Query psy9625
Match_columns 394
No_of_seqs 190 out of 286
Neff 4.7
Searched_HMMs 46136
Date Sat Aug 17 00:32:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0980|consensus 100.0 8.7E-59 1.9E-63 493.1 30.5 250 93-349 717-979 (980)
2 smart00307 ILWEQ I/LWEQ domain 100.0 2E-58 4.3E-63 429.4 23.9 198 144-347 2-199 (200)
3 PF01608 I_LWEQ: I/LWEQ domain 100.0 2.5E-56 5.5E-61 399.8 15.2 151 194-347 1-151 (152)
4 KOG0980|consensus 100.0 2.7E-36 5.9E-41 321.9 14.5 161 1-184 770-930 (980)
5 smart00307 ILWEQ I/LWEQ domain 100.0 6.5E-35 1.4E-39 272.0 16.1 145 11-176 1-145 (200)
6 PF01608 I_LWEQ: I/LWEQ domain 99.9 6.1E-27 1.3E-31 210.4 11.9 100 77-178 1-100 (152)
7 KOG4261|consensus 99.2 1.5E-09 3.2E-14 117.1 20.8 257 17-280 592-888 (1003)
8 KOG4261|consensus 97.6 0.0048 1E-07 68.1 19.1 262 10-293 646-928 (1003)
9 PF09141 Talin_middle: Talin, 96.3 0.0072 1.6E-07 55.7 5.6 48 17-64 114-161 (161)
10 PF08913 VBS: Vinculin Binding 92.9 3.4 7.5E-05 36.7 13.0 85 204-290 33-122 (125)
11 PF08913 VBS: Vinculin Binding 92.4 2.9 6.3E-05 37.2 11.8 114 16-138 5-119 (125)
12 PF12205 GIT1_C: G protein-cou 90.6 2.3 5E-05 37.8 9.3 32 9-40 3-34 (123)
13 PF09141 Talin_middle: Talin, 89.4 7.2 0.00016 36.3 11.8 104 126-253 58-161 (161)
14 PF01044 Vinculin: Vinculin fa 88.6 55 0.0012 38.1 21.1 108 26-138 13-123 (968)
15 PF01044 Vinculin: Vinculin fa 87.0 68 0.0015 37.4 25.7 170 91-294 520-698 (968)
16 PF12205 GIT1_C: G protein-cou 85.3 27 0.00058 31.1 13.5 107 148-286 9-120 (123)
17 PF08824 Serine_rich: Serine r 69.0 99 0.0021 28.7 14.2 140 117-290 6-148 (159)
18 PF03623 Focal_AT: Focal adhes 60.9 1.3E+02 0.0029 27.4 12.1 117 156-292 7-129 (139)
19 PF03623 Focal_AT: Focal adhes 44.4 2.5E+02 0.0055 25.6 14.8 95 85-226 34-128 (139)
20 PRK15178 Vi polysaccharide exp 25.2 4.1E+02 0.0088 28.6 9.0 67 268-343 242-308 (434)
21 KOG3119|consensus 22.9 2E+02 0.0042 28.6 5.9 44 306-349 207-250 (269)
22 PRK11637 AmiB activator; Provi 21.9 9.1E+02 0.02 25.1 11.0 36 319-354 108-143 (428)
23 COG4312 Uncharacterized protei 21.6 1.3E+02 0.0029 29.7 4.3 29 315-343 17-45 (247)
24 PF08824 Serine_rich: Serine r 21.3 6.7E+02 0.014 23.3 11.3 116 21-138 11-145 (159)
25 PF10197 Cir_N: N-terminal dom 21.3 2E+02 0.0042 20.4 4.0 27 317-343 7-33 (37)
No 1
>KOG0980|consensus
Probab=100.00 E-value=8.7e-59 Score=493.14 Aligned_cols=250 Identities=40% Similarity=0.551 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-C------chhHhHHHH-HhHHHHHHHHHHHHHh-ccc----cccchHHHHHHHHHHHH
Q psy9625 93 KAVAMSAKYLLTAADQVVSGG-E------GAKLERLIV-ASHGVAASTAQLVVAS-RVK----AERNSVHLAALSQASRD 159 (394)
Q Consensus 93 kaVa~a~~~Lve~Ad~lv~g~-d------~~~~E~li~-AAk~VaAATaqLvaas-rvK----a~~~s~~~~~L~~Aa~a 159 (394)
..+...++.+.+.-+.+.+.. | +..+|.+|. +..+|.-++.+|.... +++ .....|++.+|. +..+
T Consensus 717 ~~l~~~lq~~~~~~eel~~~~~di~~e~l~~lld~ema~t~aAI~~A~~rie~~~~Kar~ss~~~~LeVne~iL~-~ct~ 795 (980)
T KOG0980|consen 717 MLLRQYLQTLNQLGEELLPKELDIDQELLGNLLDIEMAETDAAIEDAVSRIEAIAAKARESSSGVRLEVNESILS-ACTA 795 (980)
T ss_pred HHHHHHHHHHHHHhHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeeccHHHHH-HHHH
Confidence 366777788888888886665 2 568889999 7899999999998876 333 235669999999 9999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCccchhccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHH
Q psy9625 160 VTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLI 239 (394)
Q Consensus 160 Vt~A~~~LV~aA~~aq~~~EiV~qg~gs~~~t~~fy~k~~~WteGLISAAk~Va~at~~LveaA~~~v~g~~~~~~E~LI 239 (394)
+..|+..||++++.+| .|||..|+|+.+ ..+||+||+|||||||||||+||.++++|||+||++|+|+ |++|+||
T Consensus 796 lm~aI~~Lv~as~~lQ--~EIVasgrgsas-~~eFY~kNsrWTEGLISAaKAVa~aatvLVeaAdkvV~~~--gkfEeLI 870 (980)
T KOG0980|consen 796 LMEAIMALVKASRELQ--TEIVASGRGSAS-PNEFYKKNSRWTEGLISAAKAVAWAATVLVEAADKVVTGT--GKFEELI 870 (980)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHhcCCCCC-HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhhhHhcCC--CCcHHHH
Confidence 9999999999999999 899999999988 7999999999999999999999999999999999999999 9999999
Q ss_pred HHhhhhHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccchhHHHHHHHHHH
Q psy9625 240 VASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEA 319 (394)
Q Consensus 240 vaa~eVAAsTAQLv~AsrVKa~~~S~~~~~L~~Ask~V~~At~~LV~avk~~~~~~~~~~~~~d~s~ls~~~~k~~emE~ 319 (394)
||++||||||||||+|||||++.+|+.+++|+.|||+|++||+.||++++.+..+.++ ...+|||+||+|+.|++|||+
T Consensus 871 Vas~EIAAsTaQLVaASrVKA~k~S~~ld~L~~ask~Vtqat~~lVa~vks~~sq~e~-~~~~DFS~ls~h~~K~~EME~ 949 (980)
T KOG0980|consen 871 VASQEIAASTAQLVAASRVKADKDSKKLDALEVASKAVTQATAQLVASVKSGQSQLEQ-QQSLDFSSLSLHQLKTQEMEQ 949 (980)
T ss_pred HhhhHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh-ccccccccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887765 689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy9625 320 QVRVLELEAGLEKERLKLSALRRHHLLKKK 349 (394)
Q Consensus 320 Qv~ILklE~eLe~aR~kL~~iRk~~Y~~~~ 349 (394)
||+||+||+.|+++|.||++|||+||++++
T Consensus 950 QVkvLeLEq~L~~eR~rL~elRK~hY~~A~ 979 (980)
T KOG0980|consen 950 QVKVLELEQSLQAERARLGELRKQHYHNAD 979 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999875
No 2
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=100.00 E-value=2e-58 Score=429.41 Aligned_cols=198 Identities=45% Similarity=0.599 Sum_probs=189.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCccchhccccchhhhHHHHHHHHHHHHHHHHHHH
Q psy9625 144 ERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAA 223 (394)
Q Consensus 144 ~~~s~~~~~L~~Aa~aVt~A~~~LV~aA~~aq~~~EiV~qg~gs~~~t~~fy~k~~~WteGLISAAk~Va~at~~LveaA 223 (394)
+.+.+|+.||+ |+.+|++|+..||.+++.+| +|||.+|+|+.+ ..+||++|++|+||||||||+|+.+|+.||++|
T Consensus 2 ~~l~v~e~IL~-aa~~i~~a~~~Lv~aA~~~Q--~Eiv~~gr~~~~-~~~fY~kn~~w~EgLisAAkaV~~a~~~Lv~aA 77 (200)
T smart00307 2 VELEVDESILE-AAKAITKAIAALVKAATNAQ--REIVAQGRGGAS-PGEFYKKNSRWTEGLISAAKAVAAATNVLVEAA 77 (200)
T ss_pred CcccccHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHhccCCCC-cccccccCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999 99999999999999999999 999999999865 789999999999999999999999999999999
Q ss_pred HHhhcCCCCCchhHHHHHhhhhHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccc
