_pred eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccc
Q psy9621 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128 (253)
Q Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 128 (253)
....+++|||||+.+|...+..+++.+|++|+|+|+++..++.....|.... ..++|+++++||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----HcCCCeEEEEECCCcch
Confidence 4788999999999999999999999999999999999988888766665433 24789999999999974
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.59 E-value=1.2e-14 Score=121.66 Aligned_cols=83 Identities=18% Similarity=0.157 Sum_probs=55.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCccc--CccceeeEEEEEeeCCe---------------EEEEEEEeCCCcccc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFI--STIGIDFKIKTVDLKGK---------------KIKLQIWDTAGQERF 71 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 71 (253)
.++|+++|.+|||||||+++|.+..+..... .|++.+.. .+.+++. ...+.+|||||..++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 3689999999999999999999866432211 12222221 2333332 156999999998765
Q ss_pred c----ccch---hhhcCccEEEEEEeCCC
Q psy9621 72 H----TITT---SYYRGAMGIMLVYDITN 93 (253)
Q Consensus 72 ~----~~~~---~~~~~~d~~ilv~d~~~ 93 (253)
. .+.. .+++.+|++++|+|+++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 3 3333 34789999999999986
No 199
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.58 E-value=1.7e-15 Score=127.55 Aligned_cols=107 Identities=9% Similarity=0.060 Sum_probs=69.8
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT 136 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 136 (253)
...+.+|||||... ........+|++|+|+|.+..+.+..+.. . -.+.|.++|+||+|+......
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~-------~-~~~~p~ivVlNK~Dl~~~~~~---- 235 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK-------G-VLELADIVVVNKADGEHHKEA---- 235 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT-------T-SGGGCSEEEEECCCGGGHHHH----
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH-------h-HhhcCCEEEEECCCCcChhHH----
Confidence 35789999999532 23345689999999999876554422221 1 135799999999998621000
Q ss_pred ccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH-------HhCCceEEeeccCCCC
Q psy9621 137 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-------EYGVRFMETSAKANIN 209 (253)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~g 209 (253)
. ....+...... .++.+++++||++|.|
T Consensus 236 ----------------------~-----------------------~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~G 270 (355)
T 3p32_A 236 ----------------------R-----------------------LAARELSAAIRLIYPREALWRPPVLTMSAVEGRG 270 (355)
T ss_dssp ----------------------H-----------------------HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBS
T ss_pred ----------------------H-----------------------HHHHHHHHHHhhccccccCCCCceEEEEcCCCCC
Confidence 0 00011111111 1257899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy9621 210 IEKAFIELATAIYD 223 (253)
Q Consensus 210 i~~l~~~l~~~~~~ 223 (253)
++++++.|.+.+..
T Consensus 271 i~~L~~~i~~~~~~ 284 (355)
T 3p32_A 271 LAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
No 200
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.55 E-value=6e-15 Score=130.61 Aligned_cols=125 Identities=15% Similarity=0.170 Sum_probs=84.3
Q ss_pred cccCceeEEEEEcCCCCcHHHHHHHhhcCCCC---CcccCccceeeEEEE------------------------------
Q psy9621 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFN---TTFISTIGIDFKIKT------------------------------ 50 (253)
Q Consensus 4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~---~~~~~~~~~~~~~~~------------------------------ 50 (253)
...+..++|+|+|.+|+|||||+|+|++..+. ....++... .....
T Consensus 60 ~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~ 138 (550)
T 2qpt_A 60 ADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT 138 (550)
T ss_dssp TTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------C
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence 34566789999999999999999999987763 222222110 00000
Q ss_pred -------EeeCCe-EEEEEEEeCCCccc-----------ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhc
Q psy9621 51 -------VDLKGK-KIKLQIWDTAGQER-----------FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA 111 (253)
Q Consensus 51 -------~~~~~~-~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~ 111 (253)
+.++.. ...+.+|||||... |......++..+|++|+|+|+++.........|+..+..
T Consensus 139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-- 216 (550)
T 2qpt_A 139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-- 216 (550)
T ss_dssp CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--
T ss_pred ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--
Confidence 000000 02589999999864 334556678899999999999886545555666665533
Q ss_pred ccccceeEEeeeecccccccc
Q psy9621 112 NEDVEKMILGKTKDTAGQERF 132 (253)
Q Consensus 112 ~~~~p~iiv~nK~D~~~~~~~ 132 (253)
.+.|+++|+||+|+...+..
T Consensus 217 -~~~pvilVlNK~Dl~~~~el 236 (550)
T 2qpt_A 217 -HEDKIRVVLNKADMVETQQL 236 (550)
T ss_dssp -CGGGEEEEEECGGGSCHHHH
T ss_pred -cCCCEEEEEECCCccCHHHH
Confidence 46899999999999865443
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.51 E-value=1.1e-13 Score=116.42 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCC------cccCccceeeEEEEEeeCC-------------------eEEEEEEEe
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNT------TFISTIGIDFKIKTVDLKG-------------------KKIKLQIWD 64 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~D 64 (253)
++|+++|.+|||||||++++.+..... +..|+++. ..+.+ ....+.+||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~------~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV------VPLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE------EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee------EecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 589999999999999999998754211 12233332 12221 235699999
Q ss_pred CCCccccc----ccchh---hhcCccEEEEEEeCCC
Q psy9621 65 TAGQERFH----TITTS---YYRGAMGIMLVYDITN 93 (253)
Q Consensus 65 t~G~~~~~----~~~~~---~~~~~d~~ilv~d~~~ 93 (253)
|||..++. .+... .++.+|++++|+|+++
T Consensus 76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 99987652 33333 4789999999999985
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.5e-13 Score=113.38 Aligned_cols=208 Identities=14% Similarity=0.098 Sum_probs=114.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc----cccch---hhh
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF----HTITT---SYY 79 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~---~~~ 79 (253)
....+|+++|.||||||||+|+|.+........|....+...-.+.+.+ .++.++||||..+- .++.. ..+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 3456899999999999999999998664433333322333333455554 56899999997432 22222 345
Q ss_pred cCccEEEEEEeCCChhhHHHHHHHHHHHHHhc--ccccceeEEeeeeccccccccccccc-------------cccccce
Q psy9621 80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHA--NEDVEKMILGKTKDTAGQERFHTITT-------------SYYRGAM 144 (253)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~-------------~~~~~~~ 144 (253)
+.+|++++|+|++++.. .......++.... -...|.+++.||.|..+-........ .+-....
T Consensus 148 ~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~k 225 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSA 225 (376)
T ss_dssp HHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSE
T ss_pred HhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCC
Confidence 78999999999998743 2222223332221 14578899999999865432221111 1223344
Q ss_pred eeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621 145 GIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYD 223 (253)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 223 (253)
..+...+++..+. .+.. ........+ .......+.....+++..... -.++++|+..+.|+++|...+...+--
T Consensus 226 pv~~~~nv~eddl-~d~~---~~~~~~~~p-~i~v~nKid~~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~L 300 (376)
T 4a9a_A 226 EIAFRCDATVDDL-IDVL---EASSRRYMP-AIYVLNKIDSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNL 300 (376)
T ss_dssp EEEECSCCCHHHH-HHHH---TTTTCEEEC-EEEEEECGGGSCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCC
T ss_pred CeeecccCCHHHH-HHHH---HHHHhhccc-eEEEEecccccCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCC
Confidence 4555555543322 2211 110100000 000000011111222222222 357899999999999999988887643
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=115.63 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=36.2
Q ss_pred EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
..+.++||+|.... .......+|++++|+|++.+.....+.. .+ ...|.++++||+|+.
