RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9623
         (355 letters)



>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 140

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 6/52 (11%), Positives = 14/52 (26%), Gaps = 1/52 (1%)

Query: 268 ILGTFHDKSSTIFW-QCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKES 318
           +        S               N +V +K     H ++  G+   ++  
Sbjct: 27  VHCANEPNVSIPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYL 78


>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid
           leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 131

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 7/75 (9%), Positives = 20/75 (26%), Gaps = 1/75 (1%)

Query: 260 SSQNASNAILGTFHDKSS-TIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKES 318
             ++    I  T     +               + +V +K     H ++  G+   I+  
Sbjct: 20  KKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYL 79

Query: 319 IKQAQVITNVGKMWH 333
             +  +      +  
Sbjct: 80  ASRNTLFNLSNFLDK 94


>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C
           [TaxId: 556]}
          Length = 353

 Score = 30.9 bits (69), Expect = 0.20
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 15/118 (12%)

Query: 209 TLPETPPNLLIQAELGS---------YVTPVVI----LPDPPSTSDPGDSMSPVTGDLVD 255
            + E    + I    GS           + VV+    +   P  +  GD +       V 
Sbjct: 83  EIKEFTKGITIIGANGSSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVW 142

Query: 256 ISHTSSQNASNAILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPH 313
           + H     A++   GT  + ++               V V++ + H + K+  +G   
Sbjct: 143 VDHNELFAANHECDGTPDNDTTFESAVDIKGAS--NTVTVSYNYIHGVKKVGLDGSSS 198


>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid
           leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 132

 Score = 26.6 bits (59), Expect = 2.3
 Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 180 RFLKQFSQLRQFYMTSSTLQYFKHLIQVPTLPETPPNLL 218
           +FL + +++ +F   +  +   +    +P L + P +LL
Sbjct: 90  KFLTRMTRISEFLKVAEQVGIDR--GDIPDLSQAPSSLL 126


>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 133

 Score = 26.6 bits (59), Expect = 2.7
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 180 RFLKQFSQLRQFYMTSSTLQYFKHLIQVPTLPETPPNLL 218
           +FL +  ++ +F   +  +   K    +P L + P +LL
Sbjct: 87  KFLVRMDRVGEFLKVAENVGIDK--GDIPDLTKAPSSLL 123


>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila
           melanogaster [TaxId: 7227]}
          Length = 62

 Score = 24.5 bits (53), Expect = 5.0
 Identities = 2/18 (11%), Positives = 7/18 (38%)

Query: 173 ILAGHRSRFLKQFSQLRQ 190
           +  G   +      +L++
Sbjct: 45  VTKGASHKLALCIDKLKE 62


>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII)
           {Escherichia coli [TaxId: 562]}
          Length = 150

 Score = 25.4 bits (56), Expect = 7.6
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 247 SPVTGDLVDISHTSSQNASNAILG 270
           +P++G++V+I        +  I+G
Sbjct: 6   APLSGEIVNIEDVPDVVFAEKIVG 29


>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
           {Mycoplasma capricolum [TaxId: 2095]}
          Length = 154

 Score = 25.5 bits (56), Expect = 8.4
 Identities = 4/25 (16%), Positives = 11/25 (44%)

Query: 246 MSPVTGDLVDISHTSSQNASNAILG 270
           ++P  G ++ +     +     +LG
Sbjct: 11  LAPCDGTIITLDEVEDEVFKERMLG 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,295,095
Number of extensions: 58961
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 13
Length of query: 355
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,226,816
Effective search space: 330013504
Effective search space used: 330013504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)