BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9626
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O00291|HIP1_HUMAN Huntingtin-interacting protein 1 OS=Homo sapiens GN=HIP1 PE=1 SV=5
Length = 1037
Score = 171 bits (432), Expect = 2e-42, Method: Composition-based stats.
Identities = 70/140 (50%), Positives = 102/140 (72%)
Query: 4 ILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITN 63
ILGT H+K + FW +RLPL N ++ WKFCHV HK+LR+GHP+V+K+S++ +++
Sbjct: 64 ILGTHHEKGAQTFWSVVNRLPLSSNAVLCWKFCHVFHKLLRDGHPNVLKDSLRYRNELSD 123
Query: 64 VGKMWFHLKDGYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQ 123
+ +MW HL +GYG+L Y +LL K+++H +NP FPGNL +S +LD GE+D+NN+FQ
Sbjct: 124 MSRMWGHLSEGYGQLCSIYLKLLRTKMEYHTKNPRFPGNLQMSDRQLDEAGESDVNNFFQ 183
Query: 124 MSVEMFDYLDEILALQAAVF 143
++VEMFDYL+ L L VF
Sbjct: 184 LTVEMFDYLECELNLFQTVF 203
>sp|Q8VD75|HIP1_MOUSE Huntingtin-interacting protein 1 OS=Mus musculus GN=Hip1 PE=1 SV=2
Length = 1029
Score = 169 bits (429), Expect = 4e-42, Method: Composition-based stats.
Identities = 69/140 (49%), Positives = 102/140 (72%)
Query: 4 ILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITN 63
ILGT H+K + FW +RLPL N ++ WKFCHV HK+LR+GHP+V+K+S++ +++
Sbjct: 64 ILGTHHEKGAQTFWSVVNRLPLSSNAMLCWKFCHVFHKLLRDGHPNVLKDSLRYKNELSD 123
Query: 64 VGKMWFHLKDGYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQ 123
+ +MW HL +GYG+L Y +LL ++++H +NP FPGNL +S +LD GE+D+NN+FQ
Sbjct: 124 MSRMWGHLSEGYGQLCSIYLKLLRTRMEYHTKNPRFPGNLQMSDRQLDEAGESDVNNFFQ 183
Query: 124 MSVEMFDYLDEILALQAAVF 143
++VEMFDYL+ L L VF
Sbjct: 184 LTVEMFDYLECELNLFQTVF 203
>sp|O75146|HIP1R_HUMAN Huntingtin-interacting protein 1-related protein OS=Homo sapiens
GN=HIP1R PE=1 SV=2
Length = 1068
Score = 150 bits (379), Expect = 3e-36, Method: Composition-based stats.
Identities = 66/140 (47%), Positives = 94/140 (67%)
Query: 4 ILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITN 63
ILGT H+K + FW A LPL + I++WKFCHVLHK+LR+GHP+V+ + + I
Sbjct: 55 ILGTHHEKGAFTFWSYAIGLPLPSSSILSWKFCHVLHKVLRDGHPNVLHDCQRYRSNIRE 114
Query: 64 VGKMWFHLKDGYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQ 123
+G +W HL D YG+L+ YT+LLL K+ FH ++P FP L ++ L++ D+NN FQ
Sbjct: 115 IGDLWGHLHDRYGQLVNVYTKLLLTKISFHLKHPQFPAGLEVTDEVLEKAAGTDVNNIFQ 174
Query: 124 MSVEMFDYLDEILALQAAVF 143
++VEMFDY+D L L +VF
Sbjct: 175 LTVEMFDYMDCELKLSESVF 194
>sp|Q9JKY5|HIP1R_MOUSE Huntingtin-interacting protein 1-related protein OS=Mus musculus
GN=Hip1r PE=1 SV=2
Length = 1068
Score = 139 bits (349), Expect = 7e-33, Method: Composition-based stats.
