Query psy9627
Match_columns 129
No_of_seqs 116 out of 1166
Neff 9.8
Searched_HMMs 46136
Date Sat Aug 17 00:34:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328|consensus 100.0 7E-28 1.5E-32 164.7 10.7 120 5-128 192-312 (400)
2 KOG0331|consensus 99.9 6.7E-26 1.4E-30 166.7 10.9 128 1-128 254-387 (519)
3 COG0513 SrmB Superfamily II DN 99.9 2.8E-25 6.1E-30 166.2 13.8 125 1-128 189-319 (513)
4 KOG0330|consensus 99.9 5E-25 1.1E-29 155.8 9.4 120 5-128 227-346 (476)
5 KOG0343|consensus 99.9 1.4E-23 3.1E-28 154.0 10.4 125 1-128 230-361 (758)
6 KOG0333|consensus 99.9 7.9E-22 1.7E-26 144.1 12.5 111 14-128 453-563 (673)
7 KOG0332|consensus 99.9 7.1E-22 1.5E-26 139.4 10.2 120 5-128 256-376 (477)
8 KOG0326|consensus 99.9 1.6E-22 3.5E-27 140.6 6.7 120 4-128 249-368 (459)
9 KOG0339|consensus 99.9 4E-21 8.6E-26 140.2 11.3 125 1-128 385-514 (731)
10 KOG0342|consensus 99.9 2.5E-21 5.5E-26 140.3 9.8 126 1-128 245-376 (543)
11 KOG0341|consensus 99.9 5.7E-22 1.2E-26 141.0 5.8 123 1-128 341-467 (610)
12 PRK11776 ATP-dependent RNA hel 99.9 1.7E-20 3.8E-25 139.2 13.9 120 4-128 169-288 (460)
13 PRK11634 ATP-dependent RNA hel 99.8 4E-20 8.6E-25 141.3 13.7 121 4-128 171-291 (629)
14 PTZ00110 helicase; Provisional 99.8 5.9E-20 1.3E-24 138.7 14.2 124 4-128 299-423 (545)
15 KOG0327|consensus 99.8 9.8E-21 2.1E-25 133.7 9.2 118 5-128 192-309 (397)
16 KOG0345|consensus 99.8 1.3E-20 2.7E-25 136.3 9.6 126 1-129 172-304 (567)
17 KOG0338|consensus 99.8 3.9E-21 8.3E-26 140.2 6.9 121 4-128 349-472 (691)
18 KOG0340|consensus 99.8 4.2E-20 9.2E-25 129.8 9.4 123 5-128 176-300 (442)
19 PRK10590 ATP-dependent RNA hel 99.8 3.5E-19 7.5E-24 132.2 13.1 121 4-128 171-291 (456)
20 PRK04537 ATP-dependent RNA hel 99.8 6.5E-19 1.4E-23 133.6 13.4 120 5-128 182-303 (572)
21 PRK04837 ATP-dependent RNA hel 99.8 1.9E-18 4E-23 127.2 13.6 120 5-128 180-301 (423)
22 KOG0336|consensus 99.8 3.2E-19 7E-24 127.7 8.8 126 1-128 382-511 (629)
23 KOG0335|consensus 99.8 1.3E-18 2.8E-23 127.0 10.1 128 1-129 242-384 (482)
24 KOG4284|consensus 99.8 5.7E-19 1.2E-23 132.1 7.8 119 5-127 191-317 (980)
25 KOG0334|consensus 99.8 7.7E-19 1.7E-23 136.2 8.0 121 5-128 538-659 (997)
26 KOG0346|consensus 99.8 1.6E-18 3.5E-23 124.8 8.7 122 5-128 193-314 (569)
27 KOG0337|consensus 99.8 2.2E-18 4.8E-23 123.5 9.1 125 1-128 179-307 (529)
28 PRK11192 ATP-dependent RNA hel 99.8 2.2E-17 4.7E-22 121.9 14.0 119 6-128 171-291 (434)
29 PLN00206 DEAD-box ATP-dependen 99.8 1.6E-17 3.5E-22 125.0 13.4 121 5-128 293-414 (518)
30 TIGR02621 cas3_GSU0051 CRISPR- 99.8 9.3E-18 2E-22 130.2 10.9 111 14-128 206-321 (844)
31 PRK01297 ATP-dependent RNA hel 99.8 4.6E-17 1E-21 121.4 14.1 120 5-128 260-381 (475)
32 PTZ00424 helicase 45; Provisio 99.7 1.9E-16 4.2E-21 115.6 14.2 121 4-128 192-313 (401)
33 KOG0348|consensus 99.7 1.6E-16 3.4E-21 116.9 5.9 119 11-129 329-494 (708)
34 KOG0347|consensus 99.6 9E-17 1.9E-21 118.5 1.0 113 12-129 375-510 (731)
35 TIGR01587 cas3_core CRISPR-ass 99.5 1.5E-13 3.3E-18 99.1 10.1 113 12-128 154-274 (358)
36 TIGR00614 recQ_fam ATP-depende 99.5 5.1E-13 1.1E-17 99.7 13.2 111 11-128 160-272 (470)
37 TIGR03817 DECH_helic helicase/ 99.5 1.6E-13 3.5E-18 107.0 10.9 111 9-128 190-325 (742)
38 PRK11664 ATP-dependent RNA hel 99.5 3.9E-13 8.4E-18 105.5 13.0 117 5-128 141-261 (812)
39 PRK10689 transcription-repair 99.5 3.1E-13 6.8E-18 109.0 12.7 117 4-128 739-857 (1147)
40 PRK09401 reverse gyrase; Revie 99.5 1.5E-13 3.3E-18 111.0 10.7 94 13-116 268-365 (1176)
41 PHA02653 RNA helicase NPH-II; 99.5 3.6E-13 7.8E-18 103.7 12.2 104 12-120 320-435 (675)
42 TIGR01970 DEAH_box_HrpB ATP-de 99.5 6.4E-13 1.4E-17 104.3 13.2 117 5-128 138-258 (819)
43 PLN03137 ATP-dependent DNA hel 99.5 6E-13 1.3E-17 106.0 12.3 114 7-128 610-726 (1195)
44 KOG0344|consensus 99.5 1.2E-13 2.6E-18 102.5 7.3 119 6-128 313-434 (593)
45 TIGR01389 recQ ATP-dependent D 99.5 1E-12 2.2E-17 100.5 12.6 111 8-128 158-270 (591)
46 PRK11057 ATP-dependent DNA hel 99.5 1.1E-12 2.4E-17 100.5 12.4 108 12-128 173-282 (607)
47 TIGR00580 mfd transcription-re 99.4 2.8E-12 6E-17 101.8 12.5 117 4-128 590-708 (926)
48 TIGR03158 cas3_cyano CRISPR-as 99.4 4.5E-12 9.8E-17 91.7 12.2 119 6-125 174-317 (357)
49 TIGR01054 rgy reverse gyrase. 99.4 4.4E-12 9.6E-17 102.7 10.7 107 8-128 259-371 (1171)
50 COG1202 Superfamily II helicas 99.4 4.7E-12 1E-16 94.6 9.4 119 3-128 362-486 (830)
51 COG0514 RecQ Superfamily II DN 99.4 5.3E-12 1.2E-16 95.3 9.7 115 5-128 159-276 (590)
52 PRK14701 reverse gyrase; Provi 99.4 1E-11 2.2E-16 102.9 11.8 106 10-128 265-374 (1638)
53 PRK11131 ATP-dependent RNA hel 99.3 3E-11 6.4E-16 97.9 12.4 110 12-128 217-335 (1294)
54 PRK12898 secA preprotein trans 99.3 1.9E-11 4.2E-16 93.6 9.6 110 15-128 410-519 (656)
55 PRK09751 putative ATP-dependen 99.2 2.7E-10 6E-15 93.6 11.9 112 10-128 156-323 (1490)
56 TIGR01967 DEAH_box_HrpA ATP-de 99.2 7.5E-10 1.6E-14 90.1 12.4 110 12-128 210-328 (1283)
57 KOG0329|consensus 99.2 2.7E-11 5.8E-16 82.9 3.3 89 5-96 209-297 (387)
58 KOG0351|consensus 99.1 7.1E-10 1.5E-14 88.0 11.0 114 8-128 416-531 (941)
59 PRK13767 ATP-dependent helicas 99.1 1E-09 2.2E-14 87.4 9.8 48 81-128 283-336 (876)
60 PRK10917 ATP-dependent DNA hel 99.0 1E-08 2.2E-13 79.9 12.1 114 8-128 404-527 (681)
61 PRK00254 ski2-like helicase; P 99.0 4E-09 8.7E-14 82.6 9.5 121 4-128 160-317 (720)
62 PRK02362 ski2-like helicase; P 99.0 3E-09 6.4E-14 83.5 7.8 48 81-128 242-325 (737)
63 KOG0350|consensus 98.9 1.6E-09 3.6E-14 79.9 5.1 116 10-128 357-479 (620)
64 PHA02558 uvsW UvsW helicase; P 98.9 4E-09 8.7E-14 79.5 6.9 62 66-128 329-390 (501)
65 PRK09694 helicase Cas3; Provis 98.9 4.6E-08 1E-12 77.7 13.0 57 70-128 550-613 (878)
66 PRK01172 ski2-like helicase; P 98.9 1.6E-08 3.4E-13 78.8 8.7 48 81-128 235-307 (674)
67 PRK09200 preprotein translocas 98.8 4.8E-08 1E-12 76.7 10.6 109 16-128 366-474 (790)
68 KOG0349|consensus 98.8 1.2E-08 2.7E-13 74.6 6.8 117 12-129 399-555 (725)
69 PRK04914 ATP-dependent helicas 98.8 1.1E-08 2.4E-13 81.7 7.0 62 64-128 478-540 (956)
70 cd00079 HELICc Helicase superf 98.8 4.9E-08 1.1E-12 60.4 8.5 73 54-128 2-74 (131)