Q psy9625 224 DQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDESADDLD 303 (394)
Q Consensus 224 ~~~v~g~~~~~~E~LIvaa~eVAAsTAQLv~AsrVKa~~~S~~~~~L~~Ask~V~~At~~LV~avk~~~~~~~~~~~~~d 303 (394)
|++++|. +++|+||+++++||++|+|||+|||||++++|+++++|+.||++|++||.+||+++|.+...+.++++.+|
T Consensus 78 ~~~~~g~--~~~E~LI~aAk~VAasTaQLVaAsrvka~~~S~~~~~L~~Ask~V~~At~~LVaaak~~~~~~~e~~~~~d 155 (200)
T smart00307 78 DGVVTGK--GSEEELIVAAKEVAASTAQLVAASRVKADKDSQAQDRLQAASKAVTNATANLVAAVKSGMIFDEEQEEEED 155 (200)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999876533356899
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9625 304 IASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHHLLK 347 (394)
Q Consensus 304 ~s~ls~~~~k~~emE~Qv~ILklE~eLe~aR~kL~~iRk~~Y~~ 347 (394)
|+++++|++|++|||+||+||+||++|++||++|++|||++|+.
T Consensus 156 ~s~l~~~~~k~~emE~Qv~IL~lE~~L~~ar~~L~~lRk~~Y~~ 199 (200)
T smart00307 156 FSKLSLHEGKTQEMEQQVEILKLENELEAARKKLAEIRKQHYEL 199 (200)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999985
No 3
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=100.00 E-value=2.5e-56 Score=399.76 Aligned_cols=151 Identities=56% Similarity=0.732 Sum_probs=130.8
Q ss_pred hhccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHhhhhHHHHHHHHHHHhhccCCCchhHHHHHHH
Q psy9625 194 FYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQA 273 (394)
Q Consensus 194 fy~k~~~WteGLISAAk~Va~at~~LveaA~~~v~g~~~~~~E~LIvaa~eVAAsTAQLv~AsrVKa~~~S~~~~~L~~A 273 (394)
||++|+|||||||||||+|+.+|++||++||++|+|+ +++|+|||++++||+||||||+|||||++++|+++.+|+.|
T Consensus 1 fY~~n~~WteGLISAAKaVa~at~~LveaA~~vv~g~--~~~E~LIvaa~eVAasTAQLv~AsrVKa~~~S~~~~~L~~A 78 (152)
T PF01608_consen 1 FYKKNSRWTEGLISAAKAVAAATNMLVEAADGVVQGT--GSEEELIVAAKEVAASTAQLVAASRVKADPNSKTQDRLEQA 78 (152)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHHHHHHHHHHHCTTS-TTSCCHHHHHHH
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9625 274 SRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHHLLK 347 (394)
Q Consensus 274 sk~V~~At~~LV~avk~~~~~~~~~~~~~d~s~ls~~~~k~~emE~Qv~ILklE~eLe~aR~kL~~iRk~~Y~~ 347 (394)
|++|++||++||++|+.+....++ .+.+||+++++|++|++|||+||+||+||++|++||+||++|||++|++
T Consensus 79 s~~V~~At~~LV~av~~~~~~~~~-~~~~d~s~ls~~~~k~~eMe~Qv~iL~lE~eLe~ar~kL~~lRk~~Y~~ 151 (152)
T PF01608_consen 79 SKAVKKATENLVAAVKAAIEQEEE-QEEVDFSKLSLHQAKRQEMEAQVRILKLEKELEKARKKLAELRKAHYHN 151 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHH-HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-hcccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999877655 4689999999999999999999999999999999999999999999986
No 4
>KOG0980|consensus
Probab=100.00 E-value=2.7e-36 Score=321.87 Aligned_cols=161 Identities=53% Similarity=0.733 Sum_probs=155.2
Q ss_pred CCccccCcCCCcccccchHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHhhhhHHHHHHHHHHccCCCCcchhhhhh
Q psy9625 1 MLTQSRRADTGVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASNTREFYKR 80 (394)
Q Consensus 1 ~~~~~~~~~~~~~l~v~e~iL~aa~~i~~a~~~Lv~~a~~~~~~~~~~~~~~~~~~~eaQ~eLV~~gr~s~~~~~~Fy~~ 80 (394)
|+.++|.+++|++|+||+.||++|++||.||..||++|+. +|.|||+.|||+++ ..+||++
T Consensus 770 ~~~Kar~ss~~~~LeVne~iL~~ct~lm~aI~~Lv~as~~------------------lQ~EIVasgrgsas-~~eFY~k 830 (980)
T KOG0980|consen 770 IAAKARESSSGVRLEVNESILSACTALMEAIMALVKASRE------------------LQTEIVASGRGSAS-PNEFYKK 830 (980)
T ss_pred HHHHhhhcCCCceeeccHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHhcCCCCC-HHHHHHh
Confidence 5678999999999999999999999999999999999999 99999999999998 7999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHhHHHHHhHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Q psy9625 81 NHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDV 160 (394)
Q Consensus 81 ~~swteGLISAakaVa~a~~~Lve~Ad~lv~g~d~~~~E~li~AAk~VaAATaqLvaasrvKa~~~s~~~~~L~~Aa~aV 160 (394)
|++||||||||+|+|+++++.||++||++|.| .+++|++|+|+++|+|+|+|||+|||||++.+|.+...|+.|+++|
T Consensus 831 NsrWTEGLISAaKAVa~aatvLVeaAdkvV~~--~gkfEeLIVas~EIAAsTaQLVaASrVKA~k~S~~ld~L~~ask~V 908 (980)
T KOG0980|consen 831 NSRWTEGLISAAKAVAWAATVLVEAADKVVTG--TGKFEELIVASQEIAASTAQLVAASRVKADKDSKKLDALEVASKAV 908 (980)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhhhHhcC--CCCcHHHHHhhhHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHh
Q psy9625 161 TNATGSVVATAKTCIHLAEIIMAH 184 (394)
Q Consensus 161 t~A~~~LV~aA~~aq~~~EiV~qg 184 (394)
+.||+.||..++.++ .++.+++
T Consensus 909 tqat~~lVa~vks~~--sq~e~~~ 930 (980)
T KOG0980|consen 909 TQATAQLVASVKSGQ--SQLEQQQ 930 (980)
T ss_pred HHHHHHHHHHHhhhh--hhHhhcc
Confidence 999999999999999 5565554
No 5
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=100.00 E-value=6.5e-35 Score=271.97 Aligned_cols=145 Identities=53% Similarity=0.696 Sum_probs=141.1
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHhhhhHHHHHHHHHHccCCCCcchhhhhhchhhHHHHHH
Q psy9625 11 GVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASNTREFYKRNHQWTEGLIS 90 (394)
Q Consensus 11 ~~~l~v~e~iL~aa~~i~~a~~~Lv~~a~~~~~~~~~~~~~~~~~~~eaQ~eLV~~gr~s~~~~~~Fy~~~~swteGLIS 90 (394)
|++|+|||.||++|++||+||..||++|+. +|+|||..||++.+ ..+||++|++|+|||||
T Consensus 1 ~~~l~v~e~IL~aa~~i~~a~~~Lv~aA~~------------------~Q~Eiv~~gr~~~~-~~~fY~kn~~w~EgLis 61 (200)
T smart00307 1 GVELEVDESILEAAKAITKAIAALVKAATN------------------AQREIVAQGRGGAS-PGEFYKKNSRWTEGLIS 61 (200)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHhccCCCC-cccccccCCcccHHHHH
Confidence 678999999999999999999999999999 99999999999877 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHhHHHHHhHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy9625 91 AAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVAT 170 (394)
Q Consensus 91 AakaVa~a~~~Lve~Ad~lv~g~d~~~~E~li~AAk~VaAATaqLvaasrvKa~~~s~~~~~L~~Aa~aVt~A~~~LV~a 170 (394)
|+++|+++++.||++|++++.| ..++|+||++|++|+++|+||+.+||||++++|.++.+|..|+++|++||..||.+
T Consensus 62 AAkaV~~a~~~Lv~aA~~~~~g--~~~~E~LI~aAk~VAasTaQLVaAsrvka~~~S~~~~~L~~Ask~V~~At~~LVaa 139 (200)
T smart00307 62 AAKAVAAATNVLVEAADGVVTG--KGSEEELIVAAKEVAASTAQLVAASRVKADKDSQAQDRLQAASKAVTNATANLVAA 139 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhH
Q psy9625 171 AKTCIH 176 (394)
Q Consensus 171 A~~aq~ 176 (394)
++.+..
