BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9627
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 85.5 bits (210), Expect = 8e-18, Method: Composition-based stats.
Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 8 MTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE 67
M K R +M+SAT+P+E+Q LA DFLD YI + +G + S + NI Q V E +K
Sbjct: 205 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKR 263
Query: 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125
+ L LLN ++ ++ T++F ETK+ D + + + G+A IHGD+SQ++R+ L
Sbjct: 264 SFLLDLLN--ATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 319
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 8 MTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE 67
+T +P+ Q LM+SAT+P E+Q++A +FL +Y+ + IG + A +++Q + ++ K
Sbjct: 231 VTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIG-IVGGACSDVKQTIYEVNKYAKR 289
Query: 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
+KL +L S+ + TI+F ETKR D + + + IHGD+ Q +R+ L+
Sbjct: 290 SKLIEIL----SEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALR 344
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 33/38 (86%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTL 48
+PDRQ LMWSATWP+EV++LAEDFL YI INIG+L L
Sbjct: 205 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALEL 242
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 45
+PDRQ LMWSATWP+EV++LAEDFL YI INIG+
Sbjct: 219 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 253
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 11/116 (9%)
Query: 13 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQ-VVEVCAEHEKENKLF 71
D+++L++SAT PRE+ LA+ + Y + N NI+Q VEV EN+ F
Sbjct: 178 DKRILLFSATXPREILNLAKKYXGDY-----SFIKAKINANIEQSYVEV-----NENERF 227
Query: 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKV 127
L + E ++F +TKR ++ +++ G+ A IHGD SQ +R+ V+++
Sbjct: 228 EALCRLLKNKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRL 283
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 71
P QV++ SAT P +V ++ F+ + ++I + L+ Q V V E K L
Sbjct: 193 PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLT 252
Query: 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
L + IS + +IF T+RKV+++T ++N + I+ D QQERD ++K
Sbjct: 253 DLYDSISV---TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMK 304
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 71
P QV++ SAT P EV ++ F+ I+I + L+ Q V V E K + L
Sbjct: 173 PATQVVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC 232
Query: 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
L + ++ + +IF TKRKVD +T+ ++ + +HGD Q+ER+ ++K
Sbjct: 233 DLYDTLTI---TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 284
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 71
P QV++ SAT P E+ ++ F+ I+I + L+ Q V V E K + L
Sbjct: 210 PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC 269
Query: 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
L + ++ + +IF TKRKVD +T+ ++ + +HGD Q+ER+ ++K
Sbjct: 270 DLYDTLTI---TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 321
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 71
P QV++ SAT P E+ ++ F+ I+I + L+ Q V V E K + L
Sbjct: 210 PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC 269
Query: 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
L + ++ + +IF TKRKVD +T+ ++ + +HGD Q+ER+ ++K
Sbjct: 270 DLYDTLTI---TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 321
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 71
P QV++ SAT P E+ ++ F+ I+I + L+ Q V V E K + L
Sbjct: 209 PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC 268
Query: 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
L + ++ + +IF TKRKVD +T+ ++ + +HGD Q+ER+ ++K
Sbjct: 269 DLYDTLTI---TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 320
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 71
P QV++ SAT P E+ ++ F+ I+I + L+ Q V V E K + L
Sbjct: 188 PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC 247
Query: 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
L + ++ + +IF TKRKVD +T+ ++ + +HGD Q+ER+ ++K
Sbjct: 248 DLYDTLTI---TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 299
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 71
P QV++ SAT P E+ ++ F+ I+I + L+ Q V V E K + L
Sbjct: 173 PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC 232
Query: 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
L + ++ + +IF TKRKVD +T+ ++ + +HGD Q+ER+ ++K
Sbjct: 233 DLYDTLTI---TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 284
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 13 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFG 72
++QV+M+SAT +E++ + F+ ++I + T H +QQ ++EK KLF
Sbjct: 184 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 243
Query: 73 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQER 121
LL+ + + N+ +IF ++ ++ + + + + A+ IH Q+ER
Sbjct: 244 LLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 289
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 52.4 bits (124), Expect = 6e-08, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 71
P QV++ SAT P +V ++ F + ++I + L+ Q V V E K L
Sbjct: 192 PTTQVVLLSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLT 251
Query: 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
L + IS + +IF T+RKV+++T ++N + I+ D QQERD + K
Sbjct: 252 DLYDSISV---TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXK 303
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 13 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFG 72
++QV+M+SAT +E++ + F+ ++I + T H +QQ ++EK KLF
Sbjct: 183 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 242
Query: 73 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQER 121
LL+ + + N+ +IF ++ ++ + + + + A+ IH Q+ER
Sbjct: 243 LLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 288
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 13 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFG 72
++QV+M+SAT +E++ + F+ ++I + T H +QQ ++EK KLF
Sbjct: 184 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 243
Query: 73 LLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQER 121
LL+ + + N+ +IF ++ ++ + + + + A+ IH Q+ER
Sbjct: 244 LLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 289
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLL 74
QV++ SAT P +V ++ + F+ I+I + L+ Q + V E K + L L
Sbjct: 216 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLY 275
Query: 75 NDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
++ + +IF T+RKVD +T+ + + +HGD Q+ERD +++
Sbjct: 276 ETLTI---TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMR 324
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLL 74
QV++ SAT P +V ++ + F+ I+I + L+ Q + V E K + L L
Sbjct: 190 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLY 249
Query: 75 NDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
++ + +IF T+RKVD +T+ + + +HGD Q+ERD +++
Sbjct: 250 ETLTI---TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMR 298
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 49 SANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA 108
S + NI Q V E +K + L LLN ++ ++ T++F ETK+ D + + + G+A
Sbjct: 15 STSENITQKVVWVEESDKRSFLLDLLN--ATGKDSLTLVFVETKKGADSLEDFLYHEGYA 72
Query: 109 AVGIHGDKSQQERDYVL 125
IHGD+SQ++R+ L
Sbjct: 73 CTSIHGDRSQRDREEAL 89
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 27/32 (84%)
Query: 13 DRQVLMWSATWPREVQKLAEDFLDSYIQINIG 44
+RQ LM+SAT+P+E+QKLA DFL +YI + +G
