RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9625
(394 letters)
>1r0d_A HIP1-related, huntingtin interacting protein 12, HIP 12;
endocytosis, actin-binding, structural genomics, PSI,
protein structure initiative; 1.90A {Homo sapiens} SCOP:
a.216.1.1
Length = 206
Score = 135 bits (340), Expect = 5e-38
Identities = 85/179 (47%), Positives = 109/179 (60%), Gaps = 21/179 (11%)
Query: 1 MLTQSRRADTGVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQ 60
M+ Q+R A +GVKLEVNE+IL+SCT LMKAIR+LV S Q
Sbjct: 39 MMNQARHASSGVKLEVNERILNSCTDLMKAIRLLVTTS------------------TSLQ 80
Query: 61 AEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLER 120
EI+ + G+A+ EFY +N +WTEGLISA+KAV A L+ AAD+VV K E
Sbjct: 81 KEIVESGRGAATQQ-EFYAKNSRWTEGLISASKAVGWGATQLVEAADKVVLHT--GKYEE 137
Query: 121 LIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAE 179
LIV SH +AASTAQLV AS+VKA ++S HL+ L + SR V +VVA+ K+ E
Sbjct: 138 LIVCSHEIAASTAQLVAASKVKANKHSPHLSRLQECSRTVNERAANVVASTKSGQEQIE 196
Score = 119 bits (300), Expect = 3e-32
Identities = 64/156 (41%), Positives = 93/156 (59%), Gaps = 6/156 (3%)
Query: 152 ALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKA 211
+ + D+ A +V T+ + EI+ + G+A+ EFY +N +WTEGLISA+KA
Sbjct: 57 RILNSCTDLMKAIRLLVTTSTSLQK--EIVESGRGAATQQ-EFYAKNSRWTEGLISASKA 113
Query: 212 VAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALS 271
V A L+ AAD+VV K E LIV SH +AASTAQLV AS+VKA ++S HL+ L
Sbjct: 114 VGWGATQLVEAADKVVLHT--GKYEELIVCSHEIAASTAQLVAASKVKANKHSPHLSRLQ 171
Query: 272 QASRDVTNATGSVVATAKTCIHLVDESADDLDIASL 307
+ SR V +VVA+ K+ +++ D +D + L
Sbjct: 172 ECSRTVNERAANVVASTKSGQEQIEDR-DTMDFSGL 206
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain,
cytoskeleton, phosphorylation, structural protein,
actin- binding protein; NMR {Mus musculus}
Length = 189
Score = 130 bits (329), Expect = 1e-36
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 22/179 (12%)
Query: 1 MLTQSRRADTGVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQ 60
+ +++ + L E+IL++ ++ A LV+ + AQ
Sbjct: 33 LKPRAKPKEADESLNFEEQILEAAKSIAAATSALVKAA------------------SAAQ 74
Query: 61 AEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLER 120
E++ G + QW++GLISAA+ VA + L AA+ V G A E+
Sbjct: 75 RELVAQ--GKVGAIPANALDDGQWSQGLISAARMVAAATNNLCEAANAAVQGH--ASQEK 130
Query: 121 LIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAE 179
LI ++ VAASTAQL+VA +VKA+++S + L A V A+ ++V A+ +
Sbjct: 131 LISSAKQVAASTAQLLVACKVKADQDSEAMKRLQAAGNAVKRASDNLVKAAQKAAAFED 189
Score = 111 bits (278), Expect = 3e-29
Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 152 ALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKA 211
+ +A++ + AT ++V A E++ G + QW++GLISAA+
Sbjct: 51 QILEAAKSIAAATSALVKAASAAQR--ELVAQ--GKVGAIPANALDDGQWSQGLISAARM 106
Query: 212 VAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALS 271
VA + L AA+ V G A E+LI ++ VAASTAQL+VA +VKA+++S + L
Sbjct: 107 VAAATNNLCEAANAAVQGH--ASQEKLISSAKQVAASTAQLLVACKVKADQDSEAMKRLQ 164
Query: 272 QASRDVTNATGSVVATAKTCIHLVD 296
A V A+ ++V A+ D
Sbjct: 165 AAGNAVKRASDNLVKAAQKAAAFED 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 3e-12
Identities = 63/403 (15%), Positives = 121/403 (30%), Gaps = 131/403 (32%)
Query: 46 SLSLHQARRLEMEAQAEIIMAHHGSASNTRE-FYKRNHQWTEGLISAAKAVA---MSAKY 101
L+L +E + A AS +E F K + TEG + + + K+
Sbjct: 8 PLTLSHG---SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 102 LLTAADQVVSGGEGAKLE--RLIVAS-----------HGVAAS----------TAQLVV- 137
L + V G + L + H +AA + ++
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 138 ---ASRVKAER--NSVHLAALSQASRDVTNAT--------GS------------------ 166
+R+ A+R + +AL +A + NA G+
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGE-GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 167 ----VVATAKTCIHLAEIIMAHHGSASNTREFYKRN---HQWTEGLISAAKAVAMSAKYL 219
+ +A+T L + + + + + +W E + YL
Sbjct: 184 VGDLIKFSAETLSELIR-------TTLDAEKVFTQGLNILEWLENPSNTP-----DKDYL 231
