Query psy9626
Match_columns 145
No_of_seqs 107 out of 129
Neff 5.3
Searched_HMMs 29240
Date Sat Aug 17 00:33:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 99.9 5E-23 1.7E-27 171.3 1.0 128 3-144 47-191 (299)
2 3zyl_A Phosphatidylinositol-bi 99.8 1.5E-22 5E-27 167.2 2.8 127 3-144 52-184 (271)
3 3zym_A Phosphatidylinositol-bi 99.8 4E-22 1.4E-26 167.3 3.9 127 3-144 52-184 (310)
4 1inz_A EPS15-interacting porte 97.4 0.00081 2.8E-08 50.9 8.2 85 6-90 50-138 (148)
5 1eyh_A Epsin; superhelix of he 97.2 0.00077 2.6E-08 50.7 6.2 84 7-90 33-120 (144)
6 3onk_A Epsin-3, ENT3; helix, p 96.0 0.013 4.4E-07 44.4 5.8 64 27-90 62-127 (150)
7 1xgw_A Epsin 4; ENTH, enthopro 95.7 0.034 1.2E-06 43.1 7.4 85 6-90 61-150 (176)
8 1vdy_A Hypothetical protein (R 89.1 1 3.4E-05 33.6 6.2 75 15-89 49-127 (140)
9 3bej_E Nuclear receptor coacti 82.6 0.47 1.6E-05 25.8 1.1 12 38-49 14-25 (26)
10 2prg_C Nuclear receptor coacti 64.0 2.4 8.2E-05 29.4 1.1 12 38-49 67-78 (88)
11 1dow_B Beta-catenin; four-heli 50.3 4 0.00014 23.3 0.3 13 123-135 17-29 (32)
12 2dt7_A Splicing factor 3A subu 31.6 31 0.0011 20.0 2.2 20 78-98 12-31 (38)
13 2k9j_B Integrin beta-3; transm 22.3 45 0.0015 19.7 1.7 12 30-41 28-39 (43)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=99.85 E-value=5e-23 Score=171.34 Aligned_cols=128 Identities=14% Similarity=0.087 Sum_probs=96.3
Q ss_pred EEEeecCCCc--hhhHHhhhcccccCCCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhh----------ccc
Q psy9626 3 AILGTFHDKS--STIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKM----------WFH 70 (145)
Q Consensus 3 ~Iv~T~~~ks--a~~Fw~~~~~~Pl~~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~----------w~~ 70 (145)
||++||++++ +..||....| |..+|.+|+||+|+++|||||||||+++++..++. .+-+|+.+ |++
T Consensus 47 ii~~t~~~~~~~~~~~~~L~~R-~~~~~w~va~K~LivlH~llreG~~~~~~~l~~~~-~~l~l~~f~D~~~~~~~~~~~ 124 (299)
T 1hx8_A 47 LVHCANEPNVSIPHLANLLIER-SQNANWVVVYKSLITTHHLMAYGNERFMQYLASSN-STFNLSSFLDKGTVQDGGMGV 124 (299)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT-CCCCCTTCCCCCC---CCSSC
T ss_pred HHHHHcCCCCCHHHHHHHHHhh-ccCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHhCC-cccchhhhhcccccccccccc
Confidence 7789999999 5556665555 99999999999999999999999999999998754 34445433 655
Q ss_pred CC--C--ccchhHHHHHHHHHHH-HhhhccCCCCCCCeeechhhhcccccCCCchhHHHHHHHhhhHHHHHHHHHhhhC
Q psy9626 71 LK--D--GYGKLIYQYTRLLLGK-LDFHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLDEILALQAAVFG 144 (145)
Q Consensus 71 ~~--~--gYG~lI~~Y~~lL~~K-l~FH~khp~fpG~le~~e~~l~~~~~~D~n~~fq~~~dlmd~~D~i~~lq~~Vf~ 144 (145)
.+ + +||.+|+.|++||.+| +.||..+.+|. . + . .++++++....++..++|.+..||+.|++
T Consensus 125 ~~~~~~~d~s~~Ir~Ya~yL~~r~~~f~~~~~d~~------~--~--~--~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ 191 (299)
T 1hx8_A 125 PGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDFC------K--V--K--RGKEEGSLRSMNAEKLLKTLPVLQAQLDA 191 (299)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGG------G--C---------CCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHhCCCcc------c--c--c--cCccccchhhCCHHHHHHHHHHHHHHHHH
Confidence 42 2 4899999999999999 79999996552 1 1 1 13334444444556699999999999884
No 2
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=99.85 E-value=1.5e-22 Score=167.25 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=103.4
Q ss_pred EEEeecCCCch-hhHHhhh-cccccCCCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccCC-C--ccch
Q psy9626 3 AILGTFHDKSS-TIFWQCA-SRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHLK-D--GYGK 77 (145)
Q Consensus 3 ~Iv~T~~~ksa-~~Fw~~~-~~~Pl~~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~~-~--gYG~ 77 (145)
||++||+++++ .++|..+ .|++ .+|.+|+||+|+++||+||||||++++++.++.. +.+|+++|.+.+ + +||+