T Consensus 140 ak~~~~ 145 (200)
T smart00307 140 VKSGMI 145 (200)
T ss_pred HHHHHH
Confidence 999874
No 6
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=99.94 E-value=6.1e-27 Score=210.40 Aligned_cols=100 Identities=57% Similarity=0.699 Sum_probs=94.6
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHhHHHHHhHHHHHHHHHHHHHhccccccchHHHHHHHHH
Q psy9625 77 FYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQA 156 (394)
Q Consensus 77 Fy~~~~swteGLISAakaVa~a~~~Lve~Ad~lv~g~d~~~~E~li~AAk~VaAATaqLvaasrvKa~~~s~~~~~L~~A 156 (394)
||++|++|+||||||+|+|+.+++.||++||++++| +.++|+||++|++|+++|+|||++||||++++|.++.+|+.|
T Consensus 1 fY~~n~~WteGLISAAKaVa~at~~LveaA~~vv~g--~~~~E~LIvaa~eVAasTAQLv~AsrVKa~~~S~~~~~L~~A 78 (152)
T PF01608_consen 1 FYKKNSRWTEGLISAAKAVAAATNMLVEAADGVVQG--TGSEEELIVAAKEVAASTAQLVAASRVKADPNSKTQDRLEQA 78 (152)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--S--HHHHHHHHHHHHHHHHHHHHHHCTTS-TTSCCHHHHHHH
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH
Q psy9625 157 SRDVTNATGSVVATAKTCIHLA 178 (394)
Q Consensus 157 a~aVt~A~~~LV~aA~~aq~~~ 178 (394)
+++|++||+.||++++.+....
T Consensus 79 s~~V~~At~~LV~av~~~~~~~ 100 (152)
T PF01608_consen 79 SKAVKKATENLVAAVKAAIEQE 100 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998533
No 7
>KOG4261|consensus
Probab=99.20 E-value=1.5e-09 Score=117.06 Aligned_cols=257 Identities=21% Similarity=0.240 Sum_probs=194.4
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHhhhhHHHHHHHHHHccCCCCcchhhhhhchhhHHHHHHHHHHHH
Q psy9625 17 NEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVA 96 (394)
Q Consensus 17 ~e~iL~aa~~i~~a~~~Lv~~a~~~~~~~~~~~~~~~~~~~eaQ~eLV~~gr~s~~~~~~Fy~~~~swteGLISAakaVa 96 (394)
-..+|++++.+.-|++.|.+.+.+.+.+|++.+..++-.+++++-.++.-+-+.. ..+..+-+||...++.|+
T Consensus 592 g~~ll~a~~~l~~A~s~~l~~~~p~s~~~~~~~~~~a~~vg~~s~~~l~i~e~~~-------~g~~~f~d~l~asakavA 664 (1003)
T KOG4261|consen 592 GGDLLDAAKKLCGAFSDLLKAVQPESEEPRQEVLRAAGHVGEASGHLLNIGEAMA-------SGSAGFPDGLMASAKAVA 664 (1003)
T ss_pred CchHHHHHHHHhhhHHHHHhhcCCCCCCCchhHhHhhcccccchhhhhhhhcccC-------CcccCcchhhhhchhhhh
Confidence 4578999999999999999999999999999999999999999999998443332 233446799999999999
Q ss_pred HHHHHHHHHHHHhhcCCC-chhHhHHHHHhHHHHHHHHHHHHHhcccc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9625 97 MSAKYLLTAADQVVSGGE-GAKLERLIVASHGVAASTAQLVVASRVKA--ERNSVHLAALSQASRDVTNATGSVVATAKT 173 (394)
Q Consensus 97 ~a~~~Lve~Ad~lv~g~d-~~~~E~li~AAk~VaAATaqLvaasrvKa--~~~s~~~~~L~~Aa~aVt~A~~~LV~aA~~ 173 (394)
.++..|+.-|..++.--| ...-+++|.+|-..+.+|.|||+..+|=+ ..++.+|.+|..|++-|..++.+++.+++.