Sbjct: 209 NRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS-LTLSANHNIQQVVEVCAEHEKENKL 70
P Q L++SAT+P V++ L +IN+ LTL I Q E +K
Sbjct: 193 PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKG---ITQYYAFVEERQK---- 245
Query: 71 FGLLNDISSKDE-NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125
LN + SK + N+ IIF + +V+ + K I + G++ H QQER+ V
Sbjct: 246 LHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVF 301
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 65 EKENKLFGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDY 123
E+E + L D+ S + +IF T+RKV+++T ++N + I+ D QQERD
Sbjct: 12 EEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDT 71
Query: 124 VLK 126
++K
Sbjct: 72 IMK 74
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKEN---KLF 71
Q++++SAT+ V+K AE F + +I + + LS Q ++ +E K N +L+
Sbjct: 293 QIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELY 352
Query: 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL---KVG 128
GLL ++IIF + K ++I + + G + G+ +RD ++ +VG
Sbjct: 353 GLLTI------GQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVG 406
Query: 129 S 129
+
Sbjct: 407 T 407
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 44 GSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDI-SSKDENKTIIFAETKRKVDKITKSI 102
G T + H + QV E ENK F LL D+ +++ + IIF TK V+++T +
Sbjct: 4 GLTTRNIEHAVIQVRE-------ENK-FSLLKDVLMTENPDSCIIFCRTKEHVNQLTDEL 55
Query: 103 QNYGWAAVGIHGDKSQQER 121
+ G+ IHG Q++R
Sbjct: 56 DDLGYPCDKIHGGMIQEDR 74
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 6 RAMTYKP-DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANH-NIQQVVEVCAE 63
R + P D Q++++SAT+ V++ A+ + N +L L N N+ + ++ +
Sbjct: 169 RVKRFLPKDTQLVLFSATFADAVRQYAKKIVP-----NANTLELQTNEVNVDAIKQLYMD 223
Query: 64 HEKENKLFGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERD 122
+ E F +L ++ +IIF TK+ + + +++ G +HGD QERD
Sbjct: 224 CKNEADKFDVLTELYGVMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 283
Query: 123 YVL 125
++
Sbjct: 284 RLI 286
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 6 RAMTYKP-DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANH-NIQQVVEVCAE 63
R + P D Q++++SAT+ V++ A+ + N +L L N N+ + ++ +
Sbjct: 169 RVKRFLPKDTQLVLFSATFADAVRQYAKKIVP-----NANTLELQTNEVNVDAIKQLYMD 223
Query: 64 HEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERD 122
+ E F +L ++ +IIF TK+ + + +++ G +HGD QERD
Sbjct: 224 CKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 283
Query: 123 YVL 125
++
Sbjct: 284 RLI 286
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%)
Query: 63 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQER 121
E+ KE L + K +IFAE K VD I + + G AV IHG K Q+ER
Sbjct: 35 EYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEER 93
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 77 ISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125
++S D + ++F TK + ++I + + G A +HGD SQ ER+ VL
Sbjct: 28 VASPD--RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVL 74
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 77 ISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125
++S D + ++F TK + ++I + + G A +HGD SQ ER+ V+
Sbjct: 25 VASPD--RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVM 71
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFL 35
+PDRQ +M SATWP V++LA +L
Sbjct: 196 RPDRQTVMTSATWPDTVRQLALSYL 220
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 52 HNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVG 111
H +QQ ++EK KLF LL+ + N+ +IF ++ ++ + + + + A+
Sbjct: 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEF---NQVVIFVKSVQRCIALAQLLVEQNFPAIA 60
Query: 112 IHGDKSQQER 121
IH Q+ER
Sbjct: 61 IHRGMPQEER 70
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 29/113 (25%)
Query: 18 MWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVC-AEHEKENKLFGLLND 76
++SAT P E++K+ +DF+ +Y +I E C E+K + +D
Sbjct: 165 LFSATIPEEIRKVVKDFITNYEEI-----------------EACIGLANVEHKFVHVKDD 207
Query: 77 ISSK----DENK---TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERD 122
SK ENK I+F T+ +V K+ + N A+ + GD Q R+
Sbjct: 208 WRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFDN----AIELRGDLPQSVRN 256
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 74 LNDISSKDE-NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125
LN + S+ + N++IIF + ++V+ + K I G++ IH Q+ R+ V
Sbjct: 35 LNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVF 87
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 8 MTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQIN 42
+T +RQ+L++SAT+P VQK L+ +IN
Sbjct: 172 LTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINI 43
P RQ L++SAT P ++LAE ++ + + IN+
Sbjct: 173 PPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINI 43
P RQ L++SAT P ++LAE ++ + + IN+
Sbjct: 173 PPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 69 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125
+L+GL+ SS IIF TK+ + + +++ G +HGD QERD ++
Sbjct: 28 ELYGLMTIGSS------IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLI 78
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 69 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125
+L+GL SS IIF TK+ + + +++ G +HGD QERD ++
Sbjct: 30 ELYGLXTIGSS------IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLI 80
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 85 TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125
+IIF TK+ + + +++ G +HGD QERD ++
Sbjct: 39 SIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLI 79
>pdb|1T03|B Chain B, Hiv-1 Reverse Transcriptase Crosslinked To Tenofovir
Terminated Template-Primer (Complex P)
pdb|3JSM|B Chain B, K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To
Ds-Dna And Complexed With Tenofovir-Diphosphate As The
Incoming Nucleotide Substrate
pdb|3JYT|B Chain B, K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To
Ds- Dna And Complexed With Datp As The Incoming
Nucleotide Substrate
Length = 437
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|2YNF|B Chain B, Hiv-1 Reverse Transcriptase Y188l Mutant In Complex With
Inhibitor Gsk560
pdb|2YNG|B Chain B, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk560
pdb|2YNH|B Chain B, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk500
pdb|2YNI|B Chain B, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk952
Length = 447
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 50 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 94
>pdb|1T05|B Chain B, Hiv-1 Reverse Transcriptase Crosslinked To Template-Primer
With Tenofovir-Diphosphate Bound As The Incoming
Nucleotide Substrate
Length = 437
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|3KLE|B Chain B, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|F Chain F, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|J Chain J, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|N Chain N, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLG|B Chain B, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
pdb|3KLG|F Chain F, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
pdb|3KLH|B Chain B, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Post-Translocation
Aztmp-Terminated Dna (Complex P)
pdb|3KLI|B Chain B, Crystal Structure Of Unliganded Azt-Resistant Hiv-1
Reverse Transcriptase
Length = 437
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|4I7G|B Chain B, Hiv-1 Reverse Transcriptase With Bound Fragment At Nnrti
