Query         psy9626
Match_columns 145
No_of_seqs    107 out of 129
Neff          5.3 
Searched_HMMs 46136
Date          Sat Aug 17 00:33:21 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy9626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9626hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG0980|consensus              100.0 6.1E-63 1.3E-67  454.2  12.8  143    2-145    29-171 (980)
  2 PF07651 ANTH:  ANTH domain;  I 100.0 9.2E-31   2E-35  214.0   3.1  139    3-144    27-171 (280)
  3 cd03564 ANTH_AP180_CALM ANTH d  99.9 6.4E-23 1.4E-27  150.6   3.4   91    3-93     24-117 (117)
  4 smart00273 ENTH Epsin N-termin  99.7 3.6E-18 7.7E-23  126.5   4.7   98    3-100    26-127 (127)
  5 PF01417 ENTH:  ENTH domain;  I  98.0 2.2E-05 4.7E-10   58.0   6.2   85    6-90     30-119 (125)
  6 KOG0251|consensus               97.5  0.0004 8.7E-09   62.9   7.4   74   22-95     68-143 (491)
  7 cd03571 ENTH_epsin ENTH domain  95.6   0.042   9E-07   41.2   6.2   84    7-90     29-116 (123)
  8 cd00197 VHS_ENTH_ANTH VHS, ENT  91.0     2.1 4.5E-05   30.6   7.9   79   11-90     33-113 (115)
  9 cd03572 ENTH_epsin_related ENT  87.6     3.5 7.5E-05   31.0   7.1   62   26-87     49-114 (122)
 10 PF08832 SRC-1:  Steroid recept  54.2     6.5 0.00014   27.7   0.9   12   38-49     58-70  (78)
 11 KOG2056|consensus               52.2      59  0.0013   28.6   6.7   56   27-82     71-128 (336)
 12 PF12108 SF3a60_bindingd:  Spli  49.3      13 0.00029   21.2   1.6   17   81-98     12-28  (28)
 13 KOG1766|consensus               44.9      16 0.00036   26.8   1.8   57   66-144    17-73  (104)
 14 KOG2057|consensus               41.9      74  0.0016   28.5   5.8   77   32-108    81-178 (499)
 15 PF09106 SelB-wing_2:  Elongati  41.2      11 0.00023   24.2   0.4   37   90-129     6-44  (59)
 16 TIGR02267 Myxococcus xanthus p  39.8      19 0.00042   27.3   1.6   28   38-67     13-40  (123)
 17 PF09888 DUF2115:  Uncharacteri  33.4      35 0.00076   26.7   2.2   30   75-108   102-134 (163)
 18 COG4496 Uncharacterized protei  33.4      40 0.00087   24.6   2.3   60   13-76     27-88  (100)
 19 PF13591 MerR_2:  MerR HTH fami  26.2      79  0.0017   21.6   2.8   26  117-142    54-79  (84)
 20 COG4066 Uncharacterized protei  23.6 1.2E+02  0.0025   24.2   3.5   30   77-106    96-131 (165)
 21 PRK02292 V-type ATP synthase s  22.6 1.2E+02  0.0027   23.3   3.6   46   95-145   143-188 (188)
 22 smart00541 FYRN "FY-rich" doma  22.3      38 0.00082   20.9   0.5   30   88-120     5-34  (44)
 23 KOG0854|consensus               20.4 1.3E+02  0.0028   24.8   3.3   45   51-130    74-118 (224)
 24 PF08167 RIX1:  rRNA processing  20.0   4E+02  0.0086   20.2   6.7   59   26-89     36-94  (165)

No 1  
>KOG0980|consensus
Probab=100.00  E-value=6.1e-63  Score=454.16  Aligned_cols=143  Identities=48%  Similarity=0.912  Sum_probs=137.9

