RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9625
(394 letters)
>d1r0da_ a.216.1.1 (A:) Huntingtin interacting protein 12 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 123 bits (309), Expect = 5e-34
Identities = 85/179 (47%), Positives = 109/179 (60%), Gaps = 21/179 (11%)
Query: 1 MLTQSRRADTGVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQ 60
M+ Q+R A +GVKLEVNE+IL+SCT LMKAIR+LV S Q
Sbjct: 32 MMNQARHASSGVKLEVNERILNSCTDLMKAIRLLVTTS------------------TSLQ 73
Query: 61 AEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLER 120
EI+ + G+A+ EFY +N +WTEGLISA+KAV A L+ AAD+VV K E
Sbjct: 74 KEIVESGRGAATQQ-EFYAKNSRWTEGLISASKAVGWGATQLVEAADKVVLHT--GKYEE 130
Query: 121 LIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAE 179
LIV SH +AASTAQLV AS+VKA ++S HL+ L + SR V +VVA+ K+ E
Sbjct: 131 LIVCSHEIAASTAQLVAASKVKANKHSPHLSRLQECSRTVNERAANVVASTKSGQEQIE 189
Score = 107 bits (270), Expect = 2e-28
Identities = 61/146 (41%), Positives = 88/146 (60%), Gaps = 5/146 (3%)
Query: 152 ALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKA 211
+ + D+ A +V T+ + EI+ + G+A+ EFY +N +WTEGLISA+KA
Sbjct: 50 RILNSCTDLMKAIRLLVTTSTSL--QKEIVESGRGAATQQ-EFYAKNSRWTEGLISASKA 106
Query: 212 VAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALS 271
V A L+ AAD+VV K E LIV SH +AASTAQLV AS+VKA ++S HL+ L
Sbjct: 107 VGWGATQLVEAADKVVLHT--GKYEELIVCSHEIAASTAQLVAASKVKANKHSPHLSRLQ 164
Query: 272 QASRDVTNATGSVVATAKTCIHLVDE 297
+ SR V +VVA+ K+ +++
Sbjct: 165 ECSRTVNERAANVVASTKSGQEQIED 190
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 125
Score = 69.5 bits (170), Expect = 3e-15
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 197 RNHQWTEGLISAAKAVAMSAKYLLTAADQVVSG-GEGAKLERLIVASHGVAASTAQLVVA 255
+ + + L+ A AVA +A L+ A V + ++I A+ A ST+QLV
Sbjct: 3 TDPHFQDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVAC 62
Query: 256 SRVKAERNSVHLAA--LSQASRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQA 312
++V A S + L +A R V A V+ ++ + + A+ ++ QA
Sbjct: 63 TKVVAPTISSPVCQEQLVEAGRLVAKAVEGCVSASQAA-TEDGQLLRGVGAAATAVTQA 120
Score = 64.1 bits (156), Expect = 3e-13
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 80 RNHQWTEGLISAAKAVAMSAKYLLTAADQVVSG-GEGAKLERLIVASHGVAASTAQLVVA 138
+ + + L+ A AVA +A L+ A V + ++I A+ A ST+QLV
Sbjct: 3 TDPHFQDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVAC 62
Query: 139 SRVKAERNSVHLAA--LSQASRDVTNATGSVVATAK 172
++V A S + L +A R V A V+ ++
Sbjct: 63 TKVVAPTISSPVCQEQLVEAGRLVAKAVEGCVSASQ 98
Score = 38.7 bits (90), Expect = 2e-04
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 20/144 (13%)
Query: 143 AERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWT 202
++ + L Q + V +A ++V AK+ E +
Sbjct: 1 SDTDPHFQDVLMQLANAVASAAAALVLKAKSVAQRTE------------------DSGLQ 42
Query: 203 EGLISAAKAVAMSAKYLLTAADQVVSG-GEGAKLERLIVASHGVAASTAQLVVASRVKAE 261
+I+AA A+S L+ V E+L+ A VA + V AS+ A
Sbjct: 43 TQVIAAATQCALSTSQLVACTKVVAPTISSPVCQEQLVEAGRLVAKAVEGCVSASQ-AAT 101
Query: 262 RNSVHLAALSQASRDVTNATGSVV 285
+ L + A+ VT A ++
Sbjct: 102 EDGQLLRGVGAAATAVTQALNELL 125
Score = 34.9 bits (80), Expect = 0.004
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 83 QWTEGLISAAKAVAMSAKYLLTAADQVVSG-GEGAKLERLIVASHGVAASTAQLVVASRV 141
+I+AA A+S L+ V E+L+ A VA + V AS+
Sbjct: 40 GLQTQVIAAATQCALSTSQLVACTKVVAPTISSPVCQEQLVEAGRLVAKAVEGCVSASQ- 98
Query: 142 KAERNSVHLAALSQASRDVTNATGSVV 168
A + L + A+ VT A ++
Sbjct: 99 AATEDGQLLRGVGAAATAVTQALNELL 125
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 138
Score = 57.2 bits (138), Expect = 1e-10
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 4/119 (3%)
Query: 150 LAALSQASRDVTNATGSVVATAK---TCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLI 206
L + A+ VT A ++ K T A + E + ++
Sbjct: 13 LRGVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTENIFSSMGDAGEMV 72
Query: 207 SAAKAVAMSAKYLLTAADQVVSG-GEGAKLERLIVASHGVAASTAQLVVASRVKAERNS 264
A+ +A + L+ A G + +L+ A+ +A +TA++V A++ A
Sbjct: 73 RQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAAKGAAAHPD 131
Score = 54.9 bits (132), Expect = 6e-10
Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 14/135 (10%)
Query: 14 LEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASN 73
++ + + T + +A+ L+Q + H A +
Sbjct: 10 GQLLRGVGAAATAVTQALNELLQ---------HVKAHATGAG----PAGRYDQATDTILT 56
Query: 74 TREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSG-GEGAKLERLIVASHGVAAST 132
E + ++ A+ +A + L+ A G + +L+ A+ +A +T
Sbjct: 57 VTENIFSSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADAT 116
Query: 133 AQLVVASRVKAERNS 147
A++V A++ A
Sbjct: 117 AKMVEAAKGAAAHPD 131
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 181
Score = 51.0 bits (122), Expect = 3e-08
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 5/116 (4%)