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGD 225 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGG
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCC
Confidence 46899999996321 2345678999999999987643222211 11 246889999999985
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.46 E-value=6.1e-13 Score=107.14 Aligned_cols=135 Identities=14% Similarity=-0.033 Sum_probs=72.6
Q ss_pred EEEEEEeCCCcccccccch------hhhcCccEEEEEEeCCChhhHHHHHHHHHHH-HHhcccccceeEEeeeecccccc
Q psy9621 58 IKLQIWDTAGQERFHTITT------SYYRGAMGIMLVYDITNEKSFDNILKWLRNI-DEHANEDVEKMILGKTKDTAGQE 130 (253)
Q Consensus 58 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~iiv~nK~D~~~~~ 130 (253)
+.+.+|||||......... ..+.. +++|+++|.....+........... ......++|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4799999999876533221 13455 7888888875432222221111111 11112468999999999986221
Q ss_pred ccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcC-----CCchhhhhhccchhHHHHHHHhC--CceEEee
Q psy9621 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-----EDPQVVNSWVCKHRGEAIAREYG--VRFMETS 203 (253)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~S 203 (253)
...++.+++.+...... +.... .......++++.++ .+++++|
T Consensus 188 --------------------------~~~~~~~~l~~~~~~~~~l~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~S 237 (262)
T 1yrb_A 188 --------------------------EKERHRKYFEDIDYLTARLKLDPSMQG----LMAYKMCSMMTEVLPPVRVLYLS 237 (262)
T ss_dssp --------------------------HHHHHHHHHHCHHHHHHHHHHCCSHHH----HHHHHHHHHHHHHSCCCCCEECC
T ss_pred --------------------------cHHHHHHHHhChHHHHHHHhccccccc----hhHhHHHHHHHHhcCcccceEEE
Confidence 11222222221111000 00000 00001112234444 5899999
Q ss_pred ccCCCCHHHHHHHHHHHHHh
Q psy9621 204 AKANINIEKAFIELATAIYD 223 (253)
Q Consensus 204 a~~~~gi~~l~~~l~~~~~~ 223 (253)
|+++.|++++++.|.+.+..
T Consensus 238 A~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 238 AKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred ecCcccHHHHHHHHHHHhcc
Confidence 99999999999999887754
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.46 E-value=4.1e-14 Score=118.49 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=65.0
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT 136 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 136 (253)
...+.+|||||...... .....+|++++|+|.+....+..+.. . ..+.|.++|+||+|+.+...
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~-----~~~~p~ivv~NK~Dl~~~~~----- 211 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---G-----LMEVADLIVINKDDGDNHTN----- 211 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---H-----HHHHCSEEEECCCCTTCHHH-----
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---h-----hhcccCEEEEECCCCCChHH-----
Confidence 35699999999765432 34689999999999876543211111 0 02578999999999862100
Q ss_pred ccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH-------hCCceEEeeccCCCC
Q psy9621 137 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE-------YGVRFMETSAKANIN 209 (253)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~g 209 (253)
+. .+. ...++.... +..+++++||++|.|
T Consensus 212 ---------------------~~---~~~--------------------~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~g 247 (341)
T 2p67_A 212 ---------------------VA---IAR--------------------HMYESALHILRRKYDEWQPRVLTCSALEKRG 247 (341)
T ss_dssp ---------------------HH---HHH--------------------HHHHHHHHHSCCSBTTBCCEEEECBGGGTBS
T ss_pred ---------------------HH---HHH--------------------HHHHHHHHhccccccCCCCcEEEeeCCCCCC
Confidence 00 000 011111111 235789999999999
Q ss_pred HHHHHHHHHHHHH
Q psy9621 210 IEKAFIELATAIY 222 (253)
Q Consensus 210 i~~l~~~l~~~~~ 222 (253)
++++++.|...+.
T Consensus 248 i~~L~~~l~~~~~ 260 (341)
T 2p67_A 248 IDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 206
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.40 E-value=1.1e-12 Score=107.98 Aligned_cols=97 Identities=18% Similarity=0.115 Sum_probs=78.7
Q ss_pred cccccccchhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceee
Q psy9621 68 QERFHTITTSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGI 146 (253)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (253)
++++..+.+.++.++|++++|+|++++. ++..+.+|+..+.. .++|+++|+||+|+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~------------------- 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLL------------------- 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGC-------------------
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCC-------------------
Confidence 6778888888999999999999999986 89888999887654 579999999999986
Q ss_pred EEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhcc-chhHHHHHHHhCCceEEeeccCCCCHHHHHHHHH
Q psy9621 147 MLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC-KHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218 (253)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 218 (253)
+... +. .....++++.++++++++||++|.|+++|+..+.
T Consensus 124 ---------------------------~~~~-----v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 124 ---------------------------NEEE-----KKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp ---------------------------CHHH-----HHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred ---------------------------Cccc-----cHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 1111 11 2344566677789999999999999999998753
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.34 E-value=2.3e-12 Score=116.84 Aligned_cols=118 Identities=16% Similarity=0.178 Sum_probs=72.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCcc-------------------------------------------
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTI------------------------------------------- 42 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~------------------------------------------- 42 (253)
....+|+|+|.+++|||||+|+|++..+-+ ...++.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 456799999999999999999999876522 111000
Q ss_pred -----ceeeEEEEEeeC-CeEEEEEEEeCCCccc-------------ccccchhhh-cCccEEEEEEeCCChhhHHHHHH
Q psy9621 43 -----GIDFKIKTVDLK-GKKIKLQIWDTAGQER-------------FHTITTSYY-RGAMGIMLVYDITNEKSFDNILK 102 (253)
Q Consensus 43 -----~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~ 102 (253)
+++.....+.+. .....+.++||||... +..+...++ ..+|++++|+|++....-.....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 000000111110 0122478999999643 122333444 57899999999987543333223
Q ss_pred HHHHHHHhcccccceeEEeeeeccc
Q psy9621 103 WLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 103 ~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
++..+. ..+.|+++|+||+|+.
T Consensus 209 ll~~L~---~~g~pvIlVlNKiDlv 230 (772)
T 3zvr_A 209 IAKEVD---PQGQRTIGVITKLDLM 230 (772)
T ss_dssp HHHHHC---TTCSSEEEEEECTTSS
T ss_pred HHHHHH---hcCCCEEEEEeCcccC
Confidence 333332 3578999999999987
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.32 E-value=6.8e-12 Score=104.70 Aligned_cols=104 Identities=10% Similarity=0.064 Sum_probs=63.1
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT 136 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 136 (253)
...+.++||+|..+-. ......+|.+++++|.+..+....+... + ..+|.++++||+|+.
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i-----~~~~~ivvlNK~Dl~--------- 206 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---I-----FELADMIAVNKADDG--------- 206 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---H-----HHHCSEEEEECCSTT---------
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---H-----hccccEEEEEchhcc---------
Confidence 3569999999975321 2345789999999998654322111111 1 135778888999974
Q ss_pred ccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH----------hCCceEEeeccC
Q psy9621 137 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE----------YGVRFMETSAKA 206 (253)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~ 206 (253)
.... ......+.+... +..+++.+||++
T Consensus 207 -------------------------------------~~~~-----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~ 244 (337)
T 2qm8_A 207 -------------------------------------DGER-----RASAAASEYRAALHILTPPSATWTPPVVTISGLH 244 (337)
T ss_dssp -------------------------------------CCHH-----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTT
T ss_pred -------------------------------------Cchh-----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCC
Confidence 1111 111111222211 135789999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy9621 207 NINIEKAFIELATAIY 222 (253)
Q Consensus 207 ~~gi~~l~~~l~~~~~ 222 (253)
+.|++++++.|.+...
T Consensus 245 g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 245 GKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=104.80 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=50.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCe---------------EEEEEEEeCCCccccc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK---------------KIKLQIWDTAGQERFH 72 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 72 (253)
..++|+++|.+|||||||++++.+..+.....|....+.....+.+.+. ...+.+|||||...+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4579999999999999999999987653332332222333333444332 2359999999987643
Q ss_pred c-------cchhhhcCccEEEEEEeCCChhhH
Q psy9621 73 T-------ITTSYYRGAMGIMLVYDITNEKSF 97 (253)
Q Consensus 73 ~-------~~~~~~~~~d~~ilv~d~~~~~s~ 97 (253)
. ....+++.+|++++|+|+++..++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC------
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 3 334567899999999999865443
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.20 E-value=3.1e-10 Score=95.99 Aligned_cols=86 Identities=20% Similarity=0.167 Sum_probs=56.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcCCC-CCcccCccceeeEEEEEeeCCe---------------EEEEEEEeCCCcccc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDDAF-NTTFISTIGIDFKIKTVDLKGK---------------KIKLQIWDTAGQERF 71 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 71 (253)
...+|+++|++|||||||+++|.+... .....|....+...-.+.+.+. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 356899999999999999999998665 3332332222332233444431 135899999996432
Q ss_pred -------cccchhhhcCccEEEEEEeCCC
Q psy9621 72 -------HTITTSYYRGAMGIMLVYDITN 93 (253)
Q Consensus 72 -------~~~~~~~~~~~d~~ilv~d~~~ 93 (253)
.+.....++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2223345689999999999864
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.20 E-value=8.2e-12 Score=95.47 Aligned_cols=109 Identities=7% Similarity=0.001 Sum_probs=69.2
Q ss_pred CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHH---HHHhc--ccccceeEEeeee-cccccccccccccccc
Q psy9621 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN---IDEHA--NEDVEKMILGKTK-DTAGQERFHTITTSYY 140 (253)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~---i~~~~--~~~~p~iiv~nK~-D~~~~~~~~~~~~~~~ 140 (253)
|+..++.+|+.|+.++|++|||+|.++++.++ ....+.+ +.... ..+.|++|++||. |+.++-+..++
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI----- 184 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYL----- 184 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHH-----
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHH-----
Confidence 78889999999999999999999999986554 3443322 22222 1679999999995 67533221000
Q ss_pred ccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621 141 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220 (253)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 220 (253)
...+. ...+ ...+.+..|||++|+|+.+.++||...