71 TIGR03714 secA2 accessory Sec 98.8 5.8E-08 1.3E-12 75.8 10.2 110 15-128 361-470 (762)
72 TIGR00643 recG ATP-dependent D 98.8 1.5E-07 3.2E-12 73.0 11.2 110 13-129 386-505 (630)
73 COG1201 Lhr Lhr-like helicases 98.7 2.5E-07 5.5E-12 72.7 12.0 113 6-128 176-300 (814)
74 PRK13104 secA preprotein trans 98.7 1.3E-07 2.9E-12 74.7 10.1 108 17-128 383-490 (896)
75 TIGR00631 uvrb excinuclease AB 98.7 2.5E-07 5.4E-12 71.9 10.9 64 64-128 425-488 (655)
76 PRK05298 excinuclease ABC subu 98.7 1.1E-07 2.4E-12 73.8 8.9 64 64-128 429-492 (652)
77 COG0556 UvrB Helicase subunit 98.7 5.1E-07 1.1E-11 67.7 10.9 65 62-127 427-491 (663)
78 KOG0353|consensus 98.6 1.4E-07 3.1E-12 68.2 6.9 123 3-129 240-364 (695)
79 PRK12904 preprotein translocas 98.6 3.7E-07 8E-12 72.0 9.3 107 16-128 368-474 (830)
80 PRK12906 secA preprotein trans 98.6 5.8E-07 1.3E-11 70.6 9.7 110 15-128 377-486 (796)
81 TIGR00963 secA preprotein tran 98.6 6.2E-07 1.3E-11 70.0 9.5 107 16-128 343-449 (745)
82 COG1203 CRISPR-associated heli 98.5 9.5E-07 2.1E-11 69.6 9.9 111 13-126 370-484 (733)
83 PRK13107 preprotein translocas 98.5 1.1E-06 2.4E-11 69.6 9.7 109 16-128 387-495 (908)
84 PRK12900 secA preprotein trans 98.4 2.5E-06 5.4E-11 68.2 9.2 106 17-128 537-642 (1025)
85 PRK13766 Hef nuclease; Provisi 98.3 1.9E-06 4.2E-11 68.2 7.2 66 64-129 346-420 (773)
86 KOG0352|consensus 98.2 1.3E-06 2.9E-11 64.1 3.8 114 12-128 175-301 (641)
87 COG1205 Distinct helicase fami 98.2 4.1E-05 8.9E-10 61.3 11.6 121 4-128 223-360 (851)
88 COG1643 HrpA HrpA-like helicas 98.1 9E-05 2E-09 59.1 11.6 115 5-126 187-307 (845)
89 COG1111 MPH1 ERCC4-like helica 97.9 5.9E-05 1.3E-09 56.4 6.6 65 64-128 347-421 (542)
90 TIGR00595 priA primosomal prot 97.8 0.00035 7.5E-09 53.2 10.1 34 95-128 271-308 (505)
91 PLN03142 Probable chromatin-re 97.7 9.1E-05 2E-09 60.3 6.4 66 62-128 468-533 (1033)
92 TIGR00603 rad25 DNA repair hel 97.6 0.0001 2.2E-09 58.0 5.2 59 64-128 479-537 (732)
93 COG1200 RecG RecG-like helicas 97.6 0.00075 1.6E-08 52.4 9.6 108 13-129 411-530 (677)
94 PF06862 DUF1253: Protein of u 97.6 0.0038 8.2E-08 46.7 12.8 115 13-127 215-345 (442)
95 COG1204 Superfamily II helicas 97.5 0.0012 2.5E-08 52.7 9.7 112 13-128 180-336 (766)
96 KOG0922|consensus 97.5 0.0029 6.3E-08 49.0 10.8 109 11-126 193-310 (674)
97 PRK05580 primosome assembly pr 97.4 0.0052 1.1E-07 48.5 11.4 35 94-128 438-476 (679)
98 COG1197 Mfd Transcription-repa 97.3 0.0037 8.1E-08 51.3 9.9 117 4-128 733-851 (1139)
99 COG1110 Reverse gyrase [DNA re 97.1 0.003 6.5E-08 51.3 7.9 100 12-128 275-379 (1187)
100 KOG0951|consensus 97.1 0.0055 1.2E-07 50.9 8.8 113 13-128 474-629 (1674)
101 KOG0354|consensus 96.9 0.0032 7E-08 49.6 6.2 65 64-128 394-470 (746)
102 PF00271 Helicase_C: Helicase 96.9 0.0008 1.7E-08 37.9 2.3 29 100-128 1-29 (78)
103 KOG1002|consensus 96.9 0.0015 3.3E-08 49.4 3.9 69 61-129 616-685 (791)
104 smart00490 HELICc helicase sup 96.8 0.0017 3.7E-08 36.3 3.2 32 97-128 2-33 (82)
105 cd01524 RHOD_Pyr_redox Member 96.7 0.01 2.2E-07 34.3 6.3 38 81-118 50-87 (90)
106 TIGR01407 dinG_rel DnaQ family 96.7 0.01 2.2E-07 48.1 7.9 56 70-128 662-721 (850)
107 cd01523 RHOD_Lact_B Member of 96.7 0.012 2.5E-07 34.8 6.2 38 81-118 60-97 (100)
108 COG1061 SSL2 DNA or RNA helica 96.7 0.0065 1.4E-07 45.6 6.1 47 81-128 282-328 (442)
109 KOG0948|consensus 96.5 0.019 4.1E-07 45.6 8.0 100 4-106 257-407 (1041)
110 PRK12903 secA preprotein trans 96.4 0.035 7.6E-07 44.9 8.9 100 16-119 364-463 (925)
111 PRK12326 preprotein translocas 96.3 0.065 1.4E-06 42.7 9.7 101 16-120 365-465 (764)
112 COG4098 comFA Superfamily II D 96.1 0.13 2.8E-06 37.6 9.5 100 12-115 232-340 (441)
113 smart00450 RHOD Rhodanese Homo 95.9 0.034 7.4E-07 32.0 5.2 40 80-119 54-94 (100)
114 KOG0952|consensus 95.8 0.1 2.2E-06 43.0 9.1 109 14-127 276-417 (1230)
115 KOG0947|consensus 95.8 0.14 3.1E-06 41.9 9.5 35 71-105 556-590 (1248)
116 cd01533 4RHOD_Repeat_2 Member 95.7 0.048 1E-06 32.7 5.4 38 81-118 65-104 (109)
117 COG4581 Superfamily II RNA hel 95.7 0.16 3.4E-06 42.1 9.6 44 3-46 250-295 (1041)
118 KOG0923|consensus 95.7 0.15 3.2E-06 40.3 9.0 117 3-126 400-526 (902)
119 KOG0385|consensus 95.6 0.065 1.4E-06 42.8 7.0 68 61-129 467-534 (971)
120 PRK12902 secA preprotein trans 95.5 0.14 3.1E-06 41.7 8.8 105 15-123 376-480 (939)
121 CHL00122 secA preprotein trans 95.4 0.17 3.8E-06 41.0 9.0 97 16-116 362-458 (870)
122 PRK11448 hsdR type I restricti 95.3 0.054 1.2E-06 45.2 6.1 46 81-128 697-751 (1123)
123 cd01526 RHOD_ThiF Member of th 95.2 0.041 9E-07 33.8 4.0 39 81-119 71-111 (122)
124 KOG0950|consensus 95.2 0.12 2.5E-06 42.2 7.2 46 82-127 460-543 (1008)
125 cd01449 TST_Repeat_2 Thiosulfa 95.2 0.058 1.2E-06 32.7 4.6 49 69-117 65-114 (118)
126 KOG0390|consensus 95.1 0.1 2.2E-06 41.8 6.8 60 65-128 578-641 (776)
127 cd01534 4RHOD_Repeat_3 Member 95.1 0.051 1.1E-06 31.7 4.1 36 82-117 56-91 (95)
128 cd01448 TST_Repeat_1 Thiosulfa 95.1 0.09 2E-06 32.0 5.3 39 80-118 77-117 (122)
129 COG1199 DinG Rad3-related DNA 95.1 0.17 3.7E-06 39.9 7.9 50 70-119 467-517 (654)
130 cd01519 RHOD_HSP67B2 Member of 95.1 0.052 1.1E-06 32.1 4.1 38 81-118 65-103 (106)
131 KOG0920|consensus 95.0 0.45 9.7E-06 39.0 10.2 112 12-126 318-464 (924)
132 cd01529 4RHOD_Repeats Member o 95.0 0.059 1.3E-06 31.5 4.1 37 81-117 55-92 (96)
133 cd01527 RHOD_YgaP Member of th 94.9 0.055 1.2E-06 31.7 3.9 38 81-118 53-91 (99)
134 PRK08074 bifunctional ATP-depe 94.9 0.28 6.1E-06 40.4 8.9 58 69-128 739-800 (928)
135 TIGR00604 rad3 DNA repair heli 94.8 0.34 7.4E-06 38.7 9.1 60 68-128 508-574 (705)
136 KOG0925|consensus 94.7 0.56 1.2E-05 36.0 9.4 96 11-114 189-294 (699)
137 PRK13103 secA preprotein trans 94.6 0.27 5.8E-06 40.2 7.9 100 16-119 387-486 (913)
138 COG0553 HepA Superfamily II DN 94.6 0.16 3.5E-06 40.9 6.8 65 65-129 692-758 (866)
139 cd01518 RHOD_YceA Member of th 94.5 0.056 1.2E-06 31.9 3.2 38 81-118 60-98 (101)
140 KOG0384|consensus 94.4 0.048 1E-06 45.4 3.6 63 66-129 684-746 (1373)
141 cd01521 RHOD_PspE2 Member of t 94.4 0.088 1.9E-06 31.6 4.0 39 81-119 63-103 (110)
