RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9626
(145 letters)
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis,
endobrevin, synaptobrevin, VAMP2, VAMP3, AP180,
membrane, adaptor protein; 1.70A {Rattus norvegicus}
PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Length = 271
Score = 58.3 bits (140), Expect = 4e-11
Identities = 18/143 (12%), Positives = 40/143 (27%), Gaps = 15/143 (10%)
Query: 4 ILGTFHDKSS-TIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQV-- 60
I T + + +V +K H ++ G+ I+ + +
Sbjct: 53 IQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFN 112
Query: 61 ITNVGKMWFHLKDGYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINN 120
++N I +Y+R L K +R+ ++
Sbjct: 113 LSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFT----------KVKRGADGV 162
Query: 121 YFQMSVEMFDYLDEILALQAAVF 143
M+ E L + +Q +
Sbjct: 163 MRTMNTE--KLLKTVPIIQNQMD 183
>3zym_A Phosphatidylinositol-binding clathrin assembly PR
vesicle-associated membrane protein...; endocytosis,
synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A
{Rattus norvegicus}
Length = 310
Score = 56.0 bits (134), Expect = 2e-10
Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 15/143 (10%)
Query: 4 ILGTFHDKSS-TIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKE--SIKQAQV 60
I T + + +V +K H ++ G+ I+ S
Sbjct: 53 IQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFN 112
Query: 61 ITNVGKMWFHLKDGYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSELDRIGENDINN 120
++N I +Y+R L K +R+ ++
Sbjct: 113 LSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFT----------KVKRGADGV 162
Query: 121 YFQMSVEMFDYLDEILALQAAVF 143
M+ E L + +Q +
Sbjct: 163 MRTMNTE--KLLKTVPIIQNQMD 183
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha
helices repeats, coiled-coil, endocytosis/exocytosis
complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2
a.118.9.3
Length = 299
Score = 49.9 bits (118), Expect = 4e-08
Identities = 18/154 (11%), Positives = 38/154 (24%), Gaps = 25/154 (16%)
Query: 4 ILGTFHDKSSTIFWQCA-SRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVI- 61
+ S N +V +K H ++ G+ ++
Sbjct: 48 VHCANEPNVSIPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLASSNSTFN 107
Query: 62 ------------TNVGKMWFHLKDGYGKLIYQYTRLLLGKLDFHRRNPGFPGNLILSQSE 109
+G + I +Y + L K +R ++
Sbjct: 108 LSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKSLSYRA---------MAFDF 158
Query: 110 LDRIGENDINNYFQMSVEMFDYLDEILALQAAVF 143
+ + M+ E L + LQA +
Sbjct: 159 CKVKRGKEEGSLRSMNAE--KLLKTLPVLQAQLD 190
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.33
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 23 LPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQ 59
LP +E ++ K+ +L L + +E+ KQ Q
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 26.7 bits (58), Expect = 3.5
Identities = 8/63 (12%), Positives = 20/63 (31%), Gaps = 8/63 (12%)
Query: 40 HKILREGHPHVIKESIKQAQVITNVGKMWFHLKDGYGKLIYQYTRLLLGKLDFHRRNPGF 99
+ + R +++++ + + NV G GK T + L ++
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVL---IDGVLGSGK-----TWVALDVCLSYKVQCKM 180
Query: 100 PGN 102
Sbjct: 181 DFK 183
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 26.5 bits (58), Expect = 3.3
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 11/112 (9%)
Query: 34 KFCHVLHKILREGHPHVIKESIKQAQVITNVGKMWFHLKDGYGKLIYQYTRLLLGKLDFH 93
K H++ + R G +S+ + + VG + I +++ G
Sbjct: 243 KCMHLIQQGARVGRIDAFVQSLDK-NFMVPVGGAIIAGFNE--PFIQDISKMYPG----- 294
Query: 94 RRNPGFPGNLILSQSELDRIGENDINNYFQMSVEMFDYLDEILALQAAVFGE 145
R P L + + L +G + + EMF YL L A E
Sbjct: 295 -RASASPS-LDVLITLLS-LGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNE 343
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics; 2.80A {Geobacillus stearothermophilus} SCOP:
a.195.1.1
Length = 168
Score = 26.3 bits (58), Expect = 3.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 102 NLILSQSELDRIGE-NDINNYFQMSVEM---FDYLDEILALQAA-VFG 144
N IL+ +LD++ E ++ Q + +DEILAL V+G
Sbjct: 65 NAILTGIQLDKLAEDGRLDEPLQSIIRRDEGLYGVDEILALSIVNVYG 112
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 25.8 bits (57), Expect = 6.0
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 82 YTRLLLGKLDFHRRNPGFPGNLILSQSELDRI 113
+ + LDF + P ++ QS + +
Sbjct: 122 FAGIFTQGLDFGLVDTRHPYTGLVPQSRTEAL 153
>1x66_A Friend leukemia integration 1 transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 24.9 bits (54), Expect = 6.5
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 85 LLLGKLDFHRRNPGFPGNLILSQSEL 110
+ K DF R + ++LS
Sbjct: 62 CKMNKEDFLRATTLYNTEVLLSHLSY 87
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein;
NMR {Homo sapiens} SCOP: a.60.1.1
Length = 97
Score = 24.9 bits (54), Expect = 6.9
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 85 LLLGKLDFHRRNPGFPGNLILSQSEL 110
+ K DF R P + +++LS
Sbjct: 65 CKMTKDDFQRLTPSYNADILLSHLHY 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 7.6
Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 39/92 (42%)
Query: 18 QCASRLPLMENVIVAWKFCHVLHKILREGHPHVI-----KESIKQAQVITNVGKMWFHLK 72
C RLP V W+ + H++ S +G + K
Sbjct: 481 DCIIRLP------VKWE------TTTQFKATHILDFGPGGAS--------GLGVLTHRNK 520
Query: 73 DGYGKLIYQYTRLLL-GKLDFHRRNP----GF 99
DG G R+++ G LD NP GF
Sbjct: 521 DGTG------VRVIVAGTLD---INPDDDYGF 543
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase
phosphorylation site, alpha-helical bundle,
transcription factor, DNA-binding, nucleus; NMR {Mus
musculus} PDB: 2kmd_A*
Length = 110
Score = 24.6 bits (53), Expect = 9.2
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 85 LLLGKLDFHRRNPGFPGNLILSQSEL 110
LGK F P F G+++ E+
Sbjct: 78 CALGKECFLELAPDFVGDILWEHLEI 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.441
Gapped
Lambda K H
0.267 0.0464 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,318,407
Number of extensions: 130339
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 19
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.5 bits)