RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9621
(253 letters)
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 153 bits (388), Expect = 1e-47
Identities = 129/221 (58%), Positives = 146/221 (66%), Gaps = 51/221 (23%)
Query: 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
KTYD+LFKLLLIGDSGVGKTCVLFRFS+DAFN+TFISTIGIDFKI+T++L GK+IKLQIW
Sbjct: 1 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
DTAGQERF TITT+YYRGAMGIMLVYDITNEKSFDNI W+RNI+EHA+ DVEKMILG
Sbjct: 61 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG-- 118
Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
N+ V
Sbjct: 119 -------------------------------------------------NKCDVNDKRQV 129
Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
K RGE +A +YG++FMETSAKANIN+E AF LA I K
Sbjct: 130 SKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 138 bits (348), Expect = 1e-41
Identities = 93/216 (43%), Positives = 129/216 (59%), Gaps = 52/216 (24%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
+ K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KLQIWDTAGQ
Sbjct: 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
ERF TITT+YYRGAMGI+LVYDIT+E++F NI +W + ++EHAN++ + +++G D
Sbjct: 62 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD--- 118
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
++ +
Sbjct: 119 ---------------------------------METRVVTADQG---------------- 129
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
EA+A+E G+ F+E+SAK + N+ + F LA I +K
Sbjct: 130 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 138 bits (347), Expect = 2e-41
Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 51/219 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YDFLFK++LIG++GVGKTC++ RF+ F +TIG+DF IKTV++ G+K+KLQIWDT
Sbjct: 2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF +IT SYYR A ++L YDIT E+SF + +WLR I+++A+ V +++G
Sbjct: 62 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG---- 117
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
N+ V +
Sbjct: 118 -----------------------------------------------NKIDLAERREVSQ 130
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
R E + + ++ETSAK + N+EK F++LA + +
Sbjct: 131 QRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 133 bits (334), Expect = 3e-39
Identities = 95/241 (39%), Positives = 131/241 (54%), Gaps = 56/241 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFKLLLIG+SGVGK+C+L RFSDD + +ISTIG+DFKIKTV+L GK +KLQIWDT
Sbjct: 3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF TIT+SYYRG+ GI++VYD+T+++SF+ + WL+ ID +A V K+++G
Sbjct: 63 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG---- 118
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
N+ V
Sbjct: 119 -----------------------------------------------NKCDLKDKRVVEY 131
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDR 245
+ A + F+ETSA + N+E AF+ +A I + S ++ E T KK D+
Sbjct: 132 DVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE-----TTQKKEDK 186
Query: 246 G 246
G
Sbjct: 187 G 187
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 130 bits (328), Expect = 1e-38
Identities = 90/218 (41%), Positives = 121/218 (55%), Gaps = 52/218 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWD 64
YD FK++L+GDSGVGKTC+L RF D AF TFIST+GIDF+ K +D+ G K+KLQ+WD
Sbjct: 3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 62
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
TAGQERF ++T +YYR A ++L+YD+TN+ SFDNI WL I E+A DV M+LG
Sbjct: 63 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 122
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
D+A + V
Sbjct: 123 DSAHER---------------------------------------------------VVK 131
Query: 185 KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
+ GE +A+EYG+ FMETSAK +N++ AF +A +
Sbjct: 132 REDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 129 bits (325), Expect = 3e-38
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 51/217 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
Y ++FK ++IGD GVGK+C+L +F++ F TIG++F + +++ G+KIKLQIWDT
Sbjct: 1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQERF +T SYYRGA G ++VYDIT +++++ WL + N + +++G D
Sbjct: 61 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
V
Sbjct: 121 ---------------------------------------------------LEAQRDVTY 129
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
+ A E G+ F+E SAK N+E AF+E A IY
Sbjct: 130 EEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 128 bits (322), Expect = 9e-38
Identities = 82/219 (37%), Positives = 117/219 (53%), Gaps = 51/219 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
+D++FK+L+IG+S VGKT LFR++DD+F F+ST+GIDFK+KT+ K+IKLQIWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQER+ TITT+YYRGAMG +L+YDITNE+SF+ + W I ++ ++ + +++G
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG---- 117
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
N+ V
Sbjct: 118 -----------------------------------------------NKCDMEDERVVSS 130
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
RG +A G F E SAK NIN+++ F L I +K
Sbjct: 131 ERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 123 bits (309), Expect = 8e-36
Identities = 71/220 (32%), Positives = 110/220 (50%), Gaps = 51/220 (23%)
Query: 5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
TYDFLFK L+IG++G GK+C+L +F + F TIG++F K +++ GK +KLQIWD
Sbjct: 1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 60
Query: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
TAGQERF ++T SYYRGA G +LVYDIT+ ++++ + WL + A++++ ++ G
Sbjct: 61 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG--- 117
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
N+ + V
Sbjct: 118 ------------------------------------------------NKKDLDADREVT 129
Query: 185 KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
A+E + F+ETSA N+E+AF++ A I +K
Sbjct: 130 FLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 169
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 121 bits (303), Expect = 1e-34
Identities = 72/229 (31%), Positives = 111/229 (48%), Gaps = 60/229 (26%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV----------DLKG 55
YD+L KLL +GDSGVGKT L+R++D+ FN FI+T+GIDF+ K V K
Sbjct: 2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61
Query: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDV 115
K+ LQ+WDTAGQERF ++TT+++R AMG +L++D+T+++SF N+ W+ + +A +
Sbjct: 62 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121
Query: 116 EKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 175
I+L+ N+
Sbjct: 122 ----------------------------PDIVLI----------------------GNKA 131
Query: 176 PQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
V + + +A +YG+ + ETSA N+EKA L I +