T Consensus 52 il~~T~~~~~~~~~~~~~L~~Rl~-~~~w~v~~KaLivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~~~~~s~ 129 (271)
T 3zyl_A 52 LIQCTNEMNVNIPQLADSLFERTT-NSSWVVVFKSLITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMST 129 (271)
T ss_dssp HHHHHHSTTSCHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHH
T ss_pred HHHHHccCCCcHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHHhcCCHHHHHHHHhCCC-eechhccCCCCCCCcccccH
Confidence 77899998864 6777766 4777 8899999999999999999999999999988764 569999887642 3 4779
Q ss_pred hHHHHHHHHHHHHh-hhccCCCCCCCeeechhhhcccccCCCchhHHHHHHHhhhHHHHHHHHHhhhC
Q psy9626 78 LIYQYTRLLLGKLD-FHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLDEILALQAAVFG 144 (145)
Q Consensus 78 lI~~Y~~lL~~Kl~-FH~khp~fpG~le~~e~~l~~~~~~D~n~~fq~~~dlmd~~D~i~~lq~~Vf~ 144 (145)
+|+.|++||.+|+. ||..++.|++. .++++++.-..++..++|.+..||+.+++
T Consensus 130 ~Ir~Ya~yL~eRl~~f~~~~~d~~~~-------------k~~~~~~~r~~~~~~Ll~~l~~lQ~lld~ 184 (271)
T 3zyl_A 130 FIRRYSRYLNEKAVSYRQVAFDFTKV-------------KRGADGVMRTMNTEKLLKTVPIIQNQMDA 184 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTTS-------------CCSTTSHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccc-------------CCCCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999997 99999999752 12344555555667788888888888763
No 3
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=99.84 E-value=4e-22 Score=167.25 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=101.4
Q ss_pred EEEeecCCCch--hhHHhhhcccccCCCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccCC---Cccch
Q psy9626 3 AILGTFHDKSS--TIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHLK---DGYGK 77 (145)
Q Consensus 3 ~Iv~T~~~ksa--~~Fw~~~~~~Pl~~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~~---~gYG~ 77 (145)
||.+||+++++ ..+|....|++ .+|.+|+||+|+++||+||||||++++++.++.. +.+|+++|.+.+ .+||+
T Consensus 52 il~~T~~~~~~~~~i~~~L~~Rl~-~~~w~vv~KaLivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~g~~~~~ 129 (310)
T 3zym_A 52 LIQCTNEMNVNIPQLADSLFERTT-NSSWVVVFKSLITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMST 129 (310)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHH
T ss_pred HHHHHccCCCcHHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHhcCCHHHHHHHHhCCC-eeecccccCCCCcCcccccH
Confidence 67899999874 45555556888 7899999999999999999999999999988775 459999997643 45889
Q ss_pred hHHHHHHHHHHHHh-hhccCCCCCCCeeechhhhcccccCCCchhHHHHHHHhhhHHHHHHHHHhhhC
Q psy9626 78 LIYQYTRLLLGKLD-FHRRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLDEILALQAAVFG 144 (145)
Q Consensus 78 lI~~Y~~lL~~Kl~-FH~khp~fpG~le~~e~~l~~~~~~D~n~~fq~~~dlmd~~D~i~~lq~~Vf~ 144 (145)
+|+.|++||..|+. ||..++.|... .++++++.-..++..+++.+..+|+.+++
T Consensus 130 ~Ir~Ya~yL~~Rl~~f~~~~~d~~~~-------------~~~~~~~~r~~~~~~Ll~~l~~lQ~lid~ 184 (310)
T 3zym_A 130 FIRRYSRYLNEKAVSYRQVAFDFTKV-------------KRGADGVMRTMNTEKLLKTVPIIQNQMDA 184 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCTTTS-------------CCSTTSHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccc-------------cCCCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999998531 12334554555666788888888887753
No 4
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=97.36 E-value=0.00081 Score=50.87 Aligned_cols=85 Identities=9% Similarity=0.079 Sum_probs=64.3
Q ss_pred eecCCCchhhHHhhhcccccC--CCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhccc--CCCccchhHHH
Q psy9626 6 GTFHDKSSTIFWQCASRLPLM--ENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFH--LKDGYGKLIYQ 81 (145)
Q Consensus 6 ~T~~~ksa~~Fw~~~~~~Pl~--~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~--~~~gYG~lI~~ 81 (145)
.|++.......+..+.++=-. .+--+.+|+|.+||=+|+.|.+.|+.++..|...|+.|..+--- .+...|.-|+.