Q ss_pred             eEEEeecCCCchhhHHhhhcccccCCCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccCCCccchhHHH
Q psy9626           2 NAILGTFHDKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHLKDGYGKLIYQ   81 (145)
Q Consensus         2 ~~Iv~T~~~ksa~~Fw~~~~~~Pl~~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~~~gYG~lI~~   81 (145)
                      +||||||+||||++||+.++++||++|+|+||||||++|||||||||+||+||+||++||.+|||+|+|+++|||+||++
T Consensus        29 t~I~gTh~eksa~~FWt~ik~~PL~~~~VltwKfchllHKvLreGHpsal~es~r~r~~i~~l~r~w~~ls~~Yg~lI~~  108 (980)
T KOG0980|consen   29 TIIVGTHDEKSSKIFWTTIKRQPLENHEVLTWKFCHLLHKVLREGHPSALEESQRYKKWITQLGRMWGHLSDGYGPLIRA  108 (980)
T ss_pred             heeeeecccccchhHHHHhhccccccchHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhccccccchHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCCCCeeechhhhcccccCCCchhHHHHHHHhhhHHHHHHHHHhhhCC
Q psy9626          82 YTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLDEILALQAAVFGE  145 (145)
Q Consensus        82 Y~~lL~~Kl~FH~khp~fpG~le~~e~~l~~~~~~D~n~~fq~~~dlmd~~D~i~~lq~~Vf~~  145 (145)
                      |||||++||.||.|||+|||||+|+++++... +.|||++||||+|||||||+|+.||++||+.
T Consensus       109 Y~klL~~Kl~FH~k~p~FpGtle~s~~~l~~a-v~D~n~~feltvdmmd~~D~ll~lq~~vF~s  171 (980)
T KOG0980|consen  109 YVKLLHDKLSFHAKHPVFPGTLEYSDYQLLTA-VDDLNNGFELTVDMMDYMDSLLELQQTVFSS  171 (980)
T ss_pred             HHHHHHHHHhHhhcCCCCCCCccccHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999855554 5599999999999999999999999999973


No 2  
>PF07651 ANTH:  ANTH domain;  InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=99.96  E-value=9.2e-31  Score=213.99  Aligned_cols=139  Identities=29%  Similarity=0.482  Sum_probs=106.5

Q ss_pred             EEEeecC-CCchhhHHhhhcccccCCCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcc-----cCCCccc
Q psy9626           3 AILGTFH-DKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWF-----HLKDGYG   76 (145)
Q Consensus         3 ~Iv~T~~-~ksa~~Fw~~~~~~Pl~~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~-----~~~~gYG   76 (145)
                      ||.+||. ++.+..||..++|+|..+|.+|+||+|+++||+||||||++..++.++..++.+++++|+     ....+||
T Consensus        27 il~~t~~~~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (280)
T PF07651_consen   27 ILSATSSPESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQELLRYNRRLFDLSNIWDFDDSSSKSWDYS  106 (280)
T ss_dssp             HHHHCSTTS-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHHHHHTT-----TT---T---SSCHHHHHH
T ss_pred             HHHHhcCCccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHHHHHcccchhhhccccccccCCccccchh
Confidence            6788999 999999999999999999999999999999999999999999999999999999999999     2356799


Q ss_pred             hhHHHHHHHHHHHHhhhccCCCCCCCeeechhhhcccccCCCchhHHHHHHHhhhHHHHHHHHHhhhC
Q psy9626          77 KLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLDEILALQAAVFG  144 (145)
Q Consensus        77 ~lI~~Y~~lL~~Kl~FH~khp~fpG~le~~e~~l~~~~~~D~n~~fq~~~dlmd~~D~i~~lq~~Vf~  144 (145)
                      .+|+.|++||..|+.||++++.+||+++.+++ .+....++++.+  .++++++++|.+..+|+.+++
T Consensus       107 ~~ir~Y~~yL~~rl~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~--~~~~~~~lL~~l~~lq~ll~~  171 (280)
T PF07651_consen  107 AFIRAYAKYLDERLSFHRKLKIDPGNLEREEE-GSLVSRDDPNSR--KSLDIDDLLDQLPKLQRLLDR  171 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSS----CCCS---S-----TTSHCC---C--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccccccccccccc-cccccccCcccc--ccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999887 455566777766  999999999999999999874


No 3  
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.87  E-value=6.4e-23  Score=150.64  Aligned_cols=91  Identities=32%  Similarity=0.396  Sum_probs=87.3