Sbjct: 132 DLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 119 bits (299), Expect = 3e-34
Identities = 75/221 (33%), Positives = 114/221 (51%), Gaps = 51/221 (23%)
Query: 6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
YD+LFK++LIGDSGVGK+ +L RF+ + FN STIG++F +++ + GK IK QIWDT
Sbjct: 1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
AGQER+ IT++YYRGA+G +LVYDI +++N+ +WL+ + +HA+ ++ M++G
Sbjct: 61 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG---- 116
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
N+ V
Sbjct: 117 -----------------------------------------------NKSDLRHLRAVPT 129
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
A A + + F+ETSA + N+E+AF + T IY S
Sbjct: 130 DEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS 170
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 118 bits (296), Expect = 9e-34
Identities = 71/213 (33%), Positives = 102/213 (47%), Gaps = 51/213 (23%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K+L+IG+SGVGK+ +L RF+DD F+ +TIG+DFK+KT+ + G K KL IWDTAGQE
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
RF T+T SYYRGA G++LVYD+T +F + WL ++ + + +L K
Sbjct: 68 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNK----- 122
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
N V ++ G
Sbjct: 123 ----------------------------------------------IDKENREVDRNEGL 136
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIY 222
AR++ + F+E SAK ++ AF EL I
Sbjct: 137 KFARKHSMLFIEASAKTCDGVQCAFEELVEKII 169
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 116 bits (292), Expect = 3e-33
Identities = 81/217 (37%), Positives = 115/217 (52%), Gaps = 51/217 (23%)
Query: 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
+LFK ++IGD+GVGK+C+L +F+D F TIG++F + V++ GK+IKLQIWDTAG
Sbjct: 2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61
Query: 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
QE F +IT SYYRGA G +LVYDIT ++F+++ WL + +H++ ++ M++G D
Sbjct: 62 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD-- 119
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
V +
Sbjct: 120 -------------------------------------------------LESRRDVKREE 130
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
GEA ARE+G+ FMETSAK N+E+AFI A IY K
Sbjct: 131 GEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 167
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 111 bits (277), Expect = 6e-31
Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 41/222 (18%)
Query: 1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
MA + K +++GD VGKTC+L +++DAF ++ T+ D +V + GK+ L
Sbjct: 1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 59
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
++DTAGQE + + Y ++ + + N SF N+ + + +V +++
Sbjct: 60 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 119
Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
G D LR+ + +
Sbjct: 120 GTQID---------------------------------------LRDDPKTLARLNDMKE 140
Query: 181 SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+C +G+ +A+E G ++E SA ++ F E AI
Sbjct: 141 KPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 109 bits (273), Expect = 1e-30
Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 51/216 (23%)
Query: 8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
+ FK++L+G+ VGKT ++ R+ ++ FN I+T+G F K +++ GK++ L IWDTAG
Sbjct: 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61
Query: 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
QERFH + YYR + G +LVYDIT+E SF + W++ + + ++ I+G
Sbjct: 62 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG------ 115
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
N+ V
Sbjct: 116 ---------------------------------------------NKIDLEKERHVSIQE 130
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223
E+ A G + TSAK N IE+ F++L + +
Sbjct: 131 AESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 107 bits (268), Expect = 7e-30
Identities = 70/212 (33%), Positives = 102/212 (48%), Gaps = 51/212 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+ +G+ VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + I+LQ+WDTAGQE
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
RF ++ SY R + ++VYDITN SF KW+ ++ DV M++G D A +
Sbjct: 61 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
V GE
Sbjct: 121 R---------------------------------------------------QVSIEEGE 129
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
A+E V F+ETSAKA N+++ F +A A+
Sbjct: 130 RKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 100 bits (249), Expect = 5e-27
Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 51/213 (23%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+G+S VGK+ ++ RF F+ STIG F +TV L +K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
R+H++ YYRGA ++VYDITNE+SF W++ + A+ ++ + G
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 118
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
N+ V +
Sbjct: 119 -------------------------------------------NKADLANKRAVDFQEAQ 135
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIY 222
+ A + + FMETSAK ++N+ + F+ +A +
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 100 bits (248), Expect = 9e-27
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 49/214 (22%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
LFK++L+GD GVGK+ ++ R+ + F+T TIG++F K +++ G + +QIWDTAGQ
Sbjct: 6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 65
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
ERF ++ T +YRG+ +L + + + +SF N+ W + +A+ +
Sbjct: 66 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF--------- 116
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
+ ID V
Sbjct: 117 -------------------------------PFVILGNKIDIS--------ERQVSTEEA 137
Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+A R+ G + ETSAK N+ AF E +
Sbjct: 138 QAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 100 bits (248), Expect = 1e-26
Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 41/217 (18%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ + F + ++ T+ D TV + G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y ++ + + + SF+N+ + H +++G D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID---- 118
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
LR+ + + + E
Sbjct: 119 -----------------------------------LRDDPSTIEKLAKNKQKPITPETAE 143
Query: 190 AIAREY-GVRFMETSAKANINIEKAFIELATAIYDKT 225
+AR+ V+++E SA ++ F E A +
Sbjct: 144 KLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 99.3 bits (246), Expect = 2e-26
Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 41/213 (19%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K +++GD VGKTC+L ++ +AF +I T+ D V + GK + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y ++ + + + SF+N+ H + +++G D
