RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9625
(394 letters)
>gnl|CDD|201885 pfam01608, I_LWEQ, I/LWEQ domain. I/LWEQ domains bind to actin. It
has been shown that the I/LWEQ domains from mouse talin
and yeast Sla2p interact with F-actin. I/LWEQ domains
can be placed into four major groups based on sequence
similarity: (1) Metazoan talin; (2) Dictyostelium
TalA/TalB and SLA110; (3) metazoan Hip1p; and (4) yeast
Sla2p. The domain has four conserved blocks, the name of
the domain is derived from the initial conserved amino
acid of each of the four blocks.
Length = 194
Score = 197 bits (504), Expect = 4e-62
Identities = 91/193 (47%), Positives = 124/193 (64%), Gaps = 6/193 (3%)
Query: 152 ALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKA 211
A+ +A++ +T+A ++V A EI+ GSAS T EFYK+N +WTEGLISAAKA
Sbjct: 4 AILEAAKAITDAVAALVKAATAAQR--EIVAQGKGSASRT-EFYKKNSRWTEGLISAAKA 60
Query: 212 VAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALS 271
VA + L+ AAD VV G E LIVAS+ VAASTAQLV ASRVKA+ NS L
Sbjct: 61 VAGATNILVEAADGVVQGT--GSEEELIVASNEVAASTAQLVAASRVKADFNSKAQDRLE 118
Query: 272 QASRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEAQVRVLELEAGLE 331
AS+ VTNA ++VA K + +E +D+D++ L+LH+ + EME QV +L+LE LE
Sbjct: 119 AASKAVTNACKALVAAVKQGL-EKEEDQEDVDLSKLTLHEGKTQEMEQQVEILKLENELE 177
Query: 332 KERLKLSALRRHH 344
+ R +L +R+ H
Sbjct: 178 EARKRLGEIRKAH 190
Score = 161 bits (409), Expect = 6e-48
Identities = 75/160 (46%), Positives = 92/160 (57%), Gaps = 21/160 (13%)
Query: 16 VNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASNTR 75
VNE IL++ + A+ LV+ + AQ EI+ GSAS T
Sbjct: 1 VNEAILEAAKAITDAVAALVKAA------------------TAAQREIVAQGKGSASRT- 41
Query: 76 EFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQL 135
EFYK+N +WTEGLISAAKAVA + L+ AAD VV G E LIVAS+ VAASTAQL
Sbjct: 42 EFYKKNSRWTEGLISAAKAVAGATNILVEAADGVVQGT--GSEEELIVASNEVAASTAQL 99
Query: 136 VVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCI 175
V ASRVKA+ NS L AS+ VTNA ++VA K +
Sbjct: 100 VAASRVKADFNSKAQDRLEAASKAVTNACKALVAAVKQGL 139
Score = 34.5 bits (80), Expect = 0.045
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 22 DSCTTLMKAIR--ILVQKSPDDLDIASLSLHQARRLEMEAQAEIIM 65
++C L+ A++ + ++ +D+D++ L+LH+ + EME Q EI+
Sbjct: 126 NACKALVAAVKQGLEKEEDQEDVDLSKLTLHEGKTQEMEQQVEILK 171
>gnl|CDD|214607 smart00307, ILWEQ, I/LWEQ domain. Thought to possess an F-actin
binding function.
Length = 200
Score = 167 bits (426), Expect = 2e-50
Identities = 88/190 (46%), Positives = 120/190 (63%), Gaps = 5/190 (2%)
Query: 155 QASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAM 214
+A++ +T A ++V A EI+ G AS EFYK+N +WTEGLISAAKAVA
Sbjct: 12 EAAKAITKAIAALVKAATNAQR--EIVAQGRGGASPG-EFYKKNSRWTEGLISAAKAVAA 68
Query: 215 SAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQAS 274
+ L+ AAD VV+G E LIVA+ VAASTAQLV ASRVKA+++S L AS
Sbjct: 69 ATNVLVEAADGVVTGK--GSEEELIVAAKEVAASTAQLVAASRVKADKDSQAQDRLQAAS 126
Query: 275 RDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEAQVRVLELEAGLEKER 334
+ VTNAT ++VA K+ + +E ++ D + LSLH+ + EME QV +L+LE LE R
Sbjct: 127 KAVTNATANLVAAVKSGMIFDEEQEEEEDFSKLSLHEGKTQEMEQQVEILKLENELEAAR 186
Query: 335 LKLSALRRHH 344
KL+ +R+ H
Sbjct: 187 KKLAEIRKQH 196
Score = 141 bits (357), Expect = 3e-40
Identities = 77/162 (47%), Positives = 98/162 (60%), Gaps = 21/162 (12%)
Query: 11 GVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGS 70
GV+LEV+E IL++ + KAI LV+ + + AQ EI+ G
Sbjct: 1 GVELEVDESILEAAKAITKAIAALVKAATN------------------AQREIVAQGRGG 42
Query: 71 ASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAA 130
AS EFYK+N +WTEGLISAAKAVA + L+ AAD VV+G E LIVA+ VAA
Sbjct: 43 ASPG-EFYKKNSRWTEGLISAAKAVAAATNVLVEAADGVVTGK--GSEEELIVAAKEVAA 99
Query: 131 STAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAK 172
STAQLV ASRVKA+++S L AS+ VTNAT ++VA K
Sbjct: 100 STAQLVAASRVKADKDSQAQDRLQAASKAVTNATANLVAAVK 141
Score = 28.1 bits (63), Expect = 7.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 29 KAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEII 64