Q ss_pred             EEEeecC-CCchhhHHhhhcccccCCCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccC--CCccchhH
Q psy9626           3 AILGTFH-DKSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHL--KDGYGKLI   79 (145)
Q Consensus         3 ~Iv~T~~-~ksa~~Fw~~~~~~Pl~~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~--~~gYG~lI   79 (145)
                      ||.+||. +.++..||+.+.++|..+|.+++||+|+++|++||||||+++.++.+++++|+..+..|...  ..+||.+|
T Consensus        24 ii~~t~~~~~~~~~~~~~l~~Rl~~~~w~v~~K~LillH~llr~G~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~V  103 (117)
T cd03564          24 IIAGTSSSPASIPSFASALSRRLLDRNWVVVLKALILLHRLLREGHPSFLQELLSRRGWLNLSNFLDKSSSLGYGYSAFI  103 (117)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHccCeeeccccccCCCCCchhhhHHH
Confidence            6788999 89999999999999999999999999999999999999999999999999999999999985  67899999


Q ss_pred             HHHHHHHHHHHhhh
Q psy9626          80 YQYTRLLLGKLDFH   93 (145)
Q Consensus        80 ~~Y~~lL~~Kl~FH   93 (145)
                      +.|++||.+|++||
T Consensus       104 r~Ya~yL~~rl~~~  117 (117)
T cd03564         104 RAYARYLDERLSFH  117 (117)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999998


No 4  
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=99.72  E-value=3.6e-18  Score=126.54  Aligned_cols=98  Identities=29%  Similarity=0.295  Sum_probs=88.9

Q ss_pred             EEEeecCCCchhhHHhhhcccccCCC--chhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccC--CCccchh
Q psy9626           3 AILGTFHDKSSTIFWQCASRLPLMEN--VIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHL--KDGYGKL   78 (145)
Q Consensus         3 ~Iv~T~~~ksa~~Fw~~~~~~Pl~~~--~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~--~~gYG~l   78 (145)
                      |+.+|++.+++..+|..+...+|.++  .+++||+|++||++||+|+|.++.+++++...|.+|.++|...  +.+||..
T Consensus        26 I~~~t~~~~~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~~~~~~~~i~~L~~f~~~~~~~~d~g~~  105 (127)
T smart00273       26 IIQGTHNEKSSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILEALRNRNRILNLSDFQDIDSRGKDQGAN  105 (127)
T ss_pred             HHHHHccCHhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHhhHhhCeecCCCCeeCcHH
Confidence            56789999888888888888888765  9999999999999999999999999999999999999999753  5679999


Q ss_pred             HHHHHHHHHHHHhhhccCCCCC
Q psy9626          79 IYQYTRLLLGKLDFHRRNPGFP  100 (145)
Q Consensus        79 I~~Y~~lL~~Kl~FH~khp~fp  100 (145)
                      |+.|+++|..++.||.++++++
T Consensus       106 VR~ya~~L~~~l~~~~~l~~er  127 (127)
T smart00273      106 IRTYAKYLLERLEDDRRLKEER  127 (127)
T ss_pred             HHHHHHHHHHHHcCHHHHhccC
Confidence            9999999999999999988753


No 5  
>PF01417 ENTH:  ENTH domain;  InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups.  Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=97.97  E-value=2.2e-05  Score=57.96  Aligned_cols=85  Identities=14%  Similarity=0.156  Sum_probs=68.2

Q ss_pred             eecCCCchhhHHhhhcccc---cCCCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccC--CCccchhHH
Q psy9626           6 GTFHDKSSTIFWQCASRLP---LMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHL--KDGYGKLIY   80 (145)
Q Consensus         6 ~T~~~ksa~~Fw~~~~~~P---l~~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~--~~gYG~lI~   80 (145)
                      .|++.+++...+..+.++=   =.++..+.+|+|.+++-+|+.|++.++.+.+++..-|+.|..+....  +..+|..|+
T Consensus        30 ~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR  109 (125)
T PF01417_consen   30 LTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVR  109 (125)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHH
Confidence            4677777888888776653   56788999999999999999999999999999999999999887732  345788999


Q ss_pred             HHHHHHHHHH
Q psy9626          81 QYTRLLLGKL   90 (145)
Q Consensus        81 ~Y~~lL~~Kl   90 (145)
                      ..++-+..-|
T Consensus       110 ~~A~~i~~lL  119 (125)
T PF01417_consen  110 EKAKEILELL  119 (125)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999888755


No 6  
>KOG0251|consensus
Probab=97.46  E-value=0.0004  Score=62.85  Aligned_cols=74  Identities=23%  Similarity=0.318  Sum_probs=54.2