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD---- 120
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
LR+ + + + + + +G
Sbjct: 121 -----------------------------------LRDDKDTIEKLKEKKLTPITYPQGL 145
Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELATAI 221
A+A+E G V+++E SA ++ F E A+
Sbjct: 146 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 93.9 bits (232), Expect = 1e-24
Identities = 50/213 (23%), Positives = 81/213 (38%), Gaps = 52/213 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + + + F + TI ++ + V G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y R G + V+ I N KSF++I ++ I + D M+L K
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC---- 118
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ V + +
Sbjct: 119 -----------------------------------------------DLAARTVESRQAQ 131
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIY 222
+AR YG+ ++ETSAK +E AF L I
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 92.4 bits (228), Expect = 8e-24
Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 41/213 (19%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
KL+++GD GKTC+L S D F ++ T+ + + +++ GK+++L +WDTAG E
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + Y I++ + I + S +NI + +H +V +++G KD
Sbjct: 62 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL--- 118
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
RN + E ++ V G
Sbjct: 119 ------------------------------------RNDEHTRRELAKMKQEPVKPEEGR 142
Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELATAI 221
+A G +ME SAK + + F A
Sbjct: 143 DMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 91.9 bits (227), Expect = 1e-23
Identities = 50/217 (23%), Positives = 85/217 (39%), Gaps = 53/217 (24%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K++++G GVGK+ + +F D F + T D K V L G+++++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTA 127
E + I +Y+R G + V+ IT +SF + I +E+V +++G
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG------ 116
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
N+ V
Sbjct: 117 ---------------------------------------------NKSDLEDKRQVSVEE 131
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+ A ++ V ++ETSAK N++K F +L I +
Sbjct: 132 AKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 91.6 bits (226), Expect = 1e-23
Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 54/214 (25%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
+FK+++IGDS VGKTC+ +RF F +TIG+DF+ + VD+ G++IK+Q+WDTAGQ
Sbjct: 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61
Query: 69 ERFHTI-TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
ERF YYR ++ VYD+TN SF ++ W+ +H + IL K
Sbjct: 62 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
V
Sbjct: 122 RSAI--------------------------------------------------QVPTDL 131
Query: 188 GEAIAREYGVRFMETSAKA---NINIEKAFIELA 218
+ A + + ETSAK N ++E F+ LA
Sbjct: 132 AQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 90.9 bits (224), Expect = 3e-23
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 47/216 (21%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K++++GDSGVGKT ++ ++ + F+ + +TIG DF K V + + + +QIWDTAGQ
Sbjct: 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
ERF ++ ++YRGA +LV+D+T +F + W A+ +
Sbjct: 62 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-------- 113
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
+++ N+ K
Sbjct: 114 -----------------FVVL----------------------GNKIDLENRQVATKRAQ 134
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+ + + ETSAK IN+E+AF +A +
Sbjct: 135 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 170
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 90.1 bits (222), Expect = 6e-23
Identities = 56/213 (26%), Positives = 85/213 (39%), Gaps = 51/213 (23%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L+++G GVGK+ + +F F T + TI D K + + +L I DTAGQE
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
F + Y R G +LV+ +T+ SF+ I K+ R I + D MIL K
Sbjct: 65 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+R T G+
Sbjct: 125 QRQVTQ--------------------------------------------------EEGQ 134
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIY 222
+AR+ V +ME SAK +N+++AF EL I
Sbjct: 135 QLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 89.6 bits (221), Expect = 8e-23
Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 51/213 (23%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+K++++G GVGK+ + +F F + TI DF K +++ L+I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+F ++ Y + G +LVY + N++SF +I I +
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE--------------- 107
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ ++LV N+ V G
Sbjct: 108 -------------KVPVILV----------------------GNKVDLESEREVSSSEGR 132
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIY 222
A+A E+G FMETSAK+ +++ F E+ +
Sbjct: 133 ALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 88.9 bits (219), Expect = 1e-22
Identities = 60/212 (28%), Positives = 90/212 (42%), Gaps = 51/212 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K+ L+GD+GVGK+ +++RF +D+F+ TIG F KTV + + K IWDTAG E
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
RF + YYRG+ ++VYDIT E++F + W+R + +H + I
Sbjct: 65 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAI---------- 114
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
N+ V + +
Sbjct: 115 -----------------------------------------AGNKCDLTDVREVMERDAK 133
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
A F+ETSAK INI + FIE++ I
Sbjct: 134 DYADSIHAIFVETSAKNAININELFIEISRRI 165
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 88.9 bits (219), Expect = 1e-22
Identities = 51/215 (23%), Positives = 86/215 (40%), Gaps = 54/215 (25%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++G GVGK+ + +F F + TI D K V++ ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAG 128
+F + Y + G LVY IT + +F+++ I EDV +++G D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD--- 119
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
V K +G
Sbjct: 120 ------------------------------------------------LEDERVVGKEQG 131
Query: 189 EAIAREY-GVRFMETSAKANINIEKAFIELATAIY 222
+ +AR++ F+E+SAK+ IN+ + F +L I
Sbjct: 132 QNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 88.2 bits (217), Expect = 2e-22
Identities = 58/214 (27%), Positives = 91/214 (42%), Gaps = 48/214 (22%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KL+L+G++ VGK+ ++ RF + F TIG F + V + +K +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
F ++ YYR A ++VYD+T +SF W++ + E A++D+ ++G D
Sbjct: 65 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDM---- 120