K+ I ++ ++ D + LSLH+ + EME Q EI+
Sbjct: 141 KSGMIFDEEQEEEEDFSKLSLHEGKTQEMEQQVEIL 176
>gnl|CDD|218380 pfam05010, TACC, Transforming acidic coiled-coil-containing protein
(TACC). This family contains the proteins TACC 1, 2 and
3 the genes for which are found concentrated in the
centrosomes of eukaryotic and may play a conserved role
in organising centrosomal microtubules. The human TACC
proteins have been linked to cancer and TACC2 has been
identified as a possible tumour suppressor (AZU-1). The
functional homologue (Alp7) in Schizosaccharomyces pombe
has been shown to be required for organisation of
bipolar spindles.
Length = 207
Score = 28.5 bits (64), Expect = 4.8
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 302 LDIASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHHLLKKK 349
L+IA+ + Q R +A+ L+A L KE++K+ +L K K
Sbjct: 145 LEIANEEIAQVRS---KAKAETAALQASLRKEQMKVQSLEETLEQKNK 189
>gnl|CDD|173775 cd01025, TOPRIM_recR, TOPRIM_recR: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type
found in Escherichia coli RecR. RecR participates in
the RecFOR pathway of homologous recombinational repair
in prokaryotes. This pathway provides a single-stranded
DNA molecule coated with RecA to allow invasion of a
homologous molecule. The RecFOR system directs the
loading of RecA onto gapped DNA coated with SSB
protein. The TOPRIM domain has two conserved motifs,
one of which centers at a conserved glutamate and the
other one at two conserved aspartates (DxD). In RecR
sequences this glutamate in the first turn of the
TOPRIM domain is semiconserved, the DXD motif is not
conserved.
Length = 112
Score = 27.1 bits (61), Expect = 7.1
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 27 LMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMA 66
L I L PDDL+I L R+ E+I+A
Sbjct: 28 LGGLISPLDGIGPDDLNIDKL----LERIAKGQVKEVILA 63
>gnl|CDD|130270 TIGR01203, HGPRTase, hypoxanthine phosphoribosyltransferase.
Alternate name: hypoxanthine-guanine
phosphoribosyltransferase. Sequence differences as small
as a single residue can affect whether members of this
family act on hypoxanthine and guanine or hypoxanthine
only. The designation of this model as equivalog
reflects hypoxanthine specificity and does not reflect
whether or not guanine can replace hypoxanthine
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 166
Score = 27.6 bits (62), Expect = 7.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 18 EKILDSCTTLMKAIRILVQKSPDDLDIASL 47
E I+D+ TL + +L + P L I +L
Sbjct: 91 EDIVDTGLTLQYLLDLLKARKPKSLKIVTL 120
>gnl|CDD|238816 cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS)
3'-phosphatase, is a bacterial member of the inositol
monophosphatase family. It has been proposed that CysQ
helps control intracellular levels of PAPS, which is an
intermediate in cysteine biosynthesis (a principal route
of sulfur assimilation).
Length = 242
Score = 27.6 bits (62), Expect = 9.7
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 15/113 (13%)
Query: 74 TREFYKRNHQWTE--GLISAAKAVAMSAKYLLTAADQVVSGGEGAKLER---LIVASHGV 128
TREF K N ++ L+ + V + Y A ++ G + S
Sbjct: 85 TREFIKGNGEFAVNIALVEDGRPV-LGVVY-APALGELYYALRGGGAYKNGRPGAVSLQA 142
Query: 129 AASTAQ--LVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAE 179
Q VVASR + + A L+ + GS + K C +AE
Sbjct: 143 RPPPLQPLRVVASR--SHPDEELEALLAALGVAEVVSIGS---SLKFC-LVAE 189
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.126 0.340
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,141,429
Number of extensions: 1851875
Number of successful extensions: 1943
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1918
Number of HSP's successfully gapped: 27
Length of query: 394
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 295
Effective length of database: 6,546,556
Effective search space: 1931234020
Effective search space used: 1931234020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)