RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9623
(355 letters)
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic accessory
proteins that has been implicated in the formation of
clathrin-coated pits. The domain is involved in
phosphatidylinositol 4,5-bisphosphate binding and is a
universal adaptor for nucleation of clathrin coats.
Length = 278
Score = 138 bits (349), Expect = 1e-38
Identities = 57/186 (30%), Positives = 81/186 (43%), Gaps = 14/186 (7%)
Query: 48 FHLKDGYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEM 107
L YG I Y + L +LDFHR+ P P + R D N+ + MS M
Sbjct: 99 MSLTWDYGAFIRAYAKYLDERLDFHRKLPRDP-TFERVEYGSLRAV-GDPNSRYTMS--M 154
Query: 108 FDYLDEILALQAAVFGSLDMS-RSNSMTSSGQCRLSPLIPCIQDSSQLYDFCVKILFKLH 166
D LD I LQ + L N++T +C ++ LI I++S LY + + L
Sbjct: 155 EDLLDIIPKLQKLLDALLKCKPTGNALT--NECIIAALILLIKESFGLYGAINEGIINLL 212
Query: 167 ASLP------SEILAGHRSRFLKQFSQLRQFYMTSSTLQYFKHLIQVPTLPETPPNLLIQ 220
++ G RF+ QF +L++FY L YF+ L +P LP PPNLL
Sbjct: 213 EKFFEMSKPDADAALGIYKRFVSQFERLKEFYEVCKNLGYFRSLE-IPKLPHIPPNLLDA 271
Query: 221 AELGSY 226
E
Sbjct: 272 LEEHLR 277
Score = 69.6 bits (171), Expect = 2e-13
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 267 AILGTFHD--KSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQV 324
IL K + +FW + RLPL N +VA K ++HK+LREGHP V++E ++ +
Sbjct: 26 EILVGTSSPAKVAALFWALSRRLPLTRNWVVALKALILVHKLLREGHPSVLQELLRARRR 85
Query: 325 ITNVGKMWH 333
I+++ ++
Sbjct: 86 ISSLLRISS 94
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain.
Length = 127
Score = 57.3 bits (139), Expect = 3e-10
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 268 ILGTFHDKSSTIFWQCASRLPLME--NVIVAWKFCHVLHKILREGHPHVIKESIKQAQVI 325
I GT ++KSS L + N V +K +LH +LR G P VI E+++ I
Sbjct: 27 IQGTHNEKSSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILEALRNRNRI 86
Query: 326 TNVGKMWH 333
N+
Sbjct: 87 LNLSDFQD 94
Score = 36.1 bits (84), Expect = 0.006
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 45 EKHFHLKDGYGKLIYQYTRLLLGKLDFHRRNPGFP 79
+ G I Y + LL +L+ RR
Sbjct: 93 QDIDSRGKDQGANIRTYAKYLLERLEDDRRLKEER 127
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor
protein 180 (AP180), clathrin assembly lymphoid myeloid
leukemia protein (CALM) and similar proteins. A set of
proteins previously designated as harboring an ENTH
domain in fact contains a highly similar, yet unique
module referred to as an AP180 N-terminal homology
(ANTH) domain. AP180 and CALM play important roles in
clathrin-mediated endocytosis. AP180 is a brain-specific
clathrin-binding protein which stimulates clathrin
assembly during the recycling of synaptic vesicles. The
ANTH domain is structurally similar to the VHS domain
and is composed of a superhelix of eight alpha helices.
ANTH domains bind both inositol phospholipids and
proteins, and contribute to the nucleation and formation
of clathrin coats on membranes. ANTH-bearing proteins
have recently been shown to function with adaptor
protein-1 and GGA adaptors at the trans-Golgi network,
which suggests that the ANTH domain is a universal
component of the machinery for clathrin-mediated
membrane budding.