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
+ V + GE
Sbjct: 121 --------------------------------------------LQEGGERKVAREEGEK 136
Query: 191 IAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
+A E G+ F ETSAK N+ F+ + I K
Sbjct: 137 LAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 87.4 bits (215), Expect = 5e-22
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 51/216 (23%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
KL+++G GVGK+ + +F F + + D K + G +L I DTAGQ
Sbjct: 6 THKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTAGQ 64
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
E F + Y R G +LV+ I + +SF+ + K I + D ++L K
Sbjct: 65 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK---- 120
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
V +
Sbjct: 121 ----------------------------------------------ADLESQRQVPRSEA 134
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
A + V + E SAK +N+++AF +L A+
Sbjct: 135 SAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 86.3 bits (212), Expect = 2e-21
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 46/217 (21%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKI-KLQIWDTAG 67
+ K++++GDSGVGKT ++ R+ +D ++ + +TIG DF K V + G K+ +Q+WDTAG
Sbjct: 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61
Query: 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
QERF ++ ++YRGA +LVYD+TN SF+NI W HAN + +
Sbjct: 62 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET--------- 112
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
+++ + + +E + + K
Sbjct: 113 ----------------FPFVILGNK-------------IDAEESKKIVSEKSAQELAKSL 143
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
G+ + TSAK IN++ AF E+A + +
Sbjct: 144 GD-------IPLFLTSAKNAINVDTAFEEIARSALQQ 173
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 85.5 bits (210), Expect = 2e-21
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 52/216 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+KL+++GD GVGK+ + +F F + TI D +K ++ + L + DTAGQE
Sbjct: 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
F + Y R G ++VY +T++ SF+++ ++ + I + + MIL K
Sbjct: 64 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
R V + +G+
Sbjct: 124 LR--------------------------------------------------KVTRDQGK 133
Query: 190 AIAREYGVRFMETSAK-ANINIEKAFIELATAIYDK 224
+A +Y + ++ETSAK +N++K F +L I +
Sbjct: 134 EMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 82.4 bits (202), Expect = 5e-20
Identities = 40/216 (18%), Positives = 87/216 (40%), Gaps = 42/216 (19%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K++++GDS GKT +L F+ D F ++ T+ + + ++ ++I+L +WDT+G
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
+ + Y + +++ +DI+ ++ D++LK + + + + +++G D
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD----- 117
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
LR E + V +G
Sbjct: 118 ----------------------------------LRTDVSTLVELSNHRQTPVSYDQGAN 143
Query: 191 IAREYG-VRFMETSAKANIN-IEKAFIELATAIYDK 224
+A++ G ++E SA + N + F A +K
Sbjct: 144 MAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 81.9 bits (201), Expect = 6e-20
Identities = 32/212 (15%), Positives = 64/212 (30%), Gaps = 52/212 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G GKT +L++ TT I T+G + + T K +K +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTY----KNVKFNVWDVGGQD 67
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + YY G G++ V D + D + L I +++ K
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ---- 123
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ + + + G
Sbjct: 124 -------------------------------------------DLPDAMKPHEIQEKLGL 140
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
R+ + A + + + L +
Sbjct: 141 TRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 81.9 bits (201), Expect = 7e-20
Identities = 35/215 (16%), Positives = 64/215 (29%), Gaps = 52/215 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G G GKT +L+R TT TIG + + + K +KL +WD GQ
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFNVETLSY----KNLKLNVWDLGGQT 72
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
YY ++ V D T++ K L + + +++ K
Sbjct: 73 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD--- 129
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ E + E
Sbjct: 130 --------------------------------QPGALSASEVSKE------------LNL 145
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
++ + +SA I + L I ++
Sbjct: 146 VELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 81.7 bits (200), Expect = 8e-20
Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 52/212 (24%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
K++++G+ VGK+ ++ R+ F + TIG+DF + + + + ++L +WDTAGQE
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
F IT +YYRGA +LV+ T+ +SF+ I W +
Sbjct: 64 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV------------------- 104
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
+I L +D + N
Sbjct: 105 ----------------------------GDIPTALVQNKIDLLDDSCIKNEEAEGL---- 132
Query: 191 IAREYGVRFMETSAKANINIEKAFIELATAIY 222
A+ +RF TS K ++N+ + F LA
Sbjct: 133 -AKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 79.3 bits (194), Expect = 5e-19
Identities = 25/211 (11%), Positives = 58/211 (27%), Gaps = 52/211 (24%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
++L++G GKT +L++ T ++ K I +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
+ Y++ G++ V D + + + + L + +++ K
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ----- 111
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
+A + + G
Sbjct: 112 -------------------------------------DLPNAMNA-----AEITDKLGLH 129
Query: 191 IAREYGVRFMETSAKANINIEKAFIELATAI 221
R T A + + + L+ +
Sbjct: 130 SLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 80.2 bits (197), Expect = 7e-19
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 8/111 (7%)
Query: 4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
+ Y +LLL+G GK+ ++ + + T GI + K+ ++
Sbjct: 1 QVYRATHRLLLLGAGESGKSTIVKQMRIL----HVVLTSGIFET----KFQVDKVNFHMF 52
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 114
D GQ + I+ V ++ + E N
Sbjct: 53 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLF 103
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 77.7 bits (190), Expect = 2e-18
Identities = 48/216 (22%), Positives = 78/216 (36%), Gaps = 50/216 (23%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+++ + G GVGK+ ++ RF F ++I T+ ++ LQI DT G
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISC-DKSICTLQITDTTGSH 61
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+F + +LVY IT+ +S + + I E +
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES------------- 108