142 cd01520 RHOD_YbbB Member of th 94.4 0.084 1.8E-06 32.7 4.0 39 80-118 84-123 (128)
143 PRK07246 bifunctional ATP-depe 94.4 0.3 6.5E-06 39.7 7.9 44 69-114 635-678 (820)
144 cd01528 RHOD_2 Member of the R 94.3 0.091 2E-06 31.0 3.9 39 81-119 57-96 (101)
145 KOG1000|consensus 94.2 0.16 3.5E-06 38.8 5.7 119 5-128 415-538 (689)
146 PRK12901 secA preprotein trans 94.2 0.33 7.1E-06 40.3 7.7 99 18-120 568-666 (1112)
147 cd01447 Polysulfide_ST Polysul 94.1 0.075 1.6E-06 31.2 3.2 38 81-118 60-98 (103)
148 PRK10287 thiosulfate:cyanide s 94.0 0.29 6.3E-06 29.4 5.6 47 72-118 50-96 (104)
149 PRK12899 secA preprotein trans 94.0 0.61 1.3E-05 38.4 8.7 102 15-120 505-606 (970)
150 cd01444 GlpE_ST GlpE sulfurtra 93.9 0.13 2.9E-06 29.7 4.0 37 81-117 55-92 (96)
151 KOG0392|consensus 93.9 0.13 2.9E-06 43.1 5.0 100 29-128 1269-1389(1549)
152 cd01525 RHOD_Kc Member of the 93.6 0.17 3.6E-06 29.9 4.1 37 82-118 65-102 (105)
153 COG1198 PriA Primosomal protei 93.5 0.24 5.3E-06 39.6 5.8 66 60-126 224-290 (730)
154 KOG0391|consensus 93.5 0.23 4.9E-06 41.9 5.7 62 66-128 1261-1322(1958)
155 PF00581 Rhodanese: Rhodanese- 93.3 0.36 7.7E-06 28.5 5.3 39 81-119 66-110 (113)
156 PRK11747 dinG ATP-dependent DN 93.2 1.1 2.4E-05 35.9 9.1 54 69-127 522-576 (697)
157 cd01535 4RHOD_Repeat_4 Member 93.2 0.37 8.1E-06 30.7 5.4 47 70-118 39-86 (145)
158 PLN02160 thiosulfate sulfurtra 93.2 0.14 3E-06 32.3 3.3 39 81-119 80-119 (136)
159 PF11019 DUF2608: Protein of u 93.1 0.52 1.1E-05 32.9 6.4 61 51-113 148-209 (252)
160 TIGR00595 priA primosomal prot 93.0 0.57 1.2E-05 36.0 7.0 62 64-126 8-70 (505)
161 cd01532 4RHOD_Repeat_1 Member 93.0 0.22 4.7E-06 28.9 3.8 38 81-118 49-89 (92)
162 TIGR02981 phageshock_pspE phag 92.8 0.53 1.1E-05 28.1 5.3 37 81-117 57-93 (101)
163 PRK05580 primosome assembly pr 92.7 0.64 1.4E-05 37.1 7.1 63 63-126 172-235 (679)
164 PRK14873 primosome assembly pr 92.5 0.75 1.6E-05 36.6 7.2 63 63-126 170-234 (665)
165 PRK00162 glpE thiosulfate sulf 92.3 0.82 1.8E-05 27.2 5.8 39 81-119 57-96 (108)
166 KOG0924|consensus 92.2 1.7 3.6E-05 35.0 8.5 118 2-126 489-617 (1042)
167 PRK11493 sseA 3-mercaptopyruva 92.2 0.31 6.8E-06 34.4 4.4 38 81-118 230-268 (281)
168 TIGR00596 rad1 DNA repair prot 92.1 0.26 5.6E-06 40.0 4.3 43 62-104 267-317 (814)
169 PRK05320 rhodanese superfamily 92.0 0.27 5.9E-06 34.4 3.9 40 81-120 174-214 (257)
170 cd01522 RHOD_1 Member of the R 92.0 0.4 8.6E-06 29.2 4.2 38 81-118 63-101 (117)
171 PRK00142 putative rhodanese-re 91.9 0.67 1.5E-05 33.4 5.8 40 81-120 170-210 (314)
172 cd01445 TST_Repeats Thiosulfat 91.8 0.63 1.4E-05 29.3 5.1 50 69-118 82-135 (138)
173 PRK01415 hypothetical protein; 91.6 0.25 5.5E-06 34.4 3.4 40 81-120 170-210 (247)
174 PRK10917 ATP-dependent DNA hel 91.2 1.1 2.4E-05 35.8 6.9 55 70-126 300-358 (681)
175 cd01530 Cdc25 Cdc25 phosphatas 91.2 0.48 1E-05 29.1 4.0 38 81-118 67-118 (121)
176 cd00268 DEADc DEAD-box helicas 90.8 1.6 3.4E-05 28.8 6.5 63 64-126 47-117 (203)
177 cd00158 RHOD Rhodanese Homolog 90.5 0.82 1.8E-05 25.6 4.4 38 80-117 48-86 (89)
178 KOG1123|consensus 90.2 0.95 2E-05 35.0 5.4 61 62-128 524-584 (776)
179 PRK06646 DNA polymerase III su 90.2 1.2 2.5E-05 28.8 5.2 45 57-102 5-49 (154)
180 PLN02723 3-mercaptopyruvate su 90.2 0.73 1.6E-05 33.3 4.7 38 81-118 268-306 (320)
181 KOG0926|consensus 90.0 1.1 2.5E-05 36.5 5.9 88 13-105 414-504 (1172)
182 TIGR03865 PQQ_CXXCW PQQ-depend 90.0 0.64 1.4E-05 30.2 3.9 38 81-118 115-154 (162)
183 PRK05728 DNA polymerase III su 89.9 1.2 2.5E-05 28.3 5.0 45 57-102 5-49 (142)
184 smart00487 DEXDc DEAD-like hel 89.8 0.95 2.1E-05 29.0 4.7 41 5-45 152-192 (201)
185 TIGR00643 recG ATP-dependent D 89.7 1.5 3.3E-05 34.6 6.5 55 70-126 274-332 (630)
186 KOG0389|consensus 89.5 1.5 3.3E-05 35.6 6.2 63 65-128 761-823 (941)
187 KOG0387|consensus 89.4 1.4 3E-05 35.7 5.9 64 64-128 529-593 (923)
188 TIGR03817 DECH_helic helicase/ 89.0 2.1 4.6E-05 34.6 6.9 55 70-124 69-126 (742)
189 KOG0347|consensus 88.6 0.84 1.8E-05 35.6 4.2 44 84-127 265-312 (731)
190 PF04273 DUF442: Putative phos 88.6 1.9 4.1E-05 26.2 5.1 46 52-101 56-105 (110)
191 COG0607 PspE Rhodanese-related 88.3 0.86 1.9E-05 26.8 3.4 38 81-118 60-98 (110)
192 PF04364 DNA_pol3_chi: DNA pol 87.9 1.6 3.5E-05 27.5 4.6 45 57-102 5-49 (137)
193 cd01443 Cdc25_Acr2p Cdc25 enzy 87.8 4.2 9.1E-05 24.3 7.3 38 81-118 65-110 (113)
194 KOG0388|consensus 87.6 1 2.2E-05 36.3 4.2 64 64-128 1027-1090(1185)
195 COG0513 SrmB Superfamily II DN 87.0 4.6 0.0001 31.2 7.5 64 64-127 77-149 (513)
196 TIGR01389 recQ ATP-dependent D 86.9 3 6.5E-05 32.6 6.5 45 82-126 53-97 (591)
197 TIGR00614 recQ_fam ATP-depende 86.8 3.2 6.8E-05 31.6 6.4 45 82-126 51-95 (470)
198 PRK08762 molybdopterin biosynt 86.6 2.4 5.3E-05 31.3 5.6 38 81-118 56-94 (376)
199 TIGR03117 cas_csf4 CRISPR-asso 86.5 11 0.00024 30.1 9.3 37 80-117 468-505 (636)
200 PRK05597 molybdopterin biosynt 86.1 1.1 2.3E-05 32.9 3.5 38 81-118 313-351 (355)
201 KOG4439|consensus 85.7 2.2 4.7E-05 34.3 5.1 71 58-128 722-792 (901)
202 cd01531 Acr2p Eukaryotic arsen 85.6 5.7 0.00012 23.7 7.2 38 81-118 61-108 (113)
203 COG2519 GCD14 tRNA(1-methylade 85.3 11 0.00023 26.6 8.1 69 35-107 144-213 (256)
204 PRK11493 sseA 3-mercaptopyruva 84.8 2.6 5.7E-05 29.7 4.9 51 68-118 73-125 (281)
205 smart00115 CASc Caspase, inter 84.7 3.2 6.8E-05 28.7 5.1 49 80-129 6-65 (241)
206 PRK05600 thiamine biosynthesis 84.4 2.5 5.5E-05 31.2 4.8 37 81-117 331-369 (370)
207 PF02399 Herpes_ori_bp: Origin 84.3 22 0.00048 29.3 11.2 106 13-120 180-320 (824)
208 PLN02723 3-mercaptopyruvate su 84.2 2.9 6.4E-05 30.2 5.0 51 68-118 89-141 (320)
209 cd01446 DSP_MapKP N-terminal r 83.9 2.4 5.1E-05 26.2 3.9 39 81-119 74-124 (132)
210 PRK04537 ATP-dependent RNA hel 83.3 7.4 0.00016 30.5 7.1 44 83-126 85-132 (572)
211 PRK11776 ATP-dependent RNA hel 83.0 7.6 0.00016 29.4 7.0 57 70-126 59-121 (460)
212 PRK11634 ATP-dependent RNA hel 83.0 7.8 0.00017 30.8 7.2 63 64-126 54-123 (629)
213 PF13307 Helicase_C_2: Helicas 82.6 1.6 3.5E-05 28.3 2.9 45 80-128 7-55 (167)
214 PRK11784 tRNA 2-selenouridine 82.4 2.8 6E-05 30.8 4.2 40 81-120 87-127 (345)