T Consensus 665 ~~~aalvl~aK~iaavcDd~~~q~rVIaaatqcAlaTsqLVacakvvspTi~~~~cQeQl~~aar~v~~SV~~~~~~sq~ 744 (1003)
T KOG4261|consen 665 NATAALVLKAKNIAAVCDDCQLQNRVIAAATQCALATSQLVACAKVVSPTISNPACQEQLTEAARLVGRSVNNLVVASQA 744 (1003)
T ss_pred hhhHHHhhhhhhHHHhcccHHHHHHHHHHHHHHHhhhccceeeecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999977655 66788999999999999999998877664 467799999999999999999999988776
Q ss_pred hhH------------------HHHHHHHhcCCCC------Cccchhccccch----------hhhHHHHHHHHHHHHHHH
Q psy9625 174 CIH------------------LAEIIMAHHGSAS------NTREFYKRNHQW----------TEGLISAAKAVAMSAKYL 219 (394)
Q Consensus 174 aq~------------------~~EiV~qg~gs~~------~t~~fy~k~~~W----------teGLISAAk~Va~at~~L 219 (394)
+.. +.++...-+.+.. ...+.|.-+-.- .+-++-+|+.++.+|+.|
T Consensus 745 a~~d~~ll~dvlaaa~dVs~aLtelleHak~~a~~~tp~~~~eq~~~~~~~rttri~~s~gd~~emvR~Ar~l~qttqlL 824 (1003)
T KOG4261|consen 745 ATGDFGLLGDVLAAARDVSQALTELLEHAKYSAAVATPRGRYEQATDEILYRTTRIFVSMGDAGEMVRQARLLAQTTQLL 824 (1003)
T ss_pred hccChhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCceeEEEEeeeeeecCCHHHHHHHhHHhhhcHHHH
Confidence 543 2233322222221 133444333222 345778888888888888
Q ss_pred HHHHHHhhcCCCC-CchhHHHHHhhhhHHHHHHHHHHHhhcc-C-CCchhHHHHHHHHHHHHHH
Q psy9625 220 LTAADQVVSGGEG-AKLERLIVASHGVAASTAQLVVASRVKA-E-RNSVHLAALSQASRDVTNA 280 (394)
Q Consensus 220 veaA~~~v~g~~~-~~~E~LIvaa~eVAAsTAQLv~AsrVKa-~-~~S~~~~~L~~Ask~V~~A 280 (394)
++.-.+.-.+... ..-+.|.++++.++-||+|+|-|.+-=+ + .+...+.+|..|+.....+
T Consensus 825 ve~~qgeA~~~~dle~~~~Llsaak~ladstaqmvlaak~ass~p~~~~~q~rlrkaAe~lr~~ 888 (1003)
T KOG4261|consen 825 VEASQGEAEQEKDLENSCKLLSAAKRLADSTAQMVLAAKGASSNPSAEDQQQRLRKAAEGLRAA 888 (1003)
T ss_pred HHHHhhhhhcccchhhHHHHHhHHhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHhhHHHHHH
Confidence 8877776666510 1346788888888888888888865433 2 2336677888777544433
No 8
>KOG4261|consensus
Probab=97.60 E-value=0.0048 Score=68.06 Aligned_cols=262 Identities=18% Similarity=0.163 Sum_probs=140.6
Q ss_pred CCcccccchHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHhhhhHHH-------HHHHHHHccCCCCcchhhhhhch
Q psy9625 10 TGVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEA-------QAEIIMAHHGSASNTREFYKRNH 82 (394)
Q Consensus 10 ~~~~l~v~e~iL~aa~~i~~a~~~Lv~~a~~~~~~~~~~~~~~~~~~~ea-------Q~eLV~~gr~s~~~~~~Fy~~~~ 82 (394)
...+-.|++.++..++...++...||..|..=.+ .-.=-+.++++|.+ -..||.+++.++.. . .++
T Consensus 646 ~~g~~~f~d~l~asakavA~~~aalvl~aK~iaa--vcDd~~~q~rVIaaatqcAlaTsqLVacakvvspT-i----~~~ 718 (1003)
T KOG4261|consen 646 ASGSAGFPDGLMASAKAVANATAALVLKAKNIAA--VCDDCQLQNRVIAAATQCALATSQLVACAKVVSPT-I----SNP 718 (1003)
T ss_pred CCcccCcchhhhhchhhhhhhhHHHhhhhhhHHH--hcccHHHHHHHHHHHHHHHhhhccceeeecccccc-c----CcH
Confidence 3445569999999999999999999998876111 11112344444443 34467777766552 1 222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHhHHHHHhHHHHHHHHHHHHHh----ccccccchHHHHHHHHHHH
Q psy9625 83 QWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVAS----RVKAERNSVHLAALSQASR 158 (394)
Q Consensus 83 swteGLISAakaVa~a~~~Lve~Ad~lv~g~d~~~~E~li~AAk~VaAATaqLvaas----rvKa~~~s~~~~~L~~Aa~ 158 (394)
--.+.|+.+++.|+.+.++++..++.-+.- ....-...++|+.|..|-.-|+.-. ++-++--+..+.-+.. .
T Consensus 719 ~cQeQl~~aar~v~~SV~~~~~~sq~a~~d--~~ll~dvlaaa~dVs~aLtelleHak~~a~~~tp~~~~eq~~~~~--~ 794 (1003)
T KOG4261|consen 719 ACQEQLTEAARLVGRSVNNLVVASQAATGD--FGLLGDVLAAARDVSQALTELLEHAKYSAAVATPRGRYEQATDEI--L 794 (1003)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCcee--E
Confidence 233777888888888888877776654322 3333344445555544433333221 0001101111111100 0
Q ss_pred HHHHHH-------HHHHHHHHHh-hHHHHHHHHhcCCCCCccchhccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy9625 159 DVTNAT-------GSVVATAKTC-IHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGG 230 (394)
Q Consensus 159 aVt~A~-------~~LV~aA~~a-q~~~EiV~qg~gs~~~t~~fy~k~~~WteGLISAAk~Va~at~~LveaA~~~v~g~ 230 (394)
-++.-| ..+|++++.. |....++.+-+|- .--.++-.-+.-|.||||.++.+|..+++++.+.-..
T Consensus 795 ~rttri~~s~gd~~emvR~Ar~l~qttqlLve~~qge-----A~~~~dle~~~~Llsaak~ladstaqmvlaak~ass~- 868 (1003)
T KOG4261|consen 795 YRTTRIFVSMGDAGEMVRQARLLAQTTQLLVEASQGE-----AEQEKDLENSCKLLSAAKRLADSTAQMVLAAKGASSN- 868 (1003)
T ss_pred EEEeeeeeecCCHHHHHHHhHHhhhcHHHHHHHHhhh-----hhcccchhhHHHHHhHHhhhhhhHHHHHHHHhhhcCC-
Confidence 000000 1455555443 3344455443332 2233444567889999999999999999999987766
Q ss_pred CCCchhHHHHHhhhhHHHHHHHHHHHhhccC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9625 231 EGAKLERLIVASHGVAASTAQLVVASRVKAE--RNSVHLAALSQASRDVTNATGSVVATAKTCIH 293 (394)
Q Consensus 231 ~~~~~E~LIvaa~eVAAsTAQLv~AsrVKa~--~~S~~~~~L~~Ask~V~~At~~LV~avk~~~~ 293 (394)
.+.++=.+.-+++|-+ |.++++.=+. .--....+|+.|++.---+...-|.+++.+..
T Consensus 869 --p~~~~~q~rlrkaAe~---lr~~Tn~Aaq~aikq~i~qrLefAaKqaa~~aTqtISAaq~Avq 928 (1003)
T KOG4261|consen 869 --PSAEDQQQRLRKAAEG---LRAATNAAAQNAIKQKIVQRLEFAAKQAAAAATQTISAAQNAVQ 928 (1003)
T ss_pred --chhHHHHHHHHHhhHH---HHHHhHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Confidence 3555444444444422 2222211010 01134578998888766655556666655543
No 9
>PF09141 Talin_middle: Talin, middle domain; InterPro: IPR015224 This domain adopts a structure consisting of five alpha helices that fold into a bundle. It contains a Vinculin binding site (VBS) composed of a hydrophobic surface spanning five turns of helix four. Activation of the VBS causes subsequent recruitment of Vinculin, which enables maturation of small integrin/talin complexes into more stable adhesions. Formation of the complex between VBS and Vinculin requires prior unfolding of this middle domain: once released from the talin hydrophobic core, the VBS helix is then available to induce the 'bundle conversion' conformational change within the vinculin head domain thereby displacing the intramolecular interaction with the vinculin tail, allowing vinculin to bind actin []. ; GO: 0005200 structural constituent of cytoskeleton, 0007016 cytoskeletal anchoring at plasma membrane, 0001726 ruffle, 0005925 focal adhesion; PDB: 1SJ8_A 1T01_B 1SJ7_A 1SYQ_B.
