RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9621
(253 letters)
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 285 bits (732), Expect = 1e-98
Identities = 97/254 (38%), Positives = 135/254 (53%), Gaps = 55/254 (21%)
Query: 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
YD+LFKLLLIG+SGVGK+C+L RFSDD + +ISTIG+DFKIKTV+L GK +KLQIW
Sbjct: 3 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
DTAGQERF TIT+SYYRG+ GI++VYD+T+++SF+ + WL+ ID +A V K+++G
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 122
Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
D LK R ++
Sbjct: 123 CD------------------------------------LKDKRVVE-------------- 132
Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS----GRDPLEAPDRVTI 239
+ A + F+ETSA + N+E AF+ +A I + S + D+ +
Sbjct: 133 -YDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNV 191
Query: 240 DKKPDRGGMAGGCC 253
+ K GGCC
Sbjct: 192 NLKGQSLTNTGGCC 205
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 280 bits (719), Expect = 8e-97
Identities = 74/224 (33%), Positives = 110/224 (49%), Gaps = 45/224 (20%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
+ +K++L GD+ VGK+ L R + F +T+G+DF++KT+ + G++ LQ
Sbjct: 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQ 80
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
+WDTAGQERF +I SY+R A G++L+YD+T EKSF NI +W+ I++ A+E V M++G
Sbjct: 81 LWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVG 140
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
D D A E + V
Sbjct: 141 NKADIR-----------------------------------------DTAATEGQKCVP- 158
Query: 182 WVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225
H GE +A YG F ETSAK NI +A + LA + +T
Sbjct: 159 ---GHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 275 bits (705), Expect = 1e-94
Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 52/224 (23%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
+ + DF ++++IG GVGKT ++ RF+DD F ST+G+DFKIKTV+L+GKKI+LQ
Sbjct: 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAGQERF++IT++YYR A GI+LVYDIT +++FD++ KW++ ID++A+ED E +++G
Sbjct: 79 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
D + R I
Sbjct: 139 NKLD------------------------------------CETDREIT------------ 150
Query: 182 WVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIYDK 224
+ +GE A++ G+RF E SAK N N+++ F++L I K
Sbjct: 151 ---RQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 274 bits (704), Expect = 2e-94
Identities = 80/225 (35%), Positives = 120/225 (53%), Gaps = 51/225 (22%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
+ + YDFLFK++LIG++GVGKTC++ RF+ F +TIG+DF IKTV++ G+K+KLQ
Sbjct: 19 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQ 78
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAGQERF +IT SYYR A ++L YDIT E+SF + +WLR I+++A+ V +++G
Sbjct: 79 IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 138
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
D L R +
Sbjct: 139 NKID------------------------------------LAERREVS------------ 150
Query: 182 WVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
+ R E + + ++ETSAK + N+EK F++LA + +
Sbjct: 151 ---QQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 272 bits (697), Expect = 3e-93
Identities = 76/251 (30%), Positives = 118/251 (47%), Gaps = 54/251 (21%)
Query: 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
FKL+ +G+ VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WD
Sbjct: 12 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG-KT 123
TAG ERF ++ SY R + ++VYDITN SF KW+ ++ DV M++G KT
Sbjct: 72 TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131
Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
D+ +++ V
Sbjct: 132 ---------------------------DLADKRQ-------------------------V 139
Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPL-EAPDRVTIDKK 242
GE A+E V F+ETSAKA N+++ F +A A+ S +D E + ++K
Sbjct: 140 SIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKP 199
Query: 243 PDRGGMAGGCC 253
++ GGC
Sbjct: 200 QEQPVSEGGCL 210
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 271 bits (694), Expect = 5e-93
Identities = 82/223 (36%), Positives = 119/223 (53%), Gaps = 51/223 (22%)
Query: 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
+LFK ++IGD+GVGK+C+L +F+D F TIG++F + V++ GK+IKLQIW
Sbjct: 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIW 75
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
DTAGQE F +IT SYYRGA G +LVYDIT ++F+++ WL + +H++ ++ M++G
Sbjct: 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNK 135
Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
D L+ R++
Sbjct: 136 SD------------------------------------LESRRDVK-------------- 145
Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
+ GEA ARE+G+ FMETSAK N+E+AFI A IY K
Sbjct: 146 -REEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQ 187
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 269 bits (689), Expect = 4e-92
Identities = 73/236 (30%), Positives = 114/236 (48%), Gaps = 53/236 (22%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
DFLFK L+IG +G GK+C+L +F ++ F TIG++F + V++ GK +KLQ
Sbjct: 18 GSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQ 77
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAGQERF ++T SYYRGA G +LVYDIT+ ++++++ WL + A+ ++ ++ G
Sbjct: 78 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 137
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
KD L R +
Sbjct: 138 NKKD------------------------------------LDPEREVT------------ 149
Query: 182 WVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRV 237
A+E + F+ETSA N+E+AF++ A I +K + P+R+
Sbjct: 150 ---FLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGEL--DPERM 200
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 268 bits (687), Expect = 6e-92
Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 59/246 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFK++LIGDSGVGK+ +L RF+ + FN STIG++F +++ + GK IK QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQER+ IT++YYRGA+G +LVYDI +++N+ +WL+ + +HA+ ++ M++G D
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
L+ LR +
Sbjct: 122 ------------------------------------LRHLRAVP---------------T 130
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS--------GRDPLEAPDRV 237
A A + + F+ETSA + N+E+AF + T IY S D + V
Sbjct: 131 DEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVV 190
Query: 238 TIDKKP 243
I P
Sbjct: 191 DISVPP 196
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 267 bits (685), Expect = 7e-92
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 51/221 (23%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
A Y ++FK ++IGD GVGK+C+L +F++ F TIG++F + +++ G+KIKLQ
Sbjct: 8 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAGQERF +T SYYRGA G ++VYDIT +++++ WL + N + +++G
Sbjct: 68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
D L+ R++
Sbjct: 128 NKAD------------------------------------LEAQRDVT------------ 139
Query: 182 WVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
+ A E G+ F+E SAK N+E AF+E A IY
Sbjct: 140 ---YEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 266 bits (682), Expect = 3e-91
Identities = 73/223 (32%), Positives = 112/223 (50%), Gaps = 51/223 (22%)
Query: 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
+TYDFLFK L+IG++G GK+C+L +F + F TIG++F K +++ GK +KLQIW
Sbjct: 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
DTAGQERF ++T SYYRGA G +LVYDIT+ ++++ + WL + A++++ ++ G
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
KD L R +
Sbjct: 125 KD------------------------------------LDADREVT-------------- 134
Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
A+E + F+ETSA N+E+AF++ A I +K
Sbjct: 135 -FLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 176
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 263 bits (675), Expect = 2e-90
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 51/219 (23%)
Query: 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
+ + FK++L+G+ VGKT ++ R+ ++ FN I+T+G F K +++ GK++ L IWD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
TAGQERFH + YYR + G +LVYDIT+E SF + W++ + + ++ I+G
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
D L+ R++
Sbjct: 122 D------------------------------------LEKERHVS--------------- 130
Query: 185 KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223
E+ A G + TSAK N IE+ F++L + +
Sbjct: 131 IQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 264 bits (678), Expect = 2e-90
Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 57/258 (22%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
M + L K++++GDSGVGKT ++ ++ + F+ + +TIG DF K V + + + +
Sbjct: 1 MTSR-KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTM 59
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVE 116
QIWDTAGQERF ++ ++YRGA +LV+D+T +F + W A+ E+
Sbjct: 60 QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119
Query: 117 KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDP 176
++LG D E+
Sbjct: 120 FVVLGNKIDL-----------------------------------------------ENR 132
Query: 177 QVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPL-EAPD 235
QV K + + + ETSAK IN+E+AF +A + + + E P+
Sbjct: 133 QVAT----KRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPE 188
Query: 236 RVTIDKKPDRGGMAGGCC 253
+ +DK A C
Sbjct: 189 PIKLDKNERAKASAESCS 206
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 264 bits (678), Expect = 3e-90
Identities = 76/249 (30%), Positives = 120/249 (48%), Gaps = 63/249 (25%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK----- 56
YD+L KLL +GDSGVGKT L+R++D+ FN FI+T+GIDF+ K V +
Sbjct: 18 GSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGS 77
Query: 57 -----KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA 111
K+ LQ+WDTAGQERF ++TT+++R AMG +L++D+T+++SF N+ W+ + +A
Sbjct: 78 SGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 137
Query: 112 N-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE 170
E+ + +++G D L R ++E
Sbjct: 138 YCENPDIVLIGNKAD------------------------------------LPDQREVNE 161
Query: 171 HANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS-GRD 229
+ +A +YG+ + ETSA N+EKA L I + +
Sbjct: 162 ---------------RQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVE 206
Query: 230 PLEAPDRVT 238
+ PD V
Sbjct: 207 KTQIPDTVN 215
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 258 bits (661), Expect = 5e-88
Identities = 65/229 (28%), Positives = 96/229 (41%), Gaps = 51/229 (22%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
+ + + K+ L+GD+GVGK+ ++ RF D F+ TIG F KTV + K
Sbjct: 15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKF 74
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
IWDTAGQERFH++ YYRG+ ++VYDIT + SF + KW++ + EH E++ I
Sbjct: 75 LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIA 134
Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
