BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9623
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O00291|HIP1_HUMAN Huntingtin-interacting protein 1 OS=Homo sapiens GN=HIP1 PE=1 SV=5
Length = 1037
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 202/381 (53%), Gaps = 89/381 (23%)
Query: 6 LPRVLQPRKTSLELE---RETFEKFQSASIGKAVNSQETPVKEKH--------------- 47
LP+VL R LE RE+FE+ Q+ SI KA+N+QE VKEKH
Sbjct: 15 LPKVLSRRGVGAGLEAAERESFERTQTVSINKAINTQEVAVKEKHARTCILGTHHEKGAQ 74
Query: 48 ------------------------FH--LKDG---------------------YGKLIYQ 60
FH L+DG +G L
Sbjct: 75 TFWSVVNRLPLSSNAVLCWKFCHVFHKLLRDGHPNVLKDSLRYRNELSDMSRMWGHLSEG 134
Query: 61 YTR-------LLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLDE 113
Y + LL K+++H +NP FPGNL +S +LD GE+D+NN+FQ++VEMFDYL+
Sbjct: 135 YGQLCSIYLKLLRTKMEYHTKNPRFPGNLQMSDRQLDEAGESDVNNFFQLTVEMFDYLEC 194
Query: 114 ILALQAAVFGSLDMSRSNSMTSSGQCRLSPLIPCIQDSSQLYDFCVKILFKLHASLPSEI 173
L L VF SLDMSRS S+T++GQCRL+PLI I D S LYD+ VK+LFKLH+ LP++
Sbjct: 195 ELNLFQTVFNSLDMSRSVSVTAAGQCRLAPLIQVILDCSHLYDYTVKLLFKLHSCLPADT 254
Query: 174 LAGHRSRFLKQFSQLRQFYMTSSTLQYFKHLIQVPTLPETPPNLLIQAELGSYVTPVVIL 233
L GHR RF++QF++L+ + SS LQYFK LIQ+P LPE PPN L + L +++PVV++
Sbjct: 255 LQGHRDRFMEQFTKLKDLFYRSSNLQYFKRLIQIPQLPENPPNFLRASALSEHISPVVVI 314
Query: 234 PDPPSTSDPGDSMSPV--TGDLVDISHTSSQNASNAILGTFHDKSSTIFWQCASRLPL-- 289
P S+ D PV DL+D+ S QN F +K IF S P
Sbjct: 315 PAEASSPDS----EPVLEKDDLMDMD-ASQQN-------LFDNKFDDIFGSSFSSDPFNF 362
Query: 290 -MENVIVAWKFCHVLHKILRE 309
+N + + H++ ++ RE
Sbjct: 363 NSQNGVNKDEKDHLIERLYRE 383
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 51/71 (71%)
Query: 262 QNASNAILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQ 321
++A ILGT H+K + FW +RLPL N ++ WKFCHV HK+LR+GHP+V+K+S++
Sbjct: 58 KHARTCILGTHHEKGAQTFWSVVNRLPLSSNAVLCWKFCHVFHKLLRDGHPNVLKDSLRY 117
Query: 322 AQVITNVGKMW 332
++++ +MW
Sbjct: 118 RNELSDMSRMW 128
>sp|Q8VD75|HIP1_MOUSE Huntingtin-interacting protein 1 OS=Mus musculus GN=Hip1 PE=1 SV=2
Length = 1029
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/266 (45%), Positives = 172/266 (64%), Gaps = 17/266 (6%)
Query: 49 HLKDGYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMF 108
HL +GYG+L Y +LL ++++H +NP FPGNL +S +LD GE+D+NN+FQ++VEMF
Sbjct: 130 HLSEGYGQLCSIYLKLLRTRMEYHTKNPRFPGNLQMSDRQLDEAGESDVNNFFQLTVEMF 189
Query: 109 DYLDEILALQAAVFGSLDMSRSNSMTSSGQCRLSPLIPCIQDSSQLYDFCVKILFKLHAS 168
DYL+ L L VF SLDMSRS S+T++GQCRL+PLI I D S LYD+ VK+LFKLH+
Sbjct: 190 DYLECELNLFQTVFNSLDMSRSVSVTTAGQCRLAPLIQVILDCSHLYDYTVKLLFKLHSC 249
Query: 169 LPSEILAGHRSRFLKQFSQLRQFYMTSSTLQYFKHLIQVPTLPETPPNLLIQAELGSYVT 228