Probab=96.31 E-value=0.0072 Score=55.69 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHhhhhHHHHHHHH
Q psy9625 17 NEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEII 64 (394)
Q Consensus 17 ~e~iL~aa~~i~~a~~~Lv~~a~~~~~~~~~~~~~~~~~~~eaQ~eLV 64 (394)
-+.||++++.|..||++|++.+.+...+||++|+.|+.+++++...|+
T Consensus 114 ~~~Ll~Aar~L~~A~sdll~sa~p~~~e~Rq~ll~AA~~vg~as~~lL 161 (161)
T PF09141_consen 114 GDKLLDAARKLCGAFSDLLKSAEPESKEPRQNLLEAASRVGEASGQLL 161 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTSTTT-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHhhccC
Confidence 368999999999999999999999999999999999999999988764
No 10
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=92.91 E-value=3.4 Score=36.67 Aligned_cols=85 Identities=20% Similarity=0.212 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchh---HHHHHhhhhHHHHHHHHHHHhh-ccCCCch-hHHHHHHHHHHHH
Q psy9625 204 GLISAAKAVAMSAKYLLTAADQVVSGGEGAKLE---RLIVASHGVAASTAQLVVASRV-KAERNSV-HLAALSQASRDVT 278 (394)
Q Consensus 204 GLISAAk~Va~at~~LveaA~~~v~g~~~~~~E---~LIvaa~eVAAsTAQLv~AsrV-Ka~~~S~-~~~~L~~Ask~V~ 278 (394)
-|-.+|+.+..--+.|++.+.+...-. .+.| +|..+.+++.-++.-||-++.. ..+|+.+ .++.|-.++|.|.
T Consensus 33 eL~~la~~lt~~y~~La~~~~~aaat~--~~~ev~~~i~~~vq~LG~sc~~Lv~aag~~~~~P~d~~~k~~L~~~AR~v~ 110 (125)
T PF08913_consen 33 ELGTLANDLTHDYSQLAQDAKGAAATT--PSAEVQNRIKSAVQDLGMSCIELVQAAGAVQSNPSDPYAKRELADAARAVS 110 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCCS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCchhHHHHHHHHHHHHH
Confidence 466667777777777777777766655 3443 6778888888888888777644 4467665 4788888888888
Q ss_pred HHHHHHHHHHHH
Q psy9625 279 NATGSVVATAKT 290 (394)
Q Consensus 279 ~At~~LV~avk~ 290 (394)
+....|+++-+.
T Consensus 111 EkVs~VlaaLqa 122 (125)
T PF08913_consen 111 EKVSQVLAALQA 122 (125)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhh
Confidence 888888776543
No 11
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=92.40 E-value=2.9 Score=37.16 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=67.2
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHhhhhHHHHHHHHHHccCCCCcchhhhhhchhhHHHHHHHHHHH
Q psy9625 16 VNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAV 95 (394)
Q Consensus 16 v~e~iL~aa~~i~~a~~~Lv~~a~~~~~~~~~~~~~~~~~~~eaQ~eLV~~gr~s~~~~~~Fy~~~~swteGLISAakaV 95 (394)
....+.+.|+.|......|+.++..+.+ .|-.+.+..-..=.+|...+++.... -.+..-..-|.++.+.+
T Consensus 5 yQt~mv~~ak~ia~~a~emv~ks~~~p~----eL~~la~~lt~~y~~La~~~~~aaat-----~~~~ev~~~i~~~vq~L 75 (125)
T PF08913_consen 5 YQTRMVEAAKEIARTAQEMVTKSRTNPE----ELGTLANDLTHDYSQLAQDAKGAAAT-----TPSAEVQNRIKSAVQDL 75 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHHHHHHHHHHHHCC-----SSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCChH----HHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHH
Confidence 3467899999999999999998777332 34455555555555666666654432 11223335567777888
Q ss_pred HHHHHHHHHHHHHhhc-CCCchhHhHHHHHhHHHHHHHHHHHHH
Q psy9625 96 AMSAKYLLTAADQVVS-GGEGAKLERLIVASHGVAASTAQLVVA 138 (394)
Q Consensus 96 a~a~~~Lve~Ad~lv~-g~d~~~~E~li~AAk~VaAATaqLvaa 138 (394)
+.++-.|++.+-.+-. .+|....-+|..+|+.|.....+++++
T Consensus 76 G~sc~~Lv~aag~~~~~P~d~~~k~~L~~~AR~v~EkVs~Vlaa 119 (125)
T PF08913_consen 76 GMSCIELVQAAGAVQSNPSDPYAKRELADAARAVSEKVSQVLAA 119 (125)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777666421 101112222333555555555555544
No 12
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=90.64 E-value=2.3 Score=37.78 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=26.7
Q ss_pred CCCcccccchHHHHHHHHHHHHHHHHHhcCCC
Q psy9625 9 DTGVKLEVNEKILDSCTTLMKAIRILVQKSPD 40 (394)
Q Consensus 9 ~~~~~l~v~e~iL~aa~~i~~a~~~Lv~~a~~ 40 (394)
.++..|.+.|.+......|+.+|..|+.+|..
T Consensus 3 ~~~~~~p~~e~Vi~~TE~vTk~IqeLl~aAQ~ 34 (123)
T PF12205_consen 3 EPDPNLPSTEDVIRRTEQVTKRIQELLRAAQE 34 (123)
T ss_dssp S-BSS-S-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999887
No 13
>PF09141 Talin_middle: Talin, middle domain; InterPro: IPR015224 This domain adopts a structure consisting of five alpha helices that fold into a bundle. It contains a Vinculin binding site (VBS) composed of a hydrophobic surface spanning five turns of helix four. Activation of the VBS causes subsequent recruitment of Vinculin, which enables maturation of small integrin/talin complexes into more stable adhesions. Formation of the complex between VBS and Vinculin requires prior unfolding of this middle domain: once released from the talin hydrophobic core, the VBS helix is then available to induce the 'bundle conversion' conformational change within the vinculin head domain thereby displacing the intramolecular interaction with the vinculin tail, allowing vinculin to bind actin []. ; GO: 0005200 structural constituent of cytoskeleton, 0007016 cytoskeletal anchoring at plasma membrane, 0001726 ruffle, 0005925 focal adhesion; PDB: 1SJ8_A 1T01_B 1SJ7_A 1SYQ_B.
Probab=89.44 E-value=7.2 Score=36.26 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCccchhccccchhhhH
Q psy9625 126 HGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGL 205 (394)
Q Consensus 126 k~VaAATaqLvaasrvKa~~~s~~~~~L~~Aa~aVt~A~~~LV~aA~~aq~~~EiV~qg~gs~~~t~~fy~k~~~WteGL 205 (394)
-++.++|+|++.+.-. ++..++-..+..|--.|..-+..+.+.++..- .++ .|..-.+.|
T Consensus 58 aAm~AatAqvv~~Ta~--~~~~~d~tavgaAittIssnl~em~k~vr~la---aL~---------------d~~~~~~~L 117 (161)
T PF09141_consen 58 AAMNAATAQVVNLTAG--NPEETDYTAVGAAITTISSNLPEMAKGVRMLA---ALM---------------DDEGDGDKL 117 (161)
T ss_dssp HHHHHHHHHHHHHTTS--STSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---------------HHTT--HHH
T ss_pred HHHHHHHHHHHHHhcC--CccccchhhHHHHHHHHHHhhHHHHHHHHHHH---Hhc---------------CCcccHHHH
Confidence 4678899999987521 33444444554344444444555555555433 222 122235789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHhhhhHHHHHHHH
Q psy9625 206 ISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLV 253 (394)
Q Consensus 206 ISAAk~Va~at~~LveaA~~~v~g~~~~~~E~LIvaa~eVAAsTAQLv 253 (394)
+.|+|..++++.-|+.++.--. ..+.-.|..++..|+.+.-||+
T Consensus 118 l~Aar~L~~A~sdll~sa~p~~----~e~Rq~ll~AA~~vg~as~~lL 161 (161)
T PF09141_consen 118 LDAARKLCGAFSDLLKSAEPES----KEPRQNLLEAASRVGEASGQLL 161 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTT-----SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCc----cccHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999854422 1466677788888877777764
No 14
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=88.56 E-value=55 Score=38.10 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCC-c-hhhhhHHHHHHhhhhHHHHHHHHHHccCCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHHH
Q psy9625 26 TLMKAIRILVQKSPD-D-LDIASLSLHQARRLEMEAQAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLL 103 (394)
Q Consensus 26 ~i~~a~~~Lv~~a~~-~-~~~~~~~~~~~~~~~~eaQ~eLV~~gr~s~~~~~~Fy~~~~swteGLISAakaVa~a~~~Lv 103 (394)
.|...++.||..-.. + ...+..+++.....+.++-..||..|...+. -.++.--.+.+..|...|..+...|.