G D L +R +
Sbjct: 135 GNKCD------------------------------------LSDIREVP----------- 147
Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD 229
+ A G +ETSAK INIE+ F ++ I +
Sbjct: 148 ----LKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 257 bits (660), Expect = 6e-88
Identities = 62/228 (27%), Positives = 97/228 (42%), Gaps = 51/228 (22%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
A KL+L+GD G GK+ ++ RF D F STIG F +T+ + +K +
Sbjct: 5 AAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFE 64
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAGQER+H++ YYRGA ++V+D+TN+ SF+ KW++ + N ++ + G
Sbjct: 65 IWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG 124
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
D L R +
Sbjct: 125 NKSD------------------------------------LLDARKVT------------ 136
Query: 182 WVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD 229
+ A+E G+ FMETSAK N+++ F E+A + +
Sbjct: 137 ---AEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTEN 181
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 257 bits (658), Expect = 3e-87
Identities = 52/247 (21%), Positives = 89/247 (36%), Gaps = 57/247 (23%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIG-IDFKIKTVDLKGKKIKL 60
+ + + +K+ LIGD GVGKT + R D F + +T+G ++ + +D +G IK
Sbjct: 4 SMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKF 63
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
+WDTAGQE+ + YY GA G +L +D+T+ + N+ +W++ + ++
Sbjct: 64 NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVC 123
Query: 121 G-KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV 179
K DI N +
Sbjct: 124 ANKI---------------------------DIKNRQK---------------------- 134
Query: 180 NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAPDR 236
+ K + + + E SAK N F+ LA + + P
Sbjct: 135 ---ISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTE 191
Query: 237 VTIDKKP 243
V D
Sbjct: 192 VNYDYHS 198
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 248 bits (637), Expect = 1e-84
Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 51/213 (23%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STIG F +TV L +K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITNE+SF W++ + A+ ++ + G D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD---- 122
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
L R +D +
Sbjct: 123 --------------------------------LANKRAVD---------------FQEAQ 135
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIY 222
+ A + + FMETSAK ++N+ + F+ +A +
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 249 bits (639), Expect = 2e-84
Identities = 56/247 (22%), Positives = 96/247 (38%), Gaps = 59/247 (23%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
A+ FKL+L+GD G GKT + R F +++T+G++ IK
Sbjct: 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
+WDTAGQE+F + YY A ++++D+T+ ++ N+ W R++ E++ ++
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLC 125
Query: 121 G-KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV 179
G K DI + K
Sbjct: 126 GNKV---------------------------DIKDRKV---------------------- 136
Query: 180 NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAPDR 236
K + R+ +++ + SAK+N N EK F+ LA + + P AP
Sbjct: 137 -----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPE 191
Query: 237 VTIDKKP 243
V +D
Sbjct: 192 VVMDPAL 198
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 247 bits (632), Expect = 1e-83
Identities = 65/121 (53%), Positives = 92/121 (76%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
+ + D++FKLLLIG+S VGKT LFR++DD+F F+ST+GIDFK+KTV K+IKL
Sbjct: 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
QIWDTAGQER+ TITT+YYRGAMG +L+YDI N++SF + W I ++ ++ + +++
Sbjct: 74 QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Query: 121 G 121
G
Sbjct: 134 G 134
Score = 163 bits (415), Expect = 8e-51
Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 10/112 (8%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQER+ TITT+YYRGAMG +L+YDI N++SF + W I ++ ++ QV+
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNK 136
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
V G +A + G F E SAK NIN+++ F L I +K +
Sbjct: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 245 bits (628), Expect = 4e-83
Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 57/230 (24%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKK-IK 59
M+ + + K++++GDSGVGKT ++ R+ +D ++ + +TIG DF K V + G K
Sbjct: 1 MSSR-KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT 59
Query: 60 LQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDV 115
+Q+WDTAGQERF ++ ++YRGA +LVYD+TN SF+NI W HAN E
Sbjct: 60 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119
Query: 116 EKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 175
+ILG D ++
Sbjct: 120 PFVILGNKIDAEESKKI------------------------------------------- 136
Query: 176 PQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224
V + + +A+ G + TSAK IN++ AF E+A + +
Sbjct: 137 -------VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 246 bits (629), Expect = 6e-83
Identities = 63/120 (52%), Positives = 92/120 (76%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
+D++FK+L+IG+S VGKT LFR++DD+F F+ST+GIDFK+KT+ K+IKLQ
Sbjct: 1 GSHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQ 60
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAG ER+ TITT+YYRGAMG +L+YDITNE+SF+ + W I ++ ++ + +++G
Sbjct: 61 IWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 120
Score = 167 bits (424), Expect = 5e-52
Identities = 50/129 (38%), Positives = 68/129 (52%), Gaps = 10/129 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAG ER+ TITT+YYRGAMG +L+YDITNE+SF+ + W I ++ ++ QV+
Sbjct: 63 DTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK 122
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAP 234
V RG +A G F E SAK NIN+++ F L I +K S P
Sbjct: 123 CDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADP 182
Query: 235 DRVTIDKKP 243
+ P
Sbjct: 183 AVTGAKQGP 191
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 244 bits (625), Expect = 1e-82
Identities = 104/121 (85%), Positives = 115/121 (95%), Gaps = 1/121 (0%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
MAK TYD+LFKLLLIGDSGVGKTCVLFRFS+DAFN+TFISTIGIDFKI+T++L GK+IKL
Sbjct: 1 MAK-TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKL 59
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
QIWDTAGQERF TITT+YYRGAMGIMLVYDITNEKSFDNI W+RNI+EHA+ DVEKMIL
Sbjct: 60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL 119
Query: 121 G 121
G
Sbjct: 120 G 120
Score = 163 bits (415), Expect = 7e-51
Identities = 69/112 (61%), Positives = 80/112 (71%), Gaps = 10/112 (8%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQERF TITT+YYRGAMGIMLVYDITNEKSFDNI W+RNI+EHA+ D + +
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
V K RGE +A +YG++FMETSAKANIN+E AF LA I K
Sbjct: 123 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 243 bits (621), Expect = 9e-82
Identities = 77/121 (63%), Positives = 104/121 (85%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
K+YD + K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KL
Sbjct: 12 GNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKL 71
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
Q+WDTAGQERF TITT+YYRGAMGI+LVYD+T+E++F NI +W + ++EHAN++ + +++
Sbjct: 72 QLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLV 131
Query: 121 G 121
G
Sbjct: 132 G 132
Score = 163 bits (415), Expect = 2e-50
Identities = 54/138 (39%), Positives = 82/138 (59%), Gaps = 9/138 (6%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQERF TITT+YYRGAMGI+LVYD+T+E++F NI +W + ++EHAN++ Q++
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 134
Query: 180 ----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPD 235
V +GEA+A+E G+ F+E+SAK + N+ + F LA I +K + +
Sbjct: 135 SDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGN 194
Query: 236 RVTIDKKPDRGGMAGGCC 253
+ + G
Sbjct: 195 GKEGNISINSGSGNSSKS 212
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 242 bits (620), Expect = 1e-81
Identities = 62/120 (51%), Positives = 90/120 (75%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
+ YDFLFKL+L+GD+ VGKTCV+ RF AF+ STIG+DF +KT++++GK++KLQ
Sbjct: 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAGQERF TIT SYYR A G +L YDIT SF ++ W+ ++ ++A ++ ++++G
Sbjct: 82 IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141
Score = 158 bits (401), Expect = 1e-48
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 11/114 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQERF TIT SYYR A G +L YDIT SF ++ W+ ++ ++A + +
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 143
Query: 180 -----NSWVCKHRGEAIAREYGVR-FMETSAKANINIEKAFIELATAIYDKTSG 227
V +++A Y + +ETSAK + N+E+AF+ +AT + + G
Sbjct: 144 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG 197
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 241 bits (617), Expect = 3e-81
Identities = 76/120 (63%), Positives = 104/120 (86%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
YD+LFKLLLIGDSGVGK+C+L RF+DD + ++ISTIG+DFKI+T++L GK IKLQ
Sbjct: 26 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 85
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G
Sbjct: 86 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 145
Score = 161 bits (409), Expect = 9e-50
Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 10/110 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+ +
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 147
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
V + A G+ F+ETSAK N+E++F+ +A I +
Sbjct: 148 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 240 bits (616), Expect = 3e-81
Identities = 65/116 (56%), Positives = 92/116 (79%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
+D++FKLL+IG+S VGKT LFR++DD F F+ST+GIDFK+KTV K++KLQIWDT
Sbjct: 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
AGQER+ TITT+YYRGAMG +L+YDITNE+SF+ + W I ++ ++ + +++G
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135
Score = 161 bits (409), Expect = 6e-50
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 10/112 (8%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQER+ TITT+YYRGAMG +L+YDITNE+SF+ + W I ++ ++ QV+
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNK 137
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
V +G+ +A + G F E SAK NI++ +AF L AI DK S
Sbjct: 138 CDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 240 bits (615), Expect = 6e-81
Identities = 76/120 (63%), Positives = 104/120 (86%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
YD+LFKLLLIGDSGVGK+C+L RF+DD + ++ISTIG+DFKI+T++L GK IKLQ
Sbjct: 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 68
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128
Score = 162 bits (411), Expect = 4e-50
Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 10/125 (8%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+ +
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 130
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAP 234
V + A G+ F+ETSAK N+E++F+ +A I +
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA 190
Query: 235 DRVTI 239
++ +
Sbjct: 191 EKSNV 195
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 238 bits (609), Expect = 2e-80
Identities = 70/117 (59%), Positives = 90/117 (76%), Gaps = 1/117 (0%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWD 64
YD FK++L+GDSGVGKTC+L RF D AF TFIST+GIDF+ K +D+ G K+KLQ+WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
TAGQERF ++T +YYR A ++L+YD+TN+ SFDNI WL I E+A DV M+LG
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 123
Score = 163 bits (415), Expect = 7e-51
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 10/112 (8%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQERF ++T +YYR A ++L+YD+TN+ SFDNI WL I E+A D ++
Sbjct: 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 125
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
V + GE +A+EYG+ FMETSAK +N++ AF +A + ++
Sbjct: 126 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSM 177
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 237 bits (606), Expect = 6e-80
Identities = 77/115 (66%), Positives = 101/115 (87%)
Query: 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
D + K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KLQIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
GQERF TITT+YYRGAMGI+LVYDIT+E++F NI +W + ++EHAN++ + +++G
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG 115
Score = 163 bits (414), Expect = 7e-51
Identities = 54/111 (48%), Positives = 77/111 (69%), Gaps = 9/111 (8%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQERF TITT+YYRGAMGI+LVYDIT+E++F NI +W + ++EHAN++ Q++
Sbjct: 58 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 117
Query: 180 ----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
V +GEA+A+E G+ F+E+SAK + N+ + F LA I +K
Sbjct: 118 SDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 168
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 237 bits (608), Expect = 6e-80
Identities = 52/120 (43%), Positives = 85/120 (70%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
+ Y+F+FK++LIG+SGVGKT +L RF+ + F+ +TIG++F +TV L +K Q
Sbjct: 18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQ 77
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAG ER+ IT++YYRGA+G +LV+D+T +++ + +WL+ + +HA + M++G
Sbjct: 78 IWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVG 137
Score = 159 bits (404), Expect = 4e-49
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAG ER+ IT++YYRGA+G +LV+D+T +++ + +WL+ + +HA V+
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 139
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR 228
V A G+ F+ETSA + N+E AF + I+ K S +
Sbjct: 140 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 236 bits (605), Expect = 1e-79
Identities = 68/121 (56%), Positives = 102/121 (84%), Gaps = 2/121 (1%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
MA+ YD LFKLL+IGDSGVGK+ +L RF+D+ F+ ++I+TIG+DFKI+TV++ G+K+KL
Sbjct: 2 MARD-YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKL 60
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
QIWDTAGQERF TIT++YYRG G+++VYD+T+ +SF N+ +WL I+++ +DV ++++
Sbjct: 61 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILV 119
Query: 121 G 121
G
Sbjct: 120 G 120
Score = 155 bits (395), Expect = 6e-48
Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 17/113 (15%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----------- 173
DTAGQERF TIT++YYRG G+++VYD+T+ +SF N+ +WL I+++ +
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKN 123
Query: 174 --EDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+ +VV A + G++ ETSAK N+N+E+ F + +
Sbjct: 124 DDPERKVVE----TEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRA 172
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 236 bits (605), Expect = 2e-79
Identities = 48/123 (39%), Positives = 80/123 (65%), Gaps = 2/123 (1%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
+ + + +FK+++IGDS VGKTC+ +RF F +TIG+DF+ + VD+ G++IK+
Sbjct: 12 VPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKI 71
Query: 61 QIWDTAGQERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKM 118
Q+WDTAGQERF ++ YYR ++ VYD+TN SF ++ W+ +H D+ ++
Sbjct: 72 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI 131
Query: 119 ILG 121
++G
Sbjct: 132 LVG 134
Score = 146 bits (371), Expect = 3e-44
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 125 DTAGQERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV---- 179
DTAGQERF ++ YYR ++ VYD+TN SF ++ W+ +H +
Sbjct: 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134
Query: 180 -------NSWVCKHRGEAIAREYGVRFMETSAKA---NINIEKAFIELATAIY 222
V + A + + ETSAK N ++E F+ LA +
Sbjct: 135 NKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 235 bits (603), Expect = 3e-79
Identities = 57/120 (47%), Positives = 88/120 (73%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
YD+LFK++LIGDSGVGK+ +L RF+ + FN STIG++F +++ + GK IK Q
Sbjct: 22 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 81
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAG ER+ IT++YYRGA+G +LVYDI +++N+ +WL+ + +HA+ ++ M++G
Sbjct: 82 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141
Score = 156 bits (398), Expect = 3e-48
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 10/108 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAG ER+ IT++YYRGA+G +LVYDI +++N+ +WL+ + +HA+ + ++
Sbjct: 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
V A A + G+ F+ETSA + N+E AF + T IY
Sbjct: 144 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 236 bits (605), Expect = 4e-79
Identities = 59/120 (49%), Positives = 89/120 (74%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
YD LFK++LIGDSGVGK+ +L RF+ + FN STIG++F +T++++GK+IK Q
Sbjct: 6 YGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQ 65
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
IWDTAGQER+ IT++YYRGA+G ++VYDI+ S++N WL + E+A+++V ++G
Sbjct: 66 IWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIG 125
Score = 156 bits (396), Expect = 1e-47
Identities = 51/156 (32%), Positives = 73/156 (46%), Gaps = 27/156 (17%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQER+ IT++YYRGA+G ++VYDI+ S++N WL + E+A+++ V
Sbjct: 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNK 127
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS-------- 226
V + A+E + F ETSA + N++KAF EL IY K S
Sbjct: 128 SDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGD 187
Query: 227 -----GRDPLEAPDRVTIDKKPDRGGMA----GGCC 253
+ AP+ TI P CC
Sbjct: 188 SSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 235 bits (602), Expect = 5e-79
Identities = 59/132 (44%), Positives = 92/132 (69%), Gaps = 11/132 (8%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDL------- 53
M+ YD+L K L +GDSGVGKT VL++++D FN+ FI+T+GIDF+ K V
Sbjct: 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62
Query: 54 ---KGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 110
+G++I LQ+WDTAG ERF ++TT+++R AMG +L++D+TNE+SF N+ W+ + H
Sbjct: 63 AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122
Query: 111 A-NEDVEKMILG 121
A +E+ + ++ G
Sbjct: 123 AYSENPDIVLCG 134
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 232 bits (593), Expect = 1e-77
Identities = 57/119 (47%), Positives = 82/119 (68%), Gaps = 1/119 (0%)
Query: 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
+ K+L+IG+SGVGK+ +L RF+DD F+ +TIG+DFK+KT+ + G K KL IW
Sbjct: 10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE-DVEKMILG 121
DTAGQERF T+T SYYRGA G++LVYD+T +F + WL ++ + D+ M++G
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 128
Score = 160 bits (407), Expect = 1e-49
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQERF T+T SYYRGA G++LVYD+T +F + WL ++ + + V
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 129
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAP 234
N V ++ G AR++ + F+E SAK ++ AF EL I +
Sbjct: 130 KIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQN 189
Query: 235 DRVTI 239
+
Sbjct: 190 SGPSS 194
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 230 bits (590), Expect = 2e-77
Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
+ K++++G+ VGK+ ++ R+ F + TIG+DF + + + + ++L +WDT
Sbjct: 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
AGQE F IT +YYRGA +LV+ T+ +SF+ I W + D+ ++
Sbjct: 62 AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQ 116
Score = 155 bits (394), Expect = 7e-48
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQE F IT +YYRGA +LV+ T+ +SF+ I W + + P +
Sbjct: 60 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKI 119
Query: 180 ----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+S + E +A+ +RF TS K ++N+ + F LA K
Sbjct: 120 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 225 bits (575), Expect = 3e-75
Identities = 50/117 (42%), Positives = 75/117 (64%)
Query: 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
FKL+ +G+ VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WD
Sbjct: 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
TAGQERF ++ SY R + ++VYDITN SF KW+ ++ DV M++G
Sbjct: 70 TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVG 126
Score = 151 bits (383), Expect = 4e-46
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQERF ++ SY R + ++VYDITN SF KW+ ++ D ++
Sbjct: 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNK 128
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
V GE A+E V F+ETSAKA N+++ F +A A+
Sbjct: 129 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 221 bits (567), Expect = 5e-74
Identities = 45/112 (40%), Positives = 68/112 (60%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K+ L+GD+GVGK+ +++RF +D+F+ TIG F KTV + + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
RF + YYRG+ ++VYDIT E++F + W+R + +H + I G
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 118
Score = 150 bits (382), Expect = 5e-46
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAG ERF + YYRG+ ++VYDIT E++F + W+R + +H V
Sbjct: 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
V + + A F+ETSAK INI + FIE++ I
Sbjct: 121 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 222 bits (567), Expect = 5e-74
Identities = 46/125 (36%), Positives = 76/125 (60%), Gaps = 6/125 (4%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
MA LFK++L+GD GVGK+ ++ R+ + F+T TIG++F K +++ G + +
Sbjct: 1 MAG--KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVE 116
QIWDTAGQERF ++ T +YRG+ +L + + + +SF N+ W + +A+ E
Sbjct: 59 QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118
Query: 117 KMILG 121
+ILG
Sbjct: 119 FVILG 123
Score = 140 bits (356), Expect = 4e-42