215 TIGR03167 tRNA_sel_U_synt tRNA 82.1 4.3 9.4E-05 29.3 5.1 38 82-119 74-112 (311)
216 cd03418 GRX_GRXb_1_3_like Glut 82.0 6.3 0.00014 21.4 5.5 41 85-125 2-43 (75)
217 KOG4150|consensus 81.9 11 0.00024 30.0 7.3 108 12-124 450-575 (1034)
218 PRK07878 molybdopterin biosynt 81.1 2.4 5.1E-05 31.6 3.6 39 81-119 342-381 (392)
219 COG0653 SecA Preprotein transl 81.0 8 0.00017 31.7 6.6 57 62-119 410-466 (822)
220 PRK07411 hypothetical protein; 80.6 2.6 5.7E-05 31.4 3.7 41 81-121 341-381 (390)
221 PRK13766 Hef nuclease; Provisi 80.4 11 0.00024 30.5 7.3 47 80-126 56-106 (773)
222 COG1110 Reverse gyrase [DNA re 80.2 8.6 0.00019 32.5 6.5 49 80-128 123-177 (1187)
223 KOG0330|consensus 79.9 9.8 0.00021 28.7 6.2 51 68-121 118-172 (476)
224 COG4096 HsdR Type I site-speci 79.7 6.6 0.00014 32.2 5.7 39 82-120 426-469 (875)
225 PRK09629 bifunctional thiosulf 79.6 4.6 0.0001 32.0 4.9 49 70-118 211-260 (610)
226 COG1198 PriA Primosomal protei 78.9 13 0.00029 30.2 7.2 80 12-96 348-434 (730)
227 PRK01297 ATP-dependent RNA hel 78.7 14 0.00031 28.0 7.2 43 82-124 162-208 (475)
228 KOG0338|consensus 78.2 9.7 0.00021 29.8 6.0 60 68-127 238-301 (691)
229 KOG0339|consensus 78.2 8.6 0.00019 30.1 5.7 47 82-128 295-346 (731)
230 TIGR00580 mfd transcription-re 78.2 11 0.00023 31.6 6.7 55 70-126 490-548 (926)
231 PRK14701 reverse gyrase; Provi 77.8 6 0.00013 35.0 5.3 46 81-126 121-172 (1638)
232 COG1205 Distinct helicase fami 77.6 13 0.00027 30.9 6.9 58 69-126 102-165 (851)
233 PF13245 AAA_19: Part of AAA d 77.6 4.5 9.8E-05 22.7 3.3 52 62-114 19-74 (76)
234 PRK04837 ATP-dependent RNA hel 77.2 15 0.00034 27.4 6.9 45 82-126 83-131 (423)
235 cd00032 CASc Caspase, interleu 76.4 8 0.00017 26.7 4.9 48 81-129 8-67 (243)
236 cd03027 GRX_DEP Glutaredoxin ( 75.9 11 0.00023 20.5 5.8 41 84-124 2-43 (73)
237 cd03031 GRX_GRX_like Glutaredo 75.6 15 0.00033 23.5 5.6 42 84-125 1-49 (147)
238 KOG0329|consensus 75.5 6.9 0.00015 27.8 4.3 57 70-126 97-159 (387)
239 PRK11057 ATP-dependent DNA hel 74.9 14 0.00031 29.2 6.4 45 82-126 65-109 (607)
240 PRK12898 secA preprotein trans 74.9 16 0.00034 29.4 6.6 45 81-125 143-191 (656)
241 PF10100 DUF2338: Uncharacteri 74.0 11 0.00023 28.5 5.2 104 5-123 98-210 (429)
242 PF00270 DEAD: DEAD/DEAH box h 73.7 19 0.00042 22.6 7.2 48 72-119 34-85 (169)
243 PRK12326 preprotein translocas 73.4 25 0.00055 28.7 7.3 46 81-126 118-167 (764)
244 KOG0331|consensus 73.3 10 0.00022 29.5 5.1 46 82-127 165-214 (519)
245 cd00046 DEXDc DEAD-like helica 73.3 16 0.00036 21.5 6.3 58 65-122 12-73 (144)
246 COG0514 RecQ Superfamily II DN 73.2 9.4 0.0002 30.2 4.9 56 70-127 47-102 (590)
247 TIGR00963 secA preprotein tran 73.2 21 0.00046 29.1 6.9 46 81-126 96-145 (745)
248 COG2927 HolC DNA polymerase II 73.0 14 0.0003 23.7 4.9 45 58-103 6-50 (144)
249 PRK11192 ATP-dependent RNA hel 72.4 12 0.00026 28.0 5.3 45 82-126 73-121 (434)
250 PRK13103 secA preprotein trans 71.7 27 0.00058 29.2 7.3 46 81-126 122-171 (913)
251 PF00697 PRAI: N-(5'phosphorib 71.2 28 0.0006 23.3 6.4 37 82-120 49-85 (197)
252 PLN03137 ATP-dependent DNA hel 70.8 20 0.00044 30.8 6.5 46 82-127 500-545 (1195)
253 PRK13958 N-(5'-phosphoribosyl) 70.7 30 0.00065 23.4 7.5 37 82-120 53-89 (207)
254 PRK09751 putative ATP-dependen 70.6 24 0.00052 31.2 7.1 45 82-126 37-97 (1490)
255 cd03028 GRX_PICOT_like Glutare 70.6 18 0.00038 20.8 5.7 43 81-123 6-54 (90)
256 PRK12906 secA preprotein trans 70.0 38 0.00083 28.0 7.8 56 68-126 110-169 (796)
257 COG0135 TrpF Phosphoribosylant 69.6 32 0.0007 23.4 6.4 50 66-120 39-89 (208)
258 KOG1001|consensus 68.9 7.6 0.00016 31.2 3.7 66 63-129 520-586 (674)
259 PRK02362 ski2-like helicase; P 68.8 14 0.00031 29.9 5.3 48 70-119 57-107 (737)
260 PF10740 DUF2529: Protein of u 68.6 9 0.00019 25.3 3.4 33 81-113 81-115 (172)
261 PRK09629 bifunctional thiosulf 68.0 15 0.00032 29.3 5.1 50 69-118 68-119 (610)
262 PF07517 SecA_DEAD: SecA DEAD- 67.4 42 0.0009 23.8 7.0 56 68-126 107-166 (266)
263 PRK14461 ribosomal RNA large s 67.0 43 0.00094 25.0 7.0 89 13-105 204-299 (371)
264 KOG0352|consensus 66.3 5.4 0.00012 30.5 2.3 46 82-127 61-106 (641)
265 COG4098 comFA Superfamily II D 65.2 56 0.0012 24.5 7.9 94 16-122 91-186 (441)
266 PLN02363 phosphoribosylanthran 65.0 46 0.001 23.4 6.9 37 82-120 100-136 (256)
267 COG1054 Predicted sulfurtransf 64.1 12 0.00026 27.0 3.6 39 81-119 171-210 (308)
268 PRK13104 secA preprotein trans 63.4 49 0.0011 27.8 7.2 45 81-125 122-170 (896)
269 PRK10689 transcription-repair 63.1 37 0.00081 29.3 6.7 46 81-126 648-697 (1147)
270 cd01562 Thr-dehyd Threonine de 62.8 50 0.0011 23.3 6.7 64 65-128 47-110 (304)
271 PF02617 ClpS: ATP-dependent C 62.6 8.8 0.00019 21.8 2.3 26 81-106 46-71 (82)
272 PF09413 DUF2007: Domain of un 62.0 15 0.00032 19.7 3.1 29 85-113 2-30 (67)
273 TIGR01054 rgy reverse gyrase. 61.6 17 0.00038 31.2 4.6 46 81-126 120-172 (1171)
274 cd06448 L-Ser-dehyd Serine deh 61.5 59 0.0013 23.5 7.3 47 83-129 51-97 (316)
275 cd03030 GRX_SH3BGR Glutaredoxi 61.4 31 0.00066 20.2 5.2 36 91-126 15-50 (92)
276 PF11496 HDA2-3: Class II hist 61.3 28 0.00061 25.0 5.1 58 64-121 95-156 (297)
277 PRK13767 ATP-dependent helicas 61.2 44 0.00095 27.9 6.8 44 83-126 85-144 (876)
278 PF11823 DUF3343: Protein of u 61.0 23 0.00051 19.5 3.8 27 84-110 3-29 (73)
279 TIGR00365 monothiol glutaredox 60.8 32 0.00068 20.1 6.6 43 81-123 10-58 (97)
280 KOG0386|consensus 60.2 14 0.00031 31.1 3.8 65 64-129 709-773 (1157)
281 PRK09200 preprotein translocas 59.9 56 0.0012 27.1 7.0 45 81-125 118-167 (790)
282 KOG0340|consensus 59.6 15 0.00033 27.4 3.5 51 72-122 64-119 (442)
283 COG1412 Uncharacterized protei 59.0 41 0.00089 21.3 5.0 40 67-115 87-126 (136)
284 PRK12904 preprotein translocas 58.9 63 0.0014 26.9 7.1 45 82-126 122-170 (830)
285 COG1200 RecG RecG-like helicas 58.6 54 0.0012 26.6 6.5 59 67-127 298-360 (677)
286 PF08704 GCD14: tRNA methyltra 58.6 26 0.00055 24.6 4.4 53 52-108 112-165 (247)
287 TIGR00348 hsdR type I site-spe 58.3 47 0.001 26.7 6.4 38 82-119 514-556 (667)