LP++ L GHR RF++QF++L+ + SS LQYFK LIQ+P LPE PPN L + L +++
Sbjct: 250 LPADTLQGHRDRFMEQFTKLKDLFQRSSNLQYFKRLIQIPQLPENPPNFLRASALSEHIS 309
Query: 229 PVVILPDPPSTSDPGDSMSPV--TGDLVDISHTSSQNASNAILGTFHDKSSTIFWQCASR 286
PVV++P S+ D PV DL+D+ +AS L F +K +F S
Sbjct: 310 PVVVIPAEVSSPDS----EPVLEKDDLMDM------DASQQTL--FDNKFDDVFGSSLSS 357
Query: 287 LPL---MENVIVAWKFCHVLHKILRE 309
P +N + + H++ ++ RE
Sbjct: 358 DPFNFNNQNGVNKDEKDHLIERLYRE 383
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 262 QNASNAILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQ 321
++A ILGT H+K + FW +RLPL N ++ WKFCHV HK+LR+GHP+V+K+S++
Sbjct: 58 KHARTCILGTHHEKGAQTFWSVVNRLPLSSNAMLCWKFCHVFHKLLRDGHPNVLKDSLRY 117
Query: 322 AQVITNVGKMW-HAAQYISRSC 342
++++ +MW H ++ + C
Sbjct: 118 KNELSDMSRMWGHLSEGYGQLC 139
>sp|Q9JKY5|HIP1R_MOUSE Huntingtin-interacting protein 1-related protein OS=Mus musculus
GN=Hip1r PE=1 SV=2
Length = 1068
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 155/295 (52%), Gaps = 70/295 (23%)
Query: 8 RVLQPRKT-SLELERETFEKFQSASIGKAVNSQETPVKEKHFH----------------- 49
RVL R SLE ERE F+K Q+ SI KA+NSQE PVKEKH
Sbjct: 10 RVLSRRPGHSLEAEREQFDKTQAISISKAINSQEAPVKEKHARRIILGTHHEKGAFTFWS 69
Query: 50 ------------------------LKDGYGKLIYQY------------------------ 61
L+DG+ +++ Y
Sbjct: 70 YAIGLPLSSSSILSWKFCHVLHKVLRDGHPNVLHDYQRYRSNIREIGDLWGHLRDQYGHL 129
Query: 62 ----TRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLDEILAL 117
T+LLL K+ FH ++P FP L ++ L++ D+NN FQ++VEMFDY+D L L
Sbjct: 130 VNIYTKLLLTKISFHLKHPQFPAGLEVTDEVLEKAAGTDVNNIFQLTVEMFDYMDCELKL 189
Query: 118 QAAVFGSLDMSRSNSMTSSGQCRLSPLIPCIQDSSQLYDFCVKILFKLHASLPSEILAGH 177
+VF L+ + + S SSGQCRL+PLI IQD S LY + VK++FKLH+ LP++ L GH
Sbjct: 190 SESVFRQLNTAIAVSQMSSGQCRLAPLIQVIQDCSHLYHYTVKLMFKLHSCLPADTLQGH 249
Query: 178 RSRFLKQFSQLRQFYMTSSTLQYFKHLIQVPTLPETPPNLLIQAELGSYVTPVVI 232
R RF +QF L+ F+ +S + YFK LIQ+P LPE PPN L + L ++ PVV+
Sbjct: 250 RDRFHEQFHSLKNFFRRASDMLYFKRLIQIPRLPEGPPNFLRASALAEHIKPVVV 304
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%)
Query: 262 QNASNAILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQ 321
++A ILGT H+K + FW A LPL + I++WKFCHVLHK+LR+GHP+V+ + +
Sbjct: 49 KHARRIILGTHHEKGAFTFWSYAIGLPLSSSSILSWKFCHVLHKVLRDGHPNVLHDYQRY 108
Query: 322 AQVITNVGKMW 332
I +G +W
Sbjct: 109 RSNIREIGDLW 119
>sp|O75146|HIP1R_HUMAN Huntingtin-interacting protein 1-related protein OS=Homo sapiens
GN=HIP1R PE=1 SV=2
Length = 1068
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/185 (49%), Positives = 126/185 (68%)
Query: 49 HLKDGYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMF 108
HL D YG+L+ YT+LLL K+ FH ++P FP L ++ L++ D+NN FQ++VEMF
