Query psy9623
Match_columns 355
No_of_seqs 222 out of 277
Neff 5.0
Searched_HMMs 29240
Date Sat Aug 17 00:29:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 100.0 2.5E-35 8.6E-40 283.7 11.0 160 53-229 132-298 (299)
2 3zym_A Phosphatidylinositol-bi 99.9 5.7E-28 2E-32 234.0 13.6 178 27-220 28-284 (310)
3 3zyl_A Phosphatidylinositol-bi 99.9 9.3E-25 3.2E-29 208.1 13.6 165 26-204 27-270 (271)
4 3zyl_A Phosphatidylinositol-bi 99.7 1.9E-18 6.4E-23 164.7 2.0 98 254-353 39-151 (271)
5 3zym_A Phosphatidylinositol-bi 99.7 1.8E-18 6.1E-23 167.6 1.9 98 254-353 39-151 (310)
6 1hx8_A Synapse-enriched clathr 99.7 2.9E-18 9.8E-23 165.0 1.3 97 254-351 34-155 (299)
7 1inz_A EPS15-interacting porte 94.6 0.041 1.4E-06 47.9 5.2 91 255-345 35-138 (148)
8 1eyh_A Epsin; superhelix of he 93.5 0.04 1.4E-06 47.7 2.9 90 256-345 18-120 (144)
9 3onk_A Epsin-3, ENT3; helix, p 81.5 0.32 1.1E-05 42.3 0.3 74 257-330 25-101 (150)
10 1xgw_A Epsin 4; ENTH, enthopro 76.0 1 3.4E-05 40.3 1.7 87 257-343 48-148 (176)
11 3bej_E Nuclear receptor coacti 54.0 5.1 0.00017 24.9 1.2 12 302-313 14-25 (26)
12 1vdy_A Hypothetical protein (R 41.7 16 0.00054 31.3 2.9 54 280-333 50-103 (140)
13 2prg_C Nuclear receptor coacti 26.5 22 0.00075 28.3 1.1 13 302-314 67-79 (88)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=100.00 E-value=2.5e-35 Score=283.69 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=134.7
Q ss_pred CccHHHHHHHHHHHHH-HhhhhcCCCCCCCccccchhhcccccCCCCchhHhHHhHhhhHHHHHHHHHHHHHhcCCCCCC
Q psy9623 53 GYGKLIYQYTRLLLGK-LDFHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLDEILALQAAVFGSLDMSRSN 131 (355)
Q Consensus 53 ~Yg~lI~~Y~klL~~K-LeFH~k~~~fpG~l~~e~e~l~~~~~~D~n~~~q~~~dl~DllD~l~~LQ~~Vf~~l~~~~~~ 131 (355)
|||+||+.|++||.+| +.||..+..| + .+. .+.++++...+++..+||+++.||++|++.++|.+.+
T Consensus 132 d~s~~Ir~Ya~yL~~r~~~f~~~~~d~------~--~~~----~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~ 199 (299)
T 1hx8_A 132 DMSPFIRRYAKYLNEKSLSYRAMAFDF------C--KVK----RGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQS 199 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCG------G--GC---------CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCG
T ss_pred chhHHHHHHHHHHHHHHHHHHHhCCCc------c--ccc----cCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 3889999999999999 7899887533 2 111 1344555566677789999999999999999998876
Q ss_pred CCCCCCcccccchhhhHhhhhhHHHHHHHHHHHH----hhcCChhHHHHHH--HHHHHHHHHHHHHHHhcCCCccccccc
Q psy9623 132 SMTSSGQCRLSPLIPCIQDSSQLYDFCVKILFKL----HASLPSEILAGHR--SRFLKQFSQLRQFYMTSSTLQYFKHLI 205 (355)
Q Consensus 132 S~t~~gqcrla~Li~vI~ES~~IY~~iv~~lf~L----h~~lp~daL~g~r--~RF~~Q~~~L~~FY~~cs~L~yf~sLI 205 (355)
.+.+|+|+++||++||+||++||+++++.+++| +.....|+..+|+ +||.+|+++|++||+.|++++|++ +
T Consensus 200 -~~~~n~~~~~Al~llv~Ds~~lY~~i~~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~--~ 276 (299)
T 1hx8_A 200 -NDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK--G 276 (299)
T ss_dssp -GGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG--G
T ss_pred -ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC--C
Confidence 457899999999999999999999999977776 5556688888888 999999999999999999999954 8
Q ss_pred cccCCCCCCCchhhhhccCCccCC
Q psy9623 206 QVPTLPETPPNLLIQAELGSYVTP 229 (355)
Q Consensus 206 qiP~LP~~PPnFl~~s~l~eyv~p 229 (355)
+||+||+.||||+.+ ||||++.