Identities = 66/140 (47%), Positives = 94/140 (67%)
Query: 4 ILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITN 63
ILGT H+K + FW A LPL + I++WKFCHVLHK+LR+GHP+V+ + + I
Sbjct: 55 ILGTHHEKGAFTFWSYAIGLPLSSSSILSWKFCHVLHKVLRDGHPNVLHDYQRYRSNIRE 114
Query: 64 VGKMWFHLKDGYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQ 123
+G +W HL+D YG L+ YT+LLL K+ FH ++P FP L ++ L++ D+NN FQ
Sbjct: 115 IGDLWGHLRDQYGHLVNIYTKLLLTKISFHLKHPQFPAGLEVTDEVLEKAAGTDVNNIFQ 174
Query: 124 MSVEMFDYLDEILALQAAVF 143
++VEMFDY+D L L +VF
Sbjct: 175 LTVEMFDYMDCELKLSESVF 194
>sp|Q02328|SLAP2_CAEEL Huntington interacting protein related 1 OS=Caenorhabditis elegans
GN=hipr-1 PE=3 SV=3
Length = 927
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 88/141 (62%), Gaps = 2/141 (1%)
Query: 4 ILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITN 63
I+GT +KSS IFW R+ L ++ ++ WKFCH++HK+LR+GH V +E+ + T
Sbjct: 39 IVGTHKEKSSGIFWHTVGRIQLEKHPVLTWKFCHLVHKLLRDGHRKVPEETYRYVNRFTQ 98
Query: 64 VGKMWFHLK-DGYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYF 122
+ + W HL GYG I Y +LL ++ FH + P PG L L+ S+L + E D++N F
Sbjct: 99 LSQFWKHLNTSGYGPCIESYCKLLHDRVTFHNKYPVVPGKLDLNDSQLKTL-EGDLDNMF 157
Query: 123 QMSVEMFDYLDEILALQAAVF 143
+M+++M D +D +L LQ V+
Sbjct: 158 EMTIDMLDQMDALLVLQDRVY 178
>sp|P33338|SLA2_YEAST Protein SLA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SLA2 PE=1 SV=5
Length = 968
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Query: 4 ILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITN 63
I+ T+ +SS + LPL + + +K VLHKI++EGHP + E+I+ I +
Sbjct: 32 IVYTWDHQSSKAVFTTLKTLPLANDEVQLFKMLIVLHKIIQEGHPSALAEAIRDRDWIRS 91
Query: 64 VGKMWFHLKDGYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQ 123
+G++ Y KLI +Y R L+ KLDFH + GF + + + +D + ++
Sbjct: 92 LGRV-HSGGSSYSKLIREYVRYLVLKLDFHAHHRGFNNGTFEYEEYVSLVSVSDPDEGYE 150
Query: 124 MSVEMFDYLDEILALQAAVFG 144
+++ D + +F
Sbjct: 151 TILDLMSLQDSLDEFSQIIFA 171
>sp|Q9P6L5|SLA2_SCHPO Endocytosis protein end4 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=end4 PE=1 SV=2
Length = 1102
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 11/148 (7%)
Query: 2 NAILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVI 61
+ I+ T+ ++ FW PL+ N + +K +H++L+EGH + +S + +
Sbjct: 39 SCIIFTWDHHTARPFWTAIKVQPLLANEVQTFKALITIHRVLQEGHKSALVDSQSEKGWL 98
Query: 62 TNVGKMW--FHLKDGYGKLIYQYTRLLLGKLDFHRRNPGFPGNL----ILSQSELDRIGE 115
+ + GY LI Y LL KL FH ++P F G +S ++D
Sbjct: 99 KTCERQYDGESSPKGYSDLIRDYVDYLLDKLSFHAQHPEFNGTFEYKEYISLRQVD---- 154
Query: 116 NDINNYFQMSVEMFDYLDEILALQAAVF 143
D N ++ +M + D I Q +F
Sbjct: 155 -DPNEGYETVYDMMNLQDHIDEFQKQLF 181
>sp|P58720|IGAA_ECO57 Putative membrane protein IgaA homolog OS=Escherichia coli O157:H7
GN=yrfF PE=3 SV=1
Length = 711
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 13 STIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHLK 72
S I W A LPL E+ +V K + + R+ HP ES A + + + K L
Sbjct: 426 SQIIWNDARSLPLPESELVN-KATALTEAVNRQLHPKPEDESRVSASLRSAIQKSGMVLL 484
Query: 73 DGYGKLIYQYTRLLLGKLDFHR 94
D +G ++ + L K D R
Sbjct: 485 DDFGDIVLKTADLCSAKDDCVR 506
>sp|P45800|IGAA_ECOLI Putative membrane protein IgaA homolog OS=Escherichia coli (strain
K12) GN=yrfF PE=1 SV=1
Length = 711
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 13 STIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHLK 72
S I W A LPL E+ +V K + + R+ HP ES A + + + K L
Sbjct: 426 SQIIWNDARSLPLPESELVN-KATALTEAVNRQLHPKPEDESRVSASLRSAIQKSGMVLL 484
Query: 73 DGYGKLIYQYTRLLLGKLDFHR 94
D +G ++ + L K D R
Sbjct: 485 DDFGDIVLKTADLCSAKDDCVR 506
>sp|P53114|MED5_YEAST Mediator of RNA polymerase II transcription subunit 5
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NUT1 PE=1 SV=1
Length = 1132
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 84 RLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMF---DYLDEILAL 138
R++ + D+ R+ G+ LIL+++ +++I N IN+++ + + DYL E++ L
Sbjct: 869 RIINSENDYSRKQLGYGKFLILNENPINKIMTNQINSFWSLHSSTYYNLDYLFELIEL 926
>sp|Q6L2W1|HUTI_PICTO Probable imidazolonepropionase OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=hutI
PE=3 SV=1
Length = 394
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 39 LHKILRE----GHPHVIKESIKQAQVITNVGKMWFHLKDGYGKLIYQYTRLL--LGKLDF 92
+HK + + G + E+IK+ G + +K GYGK I RL+ + ++
Sbjct: 93 IHKTMNDTESSGEDKIFNETIKRVDESILNGTTYLEIKSGYGKTINGERRLINAIKRIKS 152
Query: 93 HRRNPGFPGNLILSQSELDRIGENDINNYF 122
RN +L+ + D I E D YF
Sbjct: 153 IYRNVKIT---LLAHAVPDNINEYDYAGYF 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.141 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,525,987
Number of Sequences: 539616
Number of extensions: 2142442
Number of successful extensions: 4943
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4931
Number of HSP's gapped (non-prelim): 12
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)