Q ss_pred             ccccCCCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHH--HHHhhhcccCCCccchhHHHHHHHHHHHHhhhcc
Q psy9626          22 RLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVI--TNVGKMWFHLKDGYGKLIYQYTRLLLGKLDFHRR   95 (145)
Q Consensus        22 ~~Pl~~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i--~~l~r~w~~~~~gYG~lI~~Y~~lL~~Kl~FH~k   95 (145)
                      |+-=..|=+|++|+|+++|++|++|-|++-.+-.+....|  .+..+--+...-+|+..|+-|.+||-.|+.+=+.
T Consensus        68 Rl~~TrnW~VAlKsLIliH~ll~~G~~~f~~~l~~~~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~  143 (491)
T KOG0251|consen   68 RLNKTRNWTVALKALILIHRLLKEGDPSFEQELLSRNLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRV  143 (491)
T ss_pred             HhCCCcceeehHHHHHHHHHHHhcCcHHHHHHHHhcccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            3334458999999999999999999999998877665111  2222222222345899999999999999988543


No 7  
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=95.65  E-value=0.042  Score=41.25  Aligned_cols=84  Identities=13%  Similarity=0.122  Sum_probs=59.9

Q ss_pred             ecCCCchhhHHhhhccccc--CCCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccC--CCccchhHHHH
Q psy9626           7 TFHDKSSTIFWQCASRLPL--MENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHL--KDGYGKLIYQY   82 (145)
Q Consensus         7 T~~~ksa~~Fw~~~~~~Pl--~~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~--~~gYG~lI~~Y   82 (145)
                      |++.......++.+.++=.  ..+--..+|+|.+++=+|+.|.+.|+.+...|...|+.|..+---.  +...|.-|+.=
T Consensus        29 t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~g~d~G~~VR~k  108 (123)
T cd03571          29 TYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGKDQGINVREK  108 (123)
T ss_pred             hCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeCCCCCchhHHHHHH
Confidence            4443333344444433322  3477889999999999999999999999999999999997654322  33478888877


Q ss_pred             HHHHHHHH
Q psy9626          83 TRLLLGKL   90 (145)
Q Consensus        83 ~~lL~~Kl   90 (145)
                      ++-+..-|
T Consensus       109 a~~i~~Ll  116 (123)
T cd03571         109 AKEILELL  116 (123)
T ss_pred             HHHHHHHh
Confidence            77666543


No 8  
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=90.97  E-value=2.1  Score=30.56  Aligned_cols=79  Identities=10%  Similarity=-0.057  Sum_probs=58.8

Q ss_pred             CchhhHHhhhcccccCCCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccC--CCccchhHHHHHHHHHH
Q psy9626          11 KSSTIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHL--KDGYGKLIYQYTRLLLG   88 (145)
Q Consensus        11 ksa~~Fw~~~~~~Pl~~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~--~~gYG~lI~~Y~~lL~~   88 (145)
                      .++......+.++=-..|+.+..|+|.+++-+++.|.+.+..+..++ ..+.++-+.-...  .+.-|.-|+.+++.|..
T Consensus        33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~-~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~  111 (115)
T cd00197          33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASN-DFAVELLKFDKSKLLGDDVSTNVREKAIELVQ  111 (115)
T ss_pred             ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHh-HHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence            34566667676655567999999999999999999999999986665 5666776651111  22348889999999887


Q ss_pred             HH
Q psy9626          89 KL   90 (145)
Q Consensus        89 Kl   90 (145)
                      ..
T Consensus       112 ~w  113 (115)
T cd00197         112 LW  113 (115)
T ss_pred             HH
Confidence            53


No 9  
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=87.55  E-value=3.5  Score=31.02  Aligned_cols=62  Identities=11%  Similarity=0.139  Sum_probs=50.4

Q ss_pred             CCCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccC----CCccchhHHHHHHHHH
Q psy9626          26 MENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHL----KDGYGKLIYQYTRLLL   87 (145)
Q Consensus        26 ~~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~----~~gYG~lI~~Y~~lL~   87 (145)
                      .++|.|-.|+|-+|=.+++.|++.+..+.+++..-|+++...-+..    ++.-|+.|+.=++=|.
T Consensus        49 ~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~  114 (122)
T cd03572          49 RSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI  114 (122)
T ss_pred             CCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999977655532    3456777776655444