288 TIGR03191 benz_CoA_bzdO benzoy 57.8 67 0.0014 24.5 6.8 52 64-118 347-403 (430)
289 TIGR00537 hemK_rel_arch HemK-r 57.3 9.7 0.00021 24.7 2.1 38 81-118 132-169 (179)
290 PRK10590 ATP-dependent RNA hel 56.9 75 0.0016 24.1 7.0 41 83-123 76-120 (456)
291 KOG0953|consensus 56.9 47 0.001 26.5 5.8 48 80-128 355-403 (700)
292 PF07485 DUF1529: Domain of Un 56.9 19 0.0004 22.4 3.2 37 81-117 53-92 (123)
293 PF00462 Glutaredoxin: Glutare 56.6 27 0.00058 18.0 5.0 40 86-125 2-42 (60)
294 PF13407 Peripla_BP_4: Peripla 55.8 61 0.0013 21.8 6.2 47 69-115 43-89 (257)
295 COG4408 Uncharacterized protei 55.7 39 0.00084 25.1 5.0 96 10-122 110-211 (431)
296 TIGR02181 GRX_bact Glutaredoxi 55.5 33 0.00072 18.7 4.7 35 90-124 7-41 (79)
297 PLN02356 phosphateglycerate ki 55.1 93 0.002 23.7 7.7 48 82-129 103-150 (423)
298 PRK12900 secA preprotein trans 54.8 74 0.0016 27.2 6.9 57 68-126 168-227 (1025)
299 PRK15327 type III secretion sy 54.5 69 0.0015 24.2 6.2 50 63-112 168-225 (393)
300 TIGR00696 wecB_tagA_cpsF bacte 54.2 61 0.0013 21.4 6.8 58 68-126 35-94 (177)
301 PRK07476 eutB threonine dehydr 54.1 81 0.0017 22.8 7.0 66 64-129 48-113 (322)
302 KOG0383|consensus 54.0 8 0.00017 31.2 1.5 62 65-128 615-676 (696)
303 PF07652 Flavi_DEAD: Flaviviru 53.9 24 0.00053 22.7 3.4 36 70-106 22-57 (148)
304 KOG1615|consensus 53.6 18 0.00039 24.6 2.9 28 92-119 90-117 (227)
305 PTZ00110 helicase; Provisional 53.5 44 0.00095 26.2 5.4 44 82-125 203-250 (545)
306 COG4152 ABC-type uncharacteriz 52.9 83 0.0018 22.5 6.4 35 67-103 166-201 (300)
307 cd00860 ThrRS_anticodon ThrRS 52.3 40 0.00087 18.7 5.4 12 103-114 48-59 (91)
308 TIGR03190 benz_CoA_bzdN benzoy 52.1 77 0.0017 23.5 6.3 52 64-118 299-355 (377)
309 PF03808 Glyco_tran_WecB: Glyc 52.0 64 0.0014 21.0 6.4 46 81-126 47-95 (172)
310 cd00640 Trp-synth-beta_II Tryp 51.9 74 0.0016 21.7 7.9 65 64-128 29-95 (244)
311 PF00258 Flavodoxin_1: Flavodo 51.6 22 0.00047 22.0 3.0 22 90-111 9-30 (143)
312 TIGR01244 conserved hypothetic 51.6 57 0.0012 20.3 9.4 82 16-102 8-106 (135)
313 TIGR01587 cas3_core CRISPR-ass 50.6 44 0.00094 24.2 4.8 47 71-117 18-65 (358)
314 PRK05568 flavodoxin; Provision 50.0 28 0.00062 21.5 3.3 23 90-112 14-36 (142)
315 TIGR02991 ectoine_eutB ectoine 49.9 96 0.0021 22.4 7.2 66 64-129 48-113 (317)
316 KOG0389|consensus 49.8 52 0.0011 27.4 5.2 41 80-120 446-487 (941)
317 COG1877 OtsB Trehalose-6-phosp 49.5 34 0.00073 24.3 3.9 45 70-116 45-89 (266)
318 PF13361 UvrD_C: UvrD-like hel 49.5 81 0.0018 22.2 6.0 40 81-121 76-115 (351)
319 PRK01222 N-(5'-phosphoribosyl) 49.4 80 0.0017 21.4 7.8 37 82-120 55-91 (210)
320 KOG1133|consensus 48.8 1.5E+02 0.0033 24.4 8.3 41 67-107 614-654 (821)
321 PRK12902 secA preprotein trans 48.3 1.1E+02 0.0023 26.0 6.8 55 69-126 116-174 (939)
322 PRK12899 secA preprotein trans 48.0 92 0.002 26.5 6.5 43 83-125 136-182 (970)
323 TIGR02562 cas3_yersinia CRISPR 47.8 21 0.00046 30.4 3.0 38 86-123 760-803 (1110)
324 PRK06756 flavodoxin; Provision 47.6 30 0.00066 21.6 3.2 23 90-112 14-36 (148)
325 PF13344 Hydrolase_6: Haloacid 47.3 58 0.0013 19.1 4.4 29 82-110 30-59 (101)
326 PRK00254 ski2-like helicase; P 46.7 79 0.0017 25.7 6.0 49 71-120 58-109 (720)
327 PRK09271 flavodoxin; Provision 46.4 33 0.00072 21.9 3.3 21 90-110 13-33 (160)
328 PRK08198 threonine dehydratase 46.4 1.2E+02 0.0026 22.6 6.9 49 81-129 68-116 (404)
329 COG1204 Superfamily II helicas 46.3 66 0.0014 26.5 5.5 49 69-118 64-115 (766)
330 PTZ00062 glutaredoxin; Provisi 46.0 93 0.002 21.1 6.7 44 81-124 111-160 (204)
331 PF05717 TnpB_IS66: IS66 Orf2 45.3 68 0.0015 19.3 4.5 31 64-94 14-46 (107)
332 PRK09427 bifunctional indole-3 45.3 1.4E+02 0.0031 23.0 7.0 39 82-122 307-345 (454)
333 COG0529 CysC Adenylylsulfate k 45.1 59 0.0013 21.9 4.2 45 82-126 22-82 (197)
334 PTZ00380 microtubule-associate 44.7 76 0.0016 19.7 5.3 51 54-104 40-95 (121)
335 PRK10329 glutaredoxin-like pro 44.4 58 0.0013 18.3 6.0 40 84-123 2-42 (81)
336 PRK01269 tRNA s(4)U8 sulfurtra 44.1 76 0.0017 24.5 5.3 31 81-111 448-478 (482)
337 PRK00033 clpS ATP-dependent Cl 44.0 29 0.00064 20.7 2.5 31 80-110 66-96 (100)
338 PRK09281 F0F1 ATP synthase sub 43.5 1.5E+02 0.0031 23.3 6.7 39 82-120 218-267 (502)
339 PRK07048 serine/threonine dehy 42.3 1.3E+02 0.0028 21.7 6.8 47 83-129 72-118 (321)
340 PF02863 Arg_repressor_C: Argi 42.0 42 0.0009 18.4 2.8 24 81-104 46-69 (70)
341 cd01132 F1_ATPase_alpha F1 ATP 42.0 1.3E+02 0.0028 21.6 6.5 39 82-120 125-174 (274)
342 PRK13803 bifunctional phosphor 41.7 1.8E+02 0.004 23.3 8.1 34 82-117 57-90 (610)
343 cd06301 PBP1_rhizopine_binding 41.5 1.1E+02 0.0024 20.7 7.0 36 81-116 56-91 (272)
344 PF03129 HGTP_anticodon: Antic 41.4 67 0.0014 18.1 5.1 28 94-121 17-44 (94)
345 KOG2792|consensus 41.1 41 0.00089 23.9 3.2 53 66-118 161-214 (280)
346 TIGR01127 ilvA_1Cterm threonin 41.0 1.5E+02 0.0032 22.0 7.1 47 83-129 48-94 (380)
347 cd06287 PBP1_LacI_like_8 Ligan 40.6 1.1E+02 0.0023 21.1 5.4 28 81-108 176-203 (269)
348 PF13167 GTP-bdg_N: GTP-bindin 40.5 78 0.0017 18.7 4.2 29 94-122 45-73 (95)
349 PF14417 MEDS: MEDS: MEthanoge 40.3 1.1E+02 0.0023 20.2 5.9 52 55-107 20-72 (191)
350 TIGR01754 flav_RNR ribonucleot 40.2 41 0.00089 20.9 2.9 26 85-110 4-33 (140)
351 cd06533 Glyco_transf_WecG_TagA 40.2 1E+02 0.0022 20.0 6.6 56 69-125 34-92 (171)
352 KOG1802|consensus 39.9 71 0.0015 26.2 4.6 35 81-115 453-487 (935)
353 PRK14188 bifunctional 5,10-met 39.9 1.4E+02 0.0031 21.5 6.3 48 68-115 143-191 (296)
354 PF05221 AdoHcyase: S-adenosyl 39.9 82 0.0018 22.5 4.5 55 64-121 53-107 (268)
355 cd02066 GRX_family Glutaredoxi 39.7 56 0.0012 16.8 5.6 23 90-112 8-30 (72)
356 KOG1503|consensus 39.4 91 0.002 22.1 4.6 53 66-119 151-203 (354)
357 KOG1015|consensus 39.0 97 0.0021 26.8 5.3 64 64-128 1125-1210(1567)
358 TIGR01680 Veg_Stor_Prot vegeta 38.8 77 0.0017 22.7 4.3 26 83-108 161-188 (275)
359 PF02780 Transketolase_C: Tran 38.7 77 0.0017 19.1 4.0 31 83-113 10-42 (124)
360 KOG2501|consensus 38.7 1.1E+02 0.0024 19.9 6.0 57 57-113 41-100 (157)
361 cd06280 PBP1_LacI_like_4 Ligan 38.6 69 0.0015 21.7 4.1 28 81-108 170-197 (263)