T Consensus 185 ---------------------------------------~e~L~---L~~l--~R~W~Iq~csA~TGeGL~EGLdWL~~~ 220 (227)
T 3l82_B 185 ---------------------------------------AHELH---LNLL--NHPWLVQDTEAETLTGFLNGIEWILEE 220 (227)
T ss_dssp ---------------------------------------HHHTT---GGGG--CSCEEEEEEETTTCTTHHHHHHHHTTT
T ss_pred ---------------------------------------HHHcC---CcCC--CCCEEEEEeECCCCcCHHHHHHHHHHH
Confidence 00011 1111 235678999999999999999999877
Q ss_pred HHhcc
Q psy9621 221 IYDKT 225 (253)
Q Consensus 221 ~~~~~ 225 (253)
+..++
T Consensus 221 l~~k~ 225 (227)
T 3l82_B 221 VESKR 225 (227)
T ss_dssp TTTC-
T ss_pred HHhhc
Confidence 75543
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.03 E-value=1.2e-10 Score=93.36 Aligned_cols=111 Identities=7% Similarity=0.010 Sum_probs=73.4
Q ss_pred CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHH---HHHHhc--ccccceeEEeee-ecccccccccccccc
Q psy9621 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR---NIDEHA--NEDVEKMILGKT-KDTAGQERFHTITTS 138 (253)
Q Consensus 65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~---~i~~~~--~~~~p~iiv~nK-~D~~~~~~~~~~~~~ 138 (253)
.+|+..++.+|+.|+.++|++|+|+|.+|++.++ ....+. .+.... ..+.|++|++|| .|+.++.+..++
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI--- 269 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYL--- 269 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHH---
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHH---
Confidence 3578889999999999999999999999987655 333222 232221 268999999997 587643221000
Q ss_pred ccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHH
Q psy9621 139 YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218 (253)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 218 (253)
...+.. ..+ .....+..|||++|+|+.+-+++|.
T Consensus 270 -----------------------------------------~e~L~L---~~l--~r~W~Iq~csA~tGeGL~EGldWL~ 303 (312)
T 3l2o_B 270 -----------------------------------------AHELHL---NLL--NHPWLVQDTEAETLTGFLNGIEWIL 303 (312)
T ss_dssp -----------------------------------------HHHTTG---GGG--CSCEEEEEEETTTCTTHHHHHHHHH
T ss_pred -----------------------------------------HHHcCC---ccC--CCcEEEEecccCCCcCHHHHHHHHH
Confidence 000111 111 2346789999999999999999999
Q ss_pred HHHHhcc
Q psy9621 219 TAIYDKT 225 (253)
Q Consensus 219 ~~~~~~~ 225 (253)
..+..++
T Consensus 304 ~~l~~k~ 310 (312)
T 3l2o_B 304 EEVESKR 310 (312)
T ss_dssp HHSCC--
T ss_pred HHHHhhc
Confidence 8876543
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.95 E-value=4.2e-10 Score=98.16 Aligned_cols=114 Identities=17% Similarity=0.199 Sum_probs=64.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhh------cCCCCC----cccCc-----------cceeeEEEEEe-------------
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFS------DDAFNT----TFIST-----------IGIDFKIKTVD------------- 52 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~------~~~~~~----~~~~~-----------~~~~~~~~~~~------------- 52 (253)
.....|+|+|.+||||||++++|. +.+... .+++. .++++......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999997 322110 01110 01221110000
Q ss_pred eCCeEEEEEEEeCCCcccccc-cchh---h--hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccce-eEEeeeec
Q psy9621 53 LKGKKIKLQIWDTAGQERFHT-ITTS---Y--YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEK-MILGKTKD 125 (253)
Q Consensus 53 ~~~~~~~~~l~Dt~G~~~~~~-~~~~---~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~D 125 (253)
.......+.+|||||...... +... . ...+|.+++|+|.+...... .....+.. .+|+ .+|+||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCc
Confidence 000345799999999864321 1111 1 23789999999998754321 12222222 2675 89999999
Q ss_pred cc
Q psy9621 126 TA 127 (253)
Q Consensus 126 ~~ 127 (253)
..
T Consensus 252 ~~ 253 (504)
T 2j37_W 252 GH 253 (504)
T ss_dssp SC
T ss_pred cc
Confidence 86
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.85 E-value=4.7e-09 Score=88.54 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=73.8
Q ss_pred CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceee
Q psy9621 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGI 146 (253)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (253)
..+.|......+.+.++++++|+|++++. ..|...+.+.. .+.|+++|+||+|+..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~------------------ 110 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIP------------------ 110 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSC------------------
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCC------------------
Confidence 45778888889999999999999999864 45666666655 4799999999999962
Q ss_pred EEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 147 MLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
.... .....+....+++..|+ +++++||++|.|++++++.|.+..
T Consensus 111 ----------------------------~~~~--~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 111 ----------------------------KSVK--HDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp ----------------------------TTSC--HHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------------------------cccC--HHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 1100 00111223444666776 799999999999999999987654
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.73 E-value=2.2e-09 Score=90.56 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=65.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcC------CCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc--------
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDD------AFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI-------- 74 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------- 74 (253)
..+|+++|.+|+|||||+|++++. .......| +.+.....+.+... +.++||||......+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence 358999999999999999999875 22212112 23333334444332 789999996432211
Q ss_pred chhhh--cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 75 TTSYY--RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 75 ~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
...++ +..+.++++++......+..+.. +......+.|+++++||.|..
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTV 287 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCE
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccc
Confidence 11122 56788899988742211111110 111223578999999999986
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.69 E-value=1.4e-08 Score=85.67 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=71.9
Q ss_pred CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceee
Q psy9621 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGI 146 (253)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (253)
.++.|......+.+.++++++|+|++++.+ .|...+.+.. .+.|+++|+||+|+.....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~~--------------- 115 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRSV--------------- 115 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTTC---------------
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCcc---------------
Confidence 477888888888899999999999999873 3444444444 4789999999999962100
Q ss_pred EEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621 147 MLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATAI 221 (253)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~ 221 (253)
... ...+...++++..|. +++.+||++|.|++++++.+.+..
T Consensus 116 ----------------------------~~~-----~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 116 ----------------------------KYP-----KLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp ----------------------------CHH-----HHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred ----------------------------CHH-----HHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 000 111223334556665 789999999999999999987654
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.69 E-value=1.3e-09 Score=91.91 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=63.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCC-----CcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc----chh--
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFN-----TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI----TTS-- 77 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----~~~-- 77 (253)
..+|+++|.+|+|||||+|++++.... ....+..+.+.....+.+... +.++||||......+ ...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 358999999999999999999875211 111222233333333443332 889999997432211 111
Q ss_pred --h--hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 78 --Y--YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 78 --~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
+ ....+..+++++......+..+.. +......+.|+++++||.|..
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTI 286 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCE
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccc
Confidence 1 256777888887632210111100 111223578999999999986
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.66 E-value=1.5e-07 Score=80.15 Aligned_cols=64 Identities=27% Similarity=0.500 Sum_probs=36.3
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccC--ccceeeEEEEEeeC--CeEEEEEEEeCCCcc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFIS--TIGIDFKIKTVDLK--GKKIKLQIWDTAGQE 69 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~ 69 (253)
....++++|+|++|+|||||++.+.+..+...... ..+.......+.+. +-...+.++|++|..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 34457899999999999999999987643221110 11111111112222 223468999999864
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.62 E-value=9.4e-07 Score=75.27 Aligned_cols=112 Identities=12% Similarity=0.137 Sum_probs=57.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCcc-ceee--EEEEEeeCCeEEEEEEEeCCCcccccccchh-----hhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTI-GIDF--KIKTVDLKGKKIKLQIWDTAGQERFHTITTS-----YYR 80 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-----~~~ 80 (253)
...++|+|++|+|||||++.+.+-..+..-.-.. +.+. .....+.. ....+.+||++|.......... -+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 4589999999999999999998743222111111 1000 00111111 1124789999985421111111 223
Q ss_pred CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
..+..++ ++..... ..-......+.. .+.|+++|.||.|+.