T Consensus 50 ~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~ 129 (148)
T 1inz_A 50 LTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVRE 129 (148)
T ss_dssp HHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHH
T ss_pred HhCCHhhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHH
Confidence 355554444455555444222 36789999999999999999999999999999999999985222 23347999999
Q ss_pred HHHHHHHHH
Q psy9626 82 YTRLLLGKL 90 (145)
Q Consensus 82 Y~~lL~~Kl 90 (145)
+++.|++-|
T Consensus 130 kAk~l~~LL 138 (148)
T 1inz_A 130 KAKQLVALL 138 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 5
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=97.17 E-value=0.00077 Score=50.73 Aligned_cols=84 Identities=10% Similarity=0.097 Sum_probs=62.0
Q ss_pred ecCCCchhhHHhhhcccccC--CCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhccc--CCCccchhHHHH
Q psy9626 7 TFHDKSSTIFWQCASRLPLM--ENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFH--LKDGYGKLIYQY 82 (145)
Q Consensus 7 T~~~ksa~~Fw~~~~~~Pl~--~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~--~~~gYG~lI~~Y 82 (145)
|++.......+..+.++=-. .+--+.+|+|.+||=+|+.|.+.|+.++..|...|+.|..+--- .+...|.-|+.+
T Consensus 33 T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~k 112 (144)
T 1eyh_A 33 TYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREK 112 (144)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHH
T ss_pred hCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHHHHHHhhHHHhhhccceeeCCCccchHHHHHHH
Confidence 44443333344444333222 36779999999999999999999999999999999999986322 234479999999
Q ss_pred HHHHHHHH
Q psy9626 83 TRLLLGKL 90 (145)
Q Consensus 83 ~~lL~~Kl 90 (145)
++.|+.-|
T Consensus 113 ak~l~~Ll 120 (144)
T 1eyh_A 113 AKQLVALL 120 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 6
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=95.97 E-value=0.013 Score=44.37 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=54.2
Q ss_pred CCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccC--CCccchhHHHHHHHHHHHH
Q psy9626 27 ENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHL--KDGYGKLIYQYTRLLLGKL 90 (145)
Q Consensus 27 ~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~--~~gYG~lI~~Y~~lL~~Kl 90 (145)
.+--+.+|+|.+|+=+|+.|.+.|+.++..|...|+.|..+---. +...|.-|+..++-|+.=|
T Consensus 62 k~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL 127 (150)
T 3onk_A 62 SEWRQIYKALQLLDYLIKHGSERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELL 127 (150)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999998743322 3447999999999887654
No 7
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=95.72 E-value=0.034 Score=43.08 Aligned_cols=85 Identities=16% Similarity=0.104 Sum_probs=64.6
Q ss_pred eecCCCchhhHHhhhccccc---CCCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccC--CCccchhHH
Q psy9626 6 GTFHDKSSTIFWQCASRLPL---MENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHL--KDGYGKLIY 80 (145)
Q Consensus 6 ~T~~~ksa~~Fw~~~~~~Pl---~~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~--~~gYG~lI~ 80 (145)
.|++.......+..+-++=+ ..+--+.+|+|.+|+=+|+.|.+.|+.++..|..-|++|..+---. +...|.-|+
T Consensus 61 ~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR 140 (176)