362 TIGR01138 cysM cysteine syntha 38.0 1.5E+02 0.0032 21.1 7.7 47 83-129 59-105 (290)
363 PRK12903 secA preprotein trans 37.9 2E+02 0.0044 24.4 6.9 44 83-126 121-167 (925)
364 CHL00122 secA preprotein trans 37.7 2.3E+02 0.005 24.0 7.2 46 81-126 116-165 (870)
365 TIGR02194 GlrX_NrdH Glutaredox 37.6 69 0.0015 17.2 5.3 23 91-113 8-30 (72)
366 COG1647 Esterase/lipase [Gener 37.4 31 0.00067 24.0 2.1 30 88-117 24-57 (243)
367 PF01583 APS_kinase: Adenylyls 37.3 57 0.0012 21.1 3.3 35 93-127 17-62 (156)
368 CHL00059 atpA ATP synthase CF1 37.3 1.6E+02 0.0035 23.0 6.1 51 70-120 184-246 (485)
369 TIGR03324 alt_F1F0_F1_al alter 36.4 1.9E+02 0.0041 22.7 6.4 39 82-120 218-267 (497)
370 cd01452 VWA_26S_proteasome_sub 36.3 77 0.0017 21.2 3.8 33 83-115 108-145 (187)
371 PLN02970 serine racemase 36.3 1.7E+02 0.0036 21.3 7.1 64 66-129 58-121 (328)
372 PF09383 NIL: NIL domain; Int 36.3 17 0.00037 20.0 0.7 33 86-118 7-39 (76)
373 PF04110 APG12: Ubiquitin-like 36.2 54 0.0012 19.1 2.7 55 52-106 13-74 (87)
374 PRK10876 recB exonuclease V su 36.1 95 0.0021 27.0 5.1 43 82-124 551-593 (1181)
375 PRK13107 preprotein translocas 36.0 2.1E+02 0.0045 24.3 6.8 44 82-125 123-170 (908)
376 TIGR01866 cas_Csn2 CRISPR-asso 35.8 1.5E+02 0.0032 20.5 5.4 49 64-115 147-200 (216)
377 PF03668 ATP_bind_2: P-loop AT 35.7 33 0.00073 24.6 2.2 29 90-118 255-283 (284)
378 PF09711 Cas_Csn2: CRISPR-asso 35.7 1.4E+02 0.003 20.1 6.3 37 80-116 128-169 (188)
379 PRK06815 hypothetical protein; 35.7 1.7E+02 0.0036 21.1 6.9 48 82-129 67-114 (317)
380 KOG4238|consensus 35.6 41 0.00089 25.4 2.6 30 97-126 69-109 (627)
381 PRK11104 hemG protoporphyrinog 35.6 48 0.001 21.7 2.8 19 90-109 13-31 (177)
382 PRK08576 hypothetical protein; 35.4 93 0.002 23.9 4.5 40 87-126 4-47 (438)
383 PRK08105 flavodoxin; Provision 35.3 60 0.0013 20.6 3.2 24 90-113 14-37 (149)
384 PRK14454 ribosomal RNA large s 35.3 1.6E+02 0.0035 21.7 5.7 88 23-114 194-290 (342)
385 PRK06703 flavodoxin; Provision 34.8 61 0.0013 20.3 3.1 21 90-110 14-34 (151)
386 COG1911 RPL30 Ribosomal protei 34.7 64 0.0014 19.3 2.9 44 1-44 22-69 (100)
387 TIGR02079 THD1 threonine dehyd 34.7 2E+02 0.0043 21.7 6.5 46 83-128 64-109 (409)
388 TIGR00376 DNA helicase, putati 34.4 1.5E+02 0.0034 23.8 5.8 52 63-115 183-234 (637)
389 TIGR00936 ahcY adenosylhomocys 34.3 1.6E+02 0.0035 22.3 5.6 53 64-119 42-94 (406)
390 PF09419 PGP_phosphatase: Mito 34.0 1.4E+02 0.003 19.6 5.5 40 83-126 78-125 (168)
391 smart00460 TGc Transglutaminas 34.0 52 0.0011 17.2 2.4 24 92-115 10-33 (68)
392 cd01561 CBS_like CBS_like: Thi 33.9 1.7E+02 0.0037 20.6 8.0 65 64-128 31-98 (291)
393 TIGR02679 conserved hypothetic 33.9 1.8E+02 0.0039 21.9 5.8 57 57-119 252-310 (385)
394 KOG0070|consensus 33.8 1.5E+02 0.0032 19.9 5.1 24 82-105 118-146 (181)
395 PF11116 DUF2624: Protein of u 33.8 61 0.0013 18.8 2.7 30 91-126 32-61 (85)
396 PRK01655 spxA transcriptional 33.8 1.1E+02 0.0024 19.0 4.1 24 90-113 8-31 (131)
397 COG0716 FldA Flavodoxins [Ener 33.7 64 0.0014 20.3 3.1 26 90-115 14-39 (151)
398 PRK09280 F0F1 ATP synthase sub 33.6 2.2E+02 0.0049 22.1 6.3 39 82-120 201-251 (463)
399 cd00401 AdoHcyase S-adenosyl-L 33.6 1.7E+02 0.0037 22.3 5.7 54 64-120 46-99 (413)
400 TIGR03714 secA2 accessory Sec 33.3 2.1E+02 0.0045 23.8 6.3 44 81-124 110-162 (762)
401 PRK05569 flavodoxin; Provision 33.2 71 0.0015 19.6 3.2 20 90-109 14-33 (141)
402 cd06270 PBP1_GalS_like Ligand 33.0 1.3E+02 0.0029 20.3 4.8 28 81-108 175-202 (268)
403 PRK06382 threonine dehydratase 32.6 2.2E+02 0.0047 21.4 7.3 65 65-129 55-119 (406)
404 PTZ00240 60S ribosomal protein 32.6 1.7E+02 0.0036 21.5 5.3 97 6-109 15-116 (323)
405 PF08490 DUF1744: Domain of un 32.5 2.2E+02 0.0048 21.5 6.6 67 51-118 27-95 (396)
406 PF12321 DUF3634: Protein of u 32.0 45 0.00098 20.3 2.0 22 15-36 72-93 (108)
407 cd00472 Ribosomal_L24e_L24 Rib 31.9 43 0.00093 17.6 1.7 15 81-95 24-38 (54)
408 COG2897 SseA Rhodanese-related 31.7 1.1E+02 0.0024 22.0 4.2 36 80-115 232-268 (285)
409 PF09439 SRPRB: Signal recogni 31.4 1.5E+02 0.0032 19.8 4.5 11 57-67 52-62 (181)
410 cd06272 PBP1_hexuronate_repres 31.4 99 0.0021 20.8 4.0 27 81-107 170-196 (261)
411 PRK10638 glutaredoxin 3; Provi 31.2 99 0.0021 17.1 5.6 39 84-122 3-42 (83)
412 TIGR01753 flav_short flavodoxi 31.0 81 0.0017 19.1 3.2 20 90-109 11-30 (140)
413 PF00006 ATP-synt_ab: ATP synt 31.0 1.8E+02 0.0038 19.9 5.1 38 82-119 69-117 (215)
414 PF06983 3-dmu-9_3-mt: 3-demet 30.9 69 0.0015 19.4 2.8 27 81-107 71-97 (116)
415 cd06317 PBP1_ABC_sugar_binding 30.9 1.7E+02 0.0037 19.7 6.9 36 81-116 56-91 (275)
416 KOG1529|consensus 30.8 1.5E+02 0.0032 21.4 4.7 54 67-120 221-274 (286)
417 TIGR02189 GlrX-like_plant Glut 30.8 1.2E+02 0.0025 17.8 4.7 34 82-115 7-41 (99)
418 COG4555 NatA ABC-type Na+ tran 30.7 1.2E+02 0.0025 21.2 4.0 63 13-90 128-190 (245)
419 PF01565 FAD_binding_4: FAD bi 30.6 1.3E+02 0.0027 18.4 4.0 34 84-117 2-35 (139)
420 PF06792 UPF0261: Uncharacteri 30.5 53 0.0012 24.9 2.6 28 88-115 193-220 (403)
421 PRK02922 glycogen synthesis pr 30.4 23 0.00049 19.5 0.5 33 93-125 10-47 (67)
422 COG2241 CobL Precorrin-6B meth 30.3 1.8E+02 0.004 19.9 5.0 39 65-108 128-166 (210)
423 KOG0780|consensus 30.3 1.2E+02 0.0026 23.2 4.3 35 82-116 100-139 (483)
424 PRK12901 secA preprotein trans 30.3 3E+02 0.0066 24.0 6.9 57 68-126 199-259 (1112)
425 PF03853 YjeF_N: YjeF-related 30.2 1.6E+02 0.0034 19.1 5.0 31 81-111 24-57 (169)
426 PRK07308 flavodoxin; Validated 30.2 81 0.0017 19.6 3.1 21 90-110 14-34 (146)
427 cd01133 F1-ATPase_beta F1 ATP 30.2 2.1E+02 0.0045 20.5 6.2 40 82-121 126-177 (274)
428 PF08544 GHMP_kinases_C: GHMP 30.2 77 0.0017 17.4 2.8 25 82-106 59-83 (85)
429 KOG2340|consensus 30.0 26 0.00057 27.7 0.9 102 14-115 470-585 (698)
430 KOG0385|consensus 29.9 2.2E+02 0.0048 24.0 5.9 45 80-126 215-260 (971)
431 PRK08639 threonine dehydratase 29.8 2.5E+02 0.0054 21.2 6.6 48 82-129 72-119 (420)
432 cd01612 APG12_C Ubiquitin-like 29.8 1.2E+02 0.0026 17.5 6.3 61 52-112 13-80 (87)
433 PRK02399 hypothetical protein; 29.8 58 0.0013 24.7 2.7 34 82-115 185-221 (406)