T Consensus 277 ~iP~L~~~p~~ll~~--Lee~l~~ 298 (299)
T 1hx8_A 277 DIPDLTKAPSSLLDA--LEQHLAT 298 (299)
T ss_dssp GSCCCCCCCHHHHHH--HHHHHHT
T ss_pred CCCCCCCCCHHHHHH--HHHHHhh
Confidence 999999999999986 9999863
No 2
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=99.95 E-value=5.7e-28 Score=234.03 Aligned_cols=178 Identities=13% Similarity=0.177 Sum_probs=130.1
Q ss_pred HHHHHHHhhhcCCCCCcccccc----------------------------------------------------------
Q psy9623 27 FQSASIGKAVNSQETPVKEKHF---------------------------------------------------------- 48 (355)
Q Consensus 27 ~~~isI~KA~n~~E~p~KeKHv---------------------------------------------------------- 48 (355)
+...||.||||+.|+||||||+
T Consensus 28 ~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~~~~w~vv~KaLivlH~llreG~~~~l~~~~~~ 107 (310)
T 3zym_A 28 AVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASR 107 (310)
T ss_dssp HHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHC
T ss_pred HHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhcCCHHHHHHHHhC
Confidence 4677999999999999999999
Q ss_pred -------ccCC-------CccHHHHHHHHHHHHHHh-hhhcCCCCCCCccccchhhcccccCCCCchhHhHHhHhhhHHH
Q psy9623 49 -------HLKD-------GYGKLIYQYTRLLLGKLD-FHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLDE 113 (355)
Q Consensus 49 -------~~~d-------~Yg~lI~~Y~klL~~KLe-FH~k~~~fpG~l~~e~e~l~~~~~~D~n~~~q~~~dl~DllD~ 113 (355)
+|.| |||+||+.|++||.+|+. ||..++.|.+. .+.++++..++++..+++.
T Consensus 108 ~~~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~d~~~~-------------~~~~~~~~r~~~~~~Ll~~ 174 (310)
T 3zym_A 108 NTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKV-------------KRGADGVMRTMNTEKLLKT 174 (310)
T ss_dssp SCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTTTS-------------CCSTTSHHHHCCHHHHHHH
T ss_pred CCeeecccccCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCCCcccc-------------cCCCCCccccCCHHHHHHH
Confidence 3332 388999999999999999 88888876421 1124566677788889999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCcccccchhhhHhhhhhHHHHHHHHHHHHhhc---CC-hhHHHHH--HHHHHHHHHH
Q psy9623 114 ILALQAAVFGSLDMSRSNSMTSSGQCRLSPLIPCIQDSSQLYDFCVKILFKLHAS---LP-SEILAGH--RSRFLKQFSQ 187 (355)
Q Consensus 114 l~~LQ~~Vf~~l~~~~~~S~t~~gqcrla~Li~vI~ES~~IY~~iv~~lf~Lh~~---lp-~daL~g~--r~RF~~Q~~~ 187 (355)
++.||+.|++.++|.+.+.. .+|.|+++||.|+++||++||+++++.+-.|-.. ++ .|+..++ .+||.+|+++
T Consensus 175 l~~lQ~lid~ll~~~~~~~~-~~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ffem~~~da~~al~iykrf~~Q~e~ 253 (310)
T 3zym_A 175 VPIIQNQMDALLDFNVNSNE-LTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTR 253 (310)
T ss_dssp HHHHHHHHHHHHTSCCCGGG-CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987744 6789999999999999999999998743333222 11 3444444 5999999999
Q ss_pred HHHHHHhcCCCccccccccccCCCCCCCchhhh
Q psy9623 188 LRQFYMTSSTLQYFKHLIQVPTLPETPPNLLIQ 220 (355)
Q Consensus 188 L~~FY~~cs~L~yf~sLIqiP~LP~~PPnFl~~ 220 (355)