Query: 220 LTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVK----AERNSVHLAALSQASR 275
L+ +S LI GV A VV +++ E S +L + S+
Sbjct: 232 LSIP---ISCP-------LI----GVI-QLAHYVVTAKLLGFTPGELRS-YLKGATGHSQ 275
Query: 276 DVTNATGSVVATAKTCIHLVDESADDLDIASLSL--------HQA-RRLEMEAQVRVLEL 326
+ A +A + ES ++++ ++A + + L
Sbjct: 276 GLVTAV--AIAETDS-----WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 327 EA------------GLEKERL-KLSALRRHHLLKKKIVYLALF 356
E L +E++ HL K V ++L
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Score = 45.4 bits (107), Expect = 3e-05
Identities = 55/323 (17%), Positives = 101/323 (31%), Gaps = 104/323 (32%)
Query: 70 SASNTREFYKRN---HQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASH 126
+ + + + + +W E + YLL+ +S LI
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTP-----DKDYLLSIP---ISCP-------LI---- 241
Query: 127 GVAASTAQLVVASRVK----AERNSVHLAALSQASRDVTNATGSVVATAKT------CIH 176
GV A VV +++ E S +L + S+ + A +A + +
Sbjct: 242 GVI-QLAHYVVTAKLLGFTPGELRS-YLKGATGHSQGLVTAV--AIAETDSWESFFVSVR 297
Query: 177 LAEIIMAHHGSASNTREF---------YKRNHQWTEGLIS-------------------- 207
A ++ G + + + + EG+ S
Sbjct: 298 KAITVLFFIGVRC-YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 208 -----AAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTA--QLVVASRVK- 259
A K V +S L+ A +V G L L + A + Q SR+
Sbjct: 357 NSHLPAGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ----SRIPF 409
Query: 260 AER---------------NSVHLA-ALSQASRDVTNATGSVVATAKTC-IHLVD-ESADD 301
+ER +S L A ++D+ +V AK I + D D
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDL--VKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 302 LDIASLSLHQARRL-EMEAQVRV 323
L + S S+ + R+ + ++ V
Sbjct: 468 LRVLSGSI--SERIVDCIIRLPV 488
Score = 42.3 bits (99), Expect = 3e-04
Identities = 42/264 (15%), Positives = 70/264 (26%), Gaps = 113/264 (42%)
Query: 11 GVKLEVN------EKILDSCTTLMKAIRILVQKS-------PDD-LD--------IASLS 48
G ++ N E I+D K + + + S L + +
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 49 LHQARRLEMEA--QAEIIMAHH--GSASNTREFYKRNHQWTEGLISA--AKAVAMS---A 99
L+ + A+ A H G E+ +A + A MS
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLG------EY------------AALASLADVMSIESL 1782
Query: 100 KYLL----TAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQ 155
++ V E + +++G+ A + RV A S AL
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGR------SNYGMIA-----INPGRVAA---SFSQEALQY 1828
Query: 156 ASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMS 215
V TG +V EI+ N Y N E
Sbjct: 1829 VVERVGKRTGWLV----------EIV--------N----Y--N---VEN----------- 1850
Query: 216 AKYLLTAADQVVSGGEGAKLERLI 239
Q V+ G+ L+ +
Sbjct: 1851 --------QQYVAAGDLRALDTVT 1866
Score = 36.2 bits (83), Expect = 0.020
Identities = 37/194 (19%), Positives = 55/194 (28%), Gaps = 66/194 (34%)
Query: 91 AAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTA--QLVVASRVK-AER-- 145
A K V +S L+ A +V G L L + A + Q SR+ +ER
Sbjct: 362 AGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ----SRIPFSERKL 414
Query: 146 -------------NSVHLA-ALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNT 191
+S L A ++D+ +V AK + I + S+
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDL--VKNNVSFNAK---DIQ-IPVYDTFDGSDL 468
Query: 192 RE-------------FYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSG--------- 229
R W A ++L SG
Sbjct: 469 RVLSGSISERIVDCIIRLPVK-WE-------TTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 230 -GEGAKLERLIVAS 242
G G R+IVA
Sbjct: 521 DGTGV---RVIVAG 531
Score = 36.2 bits (83), Expect = 0.022
Identities = 57/320 (17%), Positives = 99/320 (30%), Gaps = 104/320 (32%)
Query: 75 REFYKRNHQWTEGLISAAKAV---A---MSAKYLLTAADQVVS---------GGEGAKLE 119
+ YK + AA+ V A Y + D V++ GGE K
Sbjct: 1633 MDLYKTS--------KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 120 RLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVT--NATGSVVATAKT--CI 175
R +A + +V ++K E+ +++ S T + G + AT T +