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDPQVV---- 179
DTAGQERF ++ T +YRG+ +L + + + +SF N+ W + +A+ ++P+
Sbjct: 62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121
Query: 180 --------NSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224
V +A R+ G + ETSAK N+ AF E +
Sbjct: 122 LGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 220 bits (564), Expect = 2e-73
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK-KIKLQIW 63
++ K++++GD GKT + F+ + F + TIG+DF ++ + L G + LQIW
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE---HANEDVEKMIL 120
D GQ + Y GA G++LVYDITN +SF+N+ W + + + ++
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 121 G 121
G
Sbjct: 122 G 122
Score = 150 bits (380), Expect = 1e-45
Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 13/117 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE---HANEDPQVV-- 179
D GQ + Y GA G++LVYDITN +SF+N+ W + + + P V
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 180 --------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR 228
+ + +E G SAK ++ F ++A I +
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 217 bits (554), Expect = 3e-72
Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 48/215 (22%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
KL+L+G++ VGK+ ++ RF + F TIG F + V + +K +IWDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
RF ++ YYR A ++VYD+T +SF W++ + E A++D+ ++G D +
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ GE
Sbjct: 124 GGERKVARE------------------------------------------------EGE 135
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+A E G+ F ETSAK N+ F+ + I K
Sbjct: 136 KLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 214 bits (546), Expect = 2e-70
Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 31/227 (13%)
Query: 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
+K +L+G+S VGK+ ++ R + D F+ +TIG F V+L IK +
Sbjct: 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
+ + FD W
Sbjct: 63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFD---IW--------------------- 98
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
DTAGQER+ +I YYRGA ++V+DI+N + D W+ + +N +V
Sbjct: 99 DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158
Query: 180 --NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
V + A++ + F++TSAK NI+ F LA IY
Sbjct: 159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 209 bits (533), Expect = 2e-68
Identities = 23/124 (18%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDA--FNTTFISTIGIDFKIKTVDLKGKKIKLQI 62
T K+ ++G++ VGK+ ++ F+ F + T G++ + V + + +++
Sbjct: 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVEL 75
Query: 63 W--DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE---HANEDVEK 117
+ DTAG + + + Y+ G +LV+D+++ +SF++ W + +
Sbjct: 76 FLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRA 135
Query: 118 MILG 121
+++
Sbjct: 136 VLVA 139
Score = 143 bits (364), Expect = 6e-43
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN---- 180
DTAG + + + Y+ G +LV+D+++ +SF++ W + + + +
Sbjct: 79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138
Query: 181 ----------SWVCKHRGEAIAREYGVRFMETSAKA-NINIEKAFIELATAIYDKTS 226
V + A + F + SA + + F+ +AT Y
Sbjct: 139 ANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYE 195
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 191 bits (487), Expect = 7e-62
Identities = 37/226 (16%), Positives = 79/226 (34%), Gaps = 60/226 (26%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTT--FISTIGIDFKIKTVDLKGKK---IKLQIWD 64
KL+++G++G GKT +L + + +T+GID K + ++ K+ + L +WD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKS-FDNILKWLRNIDEHANEDVEKMILGKT 123
AG+E F++ + + VYD++ ++ D + WL NI A+ +++G T
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVG-T 120
Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
D+++EK
Sbjct: 121 H-------------------------LDVSDEKQRKA----------------------C 133
Query: 184 CKHRGEAIAREYGV-----RFMETSAKANINIEKAFIELATAIYDK 224
+ + + G + + + + K + +
Sbjct: 134 MSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 188 bits (479), Expect = 3e-60
Identities = 39/237 (16%), Positives = 86/237 (36%), Gaps = 64/237 (27%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKK-- 57
++ ++ + ++++LIG+ GVGK+ + F+ + + +G D +T+ + G+
Sbjct: 29 ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 88
Query: 58 -IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDV 115
I L +W+ G+ + + + ++VY IT+ SF+ + + ED+
Sbjct: 89 IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDI 146
Query: 116 EKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV---YDITNEKSFDNILKWLRNIDEHA 172
I+LV D+ +
Sbjct: 147 P-----------------------------IILVGNKSDLVRCRE--------------- 162
Query: 173 NEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD 229
V G A A + +F+ETSA N+++ F + + + ++
Sbjct: 163 ----------VSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 209
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 185 bits (471), Expect = 2e-59
Identities = 42/222 (18%), Positives = 77/222 (34%), Gaps = 61/222 (27%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L++++L+GD GVGKT + F+ +G D +T+ + G+ L + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 69 ERFHTITT--SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKD 125
E+ + S +G ++VY I + SF++ + + H + V
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP--------- 113
Query: 126 TAGQERFHTITTSYYRGAMGIMLV---YDITNEKSFDNILKWLRNIDEHANEDPQVVNSW 182
I+LV D+ +
Sbjct: 114 --------------------IILVGNKADLARCRE------------------------- 128
Query: 183 VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
V G A A + +F+ETSA N+ + F + + +
Sbjct: 129 VSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLR 170
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 183 bits (468), Expect = 9e-59
Identities = 22/118 (18%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
D +FK++L+G+SGVGK+ + F ++ D + + + +++ L ++D
Sbjct: 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDI 79
Query: 66 AGQERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
Q + + ++V+ +T+ +SF + + L + + D+ +++G
Sbjct: 80 WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 137
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 178 bits (454), Expect = 8e-57
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQI 62
KL+++G GVGK+ + +F F + + TI D K + G +L I
Sbjct: 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDI 61
Query: 63 WDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
DTAGQE F + Y R G +LV+ I + +SF+ + K I +D +++G
Sbjct: 62 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121
Score = 130 bits (329), Expect = 4e-38
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDPQVV---- 179
DTAGQE F + Y R G +LV+ I + +SF+ + K I +D VV
Sbjct: 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 122
Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDP 230
V + A + V + E SAK +N+++AF +L A+ P
Sbjct: 123 KADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQELP 179
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 177 bits (452), Expect = 1e-56
Identities = 21/115 (18%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
+FK++L+G+SGVGK+ + F + D + + + +++ L ++D Q
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 69 ERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
+ + ++V+ +T+ +SF + + L + + D+ +++G
Sbjct: 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 116
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 178 bits (453), Expect = 2e-56
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
+ L K++++G GVGK+ + +F D F + T ++ K V L G+++++
Sbjct: 11 GSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQID 69
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMIL 120
I DTAGQE + I +Y+R G + V+ IT +SF + I +E+V +++
Sbjct: 70 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLV 129
Query: 121 G 121
G
Sbjct: 130 G 130
Score = 129 bits (327), Expect = 1e-37
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDPQVV---- 179
DTAGQE + I +Y+R G + V+ IT +SF + I +E+ +
Sbjct: 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 131
Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
V + A ++ V ++ETSAK N++K F +L I +
Sbjct: 132 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 176 bits (448), Expect = 8e-56
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
+KL+++GD GVGK+ + +F F + TI D +K ++ + L
Sbjct: 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILD 69
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMIL 120
+ DTAGQE F + Y R G ++VY +T++ SF+++ ++ + I E +++
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 121 G 121
Sbjct: 130 A 130
Score = 125 bits (317), Expect = 4e-36
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 12/112 (10%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
DTAGQE F + Y R G ++VY +T++ SF+++ ++ + I + + P ++
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131
Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAK-ANINIEKAFIELATAIYDK 224
V + +G+ +A +Y + ++ETSAK +N++K F +L I +
Sbjct: 132 KVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 176 bits (449), Expect = 9e-56
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
+ L K++++G GVGK+ + +F D F + T ++ K V L G+++++
Sbjct: 7 KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQID 65
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMIL 120
I DTAGQE + I +Y+R G + V+ IT +SF + I +E+V +++
Sbjct: 66 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLV 125
Query: 121 G 121
G
Sbjct: 126 G 126
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 171 bits (435), Expect = 4e-54
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K++++G GVGK+ + +F D F + T ++ K V L G+++++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
E + I +Y+R G + V+ IT +SF + I +E+V +++G
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116
Score = 129 bits (328), Expect = 6e-38
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDPQVV---- 179
DTAGQE + I +Y+R G + V+ IT +SF + I +E+ +
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117
Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
V + A ++ V ++ETSAK N++K F +L I +
Sbjct: 118 KSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 171 bits (435), Expect = 1e-53
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
+++++ G GVGK+ ++ RF F T+I TI ++ + + LQI DT
Sbjct: 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDT 63
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE--HANEDVEKMILG 121
G +F + +LV+ +T+++S + + + I + + ED+ M++G
Sbjct: 64 TGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 169 bits (431), Expect = 4e-53
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K++++G VGKT + +F + F+ + T+ + K V L + L + DTAGQ+
Sbjct: 25 RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQD 83
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