434 COG1419 FlhF Flagellar GTP-bin 29.7 2.6E+02 0.0056 21.4 6.9 64 55-119 313-378 (407)
435 cd06300 PBP1_ABC_sugar_binding 29.7 1.8E+02 0.0039 19.7 7.1 14 100-113 79-92 (272)
436 PRK13019 clpS ATP-dependent Cl 29.3 1.3E+02 0.0028 17.8 4.6 29 80-108 61-89 (94)
437 PF02603 Hpr_kinase_N: HPr Ser 29.2 90 0.002 19.2 3.1 30 81-110 80-109 (127)
438 TIGR01621 RluA-like pseudourid 28.9 94 0.002 21.1 3.4 36 82-117 54-92 (217)
439 PRK08638 threonine dehydratase 28.7 2.3E+02 0.0051 20.6 7.0 64 65-128 57-120 (333)
440 PRK14455 ribosomal RNA large s 28.6 2.5E+02 0.0053 20.9 6.6 18 90-107 275-292 (356)
441 PRK05928 hemD uroporphyrinogen 28.4 1.4E+02 0.0031 20.0 4.3 28 83-110 125-152 (249)
442 KOG1530|consensus 28.2 1.6E+02 0.0035 18.7 4.0 33 83-115 90-123 (136)
443 smart00596 PRE_C2HC PRE_C2HC d 28.1 27 0.00058 19.4 0.5 26 96-121 2-27 (69)
444 PF07530 PRE_C2HC: Associated 28.0 65 0.0014 17.7 2.1 24 95-118 1-24 (68)
445 PRK09004 FMN-binding protein M 28.0 89 0.0019 19.7 3.0 23 90-112 14-36 (146)
446 PLN00206 DEAD-box ATP-dependen 27.9 2.1E+02 0.0045 22.3 5.5 41 81-121 195-239 (518)
447 CHL00073 chlN photochlorophyll 27.9 2.5E+02 0.0054 21.8 5.7 45 70-114 85-136 (457)
448 PRK14457 ribosomal RNA large s 27.7 2.6E+02 0.0055 20.7 6.0 27 88-114 266-294 (345)
449 TIGR03599 YloV DAK2 domain fus 27.4 3.1E+02 0.0068 21.7 6.7 56 63-118 462-522 (530)
450 PF07015 VirC1: VirC1 protein; 27.4 1.2E+02 0.0027 21.0 3.8 6 66-71 15-20 (231)
451 COG4359 Uncharacterized conser 27.4 94 0.002 21.1 3.1 25 96-120 79-103 (220)
452 PHA02558 uvsW UvsW helicase; P 27.2 2.3E+02 0.005 21.9 5.6 26 81-106 157-182 (501)
453 PRK10423 transcriptional repre 27.2 1.2E+02 0.0027 21.2 4.0 28 81-108 233-260 (327)
454 TIGR01675 plant-AP plant acid 27.1 1.7E+02 0.0037 20.3 4.4 26 83-108 136-163 (229)
455 PRK10339 DNA-binding transcrip 27.1 1.2E+02 0.0025 21.5 3.8 27 82-108 233-259 (327)
456 TIGR02621 cas3_GSU0051 CRISPR- 27.0 1.4E+02 0.003 25.1 4.5 40 81-120 60-127 (844)
457 PRK14456 ribosomal RNA large s 27.0 2.7E+02 0.0059 20.8 6.2 85 18-106 215-307 (368)
458 cd05564 PTS_IIB_chitobiose_lic 26.9 86 0.0019 18.3 2.6 34 85-118 2-39 (96)
459 cd01575 PBP1_GntR Ligand-bindi 26.8 2E+02 0.0044 19.2 5.2 27 81-107 175-201 (268)
460 COG4635 HemG Flavodoxin [Energ 26.6 56 0.0012 21.5 1.9 21 90-110 13-33 (175)
461 cd02557 PseudoU_synth_ScRIB2 P 26.5 1.2E+02 0.0026 20.4 3.6 36 83-118 71-109 (213)
462 PF05822 UMPH-1: Pyrimidine 5' 26.5 48 0.001 23.3 1.7 27 92-118 92-118 (246)
463 PRK14459 ribosomal RNA large s 26.3 2.8E+02 0.0062 20.8 6.1 79 23-105 224-309 (373)
464 TIGR02190 GlrX-dom Glutaredoxi 26.3 1.2E+02 0.0026 16.6 4.2 33 81-113 6-39 (79)
465 KOG0334|consensus 26.3 1.8E+02 0.004 24.9 5.0 48 81-128 437-488 (997)
466 PF09664 DUF2399: Protein of u 26.1 1.9E+02 0.004 18.6 5.6 57 58-120 21-79 (152)
467 PRK11761 cysM cysteine synthas 26.1 2.5E+02 0.0054 20.0 7.8 47 83-129 63-109 (296)
468 PLN03050 pyridoxine (pyridoxam 26.1 1.6E+02 0.0036 20.5 4.3 16 97-112 78-93 (246)
469 TIGR00221 nagA N-acetylglucosa 26.1 2.8E+02 0.0061 20.7 7.2 46 83-128 167-212 (380)
470 cd03029 GRX_hybridPRX5 Glutare 26.1 1.1E+02 0.0025 16.2 3.8 27 85-111 3-30 (72)
471 COG0560 SerB Phosphoserine pho 26.0 76 0.0016 21.5 2.6 28 92-119 79-106 (212)
472 cd01563 Thr-synth_1 Threonine 25.9 2.5E+02 0.0055 20.1 6.9 63 65-128 53-115 (324)
473 PF13684 Dak1_2: Dihydroxyacet 25.9 2.6E+02 0.0057 20.3 6.4 55 63-117 245-304 (313)
474 PF13058 DUF3920: Protein of u 25.9 59 0.0013 19.9 1.8 15 83-97 25-39 (126)
475 cd06383 PBP1_iGluR_AMPA_Like N 25.9 1.4E+02 0.0029 22.1 4.0 38 70-107 173-210 (368)
476 cd01541 PBP1_AraR Ligand-bindi 25.9 1.6E+02 0.0036 19.9 4.3 27 81-107 181-207 (273)
477 TIGR02554 PrgH type III secret 25.9 1.2E+02 0.0027 22.9 3.7 23 82-104 188-210 (389)
478 KOG0071|consensus 25.9 2E+02 0.0042 18.8 5.1 48 51-103 58-108 (180)
479 KOG0090|consensus 25.8 2.3E+02 0.005 19.8 4.7 45 57-103 85-137 (238)
480 COG2984 ABC-type uncharacteriz 25.8 2.8E+02 0.006 20.5 9.8 56 58-114 136-196 (322)
481 cd02977 ArsC_family Arsenate R 25.7 1.2E+02 0.0025 17.7 3.1 20 90-109 7-26 (105)
482 PTZ00424 helicase 45; Provisio 25.7 2.5E+02 0.0054 20.6 5.5 43 81-123 95-141 (401)
483 PTZ00061 DNA-directed RNA poly 25.6 2.3E+02 0.0049 19.4 6.1 16 109-124 98-113 (205)
484 PF14572 Pribosyl_synth: Phosp 25.5 2.1E+02 0.0046 19.2 4.5 36 84-119 4-39 (184)
485 PRK01172 ski2-like helicase; P 25.5 2.1E+02 0.0045 23.1 5.2 47 71-119 56-105 (674)
486 COG4087 Soluble P-type ATPase 25.4 1.9E+02 0.0042 18.5 4.1 42 85-126 46-87 (152)
487 COG3453 Uncharacterized protei 25.4 1.8E+02 0.0039 18.2 5.7 48 52-103 57-108 (130)
488 COG1197 Mfd Transcription-repa 25.3 3.5E+02 0.0077 23.7 6.5 58 68-127 631-692 (1139)
489 PF09480 PrgH: Type III secret 25.3 92 0.002 23.4 3.0 39 66-104 156-200 (375)
490 PRK05476 S-adenosyl-L-homocyst 25.3 2.3E+02 0.005 21.7 5.2 52 64-118 58-109 (425)
491 cd02869 PseudoU_synth_RluCD_li 25.2 1.4E+02 0.0029 19.2 3.6 38 81-118 49-89 (185)
492 PF00106 adh_short: short chai 25.1 1.8E+02 0.0038 18.0 5.9 27 93-119 38-64 (167)
493 TIGR02260 benz_CoA_red_B benzo 25.0 3.1E+02 0.0067 20.8 6.1 53 64-119 336-394 (413)
494 cd01149 HutB Hemin binding pro 25.0 1.6E+02 0.0036 19.7 4.1 31 84-114 59-89 (235)
495 cd06285 PBP1_LacI_like_7 Ligan 25.0 1.5E+02 0.0032 20.0 3.9 28 81-108 173-200 (265)
496 COG1111 MPH1 ERCC4-like helica 24.8 2.8E+02 0.0061 22.0 5.5 46 81-126 57-106 (542)
497 KOG3128|consensus 24.7 1.4E+02 0.0029 21.5 3.5 27 92-118 140-166 (298)
498 cd06288 PBP1_sucrose_transcrip 24.7 1.5E+02 0.0032 20.0 3.9 28 81-108 175-202 (269)
499 PRK14987 gluconate operon tran 24.7 1.4E+02 0.003 21.1 3.9 28 81-108 237-264 (331)
500 PRK00321 rdgC recombination as 24.6 1.4E+02 0.0031 21.6 3.9 40 81-120 132-173 (303)
No 1
>KOG0328|consensus
Probab=99.95 E-value=7e-28 Score=164.72 Aligned_cols=120 Identities=27% Similarity=0.388 Sum_probs=112.7
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-cchHHHHHHHHHhhhcCCCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~ 83 (129)
+|.+.+||..|++++|||+|.++.+....|+.+|+.|.+..++ .+.++++|+|+.++. ++|.+.|++++..+ ...