Sbjct: 1685 R-----ENYSAMIFETIVDGKLKTEKI---FKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 176 HLAEI----IMAHHGSASNTREF-------YKRNHQWTEGLISA--AKAVAMS---AKYL 219
L E + G F Y +A + A MS +
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEY-----------AALASLADVMSIESLVEV 1785
Query: 220 L----TAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASR 275
+ V E + +++G+ A + RV A S AL
Sbjct: 1786 VFYRGMTMQVAVPRDELGR------SNYGMIA-----INPGRVAA---SFSQEALQYVVE 1831
Query: 276 DVTNATGSVVATA------KTCI---HLVDESADDLDIASLSLHQARRLEMEAQVRVLEL 326
V TG +V + + L LD + L+ + ++ ++EL
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLR-----ALDTVTNVLNFIK----LQKIDIIEL 1882
Query: 327 EAGLEKERLKLSALRRHHLL 346
+ L E ++ HL
Sbjct: 1883 QKSLSLEEVE------GHLF 1896
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1
a.216.1.1
Length = 308
Score = 48.0 bits (113), Expect = 2e-06
Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 11/161 (6%)
Query: 15 EVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASNT 74
+L + L A+ L++ ++ R + A + G
Sbjct: 122 GNGRPLLQAAKGLAGAVSELLR--------SAQPASAEPRQNLLQAAGNVGQASGELLQQ 173
Query: 75 REFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSG-GEGAKLERLIVASHGVAASTA 133
+ + + L+ A AVA +A L+ A V + ++I A+ A ST+
Sbjct: 174 IGESDTDPHFQDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTS 233
Query: 134 QLVVASRVKAERNSVHLAA--LSQASRDVTNATGSVVATAK 172
QLV ++V A S + L +A R V A V+ ++
Sbjct: 234 QLVACTKVVAPTISSPVCQEQLVEAGRLVAKAVEGCVSASQ 274
Score = 46.1 bits (108), Expect = 1e-05
Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 12/172 (6%)
Query: 152 ALSQASRDVTNATGSVVATAK--------TCIHLAEIIMAHHGSASNTREFYKRNHQWTE 203
L QA++ + A ++ +A+ + A + G + + +
Sbjct: 126 PLLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQIGESDTDPHFQD 185
Query: 204 GLISAAKAVAMSAKYLLTAADQVVSG-GEGAKLERLIVASHGVAASTAQLVVASRVKAER 262
L+ A AVA +A L+ A V + ++I A+ A ST+QLV ++V A
Sbjct: 186 VLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVACTKVVAPT 245
Query: 263 NSVHLAA--LSQASRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQA 312
S + L +A R V A V+ ++ + + A+ ++ QA
Sbjct: 246 ISSPVCQEQLVEAGRLVAKAVEGCVSASQA-ATEDGQLLRGVGAAATAVTQA 296
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.004
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 20/46 (43%)
Query: 331 EKERL-KL-SALRRHHLLKKKIVYLALFQEIRD-APKLRAI-LTVE 372
EK+ L KL ++L+ +Y D AP L AI T+E
Sbjct: 18 EKQALKKLQASLK---------LYAD------DSAPAL-AIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.018
Identities = 61/395 (15%), Positives = 112/395 (28%), Gaps = 102/395 (25%)
Query: 9 DTGVKLEVNEKI----LDSCTT---LMKAI-RILVQKSPDDLDIASLSLHQARRLEMEAQ 60
V+ +++ KI L +C + +++ + ++L Q P+ + S + R+ Q
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQ 231
Query: 61 AEI--IMAHHGSASNTREFYKR-----NHQWTEGLISAAKAVAMSAKYLLTAADQVVSGG 113
AE+ ++ Y+ + A +S K LLT + V+
Sbjct: 232 AELRRLLKSKP--------YENCLLVLLNVQNAKAW---NAFNLSCKILLTTRFKQVTDF 280
Query: 114 EGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKT 173
A I H T E S+ L L +D+ T
Sbjct: 281 LSAATTTHISLDHHSMTLT---------PDEVKSLLLKYLDCRPQDLPRE-------VLT 324
Query: 174 CIHLA-EIIMAHHGSASNTREFYKRNHQWTEGLISA-AKAVAMSAKYLLTAADQVVSGGE 231
II A + R+ W + S L A +
Sbjct: 325 TNPRRLSII------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR------ 372
Query: 232 GAKLERLIVASHGVAASTAQLVV----ASRVKAERNSVHLAALSQASRDVTNATGSVVAT 287
+RL V T L + + L S + +T S
Sbjct: 373 -KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS---- 427
Query: 288 AKTCIHLVDESADDLDIASLSLHQARRLEMEAQVRVLE---LEAGLEKERLKLSALRR-- 342
I + + L + + +++ + + + L L +
Sbjct: 428 ----IP-------SIYL-ELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 343 -----HHLLKK---------KIVYLAL-F--QEIR 360
HHL ++V+L F Q+IR
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
>1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg
IONS, pyrophosphate, transition state analogue; HET:
IMU; 1.75A {Giardia intestinalis} SCOP: c.61.1.1 PDB:
1dqp_A*