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ IMLV N+ + + V E
Sbjct: 109 --------------IPIMLV----------------------GNKCDESPSREVQSSEAE 132
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225
A+AR + FMETSAK N N+++ F EL +T
Sbjct: 133 ALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 168
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 75.8 bits (185), Expect = 1e-17
Identities = 44/216 (20%), Positives = 72/216 (33%), Gaps = 53/216 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
KL + G +GVGK+ ++ RF F + T+ ++ + + + ++I DT +
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATI-DDEVVSMEILDT-AGQ 60
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ R G +LVYDIT+ SF+ +L +DE +IL
Sbjct: 61 EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV-------- 112
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
N+ + V GE
Sbjct: 113 ------------------------------------------GNKADLDHSRQVSTEEGE 130
Query: 190 AIAREYGVRFMETSAKAN-INIEKAFIELATAIYDK 224
+A E F E SA NI + F EL + +
Sbjct: 131 KLATELACAFYECSACTGEGNITEIFYELCREVRRR 166
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 72.7 bits (177), Expect = 3e-16
Identities = 25/212 (11%), Positives = 55/212 (25%), Gaps = 20/212 (9%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
KLLL+G GK+ + + + + T GI + + ++ D GQ
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHGSG--VPTTGIIEYP----FDLQSVIFRMVDVGGQR 56
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ IM + ++ ++E +
Sbjct: 57 SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII----------T 106
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ ++ +L I +++ + D + +
Sbjct: 107 YPWFQNSSVILFLNKKDLLEEKIMYS----HLVDYFPEYDGPQRDAQAAREFILKMFVDL 162
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
+ + T A NI F + I
Sbjct: 163 NPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 194
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 71.7 bits (174), Expect = 4e-16
Identities = 40/212 (18%), Positives = 76/212 (35%), Gaps = 51/212 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K+ ++G VGK+ + +F + F ++ TI + K + + G++ LQ+ DTAGQ+
Sbjct: 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ +Y G +LVY +T+ KSF+ I + + + ++L
Sbjct: 64 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML--------- 114
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
N+ + + G+
Sbjct: 115 -----------------------------------------VGNKKDLHMERVISYEEGK 133
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
A+A + F+E+SAK N F +
Sbjct: 134 ALAESWNAAFLESSAKENQTAVDVFRRIILEA 165
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 71.3 bits (173), Expect = 5e-16
Identities = 31/208 (14%), Positives = 57/208 (27%), Gaps = 45/208 (21%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
KLL +G GKT +L +D +T+ + + +L IK +D G +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56
Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
+ Y+ GI+ + D + + FD L + A ++ K
Sbjct: 57 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNK------ 110
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
+ E + + +
Sbjct: 111 -----------------------------IDAPNAVSEAELRSALGL-----LNTTGSQR 136
Query: 191 IAREYGVRFMETSAKANINIEKAFIELA 218
I + V S +AF L+
Sbjct: 137 IEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 69.7 bits (169), Expect = 2e-15
Identities = 45/217 (20%), Positives = 80/217 (36%), Gaps = 54/217 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
FKL+L+GD G GKT + R F +++T+G++ IK +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+F + YY A ++++D+T+ ++ N+ W R++ + K
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNK------- 116
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+D + + K
Sbjct: 117 --------------------------------------VDIKDRKVKAKSIVFHRKK--- 135
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
+++ + SAK+N N EK F+ LA + +
Sbjct: 136 ------NLQYYDISAKSNYNFEKPFLWLARKLIGDPN 166
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 69.3 bits (168), Expect = 4e-15
Identities = 26/212 (12%), Positives = 63/212 (29%), Gaps = 52/212 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K++++G GKT +L++FS + T + +I + + +WD GQE
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-----TRFLMWDIGGQE 70
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ +YY +++V D T+ + + L + H + ++
Sbjct: 71 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL---------- 120
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
D+ + I ++L
Sbjct: 121 ---------------IFANKQDVKECMTVAEISQFL----------------------KL 143
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
+++ A + + + + +
Sbjct: 144 TSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 68.9 bits (167), Expect = 4e-15
Identities = 33/215 (15%), Positives = 66/215 (30%), Gaps = 52/215 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+LL++G GKT +L +F+ + + TI L+ + KL IWD GQ+
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGE-----DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ +Y+ G++ V D + + + + L+++ +++
Sbjct: 58 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLI--------- 108
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
D+ S + I + L
Sbjct: 109 ----------------FANKQDLPGALSCNAIQEAL----------------------EL 130
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
R + R SA ++ L I +
Sbjct: 131 DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 69.5 bits (169), Expect = 4e-15
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 7/105 (6%)
Query: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
L K+LL+G GK+ L + T GI D + K + ++ D GQ
Sbjct: 2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY----DFEIKNVPFKMVDVGGQ 54
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE 113
+ I+ + + + + E N
Sbjct: 55 RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNI 99
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 67.8 bits (164), Expect = 1e-14
Identities = 34/215 (15%), Positives = 68/215 (31%), Gaps = 52/215 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+K+LL+G GVGK+ + F + +++ + G++ L ++D Q+
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGVEDGPE--AEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ ++VY +T++ SF+ + + D +IL K +
Sbjct: 60 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
R G
Sbjct: 120 SREV--------------------------------------------------SVDEGR 129
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
A A + +F+ETSA + N++ F + I +
Sbjct: 130 ACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 66.9 bits (162), Expect = 3e-14
Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 52/215 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+L ++GD+ GK+ ++ RF ++ + + K + + G+ + I + AG