T 1xgw_A 61 ATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIR 140 (176)
T ss_dssp HTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHH
T ss_pred HhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCCChHHHHH
Confidence 35555555555555533322 3578999999999999999999999999999999999998764322 344799999
Q ss_pred HHHHHHHHHH
Q psy9626 81 QYTRLLLGKL 90 (145)
Q Consensus 81 ~Y~~lL~~Kl 90 (145)
..++-|+.-|
T Consensus 141 ~kAk~i~~LL 150 (176)
T 1xgw_A 141 QKVKELVEFA 150 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=89.14 E-value=1 Score=33.55 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=59.4
Q ss_pred hHHhhhcccccCCCchhHHHHHHHHHHHhhhcCchhHHHHHHhHHHHHHHhhhcccC----CCccchhHHHHHHHHHHH
Q psy9626 15 IFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHL----KDGYGKLIYQYTRLLLGK 89 (145)
Q Consensus 15 ~Fw~~~~~~Pl~~~~v~~wK~~~~lHKvLreGHp~vl~ds~r~~~~i~~l~r~w~~~----~~gYG~lI~~Y~~lL~~K 89 (145)
..+..+.++=-..++-+-+|+|-+|=-+++.|++.++.+..+|...|+.|..+-+.. ++.-|..++.-++=|..=
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 344444444445677899999999999999999999999999999999998766653 355788899888877653
No 9
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=82.63 E-value=0.47 Score=25.81 Aligned_cols=12 Identities=50% Similarity=1.151 Sum_probs=10.1
Q ss_pred HHHHHhhhcCch
Q psy9626 38 VLHKILREGHPH 49 (145)
Q Consensus 38 ~lHKvLreGHp~ 49 (145)
.+|++||+|.|+
T Consensus 14 ILHrLLQ~~sP~ 25 (26)
T 3bej_E 14 ILHRLLQEGSPS 25 (26)
T ss_pred HHHHHHHcCCCC
Confidence 579999999774
No 10
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=63.98 E-value=2.4 Score=29.39 Aligned_cols=12 Identities=50% Similarity=1.151 Sum_probs=10.2
Q ss_pred HHHHHhhhcCch
Q psy9626 38 VLHKILREGHPH 49 (145)
Q Consensus 38 ~lHKvLreGHp~ 49 (145)
.|||+||||-|+
T Consensus 67 ILHrLLQ~gSP~ 78 (88)
T 2prg_C 67 ILHRLLQEGSPS 78 (88)
T ss_dssp HHHHHHHSSCCC
T ss_pred HHHHHHhcCChH
Confidence 479999999875
No 11
>1dow_B Beta-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus}
Probab=50.30 E-value=4 Score=23.28 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=10.8
Q ss_pred HHHHHHhhhHHHH
Q psy9626 123 QMSVEMFDYLDEI 135 (145)
Q Consensus 123 q~~~dlmd~~D~i 135 (145)
+.+++||+|||.-
T Consensus 17 ~avv~LinyQDda 29 (32)
T 1dow_B 17 HAVVNLINYQDDA 29 (32)
T ss_dssp HHHHHHHHCCCTT
T ss_pred HHHHHHHhccccc
Confidence 5689999999964
No 12
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.63 E-value=31 Score=19.95 Aligned_cols=20 Identities=40% Similarity=0.670 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHhhhccCCC
Q psy9626 78 LIYQYTRLLLGKLDFHRRNPG 98 (145)
Q Consensus 78 lI~~Y~~lL~~Kl~FH~khp~ 98 (145)
+-.=|-++=-.| +||++||.
T Consensus 12 f~~FY~rlk~Ik-e~Hrr~P~ 31 (38)
T 2dt7_A 12 FAEFYNRLKQIK-EFHRKHPN 31 (38)
T ss_dssp HHHHHHHHHHHH-HHHHSCCS
T ss_pred HHHHHHHHHHHH-HHHHhCCC
Confidence 334455554455 99999995
No 13
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=22.30 E-value=45 Score=19.69 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHH
Q psy9626 30 IVAWKFCHVLHK 41 (145)
Q Consensus 30 v~~wK~~~~lHK 41 (145)
+..||.|.++|-
T Consensus 28 Lliwk~~~~i~D 39 (43)
T 2k9j_B 28 LLIWKLLITIHD 39 (43)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHheeh
Confidence 468999999884
Done!