+ + S+ G G +LVY +T+ SF I + + E H V +++G
Sbjct: 84 EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136
Score = 129 bits (326), Expect = 2e-37
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDPQVV---- 179
DTAGQ+ + + S+ G G +LVY +T+ SF I + + E H VV
Sbjct: 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137
Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
V G+ +A +G FME+SA+ N + F ++ I
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 168 bits (427), Expect = 6e-53
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+K++++G GVGK+ + +F F + TI DF K +++ L+I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
+F ++ Y + G +LVY + N++SF +I I E V +++G
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115
Score = 125 bits (316), Expect = 3e-36
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
DTAG E+F ++ Y + G +LVY + N++SF +I I + P ++
Sbjct: 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116
Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
V G A+A E+G FMETSAK+ +++ F E+ +
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 168 bits (427), Expect = 7e-53
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + + + F TI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILG 121
+ + Y R G + V+ I N KSF++I ++ I + +DV +++G
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Score = 127 bits (321), Expect = 5e-37
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
DTAGQE + + Y R G + V+ I N KSF++I ++ I + D P V+
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
V + + +AR YG+ ++ETSAK +E AF L I
Sbjct: 117 KSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 168 bits (428), Expect = 8e-53
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K+ ++G VGK+ + +F + F ++ TI F K + + G++ LQ+ DTAGQ+
Sbjct: 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQD 65
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI-DEHANEDVEKMILG 121
+ +Y G +LVY +T+ KSF+ I + D + M++G
Sbjct: 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG 118
Score = 126 bits (319), Expect = 2e-36
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI-DEHANEDPQVV---- 179
DTAGQ+ + +Y G +LVY +T+ KSF+ I + D ++
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
+ G+A+A + F+E+SAK N F +
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 167 bits (426), Expect = 2e-52
Identities = 35/217 (16%), Positives = 76/217 (35%), Gaps = 58/217 (26%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K+ ++G+ GK+ ++ R+ + S G FK K + + G+ L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFK-KEIVVDGQSYLLLIRDEGGPP 78
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAG 128
+ ++ V+ + +E SF + + + N +V +++G T+D
Sbjct: 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVG-TQD--- 129
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
I+ +P+V++ R
Sbjct: 130 ----------------------AIS-------------------AANPRVID----DSRA 144
Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224
++ + + ET A +N+E+ F ++A +
Sbjct: 145 RKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 167 bits (426), Expect = 2e-52
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + + + F + TI ++ K V + G+ L I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILG 121
+ + Y R G + V+ I N KSF +I + I + +DV +++G
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 165 bits (421), Expect = 6e-52
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + +F F + TI ++ K V++ ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
+F + Y + G LVY IT + +F+++ I EDV +++G
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115
Score = 120 bits (303), Expect = 3e-34
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDPQVV---- 179
DTAG E+F + Y + G LVY IT + +F+++ I ED ++
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
Query: 180 ------NSWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAI 221
V K +G+ +AR++ F+E+SAK+ IN+ + F +L I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 166 bits (422), Expect = 7e-52
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + + + F + TI ++ K V + G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
+ + Y R G + V+ I N KSF++I + I +EDV +++G
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Score = 128 bits (323), Expect = 4e-37
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 19/139 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
DTAGQE + + Y R G + V+ I N KSF++I + I + + P V+
Sbjct: 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAP 234
+ V + + +AR YG+ F+ETSAK ++ AF L I +
Sbjct: 118 KCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI---------RKHK 168
Query: 235 DRVTIDKKPDRGGMAGGCC 253
++++ D K + C
Sbjct: 169 EKMSKDGKKKKKKSKTKCV 187
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 165 bits (420), Expect = 9e-52
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+++ + G GVGK+ ++ RF F ++I T+ ++ + + LQI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILG 121
+F + +LVY IT+ +S + + I E E + M++G
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 116
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 164 bits (419), Expect = 1e-51
Identities = 22/114 (19%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
++K+LL+G GVGK+ + F + G + +++ + G++ L ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
+ + ++VY +T++ SF+ + + +DV +++G
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 113
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 157 bits (399), Expect = 1e-48
Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 54/217 (24%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
+L ++GD+ GK+ ++ RF ++ T +K K + + G+ + I + AG
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYK-KEMLVDGQTHLVLIREEAGA 64
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
+ A ++ V+ + +E SF + + + E +
Sbjct: 65 PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA--------- 110
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
+ LV T ++ I P+VV R
Sbjct: 111 -----------------LALV--GTQDR-----------ISA---SSPRVVG----DARA 133
Query: 189 EAI-AREYGVRFMETSAKANINIEKAFIELATAIYDK 224
A+ A + ET A +N+++ F E+A +
Sbjct: 134 RALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 155 bits (393), Expect = 2e-47
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
KL + G +GVGK+ ++ RF F + T+ ++ + + + ++I D
Sbjct: 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILD 82
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
TAGQE + R G +LVYDIT+ SF+ +L +DE ++V +++G
Sbjct: 83 TAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 152 bits (385), Expect = 2e-46
Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKK---IKLQIWD 64
++++LIG+ GVGK+ + F+ + + +G D +T+ + G+ I L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
G+ + + + ++VY IT+ SF+ + + ED+ +++G
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 160 bits (406), Expect = 4e-46
Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 63/228 (27%)
Query: 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV--------DLKGK 56
+ K+ LIGD GKT +L + + F+ T G++ K D + K
Sbjct: 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELK 96
Query: 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE 116
+ WD GQE H + + ML+ D + N WLR+I+++ +
Sbjct: 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKSP- 152
Query: 117 KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDP 176
+++ K IDE+ + +
Sbjct: 153 VIVVM-NK-------------------------------------------IDENPSYN- 167
Query: 177 QVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+ + + RF S K +E L +A+
Sbjct: 168 ------IEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 141 bits (358), Expect = 3e-42
Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
L ++G G GK+ + +F F + + + + + + + L++ DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLD 80
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA---NEDVEKMILG 121
Y A ++VY + + +SFD+ +L + HA + ++LG
Sbjct: 81 TPRNCE-RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLG 134
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 139 bits (353), Expect = 2e-41
Identities = 50/225 (22%), Positives = 89/225 (39%), Gaps = 53/225 (23%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
+ K++++GD VGKTC+L FS T ++ T+ +F + K ++ L
Sbjct: 16 KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILH 74
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMIL 120
+WDTAGQE + + Y + ++L + + N SFDNI KW I + + + +++
Sbjct: 75 LWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLV 133
Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
G D LR +D
Sbjct: 134 GLKVD---------------------------------------LR-------KDGSDD- 146
Query: 181 SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224
V K G+ + ++ G V ++E S+ A I + + F + I+
Sbjct: 147 --VTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 136 bits (345), Expect = 4e-40
Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 43/217 (19%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K++L+GD G GKT +L F+D AF ++ T+ + + + +KGK + L IWDTAGQ+
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAG 128
+ + +Y A ++L +D+T+ SFDNI +W ++ + V +++G D
Sbjct: 94 DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTD--- 149
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
LR N+ + V HRG
Sbjct: 150 ------------------------------------LRKDKSLVNKLRRNGLEPVTYHRG 173
Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224
+ +AR G V ++E SA+ + N+ F E A
Sbjct: 174 QEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 127 bits (320), Expect = 9e-37
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 45/214 (21%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K + +GD VGKTC+L ++ + F T ++ T+ +F V + G + L +WDTAGQE
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQE 67
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAG 128
++ + YRGA +L + + ++ S++N+ KW+ + +A V +++G TK
Sbjct: 68 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVG-TK---- 121
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
D+ ++K + +H P + +G
Sbjct: 122 ---------------------LDLRDDK---------QFFIDHPGAVP------ITTVQG 145
Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
E + + G ++E S+K+ N++ F +
Sbjct: 146 EELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 127 bits (321), Expect = 1e-36
Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 44/211 (20%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L FS D F ++ T+ + I +++ GK+++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQED 85
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI KW + +V +++G KD
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD---- 140
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
LR + E ++ V G
Sbjct: 141 -----------------------------------LRQDEHTRRELAKMKQEPVRSEEGR 165
Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELAT 219
+A ++E SAK + + F E+AT
Sbjct: 166 DMANRISAFGYLECSAKTKEGVREVF-EMAT 195