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ A ++ V+ + +E SF + + + E + L
Sbjct: 64 DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL--------- 109
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
R + +
Sbjct: 110 ----------------------ALVGTQDRISASSPRVVGDARAR--------------A 133
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
A + ET A +N+++ F E+A +
Sbjct: 134 LCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTL 168
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 66.1 bits (160), Expect = 5e-14
Identities = 33/219 (15%), Positives = 63/219 (28%), Gaps = 52/219 (23%)
Query: 3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQI 62
K D ++LL+G GKT +L + + + + T G + K + KL +
Sbjct: 10 KSAPDQEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKSVQS----QGFKLNV 64
Query: 63 WDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGK 122
WD GQ + SY+ ++ V D + K F+ + L + E +++
Sbjct: 65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124
Query: 123 TKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW 182
K D+ I + L
Sbjct: 125 NK-------------------------QDLLTAAPASEIAEGL----------------- 142
Query: 183 VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
R+ + SA ++ + +
Sbjct: 143 -----NLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 64.3 bits (155), Expect = 3e-13
Identities = 21/212 (9%), Positives = 48/212 (22%), Gaps = 40/212 (18%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
KL+ +G GKT +L DD + ++ + +D G
Sbjct: 14 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-----MTFTTFDLGGHI 68
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ + +Y GI+ + D + + + L ++ +++ K
Sbjct: 69 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNK----- 123
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
+ + +
Sbjct: 124 ------------------------------IDRPEAISEERLREMFGLYGQTTGKGSVSL 153
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
+ S + F +A I
Sbjct: 154 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 62.7 bits (151), Expect = 1e-12
Identities = 26/206 (12%), Positives = 56/206 (27%), Gaps = 25/206 (12%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
KLLL+G GK+ ++ + T I FK +++D GQ
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHF---------KMFDVGGQR 53
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
+ G I+ +++ + + + E
Sbjct: 54 SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC----------N 103
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
++ T T+ + I ++ +N + C+
Sbjct: 104 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEY-----AGSNTYEEAAAYIQCQFEDL 158
Query: 190 AIAREYGVRF-METSAKANINIEKAF 214
++ + T A N++ F
Sbjct: 159 NKRKDTKEIYTHFTCATDTKNVQFVF 184
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 59.4 bits (142), Expect = 1e-11
Identities = 31/219 (14%), Positives = 68/219 (31%), Gaps = 50/219 (22%)
Query: 7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
+ ++++LIG+ GVGK+ + F+ + + +G D +T+ + G+ + + D
Sbjct: 1 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60
Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
+ + + + + + K + + I
Sbjct: 61 WENKGENEWLHDHCM--QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP----- 113
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
I+LV N+ V V
Sbjct: 114 --------------------IILV----------------------GNKSDLVRCREVSV 131
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
G A A + +F+ETSA N+++ F + + +
Sbjct: 132 SEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 59.0 bits (141), Expect = 2e-11
Identities = 30/215 (13%), Positives = 56/215 (26%), Gaps = 52/215 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
++L++G G GKT +L+R TT + K +K Q+WD G
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTYKNLKFQVWDLGGLT 60
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
YY ++ V D + L + E +++
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVV--------- 111
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
D+ E G
Sbjct: 112 ----------------FANKQDMEQA----------MTSSEM------------ANSLGL 133
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
++ + +TSA +++A L + +
Sbjct: 134 PALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 57.4 bits (137), Expect = 5e-11
Identities = 31/212 (14%), Positives = 66/212 (31%), Gaps = 51/212 (24%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
+L L+G GKT + + FN I T+G + + + + +++WD GQ
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR----KITKGNVTIKLWDIGGQP 58
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
RF ++ Y RG I+ + D +++ + L N+ + +++ K
Sbjct: 59 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK----- 113
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
D+ +++ +
Sbjct: 114 --------------------RDLPGALDEKELIEKM----------------------NL 131
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
+ ++ + S K NI+ L
Sbjct: 132 SAIQDREICCYSISCKEKDNIDITLQWLIQHS 163
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 57.7 bits (138), Expect = 8e-11
Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 2/111 (1%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
+L +G GKT + R + T ++I I V+ I +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 71 FHTITTSYYRGAMGIMLVYDITN-EKSFDNILKWLRNIDEHANEDVEKMIL 120
+ + A ++ V D ++ ++ ++L + + L
Sbjct: 61 RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSL 111
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 46.9 bits (110), Expect = 4e-07
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 7/111 (6%)
Query: 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71
+++ G GKT +L + + T+ + D G + L + + R+
Sbjct: 6 IIIAGPQNSGKTSLLTLLT----TDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61
Query: 72 HT---ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMI 119
+ T I +V + K ++L +I E I
Sbjct: 62 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 112
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 29.8 bits (65), Expect = 0.26
Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 12/233 (5%)
Query: 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71
L+G G GKT L + + + T + I+ I + + R
Sbjct: 46 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRG 105
Query: 72 HT-------ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
+ + + + LV D + D + ++R E ++ L
Sbjct: 106 LSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVG 165
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
+T G I ++ FD +L + + ++
Sbjct: 166 HNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQI-FDILLDRAKAGLAEGSYSEDILQMIAD 224
Query: 185 KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRV 237
+ + A + ++ + D ++ V
Sbjct: 225 ITGAQTPLD----TNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 273