Adjacent Site
pdb|4ICL|B Chain B, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Incoming Dntp Binding Site
pdb|4ID5|B Chain B, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Rnase H Primer Grip Site
pdb|4IDK|B Chain B, Hiv-1 Reverse Transcriptase With Bound Fragment At The 428
Site
pdb|4IFV|B Chain B, Detecting Allosteric Sites Of Hiv-1 Reverse Transcriptase
By X-ray Crystallographic Fragment Screening
pdb|4IFY|B Chain B, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Knuckles Site
pdb|4IG0|B Chain B, Hiv-1 Reverse Transcriptase With Bound Fragment At The 507
Site
pdb|4IG3|B Chain B, Hiv-1 Reverse Transcriptase With Bound Fragment Near
Knuckles Site
Length = 429
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 32 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 76
>pdb|3KLF|B Chain B, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|F Chain F, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|J Chain J, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|N Chain N, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
Length = 444
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 47 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 91
>pdb|3KJV|B Chain B, Hiv-1 Reverse Transcriptase In Complex With Dna
pdb|3KK1|B Chain B, Hiv-1 Reverse Transcriptase-Dna Complex With Nuceotide
Inhibitor Gs- 9148-Diphosphate Bound In Nucleotide Site
pdb|3KK2|B Chain B, Hiv-1 Reverse Transcriptase-Dna Complex With Datp Bound In
The Nucleotide Binding Site
pdb|3KK3|B Chain B, Hiv-1 Reverse Transcriptase-Dna Complex With Gs-9148
Terminated Primer
Length = 452
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 43 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 87
>pdb|4B3P|B Chain B, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A
Unique Rt Conformation And Substrate Interface
pdb|4B3Q|B Chain B, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A
Unique Rt Conformation And Substrate Interface
Length = 454
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 41 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 80
>pdb|1R0A|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase
Covalently Tethered To Dna Template-primer Solved To 2.8
Angstroms
pdb|2I5J|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Dhbnh, An Rnase H Inhibitor
Length = 429
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|2HMI|B Chain B, Hiv-1 Reverse TranscriptaseFRAGMENT OF FAB 28DNA COMPLEX
pdb|1BQM|B Chain B, Hiv-1 RtHBY 097
pdb|1N5Y|B Chain B, Hiv-1 Reverse Transcriptase Crosslinked To Post-
Translocation Aztmp-Terminated Dna (Complex P)
pdb|1N6Q|B Chain B, Hiv-1 Reverse Transcriptase Crosslinked To Pre-
Translocation Aztmp-Terminated Dna (Complex N)
pdb|1S6P|B Chain B, Crystal Structure Of Human Immunodeficiency Virus Type 1
Reverse Transcriptase (Rt) In Complex With
Janssen-R100943
pdb|1S6Q|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R147681
pdb|1S9E|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R129385
pdb|1S9G|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R120394.
pdb|1SUQ|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R185545
pdb|2B6A|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Thr-50
pdb|2B5J|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R165481
pdb|2BAN|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R157208
pdb|2BE2|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With R221239
Length = 430
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|2HND|B Chain B, Crystal Structure Of K101e Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 422
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 25 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 69
>pdb|2HNY|B Chain B, Crystal Structure Of E138k Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|2HNZ|B Chain B, Crystal Structure Of E138k Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 422
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 25 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 69
>pdb|1HNI|B Chain B, Structure Of Hiv-1 Reverse Transcriptase In A Complex With
The Nonnucleoside Inhibitor Alpha-Apa R 95845 At 2.8
Angstroms Resolution
Length = 427
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|3IRX|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With The Non-Nucleoside Rt Inhibitor
(E)-S-Methyl
5-(1-(3,7-Dimethyl-2-Oxo-2,
3-Dihydrobenzo[d]oxazol-5-Yl)-5-
(5-Methyl-1,3,
4-Oxadiazol-2-Yl)pent-1-Enyl)-2-Methoxy-3-
Methylbenzothioate.
pdb|3IS9|A Chain A, Crystal Structure Of The Hiv-1 Reverse Transcriptase
(Rt) In Complex With The Alkenyldiarylmethane (Adam)
Non-Nucleoside Rt Inhibitor Dimethyl
3,3'-(6-Methoxy-6-Oxohex-1-Ene-1,1-
Diyl)bis(5-Cyano-6-Methoxybenzoate)
Length = 558
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 34 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 69
>pdb|1LW0|B Chain B, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1LW2|B Chain B, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With 1051u91
Length = 440
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 27 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1J5O|B Chain B, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
Length = 430
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1HPZ|B Chain B, Human Immunodeficiency Virus Type 1
pdb|1HQE|B Chain B, Human Immunodeficiency Virus Type 1
pdb|1HQU|B Chain B, Human Immunodeficiency Virus Type 1
pdb|1SV5|B Chain B, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase (Rt) In Complex With Janssen-R165335
Length = 430
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|3DLK|B Chain B, Crystal Structure Of An Engineered Form Of The Hiv-1
Reverse Transcriptase, Rt69a
pdb|3QLH|B Chain B, Hiv-1 Reverse Transcriptase In Complex With Manicol At The
Rnase H Active Site And Tmc278 (rilpivirine) At The
Nnrti Binding Pocket
Length = 423
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 26 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 70
>pdb|2ZD1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Tmc278 (Rilpivirine), A Non-Nucleoside Rt
Inhibitor
pdb|4H4M|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With (E)-
3-(3-Chloro-5-(4-Chloro-2-(2-(2,4-Dioxo-3,4-
Dihydropyrimidin-1(2h)-
Yl)ethoxy)phenoxy)phenyl)acrylonitrile (Jlj494), A
Non-Nucleoside Inhibitor
pdb|4H4O|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With
(E)-3-(3-(2-(2-(2,4-Dioxo-3,
4-Dihydropyrimidin-1(2h)-Yl)ethoxy)- 4-
Fluorophenoxy)-5-Fluorophenyl)acrylonitrile (Jlj506), A
Non- Nucleoside Inhibitor
pdb|4I2P|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Rilpivirine (tmc278) Based Analogue
pdb|4G1Q|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (rt) In
Complex With Rilpivirine (tmc278, Edurant), A
Non-nucleoside Rt-inhibiting Drug
pdb|4I7G|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At Nnrti
Adjacent Site
pdb|4ICL|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Incoming Dntp Binding Site
pdb|4ID5|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Rnase H Primer Grip Site
pdb|4IDK|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The
428 Site
pdb|4IFV|A Chain A, Detecting Allosteric Sites Of Hiv-1 Reverse
Transcriptase By X-ray Crystallographic Fragment
Screening
pdb|4IFY|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Knuckles Site