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 124 bits (314), Expect = 2e-35
Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 43/216 (19%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+++GD GKTC+L FS D F ++ T+ ++ + +++ GK+++L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + + + S +NI KW+ + +V +++ KD
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKD---- 140
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
LR+ + E ++ V G
Sbjct: 141 -----------------------------------LRSDEHVRTELARMKQEPVRTDDGR 165
Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224
A+A ++E SAK + + F A K
Sbjct: 166 AMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 122 bits (307), Expect = 1e-34
Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 44/212 (20%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAG 128
+ + Y ++ + + + SF+N+ KW + H + +++G D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLD--- 145
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
LR+ + + + + + +G
Sbjct: 146 ------------------------------------LRDDKDTIEKLKEKKLTPITYPQG 169
Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELAT 219
A+A+E G V+++E SA ++ F + A
Sbjct: 170 LAMAKEIGAVKYLECSALTQRGLKTVF-DEAI 200
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 121 bits (305), Expect = 4e-34
Identities = 58/252 (23%), Positives = 101/252 (40%), Gaps = 59/252 (23%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K + +GD VGKTC+L ++ + F T +I T+ D V + G+ + L +WDTAGQE
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQE 68
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAG 128
+ + YRGA +L + + ++ S++N+L KW+ + A +V +++G D
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLD--- 124
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
LR+ D+ D V + +G
Sbjct: 125 ------------------------------------LRD-DKGYLADHTNV---ITSTQG 144
Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDRGG 247
E + ++ G ++E S+K N++ F + P + K R G
Sbjct: 145 EELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV------LQPPRRKEVPRRRKNHRRSG 198
Query: 248 ------MAGGCC 253
+ GGC
Sbjct: 199 CSIASIVCGGCT 210
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 121 bits (304), Expect = 1e-33
Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 67/246 (27%)
Query: 16 GDSGVGKTCVLFRF---SDDAFNTTFISTIG-IDFKIKTVD--------------LKGKK 57
G G+GK+C+ RF S D F+ S + DF + V+ +
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94
Query: 58 IKLQIW-------DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 110
K+ I D Q T Y + A L
Sbjct: 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASA-------------------- 134
Query: 111 ANEDVEKMILGKTKDTAGQERF--HTITTSYYRGAMGIMLVYDITNE--KSFDNILKWLR 166
+ ++ D G E+ G +L D++ ++FD+ LK++
Sbjct: 135 ------EKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVS 188
Query: 167 NIDEHANED--PQVV---------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFI 215
N+ + P VV ++ A++++ ++ +ETSA++N+N++ AF
Sbjct: 189 NLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFS 247
Query: 216 ELATAI 221
L I
Sbjct: 248 TLVQLI 253
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 119 bits (299), Expect = 3e-33
Identities = 42/216 (19%), Positives = 89/216 (41%), Gaps = 43/216 (19%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
+ K++++GDS GKT +L F+ D F ++ T+ ++ + ++ ++I+L +WDT
Sbjct: 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDT 83
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTK 124
+G + + Y + +++ +DI+ ++ D++L KW I E + + +++G
Sbjct: 84 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKS 142
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
D LR E + V
Sbjct: 143 D---------------------------------------LRTDVSTLVELSNHRQTPVS 163
Query: 185 KHRGEAIAREYG-VRFMETSAKANINIEKAFIELAT 219
+G +A++ G ++E SA + N + +AT
Sbjct: 164 YDQGANMAKQIGAATYIECSALQSENSVRDIFHVAT 199
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 117 bits (294), Expect = 9e-33
Identities = 42/211 (19%), Positives = 88/211 (41%), Gaps = 43/211 (20%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K++++GDS GKT +L F+ D F ++ T+ ++ + ++ ++I+L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y + +++ +DI+ ++ D++L KW I E + + +++G D
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSD---- 122
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
LR E + V +G
Sbjct: 123 -----------------------------------LRTDVSTLVELSNHRQTPVSYDQGA 147
Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELAT 219
+A++ G ++E SA + N + +AT
Sbjct: 148 NMAKQIGAATYIECSALQSENSVRDIFHVAT 178
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 114 bits (288), Expect = 1e-31
Identities = 47/216 (21%), Positives = 81/216 (37%), Gaps = 43/216 (19%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +L+GD VGKT ++ ++ + + T +I T D V + G+ ++LQ+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
F + Y +L + + + SF N+ KW+ I H +IL T+
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKA-PIILVGTQS---- 134
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
D+ + L E P V + +
Sbjct: 135 ---------------------DLREDVKVLIELD-------KCKEKP------VPEEAAK 160
Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224
+A E ++E SA N+++ F A
Sbjct: 161 LLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 113 bits (285), Expect = 2e-31
Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 44/211 (20%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y ++ + + + SF+N+ KW + H + +++G D
Sbjct: 66 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLD---- 120
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
LR+ + + + + + +G
Sbjct: 121 -----------------------------------LRDDKDTIEKLKEKKLTPITYPQGL 145
Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELAT 219
A+A+E G V+++E SA ++ F + A
Sbjct: 146 AMAKEIGAVKYLECSALTQRGLKTVF-DEAI 175
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 113 bits (284), Expect = 2e-31
Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 43/223 (19%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
MA + K +++GD VGKTC+L +++DAF ++ T+ D +V + GK+ L
Sbjct: 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 68
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMI 119
++DTAGQE + + Y ++ + + N SF N+ +W+ + E+A +V +
Sbjct: 69 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNV-PFL 126
Query: 120 LGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV 179
L T+ D+ ++ L E P
Sbjct: 127 LIGTQ-------------------------IDLRDDPKTLARLN-------DMKEKP--- 151
Query: 180 NSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+C +G+ +A+E G ++E SA ++ F E AI
Sbjct: 152 ---ICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 110 bits (277), Expect = 5e-30
Identities = 43/220 (19%), Positives = 88/220 (40%), Gaps = 44/220 (20%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
KL+L+GD GKT +L + D + T++ T+ ++ ++ + ++++L +WDT+G
Sbjct: 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSP 86
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILK-WLRNIDEHANEDVEKMILGKTKDTAG 128
+ + Y + ++L +DI+ ++ D+ LK W I ++ +++G D
Sbjct: 87 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTD--- 142
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
LR E + + +G
Sbjct: 143 ------------------------------------LRTDLSTLMELSHQKQAPISYEQG 166
Query: 189 EAIAREYG-VRFMETSAK-ANINIEKAFIELATAIYDKTS 226
AIA++ G ++E SA + +I F + +K S
Sbjct: 167 CAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 80.0 bits (197), Expect = 1e-17
Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 44/212 (20%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAG 128
+ + Y ++ + + + SF ++ KW + H + +IL TK
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNT-PIILVGTK---- 268
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
D+ ++K LK P + +G
Sbjct: 269 ---------------------LDLRDDKDTIEKLK-------EKKLTP------ITYPQG 294
Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELAT 219
A+A+E G V+++E SA ++ F + A
Sbjct: 295 LAMAKEIGAVKYLECSALTQRGLKTVF-DEAI 325
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 72.9 bits (179), Expect = 7e-16
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 12/120 (10%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSD----------DAFNTTFISTIGIDFKIKTVD-LKGKKI 58
FK++ G GKT L + T T+ DF + +KG K
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74
Query: 59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKM 118
+ ++ GQ ++ RG GI+ V D + N + +RN+ E+ E +
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANA-ESMRNMRENLAEYGLTL 133
Score = 41.3 bits (97), Expect = 8e-05
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 14/114 (12%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDIT------NEKSFDNILKWLRNIDEHANEDPQV 178
GQ ++ RG GI+ V D N +S N+ + L ++ P V
Sbjct: 80 TVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIV 139
Query: 179 V--------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+ ++ + + E +E A + + E++ + +
Sbjct: 140 IQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 63.7 bits (156), Expect = 9e-13
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G G GKT +L+R TT I TIG F ++TV K +K Q+WD G
Sbjct: 8 MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYKN--LKFQVWDLGGLT 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
YY ++ V D +
Sbjct: 63 SIRPYWRCYYSNTDAVIYVVDSCDRDRIG 91
Score = 27.9 bits (63), Expect = 2.1
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 4/49 (8%)
Query: 115 VEKMILGKTK----DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159
VE + K D G YY ++ V D +
Sbjct: 43 VETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIG 91
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 63.0 bits (154), Expect = 2e-12
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G G GKT +L+R TT TIG F ++T+ K +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSYKN--LKLNVWDLGGQT 73
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
YY ++ V D T++
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMS 102
Score = 28.8 bits (65), Expect = 1.2
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 115 VEKMILGKTK----DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159
VE + K D GQ YY ++ V D T++
Sbjct: 54 VETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMS 102
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 62.7 bits (153), Expect = 3e-12
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K++++G GKT +L++FS + T TIG ++ + + + +WD GQE
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVINN--TRFLMWDIGGQE 71
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
+ +YY +++V D T+ +
Sbjct: 72 SLRSSWNTYYTNTEFVIVVVDSTDRERIS 100
Score = 28.8 bits (65), Expect = 1.4
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 115 VEKMILGKTK----DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159
VE++++ T+ D GQE + +YY +++V D T+ +