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 28.9 bits (63), Expect = 0.37
Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 1/109 (0%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
K+++ G GK+ +L + G + + + L I DTAG
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKM 118
+ D + E E + ++
Sbjct: 61 EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL 109
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 29.2 bits (65), Expect = 0.37
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 5/100 (5%)
Query: 11 KLLLIGDSGVGKTCVLF---RFSDDAFNTTFISTIGIDFKIKTVDLKGKKIK-LQIWDTA 66
+ L++ GKT +L + + + ID + + V + +K + T
Sbjct: 45 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTF 104
Query: 67 GQERFHTITTSYYRGAMGIMLV-YDITNEKSFDNILKWLR 105
+ + + LV + D+I + R
Sbjct: 105 DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 144
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 28.5 bits (63), Expect = 0.85
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 13 LLIGDSGVGKTCV 25
+LIG+ GVGKT +
Sbjct: 47 VLIGEPGVGKTAI 59
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 28.1 bits (61), Expect = 0.90
Identities = 20/163 (12%), Positives = 45/163 (27%), Gaps = 10/163 (6%)
Query: 14 LIGDSGVGKTCVLFRFS-------DDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
L+G GK+ +L + F T +G+ + I I +
Sbjct: 6 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP-NLGVVEVSEEERFTLADIPGIIEGAS 64
Query: 67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK-D 125
+ + ++ V D +E ++ K D
Sbjct: 65 EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168
+E + + R + ++ V +T + + L +
Sbjct: 125 LLEEEAVKALADALAREGLAVLPVSALTGA-GLPALKEALHAL 166
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 28.0 bits (61), Expect = 1.0
Identities = 27/205 (13%), Positives = 54/205 (26%), Gaps = 2/205 (0%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
AK + L +LL G G+GKT + T T G +K D+ L+
Sbjct: 28 AKMRGEVLDHVLLAGPPGLGKTTLA-HIIASELQTNIHVTSGPVL-VKQGDMAAILTSLE 85
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
D + H + + + + I K +R + G
Sbjct: 86 RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG 145
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
+ +Y ++ + + I + + P++
Sbjct: 146 LLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIR 205
Query: 182 WVCKHRGEAIAREYGVRFMETSAKA 206
+ R + + K
Sbjct: 206 LTKRVRDMLTVVKADRINTDIVLKT 230
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 27.0 bits (59), Expect = 2.2
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 4/118 (3%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIK--TVDLKGKKIKLQIWDTAG 67
+ + G++G GK+ + + G+ + WD G
Sbjct: 57 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116
Query: 68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
+ +Y YD S K +I + + ++ +TK
Sbjct: 117 IGSTNFPPDTYL--EKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKV 172
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.1 bits (59), Expect = 2.4
Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGI 146
L+Y + + + I+ + + E A+ + + I+ K A E++ T Y + +
Sbjct: 384 LLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILA--EKYAVDYTWYVDTILNL 441
Query: 147 MLVYDITNEKSFDNILKWLRNI 168
+ I + + + + I
Sbjct: 442 I---RIAGDYVSEEVWYRVIQI 460
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 26.7 bits (58), Expect = 2.6
Identities = 14/125 (11%), Positives = 34/125 (27%), Gaps = 11/125 (8%)
Query: 10 FKLLLIGDSGVGKTCVL--------FRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
+L++G GVGK+ + S + T+ L
Sbjct: 33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTL-NIIDTPGLI 91
Query: 62 IWDTAGQERFHTITTSYY-RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEK-MI 119
+ I + + ++ V + + + + I + + + I
Sbjct: 92 EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAI 151
Query: 120 LGKTK 124
+ T
Sbjct: 152 VALTH 156
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 26.5 bits (58), Expect = 2.8
Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 14/142 (9%)
Query: 43 GIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD------------ 90
GI V+ + K D G + + G +LV
Sbjct: 52 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREH 111
Query: 91 --ITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIML 148
+ + I+ ++ +D + ++ ++ + +D Q F RG+ + L
Sbjct: 112 ILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLAL 171
Query: 149 VYDITNEKSFDNILKWLRNIDE 170
N K+ +W+ I E
Sbjct: 172 EQMHRNPKTRRGENEWVDKIWE 193
>d2cz4a1 d.58.5.1 (A:1-100) Hypothetical protein TTHA0516 {Thermus
thermophilus [TaxId: 274]}
Length = 100
Score = 25.5 bits (56), Expect = 3.0
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 47 KIKTVDLKGKKIKLQIW--DTAGQERFHTITTSYYRGAMGIMLVYDI 91
I++VD +G+ I+L+ + + Y+ I V ++
Sbjct: 45 GIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFPHYAVIAYVENV 91
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.1 bits (56), Expect = 4.0
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 11 KLLLIGDSGVGKTCVL 26
K+++ G+ GVGKT ++
Sbjct: 2 KIIITGEPGVGKTTLV 17
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 25.9 bits (57), Expect = 4.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 11 KLLLIGDSGVGKTCVL 26
K+ L G +GVGKT ++
Sbjct: 70 KIGLFGGAGVGKTVLI 85
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 25.9 bits (57), Expect = 4.5
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 11 KLLLIGDSGVGKTCVL---------FRFSDDAFNTTFISTIGIDFKIKTV 51
+ L+IGD GKT + F D + + I K TV
Sbjct: 70 RELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTV 119
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 25.8 bits (55), Expect = 4.9
Identities = 17/169 (10%), Positives = 36/169 (21%), Gaps = 14/169 (8%)
Query: 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71
+ L G GK + N ++ + ++ D +
Sbjct: 9 IFLTGYMNSGKDAIARALQ-VTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQR 67
Query: 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL----------G 121
+ A ++ I + + + L
Sbjct: 68 IAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGI 127
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITN---EKSFDNILKWLRN 167
G+ + T Y LV D + I+ L +
Sbjct: 128 YAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHEIILVLES 176
>d2ivya1 d.58.58.1 (A:2-89) Hypothetical protein SSO1404 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 88
Score = 24.8 bits (54), Expect = 4.9
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 82 AMGIMLVYDITNEKSFDNILKWLRN 106
AM ++ YDIT++ + + ++L+
Sbjct: 1 AMLYLIFYDITDDNLRNRVAEFLKK 25
Score = 24.8 bits (54), Expect = 4.9
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 143 AMGIMLVYDITNEKSFDNILKWLRN 167
AM ++ YDIT++ + + ++L+
