BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9626
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FS5|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ygr203w, A
Homolog Of Single-Domain Rhodanese And Cdc25
Phosphatase Catalytic Domain
Length = 152
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 39 LHKILREGHPHVIKESIKQAQVITNVGK--MWFHLKDGYGKLIYQYTRL 85
LH+ ++EGH ++E QV+ G M H+KDG+ Y Y+RL
Sbjct: 17 LHRWMQEGHTTTLREPF---QVVDVRGSDYMGGHIKDGWH---YAYSRL 59
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 35 FCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHLKDGY 75
F + + L+ G+P E IK+A +T+ HL +GY
Sbjct: 441 FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGY 481
>pdb|1PZ2|A Chain A, Crystal Structure Of A Transient Covalent Reaction
Intermediate Of A Family 51 Alpha-L-Arabinofuranosidase
pdb|1PZ2|B Chain B, Crystal Structure Of A Transient Covalent Reaction
Intermediate Of A Family 51 Alpha-L-Arabinofuranosidase
pdb|1QW8|A Chain A, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With Ara-Alpha(1,3)-Xyl
pdb|1QW8|B Chain B, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With Ara-Alpha(1,3)-Xyl
pdb|1QW9|A Chain A, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With 4-Nitrophenyl-Ara
pdb|1QW9|B Chain B, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With 4-Nitrophenyl-Ara
Length = 502
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 115 ENDINNYFQMSVEMFDYLDEILAL 138
+ND NY +S+EM D++ ++A+
Sbjct: 251 DNDTANYLALSLEMDDFIRSVVAI 274
>pdb|1PZ3|A Chain A, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
pdb|1PZ3|B Chain B, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
Length = 502
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 115 ENDINNYFQMSVEMFDYLDEILAL 138
+ND NY +S+EM D++ ++A+
Sbjct: 251 DNDTANYLALSLEMDDFIRSVVAI 274
>pdb|1OV4|A Chain A, Crystal Structure Of Human Dhea-st Complexed With
Androsterone
Length = 293
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 102 NLILSQSELDRIGENDINNYFQMSVEMFDY-LDEILALQAAVFGE 145
NLIL S + EN ++NY +SV DY +D+ L+ V G+
Sbjct: 220 NLILKNSSFQSMKENKMSNYSLLSV---DYVVDKTQLLRKGVSGD 261
>pdb|2QP4|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 102 NLILSQSELDRIGENDINNYFQMSVEMFDY-LDEILALQAAVFGE 145
NLIL S + EN ++NY +SV DY +D+ L+ V G+
Sbjct: 211 NLILKNSSFQSMKENKMSNYSLLSV---DYVVDKTQLLRKGVSGD 252
>pdb|1J99|A Chain A, Crystal Structure Of Human Dehydroepiandrosterone
Sulfotransferase In Complex With Substrate
Length = 293
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 102 NLILSQSELDRIGENDINNYFQMSVEMFDY-LDEILALQAAVFGE 145
NLIL S + EN ++NY +SV DY +D+ L+ V G+
Sbjct: 220 NLILKNSSFQSMKENKMSNYSLLSV---DYVVDKTQLLRKGVSGD 261
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 98 GFPGNLILSQSELDRIGENDINNYFQMSV---EMFDYLDEI 135
G G LIL + L+++ E D N F V E+ DYLD I
Sbjct: 4 GSSGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHI 44
>pdb|2QP3|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 102 NLILSQSELDRIGENDINNYFQMSVEMFDY-LDEILALQAAVFGE 145
NLIL S + EN ++NY +SV DY +D+ L+ V G+
Sbjct: 211 NLILKNSSFQSMKENKMSNYSLLSV---DYVVDKTQLLRKGVSGD 252
>pdb|1EFH|A Chain A, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
pdb|1EFH|B Chain B, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
Length = 292
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 102 NLILSQSELDRIGENDINNYFQMSVEMFDY-LDEILALQAAVFGE 145
NLIL S + EN ++NY +SV DY +D+ L+ V G+
Sbjct: 212 NLILKNSSFQSMKENKMSNYSLLSV---DYVVDKAQLLRKGVSGD 253
>pdb|3F3Y|A Chain A, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|B Chain B, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|C Chain C, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|D Chain D, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
Length = 285
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 102 NLILSQSELDRIGENDINNYFQMSVEMFDY-LDEILALQAAVFGE 145
NLIL S + EN ++NY +SV DY +D+ L+ V G+
Sbjct: 212 NLILKNSSFQSMKENKMSNYSLLSV---DYVVDKAQLLRKGVSGD 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,452,937
Number of Sequences: 62578
Number of extensions: 174878
Number of successful extensions: 430
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 12
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)