|.+||+.|+++. ++++ +||+||++||+.+.+
T Consensus 254 L~~Fy~~ck~l~-l~~~-~iP~L~~~p~d~l~~ 284 (310)
T 3zym_A 254 ISEFLKVAEQVG-IDRG-DISGSGSGHMDRVRN 284 (310)
T ss_dssp HHHHHHHHHHTC--------------------C
T ss_pred HHHHHHHHHHcC-CCCC-CCCCCCcccchHHHH
Confidence 999999999999 7887 999999999998764
No 3
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=99.92 E-value=9.3e-25 Score=208.09 Aligned_cols=165 Identities=15% Similarity=0.184 Sum_probs=134.0
Q ss_pred HHHHHHHHhhhcCCCCCcccccc---------------------------------------------------------
Q psy9623 26 KFQSASIGKAVNSQETPVKEKHF--------------------------------------------------------- 48 (355)
Q Consensus 26 k~~~isI~KA~n~~E~p~KeKHv--------------------------------------------------------- 48 (355)
.+..+||.||||+.|+||||||+
T Consensus 27 s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~~~~w~v~~KaLivlH~llreG~~~~l~~~~~ 106 (271)
T 3zyl_A 27 SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLAS 106 (271)
T ss_dssp HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 45678999999999999999999
Q ss_pred --------ccCC-------CccHHHHHHHHHHHHHHh-hhhcCCCCCCCccccchhhcccccCCCCchhHhHHhHhhhHH
Q psy9623 49 --------HLKD-------GYGKLIYQYTRLLLGKLD-FHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLD 112 (355)
Q Consensus 49 --------~~~d-------~Yg~lI~~Y~klL~~KLe-FH~k~~~fpG~l~~e~e~l~~~~~~D~n~~~q~~~dl~DllD 112 (355)
+|.| |||+||+.|++||.+|+. ||..++.|++. .+.++++..++++..+|+
T Consensus 107 ~~~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d~~~~-------------k~~~~~~~r~~~~~~Ll~ 173 (271)
T 3zyl_A 107 RNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKV-------------KRGADGVMRTMNTEKLLK 173 (271)
T ss_dssp CSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTS-------------CCSTTSHHHHCCHHHHHH
T ss_pred CCCeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCCcccc-------------CCCCCCccccCCHHHHHH
Confidence 3433 388999999999999997 99999987652 113456767778889999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCcccccchhhhHhhhhhHHHHHHHHHHHHhhcC---C-hhHHHHH--HHHHHHHHH
Q psy9623 113 EILALQAAVFGSLDMSRSNSMTSSGQCRLSPLIPCIQDSSQLYDFCVKILFKLHASL---P-SEILAGH--RSRFLKQFS 186 (355)
Q Consensus 113 ~l~~LQ~~Vf~~l~~~~~~S~t~~gqcrla~Li~vI~ES~~IY~~iv~~lf~Lh~~l---p-~daL~g~--r~RF~~Q~~ 186 (355)
.++.||+.|++.++|.+.+.. .+|.|+++||.|+++||++||+++++.+-.|-... + .|+..++ .+||.+|++
T Consensus 174 ~l~~lQ~lld~ll~~~~~~~~-~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~~~da~~aleiykrf~~Q~~ 252 (271)
T 3zyl_A 174 TVPIIQNQMDALLDFNVNSNE-LTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMT 252 (271)
T ss_dssp HHHHHHHHHHHHHTTCCCGGG-CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCccccc-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987754 67899999999999999999999987443332221 1 3444444 599999999
Q ss_pred HHHHHHHhcCCCcccccc
Q psy9623 187 QLRQFYMTSSTLQYFKHL 204 (355)
Q Consensus 187 ~L~~FY~~cs~L~yf~sL 204 (355)
+|.+||+.|+++..-+..