No 10 
>PF08832 SRC-1:  Steroid receptor coactivator;  InterPro: IPR014935 This domain is found in steroid/nuclear receptor coactivators and contains two LXXLL motifs that are involved in receptor binding [] and includes SRC-1/NcoA-1, NcoA-2/TIF2, pCIP/ACTR/GRIP-1/AIB1. ; PDB: 4DMA_F 2O9I_D 2QXM_D 2QGT_D 2QA8_D 2QSE_C 2QA6_D 2QAB_D 2QR9_D 1WM0_Y ....
Probab=54.16  E-value=6.5  Score=27.69  Aligned_cols=12  Identities=42%  Similarity=1.027  Sum_probs=8.1

Q ss_pred             HHHHHhhhc-Cch
Q psy9626          38 VLHKILREG-HPH   49 (145)
Q Consensus        38 ~lHKvLreG-Hp~   49 (145)
                      -|||+||+| -|.
T Consensus        58 ILHrLLQng~SP~   70 (78)
T PF08832_consen   58 ILHRLLQNGNSPV   70 (78)
T ss_dssp             HHHHHHHCS----
T ss_pred             HHHHHHhcCCCHH
Confidence            479999999 553


No 11 
>KOG2056|consensus
Probab=52.23  E-value=59  Score=28.58  Aligned_cols=56  Identities=20%  Similarity=0.286  Sum_probs=42.6

Q ss_pred             CCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccCCCc--cchhHHHH
Q psy9626          27 ENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHLKDG--YGKLIYQY   82 (145)
Q Consensus        27 ~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~~~g--YG~lI~~Y   82 (145)
                      .|=-+.+|+|.||==+|.-|+..|+.++..|.--|+.|-.+---..+|  -|.-|+.=
T Consensus        71 knWR~VyKaLtlleyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkk  128 (336)
T KOG2056|consen   71 KNWRHVYKALTLLEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKK  128 (336)
T ss_pred             chHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHH
Confidence            344678999999999999999999999999999999987654333333  35444433


No 12 
>PF12108 SF3a60_bindingd:  Splicing factor SF3a60 binding domain;  InterPro: IPR021966  This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=49.31  E-value=13  Score=21.22  Aligned_cols=17  Identities=47%  Similarity=0.733  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHhhhccCCC
Q psy9626          81 QYTRLLLGKLDFHRRNPG   98 (145)
Q Consensus        81 ~Y~~lL~~Kl~FH~khp~   98 (145)
                      =|-+|=..| +||++||.
T Consensus        12 FY~rlk~Ik-e~Hrr~Pn   28 (28)
T PF12108_consen   12 FYERLKEIK-EYHRRYPN   28 (28)
T ss_dssp             HHHHHHHHH-HHHHS--S
T ss_pred             HHHHHHHHH-HHHHhCCC
Confidence            344444444 89999983


No 13 
>KOG1766|consensus
Probab=44.87  E-value=16  Score=26.80  Aligned_cols=57  Identities=14%  Similarity=0.408  Sum_probs=32.4

Q ss_pred             hhcccCCCccchhHHHHHHHHHHHHhhhccCCCCCCCeeechhhhcccccCCCchhHHHHHHHhhhHHHHHHHHHhhhC
Q psy9626          66 KMWFHLKDGYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLDEILALQAAVFG  144 (145)
Q Consensus        66 r~w~~~~~gYG~lI~~Y~~lL~~Kl~FH~khp~fpG~le~~e~~l~~~~~~D~n~~fq~~~dlmd~~D~i~~lq~~Vf~  144 (145)
                      |.|+.-. .-+.+...-|++-..+|.  ++||                  +-|+..|. |++|++..|.+-.+.-.||.
T Consensus        17 RT~~DYe-sv~e~megiCk~yEe~Lk--k~nP------------------s~~~ITYD-IsqlfeFiD~L~DlS~lVy~   73 (104)
T KOG1766|consen   17 RTWGDYE-SVTECMEGICKMYEEHLK--KKNP------------------SAPPITYD-ISQLFEFIDDLADLSMLVYN   73 (104)
T ss_pred             ccccchH-hHHHHHHHHHHHHHHHHH--hcCC------------------CCCCccee-HHHHHHHHHHHhhhhhhhee
Confidence            4554321 246677777776555443  3444                  33333343 45677777877777777764