pdb|4IG0|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The
507 Site
pdb|4IG3|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment Near
Knuckles Site
Length = 557
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 33 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 68
>pdb|4B3O|B Chain B, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A
Unique Rt Conformation And Substrate Interface
Length = 441
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 28 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 67
>pdb|1IKV|B Chain B, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
Efivarenz
pdb|1IKX|B Chain B, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
The Inhibitor Pnu142721
pdb|1IKY|B Chain B, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc194
Length = 427
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|3FFI|B Chain B, Hiv-1 Rt With Pyridone Non-Nucleoside Inhibitor
Length = 441
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 28 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 76
>pdb|1HNV|B Chain B, Structure Of Hiv-1 Rt(Slash)tibo R 86183 Complex Reveals
Similarity In The Binding Of Diverse Nonnucleoside
Inhibitors
pdb|1DLO|B Chain B, Human Immunodeficiency Virus Type 1
pdb|1TVR|B Chain B, Hiv-1 Rt9-Cl Tibo
pdb|4DG1|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Polymorphism Mutation K172a And K173a
Length = 427
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1S1W|B Chain B, Crystal Structure Of V106a Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 440
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 27 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1RTH|B Chain B, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1RTI|B Chain B, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1RTJ|B Chain B, Mechanism Of Inhibition Of Hiv-1 Reverse Transcriptase By
Non-Nucleoside Inhibitors
pdb|1VRT|B Chain B, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1VRU|B Chain B, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1REV|B Chain B, Hiv-1 Reverse Transcriptase
pdb|1RT2|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Tnk-651
pdb|1RT1|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Mkc-442
pdb|1KLM|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Bhap U-90152
pdb|1RT4|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Uc781
pdb|1RT5|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Uc10
pdb|1RT6|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Uc38
pdb|1RT7|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Uc84
pdb|1RTD|B Chain B, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
pdb|1RTD|D Chain D, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
pdb|1DTT|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-2 (Pett130a94)
pdb|1DTQ|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-1 (Pett131a94)
pdb|1C1C|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Tnk-6123
pdb|1C0T|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+21.1326
pdb|1C0U|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+50.0934
pdb|1EP4|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With S-1153
pdb|1FK9|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Dmp- 266(Efavirenz)
pdb|1JLQ|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With 739w94
pdb|1TKT|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw426318
pdb|1TKX|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw490745
pdb|1TKZ|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw429576
pdb|1TL1|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw451211
pdb|1TL3|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw450557
pdb|2RKI|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Triazole Derived Nnrti
pdb|3DLE|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gf128590.
pdb|3DLG|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw564511.
pdb|3DOL|B Chain B, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw695634.
pdb|3DI6|B Chain B, Hiv-1 Rt With Pyridazinone Non-Nucleoside Inhibitor
pdb|3DYA|B Chain B, Hiv-1 Rt With Non-Nucleoside Inhibitor Annulated Pyrazole
1
pdb|3E01|B Chain B, Hiv-Rt With Non-Nucleoside Inhibitor Annulated Pyrazole 2
pdb|3MEC|B Chain B, Hiv-1 Reverse Transcriptase In Complex With Tmc125
pdb|3MEE|B Chain B, Hiv-1 Reverse Transcriptase In Complex With Tmc278
pdb|3M8P|B Chain B, Hiv-1 Rt With Nnrti Tmc-125
pdb|3M8Q|B Chain B, Hiv-1 Rt With Aminopyrimidine Nnrti
pdb|2WON|B Chain B, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (Wild-Type).
pdb|3NBP|B Chain B, Hiv-1 Reverse Transcriptase With Aminopyrimidine Inhibitor
2
pdb|3QIP|B Chain B, Structure Of Hiv-1 Reverse Transcriptase In Complex With
An Rnase H Inhibitor And Nevirapine
pdb|4I7F|B Chain B, Hiv-1 Reverse Transcriptase In Complex With A Phosphonate
Analog Of Nevirapine
Length = 440
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 27 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1BQN|B Chain B, Tyr 188 Leu Hiv-1 RtHBY 097
Length = 430
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1LWC|B Chain B, Crystal Structure Of M184v Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 440
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 27 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1HMV|B Chain B, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1TV6|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Cp-94,707
pdb|1HMV|D Chain D, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1HMV|F Chain F, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1HMV|H Chain H, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
Length = 440
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 27 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1S1X|B Chain B, Crystal Structure Of V108i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 440
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 27 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1HVU|B Chain B, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|E Chain E, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|H Chain H, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|K Chain K, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
Length = 423
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 27 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 71
>pdb|2ZD1|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Tmc278 (Rilpivirine), A Non-Nucleoside Rt
Inhibitor
pdb|2ZE2|B Chain B, Crystal Structure Of L100iK103N MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Tmc278 (Rilpivirine),
A Non-Nucleoside Rt Inhibitor
pdb|3BGR|B Chain B, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Tmc278 (Rilpivirine),
A Non-Nucleoside Rt Inhibitor
pdb|3IG1|B Chain B, Hiv-1 Reverse Transcriptase With The Inhibitor Beta-
Thujaplicinol Bound At The Rnase H Active Site
pdb|3IRX|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With The Non-Nucleoside Rt Inhibitor
(E)-S-Methyl
5-(1-(3,7-Dimethyl-2-Oxo-2,
3-Dihydrobenzo[d]oxazol-5-Yl)-5-
(5-Methyl-1,3,4-Oxadiazol-2-Yl)pent-1-Enyl)-2-Methoxy-3-
Methylbenzothioate.
pdb|3IS9|B Chain B, Crystal Structure Of The Hiv-1 Reverse Transcriptase (Rt)
In Complex With The Alkenyldiarylmethane (Adam)
Non-Nucleoside Rt Inhibitor Dimethyl
3,3'-(6-Methoxy-6-Oxohex-1-Ene-1,1-
Diyl)bis(5-Cyano-6-Methoxybenzoate).