Length = 117
Score = 54.9 bits (133), Expect = 1e-09
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 268 ILGTFHDKSST-IFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESI 319
I GT +S F SR L N +V K +LH++LREGHP ++E +
Sbjct: 25 IAGTSSSPASIPSFASALSRRLLDRNWVVVLKALILLHRLLREGHPSFLQELL 77
Score = 27.2 bits (61), Expect = 6.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 44 KEKHFHLKDGYGKLIYQYTRLLLGKLDFH 72
+K L GY I Y R L +L FH
Sbjct: 89 LDKSSSLGYGYSAFIRAYARYLDERLSFH 117
>gnl|CDD|216488 pfam01417, ENTH, ENTH domain. The ENTH (Epsin N-terminal homology)
domain is found in proteins involved in endocytosis and
cytoskeletal machinery. The function of the ENTH domain
is unknown.
Length = 124
Score = 34.1 bits (79), Expect = 0.034
Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 239 TSDPGDSMSPVTGDLVDISHTSSQNASNAILGTFHDKSSTIFWQCA-SRL-PLMENVIVA 296
T++ D P + +I+ T+ + RL +N
Sbjct: 12 TNN--DPWGPSGTLMAEIAR-----------LTYDYVEFFEIMEVLWKRLNDSGKNWRHV 58
Query: 297 WKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWH 333
+K +L +L+ G V+ + + +I + +
Sbjct: 59 YKALTLLEYLLKNGSERVVDDLREHIYIIRTLRDFHY 95
>gnl|CDD|188790 cd09406, LIM1_Leupaxin, The first LIM domain of Leupaxin. The
first LIM domain of Leupaxin: Leupaxin is a cytoskeleton
adaptor protein, which is preferentially expressed in
hematopoietic cells. Leupaxin belongs to the paxillin
focal adhesion protein family. Same as other members of
the family, it has four leucine-rich LD-motifs in the
N-terminus and four LIM domains in the C-terminus. It
may function in cell type-specific signaling by
associating with interaction partners PYK2, FAK, PEP and
p95PKL. When expressed in human leukocytic cells,
leupaxin significantly suppressed integrin-mediated cell
adhesion to fibronectin and the tyrosine phosphorylation
of paxillin. These findings indicate that leupaxin may
negatively regulate the functions of paxillin during
integrin signaling. LIM domains are 50-60 amino acids in
size and share two characteristic zinc finger motifs.
The two zinc fingers contain eight conserved residues,
mostly cysteines and histidines, which coordinately bond
to two zinc atoms. LIM domains function as adaptors or
scaffolds to support the assembly of multimeric protein
complexes.
Length = 55
Score = 28.7 bits (64), Expect = 0.64
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 323 QVITNVGKMWHAAQYISRSCRR 344
QV+T +G+ WH ++ C +
Sbjct: 13 QVVTALGQTWHPEHFVCCQCGK 34
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 29.6 bits (66), Expect = 2.6
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 5/86 (5%)
Query: 206 QVPTLPETPPNLLIQAELGSYVTPVVILPDPPSTSDPGDSMSPVTGDLVDISHTSSQNAS 265
T P T PP +S PG +P T +LVD +
Sbjct: 285 STATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQNLVDCKELDPPKPN 344
Query: 266 NAI--LGTFHDKSSTIFWQCASRLPL 289
+ +G ++ + C +PL
Sbjct: 345 SICYGVGIYN---EALPRGCDIVVPL 367
>gnl|CDD|183723 PRK12753, PRK12753, transketolase; Reviewed.
Length = 663
Score = 29.3 bits (66), Expect = 3.7
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 301 HVLHKILREGH-PHVIKESIKQAQVITN 327
HV+H+I +GH P IKE+I +AQ + +
Sbjct: 211 HVIHEI--DGHDPQAIKEAILEAQSVKD 236
>gnl|CDD|217027 pfam02424, ApbE, ApbE family. This prokaryotic family of
lipoproteins are related to ApbE from Salmonella
typhimurium. ApbE is involved in thiamine synthesis.
More specifically is may be involved in the conversion
of aminoimidazole ribotide (AIR) to
4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP).