T Consensus 13 Pl~~qVt~Lv~~~e~~~~~~~~~~~~~~~~~aV~~Av~~lv~vg~~ia~-----~~~d~~lk~eM~~A~~~v~~ag~~l~ 87 (968)
T PF01044_consen 13 PLAQQVTTLVITHEESEKSKGASPDLQRPVQAVEEAVENLVEVGEEIAN-----ESPDEILKQEMPEACEEVRDAGKNLL 87 (968)
T ss_dssp HHHHHHHHHHHHHHTTCTTTSTSGGTHHHHHHHHHHHHHHHHHHHHHHH-----H-SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccc
Confidence 466777777765321 1 2334556666666666666667766643321 01111123666666677777777777
Q ss_pred HHHHHhhcCCC-chhHhHHHHHhHHHHHHHHHHHHH
Q psy9625 104 TAADQVVSGGE-GAKLERLIVASHGVAASTAQLVVA 138 (394)
Q Consensus 104 e~Ad~lv~g~d-~~~~E~li~AAk~VaAATaqLvaa 138 (394)
+++..+..... ...-..++.+|+.|=.+|.+|+.+
T Consensus 88 ~aa~~l~~dP~s~~~R~~lv~aar~lL~~vt~lLll 123 (968)
T PF01044_consen 88 QAAQELRDDPCSSPKRKKLVRAARGLLSGVTRLLLL 123 (968)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 77666644321 222233444666666666666654
No 15
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=86.98 E-value=68 Score=37.38 Aligned_cols=170 Identities=15% Similarity=0.186 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC--CchhHhHHHHHhHHHHHHHHHHHHHhccc-cccc-hHHHHHHHHHHHHHHHHHHH
Q psy9625 91 AAKAVAMSAKYLLTAADQVVSGG--EGAKLERLIVASHGVAASTAQLVVASRVK-AERN-SVHLAALSQASRDVTNATGS 166 (394)
Q Consensus 91 AakaVa~a~~~Lve~Ad~lv~g~--d~~~~E~li~AAk~VaAATaqLvaasrvK-a~~~-s~~~~~L~~Aa~aVt~A~~~ 166 (394)
.+..+......|+++|.-+...+ |...++....++.++..-+.|++.+.+.- .+|. ......|+.--.+-..++..
T Consensus 520 ~a~~F~~ha~~l~~vA~lva~~s~~d~~~v~~I~~aa~~l~~L~pqvi~Aa~~l~~~P~sk~A~e~le~~~~~W~~~v~~ 599 (968)
T PF01044_consen 520 KAQNFQEHADQLVEVARLVAAMSCTDEETVKEIRHAAEQLEKLTPQVINAARILAANPSSKAAKEHLEVFREAWEDAVED 599 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 34446677788888887775542 34556666668889999999999887533 3343 45567777666677777888
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCCccchhccccchhhhHHHHHHHHHHHHHHHHHH---HHHhhcCCCCCchhHHHHHhh
Q psy9625 167 VVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTA---ADQVVSGGEGAKLERLIVASH 243 (394)
Q Consensus 167 LV~aA~~aq~~~EiV~qg~gs~~~t~~fy~k~~~WteGLISAAk~Va~at~~Lvea---A~~~v~g~~~~~~E~LIvaa~ 243 (394)
|..++-.+..+.+.+. .+-..+.+- +...+.. +.++++...+.
T Consensus 600 L~~~vd~i~d~~eFl~-------------------------------vSe~~i~~d~~~c~~Al~~---~d~~~~~~~a~ 645 (968)
T PF01044_consen 600 LTEAVDEITDVDEFLA-------------------------------VSEEHILKDVDKCEKALRS---GDPQELDRAAS 645 (968)
T ss_dssp HHHHHHCTS-HHHHHH-------------------------------HHHHHHHHHHHHHHHHHHT---T-HHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHh---CCHHHHHHHHH
Confidence 8777776665555443 222222211 2222333 47888888888
Q ss_pred hhHHHHHHHHHHH--hhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9625 244 GVAASTAQLVVAS--RVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHL 294 (394)
Q Consensus 244 eVAAsTAQLv~As--rVKa~~~S~~~~~L~~Ask~V~~At~~LV~avk~~~~~ 294 (394)
.++.-+.+.+-.. -+.-..+.....+|..+.+.+.++.-.+|..++.+...
T Consensus 646 ~I~~ra~rV~~va~~e~dn~eDp~y~~~v~~a~~~L~~~i~~~v~~ak~va~n 698 (968)
T PF01044_consen 646 SIAGRANRVIQVAKREMDNSEDPIYRNRVLEAIDQLEQAIPPMVAAAKEVATN 698 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8888777753333 23334555667888888888888888888888887654
No 16
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=85.32 E-value=27 Score=31.13 Aligned_cols=107 Identities=11% Similarity=0.171 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCccchhccccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy9625 148 VHLAALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVV 227 (394)
Q Consensus 148 ~~~~~L~~Aa~aVt~A~~~LV~aA~~aq~~~EiV~qg~gs~~~t~~fy~k~~~WteGLISAAk~Va~at~~LveaA~~~v 227 (394)
.+...+......||+++..|+.+|+.-++ + -.+..+..+..+.+.|+. ++
T Consensus 9 p~~e~Vi~~TE~vTk~IqeLl~aAQ~~~~--~------------------------s~~pcae~I~~aV~~m~~----Lf 58 (123)
T PF12205_consen 9 PSTEDVIRRTEQVTKRIQELLRAAQEGRH--D------------------------SFAPCAERIRSAVTEMAA----LF 58 (123)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHTT-H--H------------------------HHHHHHHHHHHHHHHHHH----TS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccc--c------------------------cchhHHHHHHHHHHHHHH----hC
Confidence 44555666888999999999999886441 1 123344444444444443 33
Q ss_pred cCCCCCchhHHHHHhhhhHHHHHHHHHHHhhccCCCc-----hhHHHHHHHHHHHHHHHHHHHH
Q psy9625 228 SGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNS-----VHLAALSQASRDVTNATGSVVA 286 (394)
Q Consensus 228 ~g~~~~~~E~LIvaa~eVAAsTAQLv~AsrVKa~~~S-----~~~~~L~~Ask~V~~At~~LV~ 286 (394)
=.. ...|.+-.+-+.+.+++..|-+-|+-=...++ .....+-.++=.|.+|++.||-
T Consensus 59 P~~--~~~e~vr~~L~~L~~~~~~Lq~eC~~~~~~~~~~~~~~~t~qvi~~AYdIAKAaKqLvT 120 (123)
T PF12205_consen 59 PKD--PRSETVRSSLRQLTSSAYRLQAECQKAQPEDDAVDIQLVTQQVIQCAYDIAKAAKQLVT 120 (123)
T ss_dssp -SS--B--HHHHHHHHHHHHHHHHHHHHHHS---S--SS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCc--cCChHHHHHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233 56788888899999999999999954333221 1235666777777788877775
No 17
>PF08824 Serine_rich: Serine rich protein interaction domain; InterPro: IPR014928 This is a serine rich protein that is found in the docking protein p130(cas) (Crk-associated substrate). The protein folds into a four helix bundle which is associated with protein-protein interactions []. ; PDB: 2L81_A 1Z23_A.