pdb|3QO9|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Tsao-T, A Non-Nucleoside Rt Inhibitor
(Nnrti)
pdb|2YKM|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Difluoromethylbenzoxazole (Dfmb)
Pyrimidine Thioether Derivative, A Non-Nucleoside Rt
Inhibitor (Nnrti)
pdb|2YKN|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Difluoromethylbenzoxazole (Dfmb)
Pyrimidine Thioether Derivative, A Non-Nucleoside Rt
Inhibitor (Nnrti)
pdb|3V4I|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And Azttp
pdb|3V4I|D Chain D, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And Azttp
pdb|3V6D|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
Cross-Linked With Azt-Terminated Dna
pdb|3V6D|D Chain D, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
Cross-Linked With Azt-Terminated Dna
pdb|3V81|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And The Nonnucleoside Inhibitor Nevirapine
pdb|3V81|D Chain D, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And The Nonnucleoside Inhibitor Nevirapine
pdb|4H4M|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With (E)-
3-(3-Chloro-5-(4-Chloro-2-(2-(2,4-Dioxo-3,4-
Dihydropyrimidin-1(2h)-
Yl)ethoxy)phenoxy)phenyl)acrylonitrile (Jlj494), A
Non-Nucleoside Inhibitor
pdb|4H4O|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With
(E)-3-(3-(2-(2-(2,4-Dioxo-3,
4-Dihydropyrimidin-1(2h)-Yl)ethoxy)- 4-
Fluorophenoxy)-5-Fluorophenyl)acrylonitrile (Jlj506), A
Non- Nucleoside Inhibitor
pdb|4I2P|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Rilpivirine (tmc278) Based Analogue
pdb|4I2Q|B Chain B, Crystal Structure Of K103n/y181c Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Rilpivirine (tmc278)
Analogue
pdb|4G1Q|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (rt) In
Complex With Rilpivirine (tmc278, Edurant), A
Non-nucleoside Rt-inhibiting Drug
Length = 428
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|3HVT|B Chain B, Structural Basis Of Asymmetry In The Human
Immunodeficiency Virus Type 1 Reverse Transcriptase
Heterodimer
pdb|2VG5|B Chain B, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
pdb|2VG6|B Chain B, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
pdb|2VG7|B Chain B, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
Length = 428
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1QE1|B Chain B, Crystal Structure Of 3tc-Resistant M184i Mutant Of Hiv-1
Reverse Transcriptase
Length = 427
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1FKO|B Chain B, Crystal Structure Of Nnrti Resistant K103n Mutant Hiv-1
Reverse Transcriptase In Complex With Dmp-266(Efavirenz)
pdb|1FKP|B Chain B, Crystal Structure Of Nnrti Resistant K103n Mutant Hiv-1
Reverse Transcriptase In Complex With Nevirapine
pdb|3DM2|B Chain B, Crystal Structure Of Hiv-1 K103n Mutant Reverse
Transcriptase In Complex With Gw564511.
pdb|3DOK|B Chain B, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw678248.
pdb|3MED|B Chain B, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc125
pdb|3MEG|B Chain B, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc278
pdb|2WOM|B Chain B, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (K103n)
Length = 440
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1S1T|B Chain B, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
pdb|1S1U|B Chain B, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1S1V|B Chain B, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
Length = 440
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 27 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1JKH|B Chain B, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Dmp-266(Efavirenz)
pdb|1JLA|B Chain B, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|1JLB|B Chain B, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1JLC|B Chain B, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 440
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 27 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1EET|B Chain B, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc204
pdb|1IKW|B Chain B, Wild Type Hiv-1 Reverse Transcriptase In Complex With
Efavirenz
pdb|3ISN|D Chain D, Crystal Structure Of Hiv-1 Rt Bound To A 6-Vinylpyrimidine
Inhibitor
pdb|3ITH|B Chain B, Crystal Structure Of The Hiv-1 Reverse Transcriptase Bound
To A 6-Vinylpyrimidine Inhibitor
pdb|3ITH|D Chain D, Crystal Structure Of The Hiv-1 Reverse Transcriptase Bound
To A 6-Vinylpyrimidine Inhibitor
Length = 427
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|3QLH|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Manicol At
The Rnase H Active Site And Tmc278 (rilpivirine) At The
Nnrti Binding Pocket
Length = 555
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 32 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 67
>pdb|3DRS|B Chain B, Hiv Reverse Transcriptase K103n Mutant In Complex With
Inhibitor R8d
pdb|3LP0|B Chain B, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3LP1|B Chain B, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3LP2|B Chain B, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3TAM|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M06
Length = 443
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 34 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 78
>pdb|1JLE|B Chain B, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase
pdb|1JLF|B Chain B, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1JLG|B Chain B, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 440
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 27 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1C1B|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gca-186
Length = 440
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|3DMJ|B Chain B, Crystal Structure Of Hiv-1 V106a And Y181c Mutant Reverse
Transcriptase In Complex With Gw564511
Length = 440
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 27 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|3DM2|A Chain A, Crystal Structure Of Hiv-1 K103n Mutant Reverse
Transcriptase In Complex With Gw564511.