T Consensus 253 ~L~~Fy~~ck~~gi~~~~ 270 (271)
T 3zyl_A 253 RISEFLKVAEQVGIDRGD 270 (271)
T ss_dssp HHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHcCcCcCC
Confidence 999999999998876654
No 4
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=99.70 E-value=1.9e-18 Score=164.66 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=84.2
Q ss_pred cccCCCcccccccceeeeeccccc-hhhhhhh-hcccCCCCchhHHHHHHHHHHhhhccCcccHHHHHHhhhHHHHHhhh
Q psy9623 254 VDISHTSSQNASNAILGTFHDKSS-TIFWQCA-SRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKM 331 (355)
Q Consensus 254 Id~sapk~khvR~~I~~t~~~ksa-~~fw~~~-~~~Pl~~~~v~~wK~~~~lHKvLreGHp~~lkes~~~~~~l~~l~r~ 331 (355)
.|+++||+||||.||++||+.+++ ..||..+ .|++ .+|.+|+||+|+|+||+||||||++++++.++.. +.+|+++
T Consensus 39 ~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~-~~~w~v~~KaLivlH~llreG~~~~l~~~~~~~~-~~~Ls~f 116 (271)
T 3zyl_A 39 HEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT-NSSWVVVFKSLITTHHLMVYGNERFIQYLASRNT-LFNLSNF 116 (271)
T ss_dssp SSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHCSC-CCCCTTC
T ss_pred CCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHHhcCCHHHHHHHHhCCC-eechhcc
Confidence 577899999999999999999875 6666665 5777 8999999999999999999999999999988864 5588776
Q ss_pred ch------------hHHHHHHHHHHHh-hhhhhhc
Q psy9623 332 WH------------AAQYISRSCRRVR-FRAAQKT 353 (355)
Q Consensus 332 w~------------~~~yv~~l~~kl~-fh~~~~~ 353 (355)
|+ .+.|++||..|+. ||.+++.
T Consensus 117 ~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d 151 (271)
T 3zyl_A 117 LDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFD 151 (271)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 54 3789999999997 9988753
No 5
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=99.70 E-value=1.8e-18 Score=167.58 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=84.6
Q ss_pred cccCCCcccccccceeeeeccccc--hhhhhhhhcccCCCCchhHHHHHHHHHHhhhccCcccHHHHHHhhhHHHHHhhh
Q psy9623 254 VDISHTSSQNASNAILGTFHDKSS--TIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKM 331 (355)
Q Consensus 254 Id~sapk~khvR~~I~~t~~~ksa--~~fw~~~~~~Pl~~~~v~~wK~~~~lHKvLreGHp~~lkes~~~~~~l~~l~r~ 331 (355)
.|+++||+||||.||.+||+.+++ ..||....|++ .+|.+++||+|+++||+||||||++++++.++.. +.+|+++
T Consensus 39 ~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~-~~~w~vv~KaLivlH~llreG~~~~l~~~~~~~~-~~~Ls~f 116 (310)
T 3zym_A 39 HEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT-NSSWVVVFKSLITTHHLMVYGNERFIQYLASRNT-LFNLSNF 116 (310)
T ss_dssp SSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHCSC-CCCCTTC
T ss_pred CCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHhcCCHHHHHHHHhCCC-eeecccc
Confidence 577899999999999999999874 55666666888 8999999999999999999999999999988775 4488886
Q ss_pred ch------------hHHHHHHHHHHHh-hhhhhhc
Q psy9623 332 WH------------AAQYISRSCRRVR-FRAAQKT 353 (355)
Q Consensus 332 w~------------~~~yv~~l~~kl~-fh~~~~~ 353 (355)
|+ .+.|++||..|+. ||.+++.
T Consensus 117 ~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~d 151 (310)
T 3zym_A 117 LDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFD 151 (310)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 63 3789999999999 9987653
No 6
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=99.69 E-value=2.9e-18 Score=164.96 Aligned_cols=97 Identities=9% Similarity=0.093 Sum_probs=79.7
Q ss_pred cccCCCcccccccceeeeecccc--chhhhhhhhcccCCCCchhHHHHHHHHHHhhhccCcccHHHHHHhh------hHH
Q psy9623 254 VDISHTSSQNASNAILGTFHDKS--STIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQA------QVI 325 (355)
Q Consensus 254 Id~sapk~khvR~~I~~t~~~ks--a~~fw~~~~~~Pl~~~~v~~wK~~~~lHKvLreGHp~~lkes~~~~------~~l 325 (355)
.|+.+||+||||.||++||++++ +..||....+ |..+|.+|+||+|||+|||||||||+++++..++. +|.