Probab=68.99 E-value=99 Score=28.72 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=100.7
Q ss_pred hHhHHHHHhHHHHHHHHHHHHHhccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCccc
Q psy9625 117 KLERLIVASHGVAASTAQLVVASRVK---AERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTRE 193 (394)
Q Consensus 117 ~~E~li~AAk~VaAATaqLvaasrvK---a~~~s~~~~~L~~Aa~aVt~A~~~LV~aA~~aq~~~EiV~qg~gs~~~t~~ 193 (394)
..|.++.--++|+++.+.|...-..+ ...++.|-..|..|...|..+...++.-|+.+. ...
T Consensus 6 A~e~L~~LQ~~v~~sVs~L~~fvs~~WR~~~~le~~i~~Ir~a~~~v~~sl~~fl~FArga~---------------~NA 70 (159)
T PF08824_consen 6 AMETLSRLQQEVESSVSNLMSFVSSNWRSPESLERHINEIRAAVDRVRASLREFLDFARGAL---------------ANA 70 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSTT-CCCHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH---------------CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHH---------------HHH
Confidence 45566666678888898887664221 334667777788888899999998888888766 355
Q ss_pred hhccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHhhhhHHHHHHHHHHHhhccCCCchhHHHHHHH
Q psy9625 194 FYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQA 273 (394)
Q Consensus 194 fy~k~~~WteGLISAAk~Va~at~~LveaA~~~v~g~~~~~~E~LIvaa~eVAAsTAQLv~AsrVKa~~~S~~~~~L~~A 273 (394)
.|-.|..=..-|--..+.+-.+-+.|.++...+=..+ .+.+-|.. -|....+..++++=.+
T Consensus 71 ~~~~D~~L~~kL~~qLq~l~ds~qiL~~~~q~Ld~~~--Wsl~~La~-----------------~k~~~~~DdLDrfVmv 131 (159)
T PF08824_consen 71 SNLSDRNLQAKLRRQLQPLEDSYQILLQTSQALDSCN--WSLDVLAR-----------------DKPQNKPDDLDRFVMV 131 (159)
T ss_dssp TTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TSHHHHTT-------------------SS-TCHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHhc-----------------CCCCCCcchHHHHHHH
Confidence 6666766677777788888899999999888887776 66665432 2555677778888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9625 274 SRDVTNATGSVVATAKT 290 (394)
Q Consensus 274 sk~V~~At~~LV~avk~ 290 (394)
+|.|.+=|+.|+.-+..
T Consensus 132 aR~vpdD~kqlas~I~~ 148 (159)
T PF08824_consen 132 ARTVPDDAKQLASFIQG 148 (159)
T ss_dssp HCCHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHh
Confidence 88888888888776644
No 18
>PF03623 Focal_AT: Focal adhesion targeting region; InterPro: IPR005189 Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signalling complexes that are formed following engagement of the extracellular matrix by integrins. The C-terminal "focal adhesion targeting" (FAT) region is necessary and sufficient for localizing FAK to focal adhesions. The crystal structure of FAT shows it forms a four-helix bundle that resembles those found in two other proteins involved in cell adhesion, alpha-catenin and vinculin []. The binding of FAT to the focal adhesion protein, paxillin, requires the integrity of the helical bundle, whereas binding to another focal adhesion protein, talin, does not.; GO: 0004713 protein tyrosine kinase activity, 0004871 signal transducer activity, 0006468 protein phosphorylation, 0007172 signal complex assembly, 0005925 focal adhesion; PDB: 1K05_C 1OW8_C 1OW7_C 3S9O_C 3B71_B 1K04_A 1OW6_C 3GM1_B 3GM3_A 3GM2_A ....
Probab=60.87 E-value=1.3e+02 Score=27.38 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCccchhccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q psy9625 156 ASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKL 235 (394)
Q Consensus 156 Aa~aVt~A~~~LV~aA~~aq~~~EiV~qg~gs~~~t~~fy~k~~~WteGLISAAk~Va~at~~LveaA~~~v~g~~~~~~ 235 (394)
+.-.|-.++-.+|+++.... +++ .. .+ .++.+..+|.|+.+...|+...|.++.-=.....
T Consensus 7 ~~D~Vy~at~~VVkaV~~Ls--~~v-----~~-----------~~-~~~y~~~VK~VG~~Lr~Ll~sVd~~~~~l~~s~~ 67 (139)
T PF03623_consen 7 TNDKVYDATTGVVKAVMQLS--NSV-----QT-----------AK-PEEYVDLVKNVGLALRDLLTSVDQILPSLPSSVR 67 (139)
T ss_dssp TTHHHHHHHHHHHHHHHHHH--HHT-----TT-----------SS-HHHHHHHHHHHHHHHHHHHHHHHHHGGGSHTTSH
T ss_pred ccChHHHHHHHHHHHHHHHH--hhh-----cc-----------CC-hHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 44567778888888888776 221 11 11 7889999999999999999999988766211356
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhhccCCCchh------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9625 236 ERLIVASHGVAASTAQLVVASRVKAERNSVH------LAALSQASRDVTNATGSVVATAKTCI 292 (394)
Q Consensus 236 E~LIvaa~eVAAsTAQLv~AsrVKa~~~S~~------~~~L~~Ask~V~~At~~LV~avk~~~ 292 (394)
.|+--+=+-+++.-+||+.+-|- +..++.+ ...+-.++-.+.=-|++|...+-++.
T Consensus 68 ~EVema~klL~~DM~eLi~~mkl-aq~~~~ttl~~eyrr~ml~aah~LA~daKnLlD~VD~aR 129 (139)
T PF03623_consen 68 REVEMAHKLLSKDMAELISAMKL-AQQNSNTTLDEEYRRQMLSAAHVLAMDAKNLLDVVDQAR 129 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhcCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 66666668889999999998743 4344433 56677788888888888888886654
No 19
>PF03623 Focal_AT: Focal adhesion targeting region; InterPro: IPR005189 Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signalling complexes that are formed following engagement of the extracellular matrix by integrins. The C-terminal "focal adhesion targeting" (FAT) region is necessary and sufficient for localizing FAK to focal adhesions. The crystal structure of FAT shows it forms a four-helix bundle that resembles those found in two other proteins involved in cell adhesion, alpha-catenin and vinculin []. The binding of FAT to the focal adhesion protein, paxillin, requires the integrity of the helical bundle, whereas binding to another focal adhesion protein, talin, does not.; GO: 0004713 protein tyrosine kinase activity, 0004871 signal transducer activity, 0006468 protein phosphorylation, 0007172 signal complex assembly, 0005925 focal adhesion; PDB: 1K05_C 1OW8_C 1OW7_C 3S9O_C 3B71_B 1K04_A 1OW6_C 3GM1_B 3GM3_A 3GM2_A ....
Probab=44.38 E-value=2.5e+02 Score=25.64 Aligned_cols=95 Identities=24% Similarity=0.367 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHhHHHHHhHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH
Q psy9625 85 TEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNAT 164 (394)
Q Consensus 85 teGLISAakaVa~a~~~Lve~Ad~lv~g~d~~~~E~li~AAk~VaAATaqLvaasrvKa~~~s~~~~~L~~Aa~aVt~A~ 164 (394)
.+++++..|.|+..+..|+...|.+++-- ..+.-++|. -|=+-+.+=.