No 14 
>KOG2057|consensus
Probab=41.94  E-value=74  Score=28.54  Aligned_cols=77  Identities=18%  Similarity=0.233  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccC--CCccchhHHHHHHHHHHHH---------------hhhc
Q psy9626          32 AWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHL--KDGYGKLIYQYTRLLLGKL---------------DFHR   94 (145)
Q Consensus        32 ~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~--~~gYG~lI~~Y~~lL~~Kl---------------~FH~   94 (145)
                      .||.|++|--+|+.|..-++.++..|.=-|+.|...---.  +..-|--|++=+|-|+.-+               +=-.
T Consensus        81 VYKSLiLLaYLikNGSER~VqeAREh~YdLR~LEnYhfiDEhGKDQGINIR~kVKeilEfanDDd~Lq~ERkKAkkddKd  160 (499)
T KOG2057|consen   81 VYKSLILLAYLIKNGSERFVQEAREHAYDLRRLENYHFIDEHGKDQGINIRHKVKEILEFANDDDLLQAERKKAKKDDKD  160 (499)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhhhCccccccHHHHHHHHHHHhccHHHHHHHHHhhccccch
Confidence            4799999999999999999999998887777776533211  2335777888887665322               1134


Q ss_pred             cCCCCC----CCeeechh
Q psy9626          95 RNPGFP----GNLILSQS  108 (145)
Q Consensus        95 khp~fp----G~le~~e~  108 (145)
                      |+.+|.    |.|-++|.
T Consensus       161 KY~G~~qd~mggf~~Sek  178 (499)
T KOG2057|consen  161 KYRGFDQDDMGGFGSSEK  178 (499)
T ss_pred             hccccchhhccccccccc
Confidence            667774    77877765


No 15 
>PF09106 SelB-wing_2:  Elongation factor SelB, winged helix ;  InterPro: IPR015190 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 2".  The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2V9V_A 1LVA_A 2PLY_A 2UWM_A.
Probab=41.16  E-value=11  Score=24.18  Aligned_cols=37  Identities=30%  Similarity=0.449  Sum_probs=21.8

Q ss_pred             HhhhccCCCCCCCeeechhhh-ccccc-CCCchhHHHHHHHh
Q psy9626          90 LDFHRRNPGFPGNLILSQSEL-DRIGE-NDINNYFQMSVEMF  129 (145)
Q Consensus        90 l~FH~khp~fpG~le~~e~~l-~~~~~-~D~n~~fq~~~dlm  129 (145)
                      -+||++||.=+|-=   -+++ +.... .-+.+.|+.+++.+
T Consensus         6 ~~yH~~~Plr~G~~---keeLrsrl~~~~l~~k~~~~ll~~l   44 (59)
T PF09106_consen    6 AEYHRENPLRPGMP---KEELRSRLFKPRLPPKLFNALLEAL   44 (59)
T ss_dssp             HHHHHH-TTSS-EE---HHHHHHHCST-TS-HCCHHHHHHHH
T ss_pred             HHHHHHCcCccCcC---HHHHHHHHhhccCCHHHHHHHHHHH
Confidence            37999999988742   2235 35544 55677777776654


No 16 
>TIGR02267 Myxococcus xanthus paralogous family TIGR02267. This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=39.84  E-value=19  Score=27.27  Aligned_cols=28  Identities=18%  Similarity=0.539  Sum_probs=21.2

Q ss_pred             HHHHHhhhcCchhHHHHHHhHHHHHHHhhh
Q psy9626          38 VLHKILREGHPHVIKESIKQAQVITNVGKM   67 (145)
Q Consensus        38 ~lHKvLreGHp~vl~ds~r~~~~i~~l~r~   67 (145)
                      +.|.|+++|+|-+|.+-.|  ..|.--++=
T Consensus        13 L~rRV~~~GepL~Lt~evR--alL~RtA~E   40 (123)
T TIGR02267        13 LARRVLRLGEPLVLTDEVR--ALLLRTARE   40 (123)
T ss_pred             HHHHHHhcCCCccccHHHH--HHHHHhHHH
Confidence            6799999999999998874  555544433


No 17 
>PF09888 DUF2115:  Uncharacterized protein conserved in archaea (DUF2115);  InterPro: IPR019215  This entry represents various hypothetical archaeal proteins, has no known function. 
Probab=33.45  E-value=35  Score=26.71  Aligned_cols=30  Identities=27%  Similarity=0.470  Sum_probs=20.4