T Consensus 34 ~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R-~~~~~w~va~K~LivlH~llreG~~~~~~~l~~~~~~l~l~~f~ 112 (299)
T 1hx8_A 34 EECIGPKKKHLDYLVHCANEPNVSIPHLANLLIER-SQNANWVVVYKSLITTHHLMAYGNERFMQYLASSNSTFNLSSFL 112 (299)
T ss_dssp SSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCCCCTTCC
T ss_pred CCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhh-ccCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHhCCcccchhhhh
Confidence 47889999999999999999999 5556665555 99999999999999999999999999999998755 232
Q ss_pred HHH------------hhhch----hHHHHHHHHHH-Hhhhhhh
Q psy9623 326 TNV------------GKMWH----AAQYISRSCRR-VRFRAAQ 351 (355)
Q Consensus 326 ~~l------------~r~w~----~~~yv~~l~~k-l~fh~~~ 351 (355)
++- ...|+ .+.|+.||..| +.||.++
T Consensus 113 D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r~~~f~~~~ 155 (299)
T 1hx8_A 113 DKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMA 155 (299)
T ss_dssp CCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHhC
Confidence 221 13344 28999999999 7999876
No 7
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=94.57 E-value=0.041 Score=47.91 Aligned_cols=91 Identities=10% Similarity=0.007 Sum_probs=67.5
Q ss_pred ccCCCcccccccceeeeeccccchhhhhhhhcccCC--CCchhHHHHHHHHHHhhhccCcccHHHHHHhhhHHHHHhhh-
Q psy9623 255 DISHTSSQNASNAILGTFHDKSSTIFWQCASRLPLM--ENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKM- 331 (355)
Q Consensus 255 d~sapk~khvR~~I~~t~~~ksa~~fw~~~~~~Pl~--~~~v~~wK~~~~lHKvLreGHp~~lkes~~~~~~l~~l~r~- 331 (355)
|...|+.++.--|...|++..........+.++=-. .+-.+.+|+|.+||=+|+.|.+.|+.++..|..-|..|..+
T Consensus 35 d~wGP~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~I~~L~~F~ 114 (148)
T 1inz_A 35 DPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQ 114 (148)
T ss_dssp CSCCCCSCHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccee
Confidence 345667788888888999875544333433333112 46789999999999999999999999999999988888763
Q ss_pred --------ch--hHHHHHHHHHHH
Q psy9623 332 --------WH--AAQYISRSCRRV 345 (355)
Q Consensus 332 --------w~--~~~yv~~l~~kl 345 (355)
|| .|+++.+|++=|
T Consensus 115 y~d~~g~D~G~nVR~kAk~l~~LL 138 (148)
T 1inz_A 115 YVDRDGKDQGVNVREKAKQLVALL 138 (148)
T ss_dssp CCCSSCCCCCHHHHHHHHHHHHHH
T ss_pred eeCCCCcCchHHHHHHHHHHHHHh
Confidence 33 388888887654
No 8
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=93.45 E-value=0.04 Score=47.71 Aligned_cols=90 Identities=9% Similarity=-0.010 Sum_probs=65.4
Q ss_pred cCCCcccccccceeeeeccccchhhhhhhhcccCC--CCchhHHHHHHHHHHhhhccCcccHHHHHHhhhHHHHHhhh--
Q psy9623 256 ISHTSSQNASNAILGTFHDKSSTIFWQCASRLPLM--ENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKM-- 331 (355)
Q Consensus 256 ~sapk~khvR~~I~~t~~~ksa~~fw~~~~~~Pl~--~~~v~~wK~~~~lHKvLreGHp~~lkes~~~~~~l~~l~r~-- 331 (355)
...|+.++.--|...|++..........+.++=.. .+-.+.+|+|.+||=+|+.|.+.|+.++..|..-|..|..+
T Consensus 18 ~wGP~~~~m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~~~~~~~~~i~~L~~F~y 97 (144)
T 1eyh_A 18 PWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQY 97 (144)
T ss_dssp SSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCC
T ss_pred CCCCCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHHHHHHhhHHHhhhcccee
Confidence 45677788888888998865433333333333112 35678999999999999999999999999999988888764
Q ss_pred -------chh--HHHHHHHHHHH
Q psy9623 332 -------WHA--AQYISRSCRRV 345 (355)
Q Consensus 332 -------w~~--~~yv~~l~~kl 345 (355)
||. |+++.+|+.=|
T Consensus 98 ~d~~g~D~G~~VR~kak~l~~Ll 120 (144)
T 1eyh_A 98 VDRDGKDQGVNVREKAKQLVALL 120 (144)
T ss_dssp BCTTSCBCHHHHHHHHHHHHHHH
T ss_pred eCCCccchHHHHHHHHHHHHHHH
Confidence 333 77777776543
No 9
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=81.53 E-value=0.32 Score=42.34 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=53.5
Q ss_pred CCCcccccccceeeeeccccchhhhhhhhcccC---CCCchhHHHHHHHHHHhhhccCcccHHHHHHhhhHHHHHhh
Q psy9623 257 SHTSSQNASNAILGTFHDKSSTIFWQCASRLPL---MENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGK 330 (355)
Q Consensus 257 sapk~khvR~~I~~t~~~ksa~~fw~~~~~~Pl---~~~~v~~wK~~~~lHKvLreGHp~~lkes~~~~~~l~~l~r 330 (355)
..|..++.--|..+|++..........+.++=. ..+--+.+|+|.+|+=+|+.|.+.|+.++..|..-|+.|..