Length = 230
Score = 29.9 bits (68), Expect = 1.3
Identities = 3/45 (6%), Positives = 13/45 (28%)
Query: 18 EKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAE 62
++ +DS T+ + + + + + +
Sbjct: 125 DEYVDSGHTIFSIQEQIKHAKICSCFVKDVDAIKKHSALADTKMF 169
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu
protein; NMR {Mus musculus}
Length = 158
Score = 29.2 bits (65), Expect = 1.3
Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 28/173 (16%)
Query: 90 SAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVH 149
+A +AV ++K LL+ +G RL A+ G+ + +LV ASR +
Sbjct: 12 NALRAVGDASKRLLSDLLPPSTGTFQEAQSRLNEAAAGLNQAATELVQASRGTPQ----- 66
Query: 150 LAALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAA 209
L++AS + + MA + R ++S
Sbjct: 67 --DLARASGRFGQDFSTFLEAGVE--------MAGQAPSQEDR----------AQVVSNL 106
Query: 210 KAVAMSAKYLLTAADQVVS--GGEGAKLERLIVASHGVAASTAQLVVASRVKA 260
K ++MS+ LL AA + + K + L A+ V S QL+ +A
Sbjct: 107 KGISMSSSKLLLAAKALSTDPASPNLKSQ-LAAAARAVTDSINQLITMCTQQA 158
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL
adhesion-protein binding complex; HET: EPE; 2.54A {Homo
sapiens}
Length = 283
Score = 29.6 bits (65), Expect = 1.8
Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 11/110 (10%)
Query: 76 EFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSG-GEGAKLERLIVASHGVAASTAQ 134
+ LI AK +A ++ + A +V + L+ + + Q
Sbjct: 152 RLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQ 211
Query: 135 LVVASRVKA----------ERNSVHLAALSQASRDVTNATGSVVATAKTC 174
L + S VKA E + L ++++ + V A+
Sbjct: 212 LKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAA 261
Score = 29.6 bits (65), Expect = 1.8
Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 11/110 (10%)
Query: 193 EFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSG-GEGAKLERLIVASHGVAASTAQ 251
+ LI AK +A ++ + A +V + L+ + + Q
Sbjct: 152 RLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQ 211
Query: 252 LVVASRVKA----------ERNSVHLAALSQASRDVTNATGSVVATAKTC 291
L + S VKA E + L ++++ + V A+
Sbjct: 212 LKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAA 261
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase;
2.60A {Homo sapiens} PDB: 3gm1_A 3gm2_A
Length = 153
Score = 26.7 bits (58), Expect = 9.2
Identities = 14/97 (14%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 202 TEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAE 261
EG + K V ++ + L+ + D ++ + + + A+L+ ++++
Sbjct: 47 PEGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELI--NKMRLA 104
Query: 262 RNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDES 298
+ + + + R + A+ ++ AK + VD++
Sbjct: 105 QQNAVTSLSEECKRQMLTASHTLAVDAKNLLDAVDQA 141
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical
bundle forming A helix-exchange transferase; 1.95A {Homo
sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A
1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Length = 162
Score = 26.7 bits (58), Expect = 9.5
Identities = 14/97 (14%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 202 TEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAE 261
E + K V ++ + LL D+ + + + +A + + +L+ +++K
Sbjct: 57 PEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELI--NKMKLA 114
Query: 262 RNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDES 298
+ V + + + + A ++ AK + ++D++
Sbjct: 115 QQYVMTSLQQEYKKQMLTAAHALAVDAKNLLDVIDQA 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.126 0.340
Gapped
Lambda K H
0.267 0.0412 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,775,280
Number of extensions: 358017
Number of successful extensions: 820
Number of sequences better than 10.0: 1
Number of HSP's gapped: 795
Number of HSP's successfully gapped: 44
Length of query: 394
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 298
Effective length of database: 4,021,377
Effective search space: 1198370346
Effective search space used: 1198370346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)