Sbjct: 52 VEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 100
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 62.2 bits (152), Expect = 3e-12
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
++L++G GKT +L++ TT I TIG F ++TV+ K I +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDK 56
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFD 98
+ Y++ G++ V D + + +
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVN 84
Score = 27.9 bits (63), Expect = 2.2
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 115 VEKMILGKTK----DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159
VE + D GQ++ + Y++ G++ V D + + +
Sbjct: 36 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 84
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 62.3 bits (152), Expect = 3e-12
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I TIG F ++TV+ K I +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ICFTVWDVGGQD 84
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 110
+ + Y++ G++ V D + + L+ + +
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE 125
Score = 27.6 bits (62), Expect = 2.7
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 115 VEKMILGKTK----DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE 170
VE + D GQ++ + Y++ G++ V D + + L+ + +
Sbjct: 65 VETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ 124
Query: 171 H 171
Sbjct: 125 E 125
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 61.9 bits (151), Expect = 4e-12
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K++++G GKT +L++FS + T TIG ++ + + + +WD GQE
Sbjct: 22 HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVINN--TRFLMWDIGGQE 76
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
+ +YY +++V D T+ +
Sbjct: 77 SLRSSWNTYYTNTEFVIVVVDSTDRERIS 105
Score = 27.6 bits (62), Expect = 3.1
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 115 VEKMILGKTK----DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159
VE++++ T+ D GQE + +YY +++V D T+ +
Sbjct: 57 VEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 105
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 61.8 bits (151), Expect = 5e-12
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+L L+G GKT + + FN I T+G F ++ + + +++WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
RF ++ Y RG I+ + D +++ +
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIE 107
Score = 27.9 bits (63), Expect = 2.4
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 115 VEKMILGKTK----DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159
+ K+ G D GQ RF ++ Y RG I+ + D +++ +
Sbjct: 59 MRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIE 107
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 61.9 bits (151), Expect = 6e-12
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+LL++G GKT +L +F+ + +T T+G F IKT++ +G KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
+ +Y+ G++ V D + +
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQ 102
Score = 28.0 bits (63), Expect = 2.5
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 115 VEKMILGKTK----DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159
++ + K D GQ+ + +Y+ G++ V D + +
Sbjct: 54 IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ 102
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 61.4 bits (150), Expect = 6e-12
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++LL+G GKT +L + + + + T G F IK+V +G KL +WD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQSQG--FKLNVWDIGGQR 71
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
+ SY+ ++ V D + K F+
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADRKRFE 100
Score = 27.9 bits (63), Expect = 2.4
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 115 VEKMILGKTK----DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159
++ + K D GQ + SY+ ++ V D + K F+
Sbjct: 52 IKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 61.5 bits (150), Expect = 8e-12
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L+R TT + T+G ++T+ K I ++WD GQ
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLETLQYKN--ISFEVWDLGGQT 77
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
Y+ ++ V D T+
Sbjct: 78 GVRPYWRCYFSDTDAVIYVVDSTDRDRMG 106
Score = 26.8 bits (60), Expect = 5.5
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 4/49 (8%)
Query: 115 VEKMILGKTK----DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159
+E + D GQ Y+ ++ V D T+
Sbjct: 58 LETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMG 106
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 59.2 bits (144), Expect = 5e-11
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 10 FKLLLIGDSGVGKTCVLFRF-SDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
+L +G GKT ++ + +A + + TIG F I+ + ++D +GQ
Sbjct: 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQ 77
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFD 98
R+ + YY+ I+ V D ++
Sbjct: 78 GRYRNLWEHYYKEGQAIIFVIDSSDRLRMV 107
Score = 27.6 bits (62), Expect = 3.1
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 115 VEKMILGKTK----DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 159
+EK D +GQ R+ + YY+ I+ V D ++
Sbjct: 59 IEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMV 107
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 57.7 bits (140), Expect = 2e-10
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+ +G GKT +L DD + T+ + + + G + +D G +
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELTIAG--MTFTTFDLGGHIQ 81
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFD 98
+ +Y GI+ + D + +
Sbjct: 82 ARRVWKNYLPAINGIVFLVDCADHERLL 109
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 57.2 bits (139), Expect = 2e-10
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KLL +G GKT +L +D T T + + + IK +D G +
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEELAIGN--IKFTTFDLGGHIQ 79
Query: 71 FHTITTSYYRGAMGIMLVYD 90
+ Y+ GI+ + D
Sbjct: 80 ARRLWKDYFPEVNGIVFLVD 99
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 58.1 bits (140), Expect = 4e-10
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 11 KLLLIGDSGVGKTCVL-FRFSDDAFN--TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
KLLL+G SG GK+ + FS+ + +TI + + G + L +WD G
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--VEHSHLRFLG-NMTLNLWDCGG 61
Query: 68 QERF-----HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE 109
Q+ F ++ ++ V+D+ + + +I + + + +
Sbjct: 62 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQ 108
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 56.5 bits (136), Expect = 5e-10
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 7/106 (6%)
Query: 11 KLLLIGDSGVGKTCVLFR-FSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++LL+G GK+ + F + N T + + QIWD GQ
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSS-FVNFQIWDFPGQM 80
Query: 70 RFHTIT---TSYYRGAMGIMLVYDITNE--KSFDNILKWLRNIDEH 110
F T +RG ++ V D ++ ++ + + +
Sbjct: 81 DFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV 126
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 56.3 bits (136), Expect = 8e-10
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKK-IKLQIWDTAGQE 69
+L +G GKT + R + T ++I + + L + D G E
Sbjct: 9 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65
Query: 70 RF-HTITTSYYRGAMGIMLVYD 90
+ + A ++ V D
Sbjct: 66 SLRFQLLDRFKSSARAVVFVVD 87
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 57.2 bits (138), Expect = 9e-10
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I T+G F ++TV K +K +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYKN--VKFNVWDVGGQD 377
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
+ + YY G G++ V D
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVD 398
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 54.9 bits (132), Expect = 5e-09
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
++L++G GKT +L++ TT I TIG F ++TV+ K I
Sbjct: 157 PRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISF 211
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYD 90
+WD GQ++ + Y++ G++ V D
Sbjct: 212 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 51.3 bits (123), Expect = 3e-08
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
+++ G GKT +L + D+ T + + + D G + + D G +
Sbjct: 50 SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE---PLSAADYDGS--GVTLVDFPGHVK 103
Query: 71 FHTITTSYYRGAM----GIMLVYD 90
+ Y + G++ + D
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVD 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 49.0 bits (117), Expect = 3e-07
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71
+++ G GKT +L + D+ T + + + D G + + D G +
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE---PLSAADYDGSG--VTLVDFPGHVKL 68
Query: 72 HTITTSYY----RGAMGIMLVYD 90
+ Y + G++ + D
Sbjct: 69 RYKLSDYLKTRAKFVKGLIFMVD 91
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 47.7 bits (113), Expect = 1e-06
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 9/106 (8%)
Query: 12 LLLIGDSGVGKTCVL-FRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
+LL+G GK+ + F + T + I L + + GQ
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTL--YLESTSNPSLEHFST-LIDLAVMELPGQLN 58
Query: 71 FH---TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE 113
+ + ++ ++ V D +E + L I E+A +
Sbjct: 59 YFEPSYDSERLFKSVGALVYVIDSQDEYINA--ITNLAMIIEYAYK 102
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 6e-05
Identities = 42/264 (15%), Positives = 69/264 (26%), Gaps = 92/264 (34%)
Query: 8 FL-FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKI-----KLQ 61
FL + L+ S VG+ + F + L+G I KL
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--------------LEGNDIHALAAKLL 109
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKM--I 119
+ + + +Y A + +K ++ L R E ++ I
Sbjct: 110 QENDTTLVKTKELIKNYIT-ARIMA---KRPFDKKSNSAL--FR----AVGEGNAQLVAI 159
Query: 120 LGKTKDTAGQ-----------ERFHTITTSYYRG-------AMGIMLVYDITNEKSFD-- 159
G GQ + + T Y L I +
Sbjct: 160 FG------GQGNTDDYFEELRDLYQT-----YHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 160 -----NILKWLRNIDEHANED---------P-----QVVNSWV-CK----HRGEAIAREY 195
NIL+WL N ++D P Q+ + V K GE +
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 196 GVRFMETSAKANINIEKAFIELAT 219
G T + + I
Sbjct: 269 GA----TGHSQGL-VTAVAIAETD 287
Score = 38.9 bits (90), Expect = 0.001
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 19/92 (20%)
Query: 138 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE------------DPQVVNSWVCK 185
S +G MG M +Y K+ ++ W R D H + +P +
Sbjct: 1626 SQEQG-MG-MDLYK--TSKAAQDV--WNR-ADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIEL 217
+G+ I Y ET + EK F E+
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Score = 34.3 bits (78), Expect = 0.044
Identities = 29/203 (14%), Positives = 56/203 (27%), Gaps = 82/203 (40%)
Query: 103 WLRNIDEHANEDVEKMI-----LGKTKDTAGQERF--HTITTSYYR-------GAMGIML 148