T Consensus 25 wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~~i~~L~~ 101 (150)
T 3onk_A 25 WGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERFIDDTRNSINLIRILET 101 (150)
T ss_dssp SCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHHHHHHHTTHHHHHGGGG
T ss_pred CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhc
Confidence 345566766777788875443222233322211 23678899999999999999999999999999999998765
No 10
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=76.00 E-value=1 Score=40.26 Aligned_cols=87 Identities=13% Similarity=0.033 Sum_probs=62.0
Q ss_pred CCCcccccccceeeeeccccchhhhhhhhccc---CCCCchhHHHHHHHHHHhhhccCcccHHHHHHhhhHHHHHhhh--
Q psy9623 257 SHTSSQNASNAILGTFHDKSSTIFWQCASRLP---LMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKM-- 331 (355)
Q Consensus 257 sapk~khvR~~I~~t~~~ksa~~fw~~~~~~P---l~~~~v~~wK~~~~lHKvLreGHp~~lkes~~~~~~l~~l~r~-- 331 (355)
..|..++.--|.-.|++..........+.++= =..+-.+.+|+|.+|+=+|+.|...|+.++..|..-|+.|..+
T Consensus 48 wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~vv~~~r~~i~~I~~L~~F~y 127 (176)
T 1xgw_A 48 WGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHF 127 (176)
T ss_dssp SCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCC
T ss_pred CCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccCee
Confidence 34556777777778888655444444432221 2367789999999999999999999999999999888777654
Q ss_pred -------ch--hHHHHHHHHH
Q psy9623 332 -------WH--AAQYISRSCR 343 (355)
Q Consensus 332 -------w~--~~~yv~~l~~ 343 (355)
|| .|+.+..|+.
T Consensus 128 ~D~~G~D~G~~VR~kAk~i~~ 148 (176)
T 1xgw_A 128 VDEHGKDQGINIRQKVKELVE 148 (176)
T ss_dssp BCTTSCBCHHHHHHHHHHHHH
T ss_pred ECCCCCChHHHHHHHHHHHHH
Confidence 44 3666665554
No 11
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=53.98 E-value=5.1 Score=24.93 Aligned_cols=12 Identities=50% Similarity=1.151 Sum_probs=10.1
Q ss_pred HHHHhhhccCcc
Q psy9623 302 VLHKILREGHPH 313 (355)
Q Consensus 302 ~lHKvLreGHp~ 313 (355)
.+|++||+|-|+
T Consensus 14 ILHrLLQ~~sP~ 25 (26)
T 3bej_E 14 ILHRLLQEGSPS 25 (26)
T ss_pred HHHHHHHcCCCC
Confidence 589999999774
No 12
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=41.73 E-value=16 Score=31.27 Aligned_cols=54 Identities=11% Similarity=0.033 Sum_probs=43.0
Q ss_pred hhhhhhcccCCCCchhHHHHHHHHHHhhhccCcccHHHHHHhhhHHHHHhhhch
Q psy9623 280 FWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWH 333 (355)
Q Consensus 280 fw~~~~~~Pl~~~~v~~wK~~~~lHKvLreGHp~~lkes~~~~~~l~~l~r~w~ 333 (355)
....+.+.=-..++-+-+|+|.+|=-+++.|++.++.+..+|..-|+.|..+-+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g 103 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKG 103 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCC
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCC
Confidence 333333333345666999999999999999999999999999999999876555
No 13
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=26.48 E-value=22 Score=28.29 Aligned_cols=13 Identities=46% Similarity=0.989 Sum_probs=10.7
Q ss_pred HHHHhhhccCccc
Q psy9623 302 VLHKILREGHPHV 314 (355)
Q Consensus 302 ~lHKvLreGHp~~ 314 (355)
.|||+||+|-|+=
T Consensus 67 ILHrLLQ~gSP~d 79 (88)
T 2prg_C 67 ILHRLLQEGSPSD 79 (88)
T ss_dssp HHHHHHHSSCCCC
T ss_pred HHHHHHhcCChHh
Confidence 4899999997763
Done!