Q ss_pred             cchhHHHHHHHHHHHHhhhccCC---CCCCCeeechh
Q psy9626          75 YGKLIYQYTRLLLGKLDFHRRNP---GFPGNLILSQS  108 (145)
Q Consensus        75 YG~lI~~Y~~lL~~Kl~FH~khp---~fpG~le~~e~  108 (145)
                      +-.+|+.|+-++..|    =-||   .|||++.+.+.
T Consensus       102 l~~lis~Y~~FI~~~----PlHPvG~~FPGG~~V~~~  134 (163)
T PF09888_consen  102 LYYLISPYLIFILKE----PLHPVGMPFPGGFKVEEK  134 (163)
T ss_pred             HHHHHHHHHHHHhCC----CCCCCCCCCCCCeEEEEE
Confidence            345666777766665    3344   79999999754


No 18 
>COG4496 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.37  E-value=40  Score=24.60  Aligned_cols=60  Identities=23%  Similarity=0.252  Sum_probs=36.2

Q ss_pred             hhhHHhhhcccccCCCchhHHHHHHHHHHHhhhcCc-hhH-HHHHHhHHHHHHHhhhcccCCCccc
Q psy9626          13 STIFWQCASRLPLMENVIVAWKFCHVLHKILREGHP-HVI-KESIKQAQVITNVGKMWFHLKDGYG   76 (145)
Q Consensus        13 a~~Fw~~~~~~Pl~~~~v~~wK~~~~lHKvLreGHp-~vl-~ds~r~~~~i~~l~r~w~~~~~gYG   76 (145)
                      +-.|+.-+-.    -|+|++.--=.-|-|+|+||++ +.+ .|+-.....|.-..|--.+..+||.
T Consensus        27 cy~FfdDlcT----inEiqslaqRlqVa~mL~eg~tY~~I~~eTGaStaTIsRVkRcl~yGndgY~   88 (100)
T COG4496          27 CYAFFDDLCT----INEIQSLAQRLQVAKMLKEGRTYRDIEDETGASTATISRVKRCLNYGNDGYA   88 (100)
T ss_pred             HHHHHHhhcC----HHHHHHHHHHHHHHHHHHcCCCcchhhhccCcchhhHHHHHHHHHcCCcHHH
Confidence            4445554433    3678877777889999999999 333 3333344444444444444566674


No 19 
>PF13591 MerR_2:  MerR HTH family regulatory protein
Probab=26.16  E-value=79  Score=21.63  Aligned_cols=26  Identities=23%  Similarity=0.327  Sum_probs=17.1

Q ss_pred             CCchhHHHHHHHhhhHHHHHHHHHhh
Q psy9626         117 DINNYFQMSVEMFDYLDEILALQAAV  142 (145)
Q Consensus       117 D~n~~fq~~~dlmd~~D~i~~lq~~V  142 (145)
                      |.+-..+.+.=++|++|.+..||+.+
T Consensus        54 Dl~in~~gi~lil~LLd~i~~L~~el   79 (84)
T PF13591_consen   54 DLGINLEGIALILDLLDRIEQLRREL   79 (84)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555566668888888764


No 20 
>COG4066 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.60  E-value=1.2e+02  Score=24.16  Aligned_cols=30  Identities=27%  Similarity=0.578  Sum_probs=20.1

Q ss_pred             hhHHHHHHHHHHHHhhhccCC------CCCCCeeec
Q psy9626          77 KLIYQYTRLLLGKLDFHRRNP------GFPGNLILS  106 (145)
Q Consensus        77 ~lI~~Y~~lL~~Kl~FH~khp------~fpG~le~~  106 (145)
                      ++-..|+++++.=+.|=++-|      .|||+|++.
T Consensus        96 ~~f~~i~~i~~~Y~tfvrkEPlHPpgt~FPGgfkVr  131 (165)
T COG4066          96 ERFINISKILCPYLTFVRKEPLHPPGTTFPGGFKVR  131 (165)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCCcCCCceEEE
Confidence            334455666666666666644      899999985


No 21 
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=22.62  E-value=1.2e+02  Score=23.29  Aligned_cols=46  Identities=24%  Similarity=0.413  Sum_probs=33.1