T Consensus 148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~---~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 148 EYDFFII-ISATRFK--KNDIDIAKAISM---MKKEFYFVRTKVDSD 188 (413)
T ss_dssp GCSEEEE-EESSCCC--HHHHHHHHHHHH---TTCEEEEEECCHHHH
T ss_pred ccCCeEE-eCCCCcc--HHHHHHHHHHHh---cCCCeEEEEecCccc
Confidence 4455554 6765211 111122222222 368999999999975
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.61 E-value=5.4e-08 Score=79.01 Aligned_cols=123 Identities=14% Similarity=0.081 Sum_probs=76.5
Q ss_pred EeCCCcc-cccccchhhhcCccEEEEEEeCCChhhHH--HHHHHHHHHHHhcccccceeEEeeeeccccccccccccccc
Q psy9621 63 WDTAGQE-RFHTITTSYYRGAMGIMLVYDITNEKSFD--NILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSY 139 (253)
Q Consensus 63 ~Dt~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 139 (253)
-..|||. .........+..+|+++.|+|+.++.+.. .+.+++ .+.|.++++||+|+.
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~------------ 63 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKA------------ 63 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGS------------
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccC------------
Confidence 3568875 33445566789999999999999987654 233332 578999999999996
Q ss_pred cccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621 140 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT 219 (253)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 219 (253)
+ .. . .+...++.+..+++++++||+++.|++++++.+.+
T Consensus 64 ----------------------------------~-~~-----~-~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~ 102 (282)
T 1puj_A 64 ----------------------------------D-AA-----V-TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKE 102 (282)
T ss_dssp ----------------------------------C-HH-----H-HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHH
T ss_pred ----------------------------------C-HH-----H-HHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHH
Confidence 1 10 0 01112233345688999999999999999998887
Q ss_pred HHHhccC---CCCCCCCCCeEeecCCCCCC
Q psy9621 220 AIYDKTS---GRDPLEAPDRVTIDKKPDRG 246 (253)
Q Consensus 220 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 246 (253)
.+..+.. .......+.++-+-..++.+
T Consensus 103 ~l~~~~~~~~~~~~~~~~~~v~~vG~~nvG 132 (282)
T 1puj_A 103 ILQEKFDRMRAKGVKPRAIRALIIGIPNVG 132 (282)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEEEEESTTSS
T ss_pred HHHHHHHHHHhcCCCCCCceEEEEecCCCc
Confidence 7754321 01111223455555555555
No 221
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.50 E-value=1.9e-07 Score=80.04 Aligned_cols=113 Identities=23% Similarity=0.216 Sum_probs=62.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc------CCCC----CcccC-----------ccceeeEEEEE--e-----------eC
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD------DAFN----TTFIS-----------TIGIDFKIKTV--D-----------LK 54 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~------~~~~----~~~~~-----------~~~~~~~~~~~--~-----------~~ 54 (253)
...|+++|++||||||++.+|.. .+.. ..+++ ..+++...... . ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999988852 1110 01111 11222111000 0 00
Q ss_pred CeEEEEEEEeCCCcccccc-cch-----hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 55 GKKIKLQIWDTAGQERFHT-ITT-----SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 55 ~~~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
...+.+.++||+|...... +.. .....+|.+++|+|++........ ...+.. .-.+..+|+||.|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~---~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKE---ATPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHH---SCTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHh---hCCCeEEEEECCCCc
Confidence 0125789999999754321 111 123457899999998865432222 222222 223556889999986
No 222
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.49 E-value=4.6e-08 Score=78.59 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 70 (253)
++++++|.+|+|||||+|++.+...... .++.|.+.....+.+. ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 6999999999999999999997655322 2333433332223222 2589999999653
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.47 E-value=1.2e-07 Score=76.91 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=35.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (253)
...++|+++|.||||||||+|++.+...... .+..+.+.....+.+. ..+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVG---KELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEET---TTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeC---CCEEEEECcCcC
Confidence 4568999999999999999999997653322 1222333222222222 248899999974
No 224
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.43 E-value=7.1e-07 Score=71.95 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=60.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcCCCCCcc---------cCccceeeEEEEEeeCCe--EEEEEEEeCCCcccccc----
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTF---------ISTIGIDFKIKTVDLKGK--KIKLQIWDTAGQERFHT---- 73 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~---- 73 (253)
.++++++|++|+|||||++.+.+...+... ..+.. .......+... ...+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~--~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE--IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS--CCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee--eeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 579999999999999999999853322110 01100 01111112211 23678999998532110
Q ss_pred --cch----------------------hhhcCccEEEEEEeCC-ChhhHHHHHHHHHHHHHhcccccceeEEeeeecccc
Q psy9621 74 --ITT----------------------SYYRGAMGIMLVYDIT-NEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128 (253)
Q Consensus 74 --~~~----------------------~~~~~~d~~ilv~d~~-~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~ 128 (253)
... .....+++.++++|.. .+-+-.. ...+..+ ... .++++|.+|.|...
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L---~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL---SKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH---HTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH---Hhc-CcEEEEEeccccCC
Confidence 000 0112357788888854 2222111 2222233 223 89999999999874
Q ss_pred c
Q psy9621 129 Q 129 (253)
Q Consensus 129 ~ 129 (253)
+
T Consensus 155 ~ 155 (270)
T 3sop_A 155 L 155 (270)
T ss_dssp H
T ss_pred H
Confidence 4
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.36 E-value=2.1e-07 Score=79.86 Aligned_cols=64 Identities=25% Similarity=0.197 Sum_probs=38.7
Q ss_pred EEEEEEEeCCCcccccc-cch-----hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccc-c-eeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQERFHT-ITT-----SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDV-E-KMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-~iiv~nK~D~~ 127 (253)
...+.++||||...... +.. .....+|.+++|+|.+.... .......+ . ..+ | ..+|.||.|..
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~-~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---K-EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---H-TTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---h-hcccCCeEEEEeCCCCc
Confidence 45689999999764311 111 11236899999999875532 11122222 1 235 5 88999999975
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.34 E-value=1.3e-07 Score=80.95 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=61.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc------CCCC----CcccC-----------ccceeeEEEE------------E-eeC
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD------DAFN----TTFIS-----------TIGIDFKIKT------------V-DLK 54 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~------~~~~----~~~~~-----------~~~~~~~~~~------------~-~~~ 54 (253)
...|+++|++||||||++..|.. .+.. ..+++ ..++...... + ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 46789999999999999988852 1110 00010 1122111000 0 001
Q ss_pred CeEEEEEEEeCCCccc--cc-ccc---hh--hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecc
Q psy9621 55 GKKIKLQIWDTAGQER--FH-TIT---TS--YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126 (253)
Q Consensus 55 ~~~~~~~l~Dt~G~~~--~~-~~~---~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~ 126 (253)
.....+.++||||... .. .+. .. ....++.+++|+|......... ....+... -.+..+|.||.|.
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDG 250 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccc
Confidence 1245688999999754 11 111 11 1225689999999876543222 22233222 2467889999997
Q ss_pred c
Q psy9621 127 A 127 (253)
Q Consensus 127 ~ 127 (253)
.