Sbjct: 1 AMLYLIFYDITDDNLRNRVAEFLKK 25
>d1k28a2 b.108.1.2 (A:362-584) Tail-associated lysozyme gp5,
C-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Length = 223
Score = 25.6 bits (55), Expect = 5.2
Identities = 19/177 (10%), Positives = 41/177 (23%), Gaps = 13/177 (7%)
Query: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
DT GQER+ + + G + + + ++
Sbjct: 44 DTPGQERYRLVHPT------GTYEEVSPSG-----RRTRKTVDNLYDITNADGNFLVAGD 92
Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
K T + I ++ I N V +
Sbjct: 93 KKTNVGGSEIYYNMDNRLHQIDGS--NTIFVRGDETKTVEGNGTILVKGNVTIIVEGNAD 150
Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
+G+A G + + + + + + + + TID
Sbjct: 151 ITVKGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTID 207
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 543
Score = 25.9 bits (56), Expect = 6.4
Identities = 7/60 (11%), Positives = 20/60 (33%)
Query: 134 TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR 193
++ + +G I N+ KW++ + + +D + W + +
Sbjct: 406 SVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGL 465
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 25.0 bits (54), Expect = 7.3
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 43 GIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD 90
GI V+ D G + + G +LV
Sbjct: 51 GITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVA 98
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 114
Score = 24.6 bits (53), Expect = 7.5
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 47 KIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI 100
I T+D+ G IK G+ T ++ + + +E+ + I
Sbjct: 2 TIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGI 55
>d1wzza1 a.102.1.2 (A:23-341) Probable endoglucanase CmcAX
{Acetobacter xylinus [TaxId: 28448]}
Length = 319
Score = 25.3 bits (55), Expect = 7.5
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 106
++ DT H+ Y M + SF ++ W R
Sbjct: 22 RVVDTGNGGESHSEGQGY---GMLFAASAG--DLASFQSMWMWART 62
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 25.5 bits (54), Expect = 7.6
Identities = 23/219 (10%), Positives = 54/219 (24%), Gaps = 22/219 (10%)
Query: 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71
IG G+GKT + +F+ + + + + Q +
Sbjct: 49 YGSIGRVGIGKTTLA-KFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGY 107
Query: 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER 131
++ L + + +++ + E
Sbjct: 108 PIQVRGAPA-------------LDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAED 154
Query: 132 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE-- 189
+ + D N F + +R + + PQV + K
Sbjct: 155 LY-----TLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAY 209
Query: 190 -AIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSG 227
+ + + E +EL + +Y + G
Sbjct: 210 KSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 248
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 25.0 bits (53), Expect = 8.3
Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 4/157 (2%)
Query: 2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
+K K+ ++G VGK+ + + G ++ K
Sbjct: 1 SKPEITDAIKVAIVGRPNVGKSTLFNAILNKE-RALVSPIPGTTRDPVDDEVFIDGRKYV 59
Query: 62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
DTAG R + +V I + D ++ L +D L
Sbjct: 60 FVDTAGLRRKSRVEPRTVEKYSNYRVVDSI---EKADVVVIVLDATQGITRQDQRMAGLM 116
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF 158
+ + A F+ +R + F
Sbjct: 117 ERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF 153
>d1vpza_ b.151.1.1 (A:) Carbon storage regulator homolog, CsrA
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 57
Score = 23.4 bits (51), Expect = 8.6
Identities = 4/21 (19%), Positives = 13/21 (61%)
Query: 42 IGIDFKIKTVDLKGKKIKLQI 62
+G D + + +KG ++++ +
Sbjct: 16 VGDDVTVTVLGVKGNQVRIGV 36
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 24.8 bits (53), Expect = 8.8
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 32 DAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDI 91
T DF+ T L + D+ + + A ++ D
Sbjct: 88 TEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQ 147
Query: 92 TNEKSFDNILKWLRNI--DEHANEDVEKMI 119
E F + +L+N + D+E ++
Sbjct: 148 LMEMDFQETITFLQNPPTKDWTETDIEMLL 177
>d2a2pa1 c.47.1.23 (A:25-144) Selenoprotein M {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 120
Score = 24.4 bits (53), Expect = 9.0
Identities = 4/39 (10%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 69 ERFHTITTSYYRGAMGIMLVYDITNEKSFD-NILKWLRN 106
+ +H + + GA +++ ++ + + R+
Sbjct: 41 QLYHNLVMKHLPGADPELVLLSRNYQELERIPLSQMTRD 79
Score = 24.4 bits (53), Expect = 9.0
Identities = 4/39 (10%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFD-NILKWLRN 167
+ +H + + GA +++ ++ + + R+
Sbjct: 41 QLYHNLVMKHLPGADPELVLLSRNYQELERIPLSQMTRD 79
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 25.0 bits (53), Expect = 9.3
Identities = 20/164 (12%), Positives = 52/164 (31%), Gaps = 8/164 (4%)
Query: 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71
++ G +GVGK+ R + N+ +I I+ + + + T
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64
Query: 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKM-------ILGKTK 124
T+ + + + + ++ ++ + E + + K
Sbjct: 65 LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK 124
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168
D ER + + + Y+ T+ N+ ++N+
Sbjct: 125 DEQMGERCLELVEEFESKGIDERYFYN-TSHLQPTNLNDIVKNL 167
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 25.1 bits (53), Expect = 9.6
Identities = 22/228 (9%), Positives = 62/228 (27%), Gaps = 25/228 (10%)
Query: 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71
L++G GK+ ++ + + D E
Sbjct: 32 TLVLGLRRTGKSSIIKIG-----------------------INELNLPYIYLDLRKFEER 68
Query: 72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER 131
+ I+ + + + + S LK ++ I NE K + +
Sbjct: 69 NYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEI--KFNWNRKDRLSFANL 126
Query: 132 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAI 191
+ + + ++ + N+L L ++ +++ + +
Sbjct: 127 LESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYL 186
Query: 192 AREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTI 239
E + A + + ++ E A + ++ D +
Sbjct: 187 RVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVV 234
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.411
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 982,845
Number of extensions: 46346
Number of successful extensions: 431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 172
Length of query: 253
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,268,006
Effective search space: 215561020
Effective search space used: 215561020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)