pdb|3DOK|A Chain A, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw678248
Length = 560
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|2RF2|B Chain B, Hiv Reverse Transcriptase In Complex With Inhibitor 7e
(Nnrti)
pdb|3C6T|B Chain B, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 14
pdb|3C6U|B Chain B, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 22
pdb|3DRP|B Chain B, Hiv Reverse Transcriptase In Complex With Inhibitor R8e
pdb|3I0R|B Chain B, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 3
pdb|3I0S|B Chain B, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 7
Length = 443
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 34 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 78
>pdb|2OPQ|B Chain B, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw420867x
Length = 424
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 27 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 71
>pdb|3QO9|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Tsao-T, A Non-Nucleoside Rt Inhibitor
(Nnrti)
Length = 557
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 33 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 68
>pdb|2ZE2|A Chain A, Crystal Structure Of L100iK103N MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Tmc278
(Rilpivirine), A Non-Nucleoside Rt Inhibitor
Length = 557
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 33 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 68
>pdb|2IAJ|B Chain B, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Atp
pdb|2IC3|B Chain B, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Nonnucleoside
Inhibitor Hby 097
Length = 447
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|4B3P|A Chain A, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A
Unique Rt Conformation And Substrate Interface
Length = 560
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1EET|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The
Inhibitor Msc204
Length = 557
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1RT3|B Chain B, Azt Drug Resistant Hiv-1 Reverse Transcriptase Complexed
With 1051u91
Length = 440
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1UWB|B Chain B, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo
Length = 427
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|1FKO|A Chain A, Crystal Structure Of Nnrti Resistant K103n Mutant Hiv-1
Reverse Transcriptase In Complex With
Dmp-266(Efavirenz)
pdb|1FKP|A Chain A, Crystal Structure Of Nnrti Resistant K103n Mutant Hiv-1
Reverse Transcriptase In Complex With Nevirapine
Length = 543
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|3KLF|A Chain A, Crystal Structure Of Wild-Type Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLF|E Chain E, Crystal Structure Of Wild-Type Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLF|I Chain I, Crystal Structure Of Wild-Type Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLF|M Chain M, Crystal Structure Of Wild-Type Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
Length = 557
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 33 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 68
>pdb|3JSM|A Chain A, K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To
Ds-Dna And Complexed With Tenofovir-Diphosphate As The
Incoming Nucleotide Substrate
pdb|3JYT|A Chain A, K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To
Ds- Dna And Complexed With Datp As The Incoming
Nucleotide Substrate
Length = 558
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRK 94
I+ +VE+C E EKE K ++ I ++ T +FA KRK
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFA-IKRK 66
>pdb|3DLK|A Chain A, Crystal Structure Of An Engineered Form Of The Hiv-1
Reverse Transcriptase, Rt69a
Length = 556
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 32 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 67
>pdb|3BGR|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Tmc278
(Rilpivirine), A Non-Nucleoside Rt Inhibitor
pdb|4I2Q|A Chain A, Crystal Structure Of K103n/y181c Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Rilpivirine (tmc278)
Analogue
Length = 557
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 33 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 68
>pdb|2OPR|B Chain B, Crystal Structure Of K101e Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw420867x
Length = 426
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 26 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 70
>pdb|1DLO|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1BQM|A Chain A, Hiv-1 RtHBY 097
Length = 556
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1BQN|A Chain A, Tyr 188 Leu Hiv-1 RtHBY 097
Length = 558
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1LW0|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1LW2|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With 1051u91
Length = 560
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1S6P|A Chain A, Crystal Structure Of Human Immunodeficiency Virus Type 1
Reverse Transcriptase (Rt) In Complex With
Janssen-R100943
pdb|1S6Q|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R147681
pdb|1S9E|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R129385
pdb|1S9G|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R120394.
pdb|1SUQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R185545
pdb|2B6A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Thr-50
pdb|2B5J|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R165481
pdb|2BAN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R157208
pdb|2BE2|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With R221239
Length = 560
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1RT3|A Chain A, Azt Drug Resistant Hiv-1 Reverse Transcriptase Complexed
With 1051u91
Length = 560
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|3MED|A Chain A, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc125
pdb|3MEG|A Chain A, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc278
pdb|2WOM|A Chain A, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (K103n)
Length = 560
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|3IG1|A Chain A, Hiv-1 Reverse Transcriptase With The Inhibitor Beta-
Thujaplicinol Bound At The Rnase H Active Site
Length = 555
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|2VG5|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
pdb|2VG6|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
pdb|2VG7|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
Length = 557
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|2OPP|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw420867x
Length = 427
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 23 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 71
>pdb|3HVT|A Chain A, Structural Basis Of Asymmetry In The Human
Immunodeficiency Virus Type 1 Reverse Transcriptase
Heterodimer
Length = 556
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1HPZ|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1HQE|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1HQU|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1SV5|A Chain A, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase (Rt) In Complex With Janssen-R165335
Length = 560
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|4B3Q|A Chain A, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A
Unique Rt Conformation And Substrate Interface
Length = 560
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1S1W|A Chain A, Crystal Structure Of V106a Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 560
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1HNI|A Chain A, Structure Of Hiv-1 Reverse Transcriptase In A Complex
With The Nonnucleoside Inhibitor Alpha-Apa R 95845 At
2.8 Angstroms Resolution
pdb|1HNV|A Chain A, Structure Of Hiv-1 Rt(Slash)tibo R 86183 Complex Reveals
Similarity In The Binding Of Diverse Nonnucleoside
Inhibitors
pdb|1TVR|A Chain A, Hiv-1 Rt9-Cl Tibo
pdb|2HMI|A Chain A, Hiv-1 Reverse TranscriptaseFRAGMENT OF FAB 28DNA COMPLEX
Length = 558
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1HYS|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
Length = 425
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1HYS|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
Length = 553
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|3DRS|A Chain A, Hiv Reverse Transcriptase K103n Mutant In Complex With
Inhibitor R8d
pdb|3LP0|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3LP1|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3LP2|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3T1A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M05
pdb|3T1A|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M05
pdb|3TAM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M06
Length = 563
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 34 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 69
>pdb|1REV|A Chain A, Hiv-1 Reverse Transcriptase
pdb|1RT2|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase
Complexed With Tnk-651
pdb|1RT1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase
Complexed With Mkc-442
pdb|1KLM|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Bhap U-90152
pdb|1RT4|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc781
pdb|1RT5|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc10
pdb|1RT6|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc38
pdb|1RT7|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc84
pdb|1DTT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-2 (Pett130a94)
pdb|1DTQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-1 (Pett131a94)
pdb|1C1B|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gca-186
pdb|1C1C|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Tnk-6123
pdb|1C0T|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+21.1326
pdb|1C0U|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+50.0934
pdb|1EP4|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With S-1153
pdb|1JLQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With 739w94
pdb|1TKT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw426318
pdb|1TKX|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw490745
pdb|1TKZ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw429576
pdb|1TL1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw451211
pdb|1TL3|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw450557
pdb|3DLE|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gf128590.
pdb|3DLG|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw564511.