T Consensus 251 ~ 251 (433)
T 3kl4_A 251 T 251 (433)
T ss_dssp C
T ss_pred c
Confidence 5
No 227
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.26 E-value=2.1e-06 Score=70.16 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=39.0
Q ss_pred EEEEEEEeCCCccc--ccc-cch-----hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQER--FHT-ITT-----SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~--~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
.+.+.++||||... ... +.. .....+|.+++|+|.+.... .......+.. ..| ..+|.||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 35689999999876 211 211 13457899999999864322 1122222222 356 67889999975
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.10 E-value=3.9e-06 Score=74.51 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=39.8
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEE--ee-CCeEEEEEEEeCCCccc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTV--DL-KGKKIKLQIWDTAGQER 70 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~Dt~G~~~ 70 (253)
....++|+|+|.+|||||||+|+|++.... .....+.+.+.....+ .+ ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 345789999999999999999999986532 1111111111111111 11 12335689999999754
No 229
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.03 E-value=1.4e-05 Score=66.08 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..--++++|++||||||++..+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998863
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.95 E-value=4.1e-06 Score=67.14 Aligned_cols=55 Identities=16% Similarity=0.065 Sum_probs=35.9
Q ss_pred CCCcccc-cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 65 TAGQERF-HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 65 t~G~~~~-~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.|||... .......+..+|++|.|+|+.++.+..... +. + . +.|.++++||+|+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~ 59 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIA 59 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGS
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCC
Confidence 4666432 334566788999999999999887654211 11 1 1 68999999999996
No 231
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.94 E-value=7.6e-08 Score=83.80 Aligned_cols=118 Identities=11% Similarity=0.095 Sum_probs=66.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc--cccc--------h
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF--HTIT--------T 76 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~--------~ 76 (253)
...++|+++|.+|+||||+.++|...... ...++.+++.........+......+||..|.+.+ ...+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999998753211 11122211110000111112233467898887322 2222 4
Q ss_pred hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccc--------ccceeEEeeeecc
Q psy9621 77 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE--------DVEKMILGKTKDT 126 (253)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--------~~p~iiv~nK~D~ 126 (253)
.++....+.++|+|.++. +.+....|+..+...... +.|.++..|+.|.
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~ 172 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV 172 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHh
Confidence 456667888999999987 466666676665543211 3344555666654
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.88 E-value=2.5e-05 Score=70.09 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDA 33 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~ 33 (253)
.|+|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998754
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.84 E-value=1.8e-05 Score=64.70 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=37.8
Q ss_pred cccchhhhcCccEEEEEEeCCChhh-HHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 72 HTITTSYYRGAMGIMLVYDITNEKS-FDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
..+.+..+.++|.+++|+|+.+|.. ...+.+++.... ..++|.+||+||+|+.
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~ 130 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLI 130 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGC
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccC
Confidence 3344557889999999999987754 333444443332 2578999999999997
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.49 E-value=0.00046 Score=57.52 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=31.0
Q ss_pred hhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 78 YYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
...++|.+++|... +|. +...+.+++..... .++|.+||+||+|+.
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~ 173 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLL 173 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGC
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCC
Confidence 35788999988765 454 33344454443332 468889999999997
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.47 E-value=0.00055 Score=58.72 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=38.4
Q ss_pred EEEEEEEeCCCcccccc-cch-----hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQERFHT-ITT-----SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
.+.+.++||||...... +.. .....++.+++|+|........ .....+. ..++ .-+|.||.|..
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~----~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFN----EALPLTGVVLTKVDGD 253 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHH----HHSCCCCEEEECTTSS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHh----ccCCCeEEEEecCCCC
Confidence 45689999999755422 211 1244788999999987543221 2222222 2345 35788999975
No 236
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.39 E-value=0.00093 Score=54.57 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~ 30 (253)
--|+++|++|+||||++..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 468899999999999998875
No 237
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.37 E-value=0.00066 Score=57.95 Aligned_cols=64 Identities=23% Similarity=0.254 Sum_probs=36.3
Q ss_pred EEEEEEEeCCCcccccc-cch-----hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQERFHT-ITT-----SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~ 127 (253)
.+.+.++||||...... +.. .....++.+++|+|...... .......+.. .++ .-+|.||.|..
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~----~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDE----KVGVTGLVLTKLDGD 250 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHH----HTCCCEEEEESGGGC
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHh----cCCceEEEEeCcCCc
Confidence 35689999999754321 111 11235888899999864322 2222222222 233 56788999964
No 238
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.30 E-value=0.00042 Score=59.48 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.+..-|.|+|.+++|||||+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 4566789999999999999999985
No 239
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.30 E-value=0.00012 Score=55.09 Aligned_cols=22 Identities=32% Similarity=0.755 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.+++++|++|+|||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998875
No 240
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.23 E-value=0.0014 Score=53.33 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHHHHHhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~ 30 (253)
-.++++|++|+||||++..+.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la 119 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLA 119 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 367888999999999998874
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.21 E-value=0.00021 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
--.|+++|++|||||||++.+.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346999999999999999998764
No 242
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.14 E-value=0.0002 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-++|+|++|||||||++.+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998763
No 243
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.13 E-value=0.00043 Score=53.29 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=48.0
Q ss_pred EEEEEEEeCCCc-ccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQ-ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~ 127 (253)
.+.+.++|+|+. .. ......+..+|.+|++...+ ..++..+...++.+.... +.++.++.|+.|..
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCc
Confidence 456889999986 32 23445678899999998854 666777777777766533 56788999999864
No 244
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.10 E-value=0.00019 Score=58.71 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-.++|+|++|||||||+|.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 37899999999999999999864
No 245
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.08 E-value=0.00025 Score=54.17 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++|+|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 246
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.00 E-value=0.00048 Score=51.17 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=21.9
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
|.+.... --.|+++|++||||||+.+.+..
T Consensus 1 m~~~~~~-g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHD-HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTT-SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCC-CcEEEEEcCCCCCHHHHHHHHHH
Confidence 4444333 34699999999999999998864
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.97 E-value=0.00036 Score=51.94 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHhh
Q psy9621 11 KLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~ 30 (253)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999755
No 248
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.95 E-value=0.00037 Score=52.55 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~ 32 (253)
++|+|++|||||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999998753
No 249
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.94 E-value=0.00039 Score=53.00 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999998763
No 250
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.92 E-value=0.00043 Score=52.78 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.--|+|+|++|||||||+++|...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999853
No 251
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.90 E-value=0.00044 Score=53.70 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-++|+|++|||||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999998764
No 252
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.89 E-value=0.00045 Score=53.01 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-++|+|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998763
No 253
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.87 E-value=0.00053 Score=51.80 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~ 32 (253)
|+|+||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.84 E-value=0.00051 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++|+|++|+|||||++.+.+-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998863
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.83 E-value=0.00055 Score=52.62 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-|+|+|++|||||||++.|...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.79 E-value=0.00073 Score=51.86 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.....|+|+|++|+|||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
No 257
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.75 E-value=0.0007 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDA 33 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~ 33 (253)
-++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999987644
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.75 E-value=0.00072 Score=53.10 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++++|+.|||||||++.+.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999998875
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.72 E-value=0.00083 Score=49.54 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRF 29 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l 29 (253)
+.|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 260
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.71 E-value=0.00081 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.-|+|+|++|||||||.++|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998753
No 261
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.70 E-value=0.00084 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+++|++|||||||.+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998875
No 262
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.68 E-value=0.00085 Score=52.27 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++++|+.|+|||||++.+.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998875
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.68 E-value=0.00093 Score=49.26 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 264
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.67 E-value=0.0009 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 265
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.66 E-value=0.00098 Score=52.55 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~ 30 (253)
..|+|+|++|||||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999987
No 266
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.66 E-value=0.00093 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 267
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.65 E-value=0.00091 Score=55.77 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCCC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDAF 34 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~~ 34 (253)
.++|+|++|||||||++.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999987543
No 268
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.65 E-value=0.00091 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++++|++|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999874
No 269
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.65 E-value=0.00087 Score=51.06 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
..|+|+|++|||||||++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998764
No 270
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.65 E-value=0.00084 Score=50.85 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
+++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999998875
No 271
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.64 E-value=0.00097 Score=52.53 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988763
No 272
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.64 E-value=0.001 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
++|+|+|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.61 E-value=0.0012 Score=48.96 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+|.|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 274
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.61 E-value=0.0012 Score=50.66 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
....|+++|++|||||||++.+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998875
No 275
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.61 E-value=0.0011 Score=51.30 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988763
No 276
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.60 E-value=0.0029 Score=45.37 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 347999999999999999888753
No 277
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.60 E-value=0.0011 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-++++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988763
No 278
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.59 E-value=0.001 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-.|+|+|++|||||||++.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 279
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.59 E-value=0.0011 Score=53.34 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++++|+.|||||||++.+.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998875
No 280
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.56 E-value=0.00099 Score=49.75 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-.++++|++|+|||||++.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.56 E-value=0.0011 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988763
No 282
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.56 E-value=0.0013 Score=51.76 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988753
No 283
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.55 E-value=0.0012 Score=52.87 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988763
No 284
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.55 E-value=0.0013 Score=51.85 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988753
No 285
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.55 E-value=0.0011 Score=52.89 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++|+|++|+|||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 689999999999999998875
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.53 E-value=0.0013 Score=49.94 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-.|+++|++||||||+...+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999998874
No 287
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.52 E-value=0.0013 Score=49.86 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998874
No 288
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.52 E-value=0.0014 Score=51.18 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988763
No 289
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.52 E-value=0.0014 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988763
No 290
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.51 E-value=0.00099 Score=51.26 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.51 E-value=0.0015 Score=49.02 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998875
No 292
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.51 E-value=0.0013 Score=50.12 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998876