Sbjct: 121 HLHDRYGQLVNVYTKLLLTKISFHLKHPQFPAGLEVTDEVLEKAAGTDVNNIFQLTVEMF 180
Query: 109 DYLDEILALQAAVFGSLDMSRSNSMTSSGQCRLSPLIPCIQDSSQLYDFCVKILFKLHAS 168
DY+D L L +VF L+ + + S SSGQCRL+PLI IQD S LY + VK+LFKLH+
Sbjct: 181 DYMDCELKLSESVFRQLNTAIAVSQMSSGQCRLAPLIQVIQDCSHLYHYTVKLLFKLHSC 240
Query: 169 LPSEILAGHRSRFLKQFSQLRQFYMTSSTLQYFKHLIQVPTLPETPPNLLIQAELGSYVT 228
LP++ L GHR RF +QF LR F+ +S + YFK LIQ+P LPE PPN L + L ++
Sbjct: 241 LPADTLQGHRDRFHEQFHSLRNFFRRASDMLYFKRLIQIPRLPEGPPNFLRASALAEHIK 300
Query: 229 PVVIL 233
PVV++
Sbjct: 301 PVVVI 305
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%)
Query: 262 QNASNAILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQ 321
++A ILGT H+K + FW A LPL + I++WKFCHVLHK+LR+GHP+V+ + +
Sbjct: 49 KHARRIILGTHHEKGAFTFWSYAIGLPLPSSSILSWKFCHVLHKVLRDGHPNVLHDCQRY 108
Query: 322 AQVITNVGKMW 332
I +G +W
Sbjct: 109 RSNIREIGDLW 119
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 8 RVLQPRKT-SLELERETFEKFQSASIGKAVNSQETPVKEKH 47
RVL R SLE ERE F+K Q+ SI KA+N+QE PVKEKH
Sbjct: 10 RVLSRRPGHSLEAEREQFDKTQAISISKAINTQEAPVKEKH 50
>sp|Q02328|SLAP2_CAEEL Huntington interacting protein related 1 OS=Caenorhabditis elegans
GN=hipr-1 PE=3 SV=3
Length = 927
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 134/213 (62%), Gaps = 3/213 (1%)
Query: 53 GYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLD 112
GYG I Y +LL ++ FH + P PG L L+ S+L + E D++N F+M+++M D +D
Sbjct: 110 GYGPCIESYCKLLHDRVTFHNKYPVVPGKLDLNDSQLKTL-EGDLDNMFEMTIDMLDQMD 168
Query: 113 EILALQAAVFGSLDMSRSNSMTSSGQCRLSPLIPCIQDSSQLYDFCVKILFKLHASLPSE 172
+L LQ V+ ++ R NS+ GQC LSPLI I D+S+ YD+ VK++FKLH+ +P +
Sbjct: 169 ALLVLQDRVYEMMNSLRWNSLIPQGQCMLSPLIIAILDTSKFYDYLVKMIFKLHSQVPPD 228
Query: 173 ILAGHRSRFLKQFSQLRQFYMTSSTLQYFKHLIQVPTLPETPPNLLIQAELGSYVTPVVI 232
L GHRSRF F + ++FY SS LQYFK+L+ +PTLP PN L Q++L SY TP
Sbjct: 229 ALEGHRSRFRTIFERTKKFYEESSNLQYFKYLVSIPTLPSHAPNFLQQSDLESYRTPHAY 288
Query: 233 LPDPPSTSDPGDSMSPVTGDLVDISHTSSQNAS 265
L S+ G S++ G+L++++ Q AS
Sbjct: 289 L--HSEGSEDGTSLNGHDGELLNLAEAEPQQAS 319
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 262 QNASNAILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQ 321
++A I+GT +KSS IFW R+ L ++ ++ WKFCH++HK+LR+GH V +E+ +
Sbjct: 33 KHARTIIVGTHKEKSSGIFWHTVGRIQLEKHPVLTWKFCHLVHKLLRDGHRKVPEETYRY 92
Query: 322 AQVITNVGKMW 332
T + + W
Sbjct: 93 VNRFTQLSQFW 103
>sp|Q9P6L5|SLA2_SCHPO Endocytosis protein end4 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=end4 PE=1 SV=2
Length = 1102
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 17/194 (8%)
Query: 53 GYGKLIYQYTRLLLGKLDFHRRNPGFPGNL----ILSQSELDRIGENDINNYFQMSVEMF 108
GY LI Y LL KL FH ++P F G +S ++D D N ++ +M