T Consensus 34 ~~~y~~~VK~VG~~Lr~Ll~sVd~~~~~l-~~s~~~EVe-------------------------------ma~klL~~DM 81 (139)
T PF03623_consen 34 PEEYVDLVKNVGLALRDLLTSVDQILPSL-PSSVRREVE-------------------------------MAHKLLSKDM 81 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGS-HTTSHHHHH-------------------------------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccC-CHHHHHHHH-------------------------------HHHHHHHHHH
Confidence 47789999999999999999999885441 111122222 1223333334
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCCccchhccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy9625 165 GSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQV 226 (394)
Q Consensus 165 ~~LV~aA~~aq~~~EiV~qg~gs~~~t~~fy~k~~~WteGLISAAk~Va~at~~LveaA~~~ 226 (394)
.+||.+-+.+|. .+.+.. ++.+-.++.++|-.+|.-+..|+++-|..
T Consensus 82 ~eLi~~mklaq~---------~~~ttl------~~eyrr~ml~aah~LA~daKnLlD~VD~a 128 (139)
T PF03623_consen 82 AELISAMKLAQQ---------NSNTTL------DEEYRRQMLSAAHVLAMDAKNLLDVVDQA 128 (139)
T ss_dssp HHHHHHHHHHHH---------TTTSTT------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------hcCchH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455555554541 111111 23455689999999999999999987765
No 20
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=25.18 E-value=4.1e+02 Score=28.56 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9625 268 AALSQASRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRH 343 (394)
Q Consensus 268 ~~L~~Ask~V~~At~~LV~avk~~~~~~~~~~~~~d~s~ls~~~~k~~emE~Qv~ILklE~eLe~aR~kL~~iRk~ 343 (394)
+.+.-|-+.|..|-..|.++-.......+. ...+|+.. -.+..... |-+||.+|-.++.+|..|+..
T Consensus 242 D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~-~gvlDP~~--~a~~~~~l------I~~Le~qLa~~~aeL~~L~~~ 308 (434)
T PRK15178 242 ERILWLENDVKSAQENLGAARLELLKIQHI-QKDIDPKE--TITAIYQL------IAGFETQLAEAKAEYAQLMVN 308 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcChHH--HHHHHHHH------HHHHHHHHHHHHHHHHHHHhh
Confidence 556667777777777777777666666554 45677664 22233332 678888888888888888664
No 21
>KOG3119|consensus
Probab=22.92 E-value=2e+02 Score=28.60 Aligned_cols=44 Identities=25% Similarity=0.245 Sum_probs=37.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy9625 306 SLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHHLLKKK 349 (394)
Q Consensus 306 ~ls~~~~k~~emE~Qv~ILklE~eLe~aR~kL~~iRk~~Y~~~~ 349 (394)
+.+-...|..+-|-+.+|..||+|.+..|.+..+|++..|....
T Consensus 207 ~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 207 RKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677888889999999999999999999999999988754
No 22
>PRK11637 AmiB activator; Provisional
Probab=21.95 E-value=9.1e+02 Score=25.10 Aligned_cols=36 Identities=14% Similarity=0.053 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy9625 319 AQVRVLELEAGLEKERLKLSALRRHHLLKKKIVYLA 354 (394)
Q Consensus 319 ~Qv~ILklE~eLe~aR~kL~~iRk~~Y~~~~~~~~~ 354 (394)
.+.+|-++|.+|+..+..|..+-+.-|..++..|+.
T Consensus 108 l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~ 143 (428)
T PRK11637 108 LNASIAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQ 143 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 345678888999999999999999999987544443
No 23
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.61 E-value=1.3e+02 Score=29.70 Aligned_cols=29 Identities=28% Similarity=0.246 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9625 315 LEMEAQVRVLELEAGLEKERLKLSALRRH 343 (394)
Q Consensus 315 ~emE~Qv~ILklE~eLe~aR~kL~~iRk~ 343 (394)
.=..+....|..|+||..+|.+|++-|+.
T Consensus 17 ~w~~AR~~lL~kEkeLtR~rd~vaaeRR~ 45 (247)
T COG4312 17 EWLAAREALLAKEKELTRARDAVAAERRA 45 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566778999999999999999999986
No 24
>PF08824 Serine_rich: Serine rich protein interaction domain; InterPro: IPR014928 This is a serine rich protein that is found in the docking protein p130(cas) (Crk-associated substrate). The protein folds into a four helix bundle which is associated with protein-protein interactions []. ; PDB: 2L81_A 1Z23_A.
Probab=21.31 E-value=6.7e+02 Score=23.32 Aligned_cols=116 Identities=14% Similarity=0.117 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCc------hhhhhHHHHHHhhhhHHHHHHHHHHccCCCCcchhhhhhchhhHHHHHHHHHH
Q psy9625 21 LDSCTTLMKAIRILVQKSPDD------LDIASLSLHQARRLEMEAQAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKA 94 (394)
Q Consensus 21 L~aa~~i~~a~~~Lv~~a~~~------~~~~~~~~~~~~~~~~eaQ~eLV~~gr~s~~~~~~Fy~~~~swteGLISAaka 94 (394)
..-=..+-.+++.|+.+.+.+ ++-.-..++.|..++..+=+++++-+||...+ ..+-.++.-...|...-..
T Consensus 11 ~~LQ~~v~~sVs~L~~fvs~~WR~~~~le~~i~~Ir~a~~~v~~sl~~fl~FArga~~N--A~~~~D~~L~~kL~~qLq~ 88 (159)
T PF08824_consen 11 SRLQQEVESSVSNLMSFVSSNWRSPESLERHINEIRAAVDRVRASLREFLDFARGALAN--ASNLSDRNLQAKLRRQLQP 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSTT-CCCHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHCC--HTTTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HccccchhHHHHHHHHHHH
Confidence 333345667777777654432 22223467888889999999999999888664 3355555555666555566
Q ss_pred HHHHHHHHHHHHHHhhcCC-------------CchhHhHHHHHhHHHHHHHHHHHHH
Q psy9625 95 VAMSAKYLLTAADQVVSGG-------------EGAKLERLIVASHGVAASTAQLVVA 138 (394)
Q Consensus 95 Va~a~~~Lve~Ad~lv~g~-------------d~~~~E~li~AAk~VaAATaqLvaa 138 (394)
+..+-+.|.++...+=..+ ..+.+|+++..|++|-.-..||+..
T Consensus 89 l~ds~qiL~~~~q~Ld~~~Wsl~~La~~k~~~~~DdLDrfVmvaR~vpdD~kqlas~ 145 (159)
T PF08824_consen 89 LEDSYQILLQTSQALDSCNWSLDVLARDKPQNKPDDLDRFVMVARTVPDDAKQLASF 145 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHTT--SS-TCHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHhcCCCCCCcchHHHHHHHHHhchHHHHHHHHH
Confidence 6677777777666552221 1466777777777777777776643
No 25
>PF10197 Cir_N: N-terminal domain of CBF1 interacting co-repressor CIR; InterPro: IPR019339 This entry represents a 45 residue conserved region at the N-terminal end of a family of proteins referred to as CIRs (CBF1-interacting co-repressors). CBF1 (centromere-binding factor 1) acts as a transcription factor that causes repression by binding specifically to GTGGGAA motifs in responsive promoters, and it requires CIR as a co-repressor. CIR binds to histone deacetylase and to SAP30 and serves as a linker between CBF1 and the histone deacetylase complex []. It may also modulate splice site selection during alternative splicing of pre-mRNAs.
Probab=21.28 E-value=2e+02 Score=20.41 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9625 317 MEAQVRVLELEAGLEKERLKLSALRRH 343 (394)
Q Consensus 317 mE~Qv~ILklE~eLe~aR~kL~~iRk~ 343 (394)
|.-|.+|.+-|+....+++++.++++.
T Consensus 7 ~~Nq~kVw~aEq~~~~E~kk~~e~~ke 33 (37)
T PF10197_consen 7 KKNQEKVWKAEQKAEEEEKKIEERRKE 33 (37)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999998874
Done!