No 293
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.51 E-value=0.0013 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999988753
No 294
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.51 E-value=0.0013 Score=52.03 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999988763
No 295
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.50 E-value=0.0013 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988763
No 296
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.49 E-value=0.0014 Score=48.71 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.|+|.|++||||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 297
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.49 E-value=0.0014 Score=52.16 Aligned_cols=22 Identities=41% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988763
No 298
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.48 E-value=0.0014 Score=50.45 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 299
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.47 E-value=0.0014 Score=53.47 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++|+|++|+|||||++.+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999998875
No 300
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.46 E-value=0.0016 Score=51.94 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999988763
No 301
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.45 E-value=0.0015 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988863
No 302
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.45 E-value=0.0015 Score=51.32 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHhh
Q psy9621 11 KLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~ 30 (253)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999876
No 303
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.45 E-value=0.0018 Score=48.43 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...|+|.|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 304
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.45 E-value=0.0016 Score=48.59 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-++|+|++|+|||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3589999999999999999985
No 305
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.43 E-value=0.0019 Score=49.27 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 306
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.43 E-value=0.0015 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+|.|.+|||||||.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 307
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.43 E-value=0.0017 Score=52.31 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5799999999999999988753
No 308
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.42 E-value=0.0015 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++|+|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999988763
No 309
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.42 E-value=0.0016 Score=52.12 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988863
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.42 E-value=0.0017 Score=48.68 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 311
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.42 E-value=0.0017 Score=48.51 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.+|+++|++||||||+...+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 312
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.41 E-value=0.0016 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988763
No 313
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.41 E-value=0.0019 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDA 33 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~ 33 (253)
.++++|++|+|||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998643
No 314
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.40 E-value=0.0016 Score=53.15 Aligned_cols=20 Identities=45% Similarity=0.740 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHhh
Q psy9621 11 KLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~ 30 (253)
.++++|++|||||||++.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999998
No 315
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.39 E-value=0.0018 Score=50.16 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.+|+++|++||||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 316
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.37 E-value=0.0011 Score=51.72 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=14.8
Q ss_pred EEEEEcCCCCcHHHHHHHhh-cC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFS-DD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~-~~ 32 (253)
-++|+|++|||||||++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999988 53
No 317
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.37 E-value=0.0017 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999988753
No 318
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.35 E-value=0.0021 Score=48.27 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 319
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.34 E-value=0.002 Score=47.96 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...|++.|++|+||||+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34699999999999999998864
No 320
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.34 E-value=0.0017 Score=50.26 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++|+|++|+|||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 321
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.33 E-value=0.0021 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 322
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.33 E-value=0.0019 Score=49.19 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
--.|+|+|++|+|||||.+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988865
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.33 E-value=0.0024 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=21.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...+.|+|.|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998864
No 324
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.32 E-value=0.0022 Score=51.24 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHhhcCC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDDA 33 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~~ 33 (253)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999887643
No 325
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.31 E-value=0.0011 Score=49.40 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++|+|++|+|||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 326
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.30 E-value=0.0022 Score=47.05 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998865
No 327
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.27 E-value=0.0019 Score=52.86 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.0
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.....-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34556899999999999999998875
No 328
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.27 E-value=0.0022 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
+.|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.27 E-value=0.0027 Score=47.65 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..+|+++|++||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 330
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.26 E-value=0.0021 Score=47.72 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
+|+|+|++||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 331
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.25 E-value=0.0027 Score=50.00 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..++|+|.|++||||||+.++|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 332
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.25 E-value=0.0023 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+|.|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.25 E-value=0.002 Score=53.96 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-+++|+|++|+|||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 334
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.23 E-value=0.0027 Score=48.39 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 335
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.23 E-value=0.0017 Score=52.94 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++|+|++|+|||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 689999999999999988775
No 336
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.21 E-value=0.003 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
....-|+|.|++|||||||..++..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999874
No 337
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.21 E-value=0.0017 Score=47.05 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++++|++|+|||+|++.+.+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998875
No 338
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.21 E-value=0.0028 Score=47.16 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-.+++.|++|+|||+|++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 339
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.21 E-value=0.0036 Score=47.82 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 340
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.19 E-value=0.003 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 341
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.19 E-value=0.0039 Score=48.24 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHhhc
Q psy9621 12 LLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~ 31 (253)
|+|+|+|||||+|...+|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988864
No 342
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.19 E-value=0.0023 Score=51.43 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHhhc
Q psy9621 12 LLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~ 31 (253)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999876
No 343
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.19 E-value=0.0032 Score=47.65 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=22.5
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
......|+|.|.+||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 344578999999999999999988763
No 344
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.18 E-value=0.0027 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999988753
No 345
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.16 E-value=0.0025 Score=53.12 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-++++|++|+|||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999988763
No 346
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.16 E-value=0.0041 Score=47.23 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-..|+|.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998874
No 347
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.15 E-value=0.0024 Score=53.32 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++|+|++|+|||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998865
No 348
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.15 E-value=0.0023 Score=49.47 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 349
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.13 E-value=0.0037 Score=47.69 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
...|+++|++|+|||||.+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988763
No 350
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.12 E-value=0.0029 Score=48.77 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
++|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
No 351
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.12 E-value=0.0027 Score=50.18 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++++|++|+|||||++.+.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999875
No 352
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.11 E-value=0.0043 Score=46.43 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 353
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.11 E-value=0.0034 Score=46.51 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..+.++|++|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999875
No 354
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.10 E-value=0.0045 Score=46.34 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
....|+|.|.+|+||||+.+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 355
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.09 E-value=0.0032 Score=47.77 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999988763
No 356
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.08 E-value=0.0029 Score=52.65 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-++++|++|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988753
No 357
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.08 E-value=0.0028 Score=51.73 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~ 30 (253)
-.|+++|++|||||||++.+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 478999999999999999886
No 358
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.07 E-value=0.0031 Score=52.70 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++++|++|+|||||++.+.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 478999999999999988875
No 359
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.07 E-value=0.0037 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
....|+++|+.|||||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
No 360
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.06 E-value=0.0031 Score=52.10 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++|+|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998864
No 361
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.05 E-value=0.0034 Score=47.25 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.05 E-value=0.0034 Score=47.11 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 363
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.05 E-value=0.0031 Score=52.60 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++++|++|+|||||++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHC
Confidence 478999999999999998875
No 364
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.04 E-value=0.0028 Score=53.06 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++|+|++|+|||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998863
No 365
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.03 E-value=0.0033 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999988753
No 366
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.03 E-value=0.0031 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
--++++|++||||||++..+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998863
No 367
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.02 E-value=0.0032 Score=52.90 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++|+|++|+|||||++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999875
No 368
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.01 E-value=0.0034 Score=52.75 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++++|++|+|||||++.+.+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHc
Confidence 478999999999999998875
No 369
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.99 E-value=0.0037 Score=47.15 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+|.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 370
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.97 E-value=0.0036 Score=52.50 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++++|++|+|||||++.+.+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 478999999999999998875
No 371
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.97 E-value=0.0035 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999988753
No 372
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.97 E-value=0.0038 Score=48.66 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..+|+|+|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 373
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.95 E-value=0.0017 Score=49.79 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 374
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.95 E-value=0.0037 Score=49.54 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 375
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.94 E-value=0.004 Score=46.86 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 376
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.94 E-value=0.003 Score=46.84 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-.++|.|++|+|||+|++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998865
No 377
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.93 E-value=0.004 Score=46.37 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999853
No 378
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.93 E-value=0.0042 Score=49.15 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~ 30 (253)
..|+|+|++|||||||++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999887
No 379
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.92 E-value=0.0035 Score=49.61 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=21.9
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
......|+++|++||||||+.+.+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999998864
No 380
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.92 E-value=0.0049 Score=46.87 Aligned_cols=25 Identities=28% Similarity=0.134 Sum_probs=21.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
....-|+|+|++|+|||||++.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 381
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.92 E-value=0.0047 Score=51.63 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=37.0
Q ss_pred eeeccccccccccccccccccceeeEEEEeccC----------ccchhhHHHHHHhhhhh
Q psy9621 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITN----------EKSFDNILKWLRNIDEH 171 (253)
Q Consensus 122 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 171 (253)
.-.|.+|+++.+.....++....+++.+++.+. ...+.+...|...+...