Sbjct: 113 GYSDLIRDYVDYLLDKLSFHAQHPEFNGTFEYKEYISLRQVD-----DPNEGYETVYDMM 167
Query: 109 DYLDEILALQAAVFGSLDMSRSNSMTSSGQCRLSPLIPCIQDSSQLYDFCVKILFKLHAS 168
+ D I Q +F + S N +CR++ L+P +Q+S +Y F +L L+++
Sbjct: 168 NLQDHIDEFQKQLFSNFKRSNKN------ECRIAALVPLVQESYGIYRFLTSMLRALYST 221
Query: 169 LPS-EILAGHRSRFLKQFSQLRQFYMTSSTLQYFKHLIQVPTLPETPPNLLIQAELGSY- 226
+ + E L + R+ Q +LRQFY S L+Y LI VP LP PP+L +
Sbjct: 222 VDAPETLEPLKHRYKSQHHRLRQFYADCSNLRYLTSLISVPRLPHDPPDLEGDDNIPDLP 281
Query: 227 VTPVVILPDPPSTS 240
P I P P S
Sbjct: 282 KRPASIAPQPTGAS 295
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 268 ILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKES 318
I+ T+ ++ FW PL+ N + +K +H++L+EGH + +S
Sbjct: 41 IIFTWDHHTARPFWTAIKVQPLLANEVQTFKALITIHRVLQEGHKSALVDS 91
>sp|P33338|SLA2_YEAST Protein SLA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SLA2 PE=1 SV=5
Length = 968
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 9/171 (5%)
Query: 53 GYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLD 112
Y KLI +Y R L+ KLDFH + GF + + + +D + ++ +++ D
Sbjct: 101 SYSKLIREYVRYLVLKLDFHAHHRGFNNGTFEYEEYVSLVSVSDPDEGYETILDLMSLQD 160
Query: 113 EILALQAAVFGSLDMSRSNSMTSSGQCRLSPLIPCIQDSSQLYDFCVKILFKLHASLP-- 170
+ +F S+ R N+ +C++S LIP I +S +Y F +L +H L
Sbjct: 161 SLDEFSQIIFASIQSERRNT-----ECKISALIPLIAESYGIYKFITSMLRAMHRQLNDA 215
Query: 171 --SEILAGHRSRFLKQFSQLRQFYMTSSTLQYFKHLIQVPTLPETPPNLLI 219
L + R+ Q ++L +FY S+++Y L+ +P LP P++ +
Sbjct: 216 EGDAALQPLKERYELQHARLFEFYADCSSVKYLTTLVTIPKLPVDAPDVFL 266
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 268 ILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITN 327
I+ T+ +SS + LPL + + +K VLHKI++EGHP + E+I+ I +
Sbjct: 32 IVYTWDHQSSKAVFTTLKTLPLANDEVQLFKMLIVLHKIIQEGHPSALAEAIRDRDWIRS 91
Query: 328 VGKMWHAAQYISRSCRR-VRF 347
+G++ S+ R VR+
Sbjct: 92 LGRVHSGGSSYSKLIREYVRY 112
>sp|Q6NYX6|CCNF_DANRE Cyclin-F OS=Danio rerio GN=ccnf PE=2 SV=1
Length = 764
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 174 LAGHRSRFLKQFSQLRQFYMTSSTLQYFKHLIQVPTLPETPPNLLIQAELGSYVTPVVIL 233
L G + RF Q ++ T+ FK L V +PE P + + + G L
Sbjct: 509 LTGVKQRFEDDSYQ----QISKDTVMGFKELCHVLEVPEVEPQVEVSSTSGQITEMHTFL 564
Query: 234 PDPPSTSD--PGDSMSPVTGDLVDISHTSSQNASNAILGTFHDKS 276
P S+S DSM G V N +LG F D S
Sbjct: 565 SSPTSSSKRRRADSMQAHRGAFVATPTAELSNQEETLLGDFLDWS 609
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,918,293
Number of Sequences: 539616
Number of extensions: 5326780
Number of successful extensions: 11872
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11846
Number of HSP's gapped (non-prelim): 29
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)