Q ss_pred             cCCCCCCCeeechhhhcccccCCCchhHHHHHHHhhhHHHHHHHHHhhhCC
Q psy9626          95 RNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLDEILALQAAVFGE  145 (145)
Q Consensus        95 khp~fpG~le~~e~~l~~~~~~D~n~~fq~~~dlmd~~D~i~~lq~~Vf~~  145 (145)
                      ..+.+.|+|.++..    -+....|+.|++.++.+ ..+......+.+|++
T Consensus       143 ~~~~~~GGvil~~~----~g~I~~dnT~~~rl~~~-~~~~~~~i~~~LF~~  188 (188)
T PRK02292        143 GNIDCLGGVVVESE----DGRVRVNNTFDSILEDV-WEDNLKEISDRLFGE  188 (188)
T ss_pred             CCCCCCceEEEEec----CCceEEeccHHHHHHHH-HHHhhHHHHHHhcCC
Confidence            45778999999632    34557799999999876 455666677777764


No 22 
>smart00541 FYRN "FY-rich" domain, N-terminal region. is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=22.34  E-value=38  Score=20.92  Aligned_cols=30  Identities=20%  Similarity=0.144  Sum_probs=22.7

Q ss_pred             HHHhhhccCCCCCCCeeechhhhcccccCCCch
Q psy9626          88 GKLDFHRRNPGFPGNLILSQSELDRIGENDINN  120 (145)
Q Consensus        88 ~Kl~FH~khp~fpG~le~~e~~l~~~~~~D~n~  120 (145)
                      ..-.||.++.-||.+|..+-.++|..   ||++
T Consensus         5 ~~~~fh~~~~IyP~Gy~s~R~y~S~~---dp~~   34 (44)
T smart00541        5 QGKLFHSEDAIFPVGYKSTRKYWSVK---DPNR   34 (44)
T ss_pred             cCCCcccCCEEecCCEEEEEEEeccc---CCCC
Confidence            34579999999999999986666554   6653


No 23 
>KOG0854|consensus
Probab=20.38  E-value=1.3e+02  Score=24.77  Aligned_cols=45  Identities=16%  Similarity=0.217  Sum_probs=27.6

Q ss_pred             HHHHHHhHHHHHHHhhhcccCCCccchhHHHHHHHHHHHHhhhccCCCCCCCeeechhhhcccccCCCchhHHHHHHHhh
Q psy9626          51 IKESIKQAQVITNVGKMWFHLKDGYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFD  130 (145)
Q Consensus        51 l~ds~r~~~~i~~l~r~w~~~~~gYG~lI~~Y~~lL~~Kl~FH~khp~fpG~le~~e~~l~~~~~~D~n~~fq~~~dlmd  130 (145)
                      +.+...|.+|+++               |.+|++.             +|+.|.|+       -+.|+|.-.-....|+|
T Consensus        74 ~d~vesH~~Wi~D---------------Iks~~~~-------------~~~~~~yP-------IIaD~~rela~~l~MlD  118 (224)
T KOG0854|consen   74 VDDVESHKDWIKD---------------IKSYAKV-------------KNHSVPYP-------IIADPNRELAFLLNMLD  118 (224)
T ss_pred             hhhHHHHHHHHHH---------------HHHHHhc-------------cCCCCCCC-------eecCCchhhhhhhcccC
Confidence            3566788889888               5666642             45544442       25577766666666554


No 24 
>PF08167 RIX1:  rRNA processing/ribosome biogenesis
Probab=20.03  E-value=4e+02  Score=20.21  Aligned_cols=59  Identities=7%  Similarity=0.022  Sum_probs=39.9

Q ss_pred             CCCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccCCCccchhHHHHHHHHHHH
Q psy9626          26 MENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHLKDGYGKLIYQYTRLLLGK   89 (145)
Q Consensus        26 ~~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~~~gYG~lI~~Y~~lL~~K   89 (145)
                      ++++=..|+.+.+++.+.++|-+.++.+..  ..|++.|-..-..   .-++-+.+++-...++
T Consensus        36 s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~--~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~   94 (165)
T PF08167_consen   36 SKSAYSRWAGLCLLKVTVEQCSWEILLSHG--SQWLRALLSILEK---PDPPSVLEAAIITLTR   94 (165)
T ss_pred             CCChhhHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHcC---CCCHHHHHHHHHHHHH
Confidence            445778999999999999999888885544  4888887655443   2344444444444444


Done!