W E V K I +G E + ++ S G ML
Sbjct: 289 W-----ESFFVSVRKAITVLFFIG----VRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 149 -VYDITNEKSFDNILKWLRNIDEHANEDPQV----VNS------------------WVCK 185
+ ++T E+ + ++ + H QV VN + K
Sbjct: 340 SISNLTQEQ----VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 186 HR---GEAIAR--------EYGVRFMETSA-------------------KANINIEKAFI 215
+ G +R ++ RF+ ++ K N++
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK-- 453
Query: 216 ELATAIYDKTSGRDPLEAPDRVT 238
++ +YD G D ++
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSIS 476
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.001
Identities = 26/206 (12%), Positives = 73/206 (35%), Gaps = 44/206 (21%)
Query: 7 DFLFKLLLI-GDSGVGKTCVLFRFSDDAF--NTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
LF LL + V +F ++ N F+ + IKT + + +++
Sbjct: 65 LRLFWTLLSKQEEMV------QKFVEEVLRINYKFLMS-----PIKTEQ-RQPSMMTRMY 112
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMI-LGK 122
++R + + + Y+++ + + + + L + N ++ ++ GK
Sbjct: 113 IEQ-RDRLYNDNQVFAK--------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 123 TKDTAGQERFHTITTSYYRGAMGIMLVY--DITNEKSFDNILKWLRNI-----------D 169
T + + ++ ++ N S + +L+ L+ +
Sbjct: 164 TWVALDVCLSYKVQCKMDFK------IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 170 EHANEDPQVVNSWVCKHRGEAIAREY 195
+H++ ++S + R ++ Y
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPY 243
Score = 33.3 bits (75), Expect = 0.086
Identities = 40/247 (16%), Positives = 79/247 (31%), Gaps = 31/247 (12%)
Query: 12 LLLIGDSGVGKTC----VL--FRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
+L+ G G GKT V ++ F + +TV +K+ QI D
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-DP 211
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI--DEHANE-DVEKMILGK 122
R + R + + K ++N L L N+ + N ++ IL
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 123 TKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW 182
T+ + TT++ +T ++ +LK+L + + P+
Sbjct: 272 TRFKQVTDFLSAATTTHIS---LDHHSMTLTPDEVKSLLLKYL-DCR--PQDLPRE---- 321
Query: 183 VCKHRGEAIA------REYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEA--- 233
V ++ R+ + + N + IE + + + R +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 234 -PDRVTI 239
P I
Sbjct: 381 FPPSAHI 387
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 37.0 bits (85), Expect = 0.004
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFIS--------TIGIDFKIKTVDLKGKKIK 59
F F +L +G++G+GK+ D FNT F + + + ++K
Sbjct: 41 FCFNILCVGETGLGKS----TLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLK 96
Query: 60 LQIWDTAG 67
L I T G
Sbjct: 97 LTIVSTVG 104
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 36.7 bits (84), Expect = 0.005
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 8 FLFKLLLIGDSGVGKT---------CVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKI 58
F F L+++G+SG+GK+ + T+ I+ ++ +G K+
Sbjct: 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 59 KLQIWDTAGQERFHTITTSY 78
+L + DT G +
Sbjct: 77 RLTVVDTPGYGDAINCRDCF 96
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 34.7 bits (79), Expect = 0.019
Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 35/143 (24%)
Query: 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFIS------------TIGIDFKIKTVDLKG 55
F F L+++G+SG+GK+ + F T S T+ ++ + G
Sbjct: 7 FEFTLMVVGESGLGKST----LINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG 62
Query: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDV 115
++ L I DT G + N + ++ ++ + E
Sbjct: 63 VQLLLTIVDTPGFG-------------------DAVDNSNCWQPVIDYIDSKFEDYLNAE 103
Query: 116 EKMILGKTKDTAGQERFHTITTS 138
++ + D Q + I S
Sbjct: 104 SRVNRRQMPDNRVQCCLYFIAPS 126
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 31.7 bits (71), Expect = 0.19
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 16/72 (22%)
Query: 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTI----------GIDFKIKTVDL--KG 55
F F L+++G+SG+GK+ + F T S + + V + G
Sbjct: 30 FEFTLMVVGESGLGKST----LINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG 85
Query: 56 KKIKLQIWDTAG 67
++ L I DT G
Sbjct: 86 VQLLLTIVDTPG 97
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 30.7 bits (69), Expect = 0.39
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 11 KLLLIGDSGVGKTCVL-FRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
+L++G GVGK+ + + + + + G + + G + I DT G
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLN--IIDTPG 96
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 29.0 bits (65), Expect = 1.4
Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 11 KLLLIGDSGVGK--TC-VLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
+L++G GVGK T L + + G+ + + + G I I DT G
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIG--EQVVRVSPFQAEGLRPVMVSRTMGGFTIN--IIDTPG 93
Query: 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
++ + L+ ++ D +L ++ +D +A ++++K ++ T
Sbjct: 94 --LVEAGYVNH----QALELIKGFLVNRTIDVLL-YVDRLDVYAVDELDKQVVIAITQTF 146
Query: 128 GQE-RFHTI 135
G+E T+
Sbjct: 147 GKEIWCKTL 155
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 2.2
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 15/74 (20%)
Query: 152 ITNEKSFDNILKW-------LRNIDEHANEDPQVVNSWVCKHRGE--AIAREYGVRFMET 202
+T E ++I KW L+ +D + Q W K + + + + +E
Sbjct: 80 LTQEP--ESIRKWREEQRKRLQELDAASKVMEQ---EWREKAKKDLEEWNQRQSEQ-VEK 133
Query: 203 SAKANINIEKAFIE 216
+ N +KAF +
Sbjct: 134 NKINNRIADKAFYQ 147
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 28.4 bits (64), Expect = 2.6
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 13 LLIGDSGVGKT 23
LL+G+SGVGKT
Sbjct: 211 LLVGESGVGKT 221
>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation,
psychrophilic, cold adaptation, temperature, glycosyl
hydrolase, family 8; HET: XYP XYS; 1.2A
{Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB:
1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
Length = 405
Score = 28.2 bits (62), Expect = 3.1
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 12/102 (11%)
Query: 94 EKSFDNILK---WLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVY 150
+FDN+ + + V K K + + T S+ M ++
Sbjct: 34 NSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTEGQSW---GMTAAVML 90
Query: 151 DITNEKSFDNILKW----LRNIDEHANEDPQVVNSWVCKHRG 188
+ ++ FDN+ ++ +N D H + Q V +W K
Sbjct: 91 N--KQEEFDNLWRFAKAYQKNPDNHPDAKKQGVYAWKLKLNQ 130
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 27.4 bits (61), Expect = 3.1
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 9/54 (16%)
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDK 241
+++E ++ +F + + L D V ID+
Sbjct: 18 AAKLSKELKYPIIKG---------SSFELAKSGNEKLFEHFNKLADEDNVIIDR 62
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 26.9 bits (60), Expect = 4.1
Identities = 2/31 (6%), Positives = 8/31 (25%), Gaps = 6/31 (19%)
Query: 34 FNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
+ + + +L + L +
Sbjct: 74 WEEGLV------LPLAEEELPTATLTLTLRT 98
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP:
b.30.5.11 c.1.8.13
Length = 564
Score = 27.3 bits (60), Expect = 5.7
Identities = 3/34 (8%), Positives = 13/34 (38%)
Query: 77 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 110
YR + D++ ++ + + ++ +
Sbjct: 298 MAYRNWNKKIYALDLSKDEVLNWLFDLFSSLRKM 331
Score = 27.3 bits (60), Expect = 5.7
Identities = 3/34 (8%), Positives = 13/34 (38%)
Query: 138 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 171
YR + D++ ++ + + ++ +
Sbjct: 298 MAYRNWNKKIYALDLSKDEVLNWLFDLFSSLRKM 331
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 26.6 bits (59), Expect = 6.3
Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 6/31 (19%)
Query: 34 FNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
FN F + L K +++ +
Sbjct: 96 FNEVFW------VSMSYPALHQKTLRVDVCT 120
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel,
biosynthetic protein; 2.21A {Lactococcus lactis subsp}
SCOP: a.102.6.1 PDB: 2g02_A
Length = 409
Score = 27.1 bits (59), Expect = 6.3
Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 25/117 (21%)
Query: 66 AGQERFHTITTSYYRGAMGIML----VYDITNEKSFDN-ILKWLRNIDEHANEDVEKMIL 120
+E F + G GI+L + + N K + I ++ I +
Sbjct: 21 KNKENFDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTY------ 74
Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDI--TNEKSFDNILKWLRNIDEHANED 175
+T S Y GA GI L +++ + N+L L E+ +
Sbjct: 75 ------------GLLTGSLYSGAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVRE 119
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 26.2 bits (58), Expect = 6.7
Identities = 4/31 (12%), Positives = 12/31 (38%), Gaps = 6/31 (19%)
Query: 34 FNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
++ T ++I L + ++ +W
Sbjct: 76 YDETLR------YEIPESLLAQRTLQFSVWH 100
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism,
4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio
molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A
1viw_A*
Length = 471
Score = 26.7 bits (58), Expect = 8.1
Identities = 17/86 (19%), Positives = 30/86 (34%)
Query: 107 IDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 166
+D H N+ + K+ + ++ G IM +D T+
Sbjct: 283 VDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTTRIMSSFDFTDNDQGPPQDGSGN 342
Query: 167 NIDEHANEDPQVVNSWVCKHRGEAIA 192
I N+D N +VC+HR +
Sbjct: 343 LISPGINDDNTCSNGYVCEHRWRQVY 368
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 25.8 bits (57), Expect = 8.4
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 6/31 (19%)
Query: 34 FNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
F + F+I ++ + + + L + D
Sbjct: 83 FEERYT------FEIPFLEAQRRTLLLTVVD 107
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR
TLA SRT MES; 1.9A {Bacillus firmus}
Length = 358
Score = 26.3 bits (57), Expect = 9.5
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLF--------RFSDDAFNTTFISTIGIDFKIKTVD 52
++K +YDF L + G T ++D TF + DF++ T
Sbjct: 230 LSKDSYDFFPPLTIRNRRGTKATYSSLINMNYIDINYTDTQCRVTFEAENNFDFRLGTGK 289
Query: 53 LKGKKI 58
L+ +
Sbjct: 290 LRYTGV 295
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 26.1 bits (57), Expect = 9.8
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 11 KLLLIGDSGVGKTCVL-FRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
+++L+G +G GK+ F++ + I K + K+ +L + DT G
Sbjct: 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT-AAKSITKKCEKRSSSWKETELVVVDTPG 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.411
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,012,451
Number of extensions: 240216
Number of successful extensions: 1280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1082
Number of HSP's successfully gapped: 265
Length of query: 253
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 162
Effective length of database: 4,160,982
Effective search space: 674079084
Effective search space used: 674079084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)