pdb|1RTJ|A Chain A, Mechanism Of Inhibition Of Hiv-1 Reverse Transcriptase
By Non-Nucleoside Inhibitors
pdb|1RTI|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1VRT|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1RTH|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1VRU|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
Length = 560
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1LWC|A Chain A, Crystal Structure Of M184v Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|4B3O|A Chain A, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A
Unique Rt Conformation And Substrate Interface
Length = 560
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1S1T|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
pdb|1S1U|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1S1V|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|3DOL|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw695634
Length = 560
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1S1X|A Chain A, Crystal Structure Of V108i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1FK9|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Dmp- 266(Efavirenz)
Length = 543
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|4DG1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
With Polymorphism Mutation K172a And K173a
Length = 549
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|2YKN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Difluoromethylbenzoxazole (Dfmb)
Pyrimidine Thioether Derivative, A Non-Nucleoside Rt
Inhibitor (Nnrti)
Length = 562
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYSTPVFAIKKK 66
>pdb|3KJV|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Dna
pdb|3KK1|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Nuceotide
Inhibitor Gs- 9148-Diphosphate Bound In Nucleotide Site
pdb|3KK2|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Datp Bound
In The Nucleotide Binding Site
pdb|3KK3|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Gs-9148
Terminated Primer
Length = 560
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|3DRR|B Chain B, Hiv Reverse Transcriptase Y181c Mutant In Complex With
Inhibitor R8e
Length = 443
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 34 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 78
>pdb|2YNF|A Chain A, Hiv-1 Reverse Transcriptase Y188l Mutant In Complex With
Inhibitor Gsk560
Length = 563
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 34 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 69
>pdb|1JLE|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase
pdb|1JLG|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 560
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1QE1|A Chain A, Crystal Structure Of 3tc-Resistant M184i Mutant Of Hiv-1
Reverse Transcriptase
pdb|1J5O|A Chain A, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
Length = 558
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|2RF2|A Chain A, Hiv Reverse Transcriptase In Complex With Inhibitor 7e
(Nnrti)
pdb|3C6T|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In
Complex With Inhibitor 14
pdb|3C6U|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In
Complex With Inhibitor 22
pdb|3DRP|A Chain A, Hiv Reverse Transcriptase In Complex With Inhibitor R8e
pdb|3I0R|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In
Complex With Inhibitor 3
pdb|3I0S|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In
Complex With Inhibitor 7
pdb|3T19|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Wild
Type) In Complex With Inhibitor M05
pdb|3T19|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Wild
Type) In Complex With Inhibitor M05
pdb|2YNG|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk560
pdb|2YNH|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk500
pdb|2YNI|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk952
Length = 563
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 34 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 69
>pdb|3V4I|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
With Dna And Azttp
pdb|3V4I|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
With Dna And Azttp
pdb|3V6D|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
Cross-Linked With Azt-Terminated Dna
pdb|3V6D|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
Cross-Linked With Azt-Terminated Dna
pdb|3V81|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
With Dna And The Nonnucleoside Inhibitor Nevirapine
pdb|3V81|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
With Dna And The Nonnucleoside Inhibitor Nevirapine
Length = 556
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 33 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 68
>pdb|2JLE|A Chain A, Novel Indazole Nnrtis Created Using Molecular Template
Hybridization Based On Crystallographic Overlays
pdb|2JLE|B Chain B, Novel Indazole Nnrtis Created Using Molecular Template
Hybridization Based On Crystallographic Overlays
Length = 566
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|3DI6|A Chain A, Hiv-1 Rt With Pyridazinone Non-Nucleoside Inhibitor
pdb|3DYA|A Chain A, Hiv-1 Rt With Non-Nucleoside Inhibitor Annulated
Pyrazole 1
pdb|3E01|A Chain A, Hiv-Rt With Non-Nucleoside Inhibitor Annulated Pyrazole
2
pdb|3M8P|A Chain A, Hiv-1 Rt With Nnrti Tmc-125
pdb|3M8Q|A Chain A, Hiv-1 Rt With Aminopyrimidine Nnrti
pdb|3NBP|A Chain A, Hiv-1 Reverse Transcriptase With Aminopyrimidine
Inhibitor 2
Length = 561
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|3DMJ|A Chain A, Crystal Structure Of Hiv-1 V106a And Y181c Mutant
Reverse Transcriptase In Complex With Gw564511
Length = 560
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|2OPS|B Chain B, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw420867x
Length = 435
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 22 TEEKIKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 70
>pdb|1N5Y|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Post-
Translocation Aztmp-Terminated Dna (Complex P)
pdb|1N6Q|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Pre-
Translocation Aztmp-Terminated Dna (Complex N)
pdb|1T03|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Tenofovir
Terminated Template-Primer (Complex P)
pdb|1T05|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To
Template-Primer With Tenofovir-Diphosphate Bound As The
Incoming Nucleotide Substrate
pdb|1R0A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase
Covalently Tethered To Dna Template-primer Solved To
2.8 Angstroms
Length = 558
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1JKH|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Dmp-266(Efavirenz)
pdb|1JLA|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|1JLB|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1JLC|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 560
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|3FFI|A Chain A, Hiv-1 Rt With Pyridone Non-Nucleoside Inhibitor
Length = 561
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 32 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 67
>pdb|2I5J|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Dhbnh, An Rnase H Inhibitor
Length = 552
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|2RKI|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Triazole Derived Nnrti
pdb|3LAK|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Heterocycle Pyrimidinedione
Non-Nucleoside Inhibitor
pdb|3LAK|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Heterocycle Pyrimidinedione
Non-Nucleoside Inhibitor
pdb|3LAL|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Ethyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAL|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Ethyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Propyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAM|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Propyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Butyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAN|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Butyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3MEC|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Tmc125
pdb|3MEE|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Tmc278
pdb|2WON|A Chain A, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (Wild-Type).