T Consensus 204 ~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~ 263 (362)
T 1zcb_A 204 KMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN 263 (362)
T ss_dssp EEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred EEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc
Confidence 346999998888888888899999999999998 67899999999888765
No 382
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.90 E-value=0.0038 Score=50.08 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++++|++|+|||||++.+.+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 389999999999999999875
No 383
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.89 E-value=0.0029 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-++++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999988753
No 384
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.88 E-value=0.0037 Score=53.32 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++|+|++|+|||||++.+.+
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 385
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.88 E-value=0.0044 Score=45.64 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 386
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.88 E-value=0.0037 Score=51.61 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999875
No 387
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.87 E-value=0.0049 Score=48.97 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+|.|.+||||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 388
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.87 E-value=0.0055 Score=49.58 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.....|+|+|++|||||||++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988764
No 389
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.87 E-value=0.0057 Score=50.19 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=21.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...+-|+|+|++|||||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988754
No 390
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.87 E-value=0.0052 Score=50.17 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=21.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
....-|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998875
No 391
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.87 E-value=0.0043 Score=47.92 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 392
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.86 E-value=0.005 Score=45.22 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-+|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 393
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.85 E-value=0.0045 Score=47.31 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 394
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.83 E-value=0.02 Score=49.02 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=40.9
Q ss_pred cCceeEEEEEcCCCCcHHHHHHHhhc------------------CCCCC---cccCccceeeEEE--EEee-CCeEEEEE
Q psy9621 6 YDFLFKLLLIGDSGVGKTCVLFRFSD------------------DAFNT---TFISTIGIDFKIK--TVDL-KGKKIKLQ 61 (253)
Q Consensus 6 ~~~~~ki~vvG~~~~GKStL~~~l~~------------------~~~~~---~~~~~~~~~~~~~--~~~~-~~~~~~~~ 61 (253)
.++..=|.|+|+.++|||+|+|.++. ..|.. ...-|.|+-+-.. .+.. ++..+.+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 45667778999999999999995541 12221 1123455443221 1222 56678899
Q ss_pred EEeCCCccc
Q psy9621 62 IWDTAGQER 70 (253)
Q Consensus 62 l~Dt~G~~~ 70 (253)
++||.|...
T Consensus 144 llDTEG~~d 152 (457)
T 4ido_A 144 LMDTQGTFD 152 (457)
T ss_dssp EEEECCBTC
T ss_pred EEeccCCCC
Confidence 999999643
No 395
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.82 E-value=0.0049 Score=47.79 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 396
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.82 E-value=0.004 Score=54.51 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++|+|++|||||||++.+.+-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999998863
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.81 E-value=0.0062 Score=46.83 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 398
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.80 E-value=0.0066 Score=47.26 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
..-.-|+|.|+.|||||||++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567999999999999999988763
No 399
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.78 E-value=0.0049 Score=45.97 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.|+|.|.+||||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988864
No 400
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.77 E-value=0.0051 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-.+++.|++|+|||+|++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3699999999999999999875
No 401
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.77 E-value=0.0038 Score=46.47 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=15.6
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.76 E-value=0.0058 Score=45.43 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-..|++.|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999988865
No 403
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.76 E-value=0.0048 Score=52.08 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++++|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 589999999999999998875
No 404
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.76 E-value=0.0053 Score=46.53 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 405
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.72 E-value=0.0049 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
--++++|++||||||++..+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4689999999999999998863
No 406
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.71 E-value=0.0065 Score=47.98 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 407
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.71 E-value=0.006 Score=44.14 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHhh
Q psy9621 12 LLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~ 30 (253)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999975
No 408
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.69 E-value=0.003 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-++++|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988753
No 409
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.68 E-value=0.0051 Score=48.66 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-+|+++|++|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988864
No 410
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.63 E-value=0.0046 Score=47.23 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988764
No 411
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.63 E-value=0.0059 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
+++++|++|+|||||++.+.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988864
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.59 E-value=0.0057 Score=53.05 Aligned_cols=21 Identities=38% Similarity=0.759 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~ 30 (253)
--++|+|++|||||||+..|.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHH
Confidence 468999999999999999875
No 413
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.59 E-value=0.0069 Score=47.33 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.+.|++.|++|+||||+.+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998863
No 414
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.57 E-value=0.0058 Score=49.42 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++|+|++|+|||||+..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 415
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.56 E-value=0.0067 Score=47.29 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-.-|+|.|++||||||+++++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 416
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.54 E-value=0.0069 Score=46.39 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 417
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.53 E-value=0.0068 Score=46.42 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...|+|.|.+|+||||+.+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998764
No 418
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.53 E-value=0.007 Score=47.13 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++|+|++|+|||||+..+..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999886
No 419
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.53 E-value=0.0068 Score=43.51 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
....|++.|++|+|||++.+.+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999988753
No 420
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.53 E-value=0.0052 Score=50.44 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
--++|+|..|||||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35789999999999999999864
No 421
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.006 Score=52.69 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++|+|+.|+|||||++.+.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998875
No 422
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.46 E-value=0.11 Score=39.08 Aligned_cols=67 Identities=16% Similarity=0.036 Sum_probs=47.6
Q ss_pred EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhc--ccccceeEEeeeeccc
Q psy9621 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA--NEDVEKMILGKTKDTA 127 (253)
Q Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~ 127 (253)
.+.+.++|+|+.. .......+..+|.+|++...+.. + ..+...++.+.... ..+.++.+|.|+.|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 3568999999865 33445667789999999986544 4 66666666665543 3457789999999853
No 423
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.45 E-value=0.0071 Score=46.64 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 424
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.42 E-value=0.0081 Score=45.72 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.+++.|++|+|||+|++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998875
No 425
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.37 E-value=0.011 Score=44.67 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...+.|.+.|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998875
No 426
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.36 E-value=0.0086 Score=47.96 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-.+++.|++|+|||+|++.+..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 44699999999999999999875
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.36 E-value=0.0082 Score=48.57 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+|.|.+||||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 428
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.33 E-value=0.0095 Score=46.97 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...+++.|++|+|||+|++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 429
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.29 E-value=0.014 Score=46.85 Aligned_cols=23 Identities=43% Similarity=0.488 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhh
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~ 30 (253)
..+.|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999887
No 430
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.29 E-value=0.0094 Score=48.10 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-.+++.|++|+|||+|++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 431
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.28 E-value=0.0089 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
+++++|++|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999988764
No 432
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.24 E-value=0.013 Score=47.44 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-+++.|+||+|||+|.+.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4677889999999999998875
No 433
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.23 E-value=0.0088 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999998875
No 434
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.23 E-value=0.012 Score=47.68 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=20.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.....+++.|++|+|||+|.+.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999986653
No 435
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.16 E-value=0.01 Score=49.62 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHhh
Q psy9621 12 LLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~ 30 (253)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999999976
No 436
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.14 E-value=0.011 Score=52.74 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999988753
No 437
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.14 E-value=0.01 Score=48.21 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-.|++.|++|+|||+|++.+..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999999875
No 438
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.14 E-value=0.0098 Score=51.55 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHhh
Q psy9621 11 KLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~ 30 (253)
-++|+|+.|+|||||++.+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHh
Confidence 57899999999999999885
No 439
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.13 E-value=0.015 Score=47.16 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-.+++.|++|+|||++.+.+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHH
Confidence 45799999999999999998875
No 440
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.13 E-value=0.015 Score=51.36 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988763
No 441
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.12 E-value=0.0099 Score=48.69 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-.+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998875
No 442
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.11 E-value=0.012 Score=44.59 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
..|+|+|++|+|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 443
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.10 E-value=0.012 Score=45.71 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=20.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...+++.|+|+|||||||+..+|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3468999999999999999998864
No 444
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.08 E-value=0.011 Score=47.32 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998874
No 445
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.06 E-value=0.012 Score=45.88 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877753
No 446
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.05 E-value=0.014 Score=51.36 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-++++|+.|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988764
No 447
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.02 E-value=0.017 Score=47.60 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
-|+|+|++|||||||...|..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 448
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.00 E-value=0.018 Score=45.89 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.....+++.|++|+|||+|...+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999999875
No 449
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.00 E-value=0.012 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988763
No 450
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.97 E-value=0.011 Score=49.11 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999875
No 451
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.94 E-value=0.013 Score=47.35 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-.+++.|++|+|||+|++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998875
No 452
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.016 Score=51.75 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999988753
No 453
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.91 E-value=0.014 Score=47.32 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhh
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~ 30 (253)
-.++|+|++|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999998875
No 454
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.89 E-value=0.019 Score=47.65 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=20.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHhh
Q psy9621 7 DFLFKLLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 7 ~~~~ki~vvG~~~~GKStL~~~l~ 30 (253)
....+|+++|++|+||||+...+.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHH
Confidence 345689999999999999997664
No 455
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.88 E-value=0.014 Score=48.76 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 456
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.87 E-value=0.011 Score=52.75 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988753
No 457
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.84 E-value=0.012 Score=52.54 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++++|++|+|||||++.+.+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 789999999999999988875
No 458
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.82 E-value=0.012 Score=48.69 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
++++.|++|+|||||++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998865
No 459
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.82 E-value=0.017 Score=44.97 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
....|+|+|.+|+||||+.+.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999988864
No 460
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.81 E-value=0.016 Score=44.17 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHhh
Q psy9621 12 LLLIGDSGVGKTCVLFRFS 30 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~ 30 (253)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4788999999999999874
No 461
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.80 E-value=0.011 Score=52.73 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999987765
No 462
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.76 E-value=0.021 Score=48.29 Aligned_cols=106 Identities=14% Similarity=0.054 Sum_probs=76.5
Q ss_pred eeeeccccccccccccccccccceeeEEEEeccC----------ccchhhHHHHHHhhhhhcC--CCchhh--------h
Q psy9621 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN----------EKSFDNILKWLRNIDEHAN--EDPQVV--------N 180 (253)
Q Consensus 121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~--------~ 180 (253)
..-.|.+|++....+...++..+.+++++++++. ..+|++...|..++..... ..+..+ .