Length = 255
Score = 28.7 bits (65), Expect = 4.4
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 81 NLILS----QSELDRIGENDINNYFQMSVEMFDYLDEILALQAAVFGSLDMS 128
+ ++S SEL R+ ++S E+ + L L L G+ D +
Sbjct: 5 DDLMSTYRPDSELSRLNRAAGGEPVKVSPELAEVLRAALRLSELSDGAFDPT 56
>gnl|CDD|214990 smart01041, BRO1, BRO1-like domain. This domain is found in a
number proteins including Rhophilin and BRO1. It is
known to have a role in endosomal targeting. ESCRT-III
subunit Snf7 binds to a conserved hydrophobic patch in
the BRO1 domain that is required for protein complex
formation and for the protein-sorting function of BRO1.
Length = 381
Score = 28.1 bits (63), Expect = 6.8
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 82 LILSQ--SELDRIGENDI---NNYFQMSVEMFDYLDEILALQAAVFGSLDMSRSN 131
+ SQ +E +R E + FQ + +F+YL E + S+D+S
Sbjct: 115 ALYSQIAAEQNRDTEEGLKEACKAFQQAAGVFNYLKENFLHALSTEPSVDLSPET 169
>gnl|CDD|224394 COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine
biosynthesis [Coenzyme metabolism].
Length = 337
Score = 28.1 bits (63), Expect = 7.2
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 85 SQSELDRIGENDINNYFQMSVEMFDYLDEILALQAAVFGSLDMS 128
SEL RI ++S ++++ L L L G+ D +
Sbjct: 75 PDSELSRINRAAGGKPVKVSPDLYELLKLALRLSELTDGAFDPT 118
>gnl|CDD|149404 pfam08332, CaMKII_AD, Calcium/calmodulin dependent protein kinase
II Association. This domain is found at the C-terminus
of the Calcium/calmodulin dependent protein kinases II
(CaMKII). These proteins also have a Ser/Thr protein
kinase domain (pfam00069) at their N-terminus. The
function of the CaMKII association domain is the
assembly of the single proteins into large (8 to 14
subunits) multimers.
Length = 128
Score = 27.0 bits (60), Expect = 7.9
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 3 SLSLPRVLQPRKTSLELERETFEKFQSASIGKAVNSQETPVKEKHFHLKDGYGKLIYQYT 62
+ P L LE R FE F + KAV+ T + H HL I Y
Sbjct: 33 TCFEPEALGNLVEGLEFHRFYFENFLTKR-PKAVH---TTILNPHVHLLGDDAACI-AYV 87
Query: 63 RLL 65
RL
Sbjct: 88 RLT 90
>gnl|CDD|223344 COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication,
recombination, and repair].
Length = 273
Score = 27.6 bits (62), Expect = 9.1
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 38 SQETPVKEKH----FHLKDGYGKLIYQYTR 63
++ P EKH F L DG L Y R
Sbjct: 84 ARGEPD-EKHDHVDFVLSDGKDVLRYNDPR 112
>gnl|CDD|192370 pfam09765, WD-3, WD-repeat region. This entry is of a region of
approximately 100 residues containing three WD repeats
and six cysteine residues possibly as three
cystine-bridges. These regions are contained within the
Fancl protein in humans which is the putative E3
ubiquitin ligase subunit of the FA complex (Fanconi
anaemia). Eight subunits of the Fanconi anaemia gene
products form a multisubunit nuclear complex which is
required for mono-ubiquitination of a downstream FA
protein, FANCD2. The WD repeats are required for
interaction with other subunits of the FA complex.
Length = 292
Score = 27.8 bits (62), Expect = 9.6
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 12/63 (19%)
Query: 156 DFCVKI---LFKLHASLPSEILAGHRSRFLKQFSQLRQFYMTSSTLQYFKHLIQVPTLPE 212
V L K +SL H ++FL+ L +FY + +++ PE
Sbjct: 160 PDPVPFSESLTKSQSSL-----QDHLNQFLQLLESLEEFYDNLDEIDELCWVLE----PE 210
Query: 213 TPP 215
P
Sbjct: 211 KPT 213
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.397
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,795,392
Number of extensions: 1680137
Number of successful extensions: 1267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1263
Number of HSP's successfully gapped: 24
Length of query: 355
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 257
Effective length of database: 6,590,910
Effective search space: 1693863870
Effective search space used: 1693863870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)