RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9626
         (145 letters)



>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 140

 Score = 54.2 bits (130), Expect = 7e-11
 Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 14/106 (13%)

Query: 4   ILGTFHDKSSTIFW-QCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESI------- 55
           +        S               N +V +K     H ++  G+   ++          
Sbjct: 27  VHCANEPNVSIPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLASSNSTFN 86

Query: 56  ------KQAQVITNVGKMWFHLKDGYGKLIYQYTRLLLGKLDFHRR 95
                 K       +G     +       I +Y + L  K   +R 
Sbjct: 87  LSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKSLSYRA 132


>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid
           leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 131

 Score = 52.6 bits (126), Expect = 2e-10
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 3/95 (3%)

Query: 4   ILGTFHDKSS-TIFWQCASRLPLMENVIVAWKFCHVLHKILREGHPHVIKESIKQAQVIT 62
           I  T     +               + +V +K     H ++  G+   I+    +  +  
Sbjct: 28  IQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFN 87

Query: 63  NVGKMWFHLKDG--YGKLIYQYTRLLLGKLDFHRR 95
               +      G      I +Y+R L  K   +R+
Sbjct: 88  LSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQ 122


>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 144

 Score = 27.2 bits (60), Expect = 0.57
 Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 1   MNAIL-GTFHDKSSTIFWQCASRLPLM--ENVIVAWKFCHVLHKILREGHPHVIKESIKQ 57
           M+ I   T++  + +       +      +N    +K   ++  +++ G   V ++  + 
Sbjct: 26  MSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKEN 85

Query: 58  AQVITNVGKMWFHLKDGYGKLIYQYTR 84
              +  +    F   D  GK      R
Sbjct: 86  MYAVQTLKD--FQYVDRDGKDQGVNVR 110


>d1sxea_ a.60.1.1 (A:) Transcriptional regulator ERG {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 97

 Score = 24.0 bits (52), Expect = 4.5
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 86  LLGKLDFHRRNPGFPGNLILSQSEL 110
            + K DF R  P +  +++LS    
Sbjct: 66  KMTKDDFQRLTPSYNADILLSHLHY 90


>d2jv3a_ a.60.1.1 (A:) Ets-1 transcription factor pointed domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 110

 Score = 24.0 bits (52), Expect = 5.1
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 86  LLGKLDFHRRNPGFPGNLILSQSEL 110
            LGK  F    P F G+++    E+
Sbjct: 79  ALGKECFLELAPDFVGDILWEHLEI 103


>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 116

 Score = 24.1 bits (51), Expect = 5.5
 Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 2/37 (5%)

Query: 50 VIKESI--KQAQVITNVGKMWFHLKDGYGKLIYQYTR 84
          V+K+    KQ     N     F L+     L Y    
Sbjct: 11 VVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPS 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.441 

Gapped
Lambda     K      H
   0.267   0.0632    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 579,139
Number of extensions: 25593
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 7
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.9 bits)