T Consensus 219 l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 219 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 298 (402)
T ss_dssp EEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHH
T ss_pred ceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhh
Confidence 3446999999998888899999999999999999 8999999999998876521 111100 0
Q ss_pred hh----c---------------------------cchhHHHHH-----HH--------hCCceEEeeccCCCCHHHHHHH
Q psy9621 181 SW----V---------------------------CKHRGEAIA-----RE--------YGVRFMETSAKANINIEKAFIE 216 (253)
Q Consensus 181 ~~----~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~gi~~l~~~ 216 (253)
.. + ..+++..++ +. .++.+++|||+++.||+.+|..
T Consensus 299 ~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~ 378 (402)
T 1azs_C 299 EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND 378 (402)
T ss_dssp HHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHH
T ss_pred hhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHH
Confidence 00 0 012333442 22 2466789999999999999999
Q ss_pred HHHHHHhccC
Q psy9621 217 LATAIYDKTS 226 (253)
Q Consensus 217 l~~~~~~~~~ 226 (253)
+...+....+
T Consensus 379 v~~~I~~~~l 388 (402)
T 1azs_C 379 CRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988876654
No 463
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.76 E-value=0.016 Score=47.48 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...|++.|++|+|||+|++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999999875
No 464
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.75 E-value=0.13 Score=41.80 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.1
Q ss_pred EEEEcCCCCcHHHHHHHhhc
Q psy9621 12 LLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~ 31 (253)
+++-|++|+|||++++.+..
T Consensus 51 ~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHH
Confidence 34456699999999999875
No 465
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.75 E-value=0.017 Score=47.15 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988865
No 466
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.75 E-value=0.021 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999988753
No 467
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.73 E-value=0.017 Score=47.27 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..|+|+|++|||||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 468
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.72 E-value=0.024 Score=48.30 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..-|+|+|++||||||+.+++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999875
No 469
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.71 E-value=0.017 Score=47.44 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-.|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 47999999999999999998763
No 470
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.016 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
--|++.|+||+|||+|..++.+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999875
No 471
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.70 E-value=0.016 Score=48.20 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998863
No 472
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.70 E-value=0.015 Score=48.02 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
+++|.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 473
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.70 E-value=0.016 Score=50.23 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-+++++|+||+|||+|++.+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998764
No 474
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.68 E-value=0.019 Score=43.49 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.|.+.|.+||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 475
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.66 E-value=0.014 Score=52.01 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999988765
No 476
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.63 E-value=0.024 Score=50.01 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++|+|+.|+|||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988864
No 477
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.017 Score=49.38 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-.|++.||||+|||+|.+++.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 478
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.60 E-value=0.022 Score=50.14 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 479
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.59 E-value=0.025 Score=46.04 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-|+|+|++|||||+|..++..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 3578999999999999999874
No 480
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.56 E-value=0.017 Score=45.83 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-..|+|.|..||||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988875
No 481
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.53 E-value=0.019 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-.++|.|++|+|||+|++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 482
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.53 E-value=0.026 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
.++++|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988864
No 483
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.51 E-value=0.016 Score=48.35 Aligned_cols=24 Identities=33% Similarity=0.231 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..-.++|.|++|+|||+|++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999998875
No 484
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.019 Score=49.15 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.--|++.|+||+|||+|.+++.+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999875
No 485
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.49 E-value=0.018 Score=47.46 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.+++.|++|+|||++++.+..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 486
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.47 E-value=0.0088 Score=47.47 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999875
No 487
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.47 E-value=0.02 Score=46.63 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-|+|+|++|||||||..++...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999998753
No 488
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.46 E-value=0.02 Score=47.28 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-|+|.|++|||||||..+|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988864
No 489
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.39 E-value=0.014 Score=47.91 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHhhc
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~ 31 (253)
.+++.|++|+|||+|++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 799999999999999998865
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.022 Score=50.99 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q psy9621 12 LLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 12 i~vvG~~~~GKStL~~~l~~~ 32 (253)
++++|+.|+|||||++.+.+-
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 799999999999999988764
No 491
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.32 E-value=0.023 Score=46.63 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHhhcC
Q psy9621 11 KLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l~~~ 32 (253)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 492
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.31 E-value=0.022 Score=48.13 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
.-.|++.|+||+|||+|.+++.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHH
Confidence 34699999999999999999875
No 493
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.30 E-value=0.041 Score=41.82 Aligned_cols=31 Identities=26% Similarity=0.165 Sum_probs=26.9
Q ss_pred CCccccCceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
|+.....+..-|+|.|.+||||+++...+..
T Consensus 3 ~~~~~~~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 3 MAPLGGAPRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCTTBCCCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccccCCCEEEEEECCCCCChHHHHHHHHH
Confidence 6777777888999999999999999987764
No 494
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.018 Score=47.12 Aligned_cols=24 Identities=8% Similarity=-0.080 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..-.+++.|+||+|||++++.+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998874
No 495
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.29 E-value=0.023 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSDD 32 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~~ 32 (253)
...|++.|++|+|||+|.+.+...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh
Confidence 357999999999999999998754
No 496
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.28 E-value=0.023 Score=46.62 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 8 FLFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 8 ~~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
..-.|++.|++|+|||+|++.+..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 344799999999999999999865
No 497
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.27 E-value=0.022 Score=50.11 Aligned_cols=19 Identities=42% Similarity=0.641 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHh
Q psy9621 11 KLLLIGDSGVGKTCVLFRF 29 (253)
Q Consensus 11 ki~vvG~~~~GKStL~~~l 29 (253)
-++|+|++|+|||||++.|
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4799999999999999985
No 498
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.26 E-value=0.021 Score=47.78 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...+++.|++|+|||+|.+.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 499
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.23 E-value=0.025 Score=47.07 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621 9 LFKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 9 ~~ki~vvG~~~~GKStL~~~l~~ 31 (253)
...|+|.|++|+|||+|++.+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 500
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.23 E-value=0.023 Score=47.27 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHhhc
Q psy9621 10 FKLLLIGDSGVGKTCVLFRFSD 31 (253)
Q Consensus 10 ~ki~vvG~~~~GKStL~~~l~~ 31 (253)
-.|+|.|++|+|||+|++.+..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3699999999999999998875
Done!