Query: 193 EFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSG-GEGAKLERLIVASHGVAASTAQ 251
+ LI AK +A ++ + A +V + L+ + + Q
Sbjct: 55 RLVRGGSGNKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQ 114
Query: 252 LVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDESADDLDIASL 307
L + S VKA L + + + AT +V A+ + V E+ + + AS+
Sbjct: 115 LKILSTVKAT----MLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASI 166
Score = 50.7 bits (121), Expect = 3e-08
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 11/110 (10%)
Query: 76 EFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSG-GEGAKLERLIVASHGVAASTAQ 134
+ LI AK +A ++ + A +V + L+ + + Q
Sbjct: 55 RLVRGGSGNKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQ 114
Query: 135 LVVASRVKA---ERNSVHLAA-------LSQASRDVTNATGSVVATAKTC 174
L + S VKA R ++ L ++++ + V A+
Sbjct: 115 LKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAA 164
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 34.5 bits (79), Expect = 0.006
Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 3/118 (2%)
Query: 58 EAQAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAK 117
+ Q ++ A +E +++ E L A + L + A E +
Sbjct: 15 DYQTTMVRTAKAIAVTVQEMVTKSNTSPEELGPLANQLTSDYGRLASQAKPAAVAAENEE 74
Query: 118 L-ERLIVASHGVAASTAQLVVASRVKAERNSVHLA--ALSQASRDVTNATGSVVATAK 172
+ + + + LV + S L + +R V+ V+A +
Sbjct: 75 IGAHIKHRVQELGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLAALQ 132
Score = 33.3 bits (76), Expect = 0.015
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 203 EGLISAAKAVAMSAKYLLTAADQVVSGGEGAKL-ERLIVASHGVAASTAQLVVASRVKAE 261
E L A + L + A E ++ + + + LV +
Sbjct: 43 EELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQC 102
Query: 262 RNSVHLA--ALSQASRDVTNATGSVVATAK 289
S L + +R V+ V+A +
Sbjct: 103 SPSDVYTKKELIECARRVSEKVSHVLAALQ 132
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 334
Score = 30.9 bits (68), Expect = 0.24
Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 30 AIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASNTREFYKRNHQWTEGLI 89
I + ++ + + L+ + L + ++ + + K +H + GL+
Sbjct: 269 IIALTLEANKN------LTWRDMQHL-VVQTSKPAHLNADDWATNGVGRKVSHSYGYGLL 321
Query: 90 SAAKAVAMSAKY 101
A VA++ +
Sbjct: 322 DAGAMVALAQNW 333
Score = 29.0 bits (63), Expect = 1.1
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 149 HLAALSQASRDVTNAT--GSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLI 206
+A +A++++T VV T+K + + K +H + GL+
Sbjct: 269 IIALTLEANKNLTWRDMQHLVVQTSKP-------AHLNADDWATNGVGRKVSHSYGYGLL 321
Query: 207 SAAKAVAMSAKY 218
A VA++ +
Sbjct: 322 DAGAMVALAQNW 333
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 30.5 bits (67), Expect = 0.36
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 23 SCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASNTREFYKRNH 82
+ +L++ +P+ L+ + L + + + G ++ K +H
Sbjct: 266 AAPLAAGVYTLLLEANPN------LTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSH 319
Query: 83 QWTEGLISAAKAVAMSAKY 101
++ G I A K + MS +
Sbjct: 320 RYGFGKIDAHKLIEMSKTW 338
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 135
Score = 26.2 bits (57), Expect = 4.3
Identities = 8/75 (10%), Positives = 22/75 (29%), Gaps = 4/75 (5%)
Query: 120 RLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNA--TGSVVATAKTCIHL 177
+V A ++ +V ++K N L + + + A G +
Sbjct: 7 DFLVGWTKEVAVSSHMV--QQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVA 64
Query: 178 AEIIMAHHGSASNTR 192
++++
Sbjct: 65 SKLLEGLSTDIYTPL 79
Score = 25.4 bits (55), Expect = 7.5
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 237 RLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNA 280
+V A ++ +V ++K N L + + + A
Sbjct: 7 DFLVGWTKEVAVSSHMV--QQIKQNINQNFLTSSKETVVSLVEA 48
>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron
transfer flavoprotein alpha subunit {Methylophilus
methylotrophus [TaxId: 17]}
Length = 123
Score = 25.1 bits (55), Expect = 9.2
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 103 LTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASR 140
+T D ++S G G E + +A + S
Sbjct: 4 ITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSC 41
Score = 25.1 bits (55), Expect = 9.2
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 220 LTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASR 257
+T D ++S G G E + +A + S
Sbjct: 4 ITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSC 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.126 0.340
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,270,452
Number of extensions: 53960
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 28
Length of query: 394
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,213,086
Effective search space: 372417402
Effective search space used: 372417402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)