pdb|3QIP|A Chain A, Structure Of Hiv-1 Reverse Transcriptase In Complex With
An Rnase H Inhibitor And Nevirapine
pdb|4I7F|A Chain A, Hiv-1 Reverse Transcriptase In Complex With A
Phosphonate Analog Of Nevirapine
Length = 560
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1IKV|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
Efivarenz
pdb|1IKX|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
The Inhibitor Pnu142721
pdb|1IKY|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The
Inhibitor Msc194
Length = 560
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1JLF|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1UWB|A Chain A, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo
Length = 558
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|2YKM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Difluoromethylbenzoxazole (Dfmb)
Pyrimidine Thioether Derivative, A Non-Nucleoside Rt
Inhibitor (Nnrti)
Length = 562
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYSTPVFAIKKK 66
>pdb|2OPP|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw420867x
Length = 542
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 28 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 63
>pdb|2OPR|A Chain A, Crystal Structure Of K101e Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw420867x
Length = 547
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 30 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 65
>pdb|2IAJ|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Atp
pdb|2IC3|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Nonnucleoside
Inhibitor Hby 097
Length = 560
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1IKW|A Chain A, Wild Type Hiv-1 Reverse Transcriptase In Complex With
Efavirenz
pdb|3ISN|C Chain C, Crystal Structure Of Hiv-1 Rt Bound To A
6-Vinylpyrimidine Inhibitor
pdb|3ITH|A Chain A, Crystal Structure Of The Hiv-1 Reverse Transcriptase
Bound To A 6-Vinylpyrimidine Inhibitor
pdb|3ITH|C Chain C, Crystal Structure Of The Hiv-1 Reverse Transcriptase
Bound To A 6-Vinylpyrimidine Inhibitor
Length = 560
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1HMV|A Chain A, The Structure Of Unliganded Reverse Transcriptase From
The Human Immunodeficiency Virus Type 1
pdb|1TV6|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Cp-94,707
pdb|1HMV|C Chain C, The Structure Of Unliganded Reverse Transcriptase From
The Human Immunodeficiency Virus Type 1
pdb|1HMV|E Chain E, The Structure Of Unliganded Reverse Transcriptase From
The Human Immunodeficiency Virus Type 1
pdb|1HMV|G Chain G, The Structure Of Unliganded Reverse Transcriptase From
The Human Immunodeficiency Virus Type 1
Length = 560
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|3DRR|A Chain A, Hiv Reverse Transcriptase Y181c Mutant In Complex With
Inhibitor R8e
Length = 563
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 34 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 69
>pdb|2HNY|A Chain A, Crystal Structure Of E138k Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|2HNZ|A Chain A, Crystal Structure Of E138k Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 534
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 28 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 63
>pdb|1HVU|A Chain A, Human Immunodeficiency Virus Type 1 Reverse
Transcriptase Complexed With A 33-Base Nucleotide Rna
Pseudoknot
pdb|1HVU|D Chain D, Human Immunodeficiency Virus Type 1 Reverse
Transcriptase Complexed With A 33-Base Nucleotide Rna
Pseudoknot
pdb|1HVU|G Chain G, Human Immunodeficiency Virus Type 1 Reverse
Transcriptase Complexed With A 33-Base Nucleotide Rna
Pseudoknot
pdb|1HVU|J Chain J, Human Immunodeficiency Virus Type 1 Reverse
Transcriptase Complexed With A 33-Base Nucleotide Rna
Pseudoknot
Length = 554
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|2OPQ|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw420867x
Length = 534
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 28 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 63
>pdb|2HND|A Chain A, Crystal Structure Of K101e Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 534
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 28 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 63
>pdb|2OPS|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw420867x
Length = 542
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 30 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 65
>pdb|1RTD|A Chain A, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
pdb|1RTD|C Chain C, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
Length = 554
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1LWE|B Chain B, Crystal Structure Of M41lT215Y MUTANT HIV-1 Reverse
Transcriptase (Rtmn) In Complex With Nevirapine
Length = 440
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 50 ANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K +
Sbjct: 27 TEEKIKALVEICTELEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRKLV 75
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 10 YKPDRQVLMWSATWPREVQKLAEDFLDSYI 39
Y PDR V ++ ATW + QK LD ++
Sbjct: 20 YFPDRNVALFVATWNMQGQKELPPSLDEFL 49
>pdb|1LWE|A Chain A, Crystal Structure Of M41lT215Y MUTANT HIV-1 Reverse
Transcriptase (Rtmn) In Complex With Nevirapine
Length = 560
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTELEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|3KLH|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Post-Translocation
Aztmp-Terminated Dna (Complex P)
Length = 564
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 33 IKALVEICTELEKEGK----ISKIGPENPYNTPVFAIKKK 68
>pdb|1LWF|A Chain A, Crystal Structure Of A Mutant Hiv-1 Reverse
Transcriptase (rtmq+m184v: M41l/d67n/k70r/m184v/t215y)
In Complex With Nevirapine
Length = 560
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTELEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|1LWF|B Chain B, Crystal Structure Of A Mutant Hiv-1 Reverse
Transcriptase (rtmq+m184v: M41l/d67n/k70r/m184v/t215y)
In Complex With Nevirapine
Length = 440
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 31 IKALVEICTELEKEGK----ISKIGPENPYNTPVFAIKKK 66
>pdb|3KLE|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|E Chain E, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|I Chain I, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|M Chain M, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLG|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
pdb|3KLG|E Chain E, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
pdb|3KLI|A Chain A, Crystal Structure Of Unliganded Azt-Resistant Hiv-1
Reverse Transcriptase
Length = 562
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93
I+ +VE+C E EKE K ++ I ++ T +FA K+
Sbjct: 33 IKALVEICTELEKEGK----ISKIGPENPYNTPVFAIKKK 68
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSL---TLSANHNIQQVVEVCAEHEKENKLF 71
+ L++SAT +VQKLA + ++ + + ++ A+ I Q V + + N +F
Sbjct: 215 KTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF--ANSIF 272
Query: 72 GLL----NDISSKDEN-KTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQERDY 123
+ I +D N K IIFA T + + ++N + HG +Q +R
Sbjct: 273 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 332
Query: 124 VLK 126
++K
Sbjct: 333 LVK 335
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 15 QVLMWSATWPREVQKLAED--------FLDSYIQINIGSLTLSANHNIQQVVEVCAEHEK 66
+ L++SAT +VQKLA + FLD+ + A+ I Q V + +
Sbjct: 215 KTLLFSATLDDKVQKLANNIMNKKECLFLDT-----VDKNEPEAHERIDQSVVISEKF-- 267
Query: 67 ENKLFGLL----NDISSKDEN-KTIIFAETKRKVDKITKSIQNYGWAAVGI---HGDKSQ 118
N +F + I +D N K IIFA T + + ++N + I HG +Q
Sbjct: 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 327
Query: 119 QERDYVLK 126
+R ++K
Sbjct: 328 NKRTSLVK 335
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSL---TLSANHNIQQVVEVCAEHEKENKLF 71
+ L++SAT +VQKLA + ++ + + ++ A+ I Q V + + N +F
Sbjct: 266 KTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF--ANSIF 323
Query: 72 GLL----NDISSKDEN-KTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQERDY 123
+ I +D N K IIFA T + + ++N + HG +Q +R
Sbjct: 324 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 383
Query: 124 VLK 126
++K
Sbjct: 384 LVK 386
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 45 SLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN 104
+L + N + Q ++C + +N GL D+S K E++ AE R+V ++ K +
Sbjct: 40 TLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDR----AENIRRVGEVAKLFAD 95
Query: 105 YGWAAVGIHGDKSQQERD 122
G + + +RD
Sbjct: 96 AGIICIASLISPYRTDRD 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,643,579
Number of Sequences: 62578
Number of extensions: 123456
Number of successful extensions: 604
Number of sequences better than 100.0: 187
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 187
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)