T Consensus 192 diyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrde-ltlEgIKqf~v~ve~EewKfdtLcdLYd~L---tIt 267 (400)
T KOG0328|consen 192 DIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDE-LTLEGIKQFFVAVEKEEWKFDTLCDLYDTL---TIT 267 (400)
T ss_pred HHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCC-CchhhhhhheeeechhhhhHhHHHHHhhhh---ehh
Confidence 5788999999999999999999999999999999999999888 566899999999988 45999999999975 578
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+++|||||++.++|+.+.|+..++.+.++||+|+|++|++++++|
T Consensus 268 QavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dF 312 (400)
T KOG0328|consen 268 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDF 312 (400)
T ss_pred eEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999987
No 2
>KOG0331|consensus
Probab=99.93 E-value=6.7e-26 Score=166.73 Aligned_cols=128 Identities=57% Similarity=0.876 Sum_probs=115.7
Q ss_pred CChh----hhhccC-CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCC-CcccCCCceEEEEEcCccchHHHHHHHH
Q psy9627 1 MNWA----SRAMTY-KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL-TLSANHNIQQVVEVCAEHEKENKLFGLL 74 (129)
Q Consensus 1 ~g~~----~il~~l-~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~-~~~~~~~i~~~~~~~~~~~k~~~L~~ll 74 (129)
|||+ .|+..+ ++.+|+++||||+|..++.++..|+++|..+.++.. ......++.|.+..|++..|...|..+|
T Consensus 254 mGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL 333 (519)
T KOG0331|consen 254 MGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLL 333 (519)
T ss_pred cccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHH
Confidence 6775 466677 566799999999999999999999999999999866 4457789999999999999999999999
Q ss_pred HhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 75 NDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 75 ~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..+.....+++||||+|++.|++++..|+..+|++.+|||+.+|++|+.+|+.|
T Consensus 334 ~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~F 387 (519)
T KOG0331|consen 334 EDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGF 387 (519)
T ss_pred HHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhc
Confidence 987655678999999999999999999999999999999999999999999987
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.8e-25 Score=166.24 Aligned_cols=125 Identities=33% Similarity=0.540 Sum_probs=112.3
Q ss_pred CChh----hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCc-ccCCCceEEEEEcCccc-hHHHHHHHH
Q psy9627 1 MNWA----SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTL-SANHNIQQVVEVCAEHE-KENKLFGLL 74 (129)
Q Consensus 1 ~g~~----~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~-k~~~L~~ll 74 (129)
|||. .|++.+|+++|+++||||+|+.+.++++.++++|..|.+..... .+..++.|+++.+++.+ |...|..++
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll 268 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL 268 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 5665 46677788999999999999999999999999999999885441 37799999999999876 999999999
Q ss_pred HhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 75 NDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 75 ~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+. ....++||||+|+..|++++..|...|+++..|||+|+|++|.++++.|
T Consensus 269 ~~---~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F 319 (513)
T COG0513 269 KD---EDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKF 319 (513)
T ss_pred hc---CCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHH
Confidence 86 3566899999999999999999999999999999999999999999987
No 4
>KOG0330|consensus
Probab=99.92 E-value=5e-25 Score=155.81 Aligned_cols=120 Identities=25% Similarity=0.346 Sum_probs=113.8
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCc
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENK 84 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 84 (129)
.|++.+|+++|++|||||||.++.++.+.-+.+|..|.+.+.. .+.++++|+|++++..+|..+|..+++.. ..++
T Consensus 227 ~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~---~g~s 302 (476)
T KOG0330|consen 227 YILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYLVYLLNEL---AGNS 302 (476)
T ss_pred HHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchhHHHHHHhh---cCCc
Confidence 4788889999999999999999999999999999999999887 88899999999999999999999999974 4589
Q ss_pred EEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 85 TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+||||||+..+++++-.|+..|+.+..|||+|+|..|..+++.|
T Consensus 303 ~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~F 346 (476)
T KOG0330|consen 303 VIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKF 346 (476)
T ss_pred EEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987
No 5
>KOG0343|consensus
Probab=99.90 E-value=1.4e-23 Score=154.01 Aligned_cols=125 Identities=22% Similarity=0.309 Sum_probs=114.6
Q ss_pred CChh----hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCC-cccCCCceEEEEEcCccchHHHHHHHHH
Q psy9627 1 MNWA----SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLT-LSANHNIQQVVEVCAEHEKENKLFGLLN 75 (129)
Q Consensus 1 ~g~~----~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~-~~~~~~i~~~~~~~~~~~k~~~L~~ll~ 75 (129)
|||. .|+..+|+.|||+|||||-+..+..+++-.+.+|..|.+.... ..+++++.|+|+.|+-.+|++.|+..|+
T Consensus 230 MGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~ 309 (758)
T KOG0343|consen 230 MGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIK 309 (758)
T ss_pred HhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHH
Confidence 6775 5888899999999999999999999999999999999987433 4789999999999999999999999999
Q ss_pred hhhcCCCCcEEEEecccccHHHHHHHHHhc--CceEEEecCCCChhHHHHHHhcC
Q psy9627 76 DISSKDENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 76 ~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
. +...+.|||+.|++.+..+++.+... |++..+|||.|+|..|.++++.|
T Consensus 310 s---hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F 361 (758)
T KOG0343|consen 310 S---HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKF 361 (758)
T ss_pred h---ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHH
Confidence 6 56789999999999999999999874 99999999999999999999877
No 6
>KOG0333|consensus
Probab=99.88 E-value=7.9e-22 Score=144.07 Aligned_cols=111 Identities=33% Similarity=0.539 Sum_probs=105.3
Q ss_pred ceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccc
Q psy9627 14 RQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93 (129)
Q Consensus 14 ~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~ 93 (129)
+|++.||||||+.++.+++.+|.+|+.+.++... ...+.++|.++.++...|...|..+++. ....++|||+|+++
T Consensus 453 rqT~mftatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~---~~~ppiIIFvN~kk 528 (673)
T KOG0333|consen 453 RQTVMFTATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILES---NFDPPIIIFVNTKK 528 (673)
T ss_pred eEEEEEecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHh---CCCCCEEEEEechh
Confidence 8999999999999999999999999999999888 7778999999999999999999999986 35789999999999
Q ss_pred cHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 94 KVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 94 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.|+++++.|.+.|++|..|||+-+|++|+.+|++|
T Consensus 529 ~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~f 563 (673)
T KOG0333|consen 529 GADALAKILEKAGYKVTTLHGGKSQEQRENALADF 563 (673)
T ss_pred hHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999876
No 7
>KOG0332|consensus
Probab=99.87 E-value=7.1e-22 Score=139.43 Aligned_cols=120 Identities=23% Similarity=0.279 Sum_probs=110.2
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-cchHHHHHHHHHhhhcCCCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~ 83 (129)
.|...+|++.|.++||||+...+..++.+.++++..+.+...+ ....+|+|+|+.|+. .+|+..|..++..+ ..+
T Consensus 256 rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~ee-l~L~~IkQlyv~C~~~~~K~~~l~~lyg~~---tig 331 (477)
T KOG0332|consen 256 RIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREE-LALDNIKQLYVLCACRDDKYQALVNLYGLL---TIG 331 (477)
T ss_pred hhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhh-ccccchhhheeeccchhhHHHHHHHHHhhh---hhh
Confidence 4667789999999999999999999999999999999998888 466899999999987 66999999977653 679
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+.||||.|++.|.|++..|.+.|..|.++||+|..++|.++++.|
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~F 376 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRF 376 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987
No 8
>KOG0326|consensus
Probab=99.87 E-value=1.6e-22 Score=140.56 Aligned_cols=120 Identities=24% Similarity=0.364 Sum_probs=111.0
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 83 (129)
..++..+|+.+|+++||||+|-.+..+..++|.+|..|+.-.+- +..++.|+|-.+++..|+..|.-+...+ ...
T Consensus 249 e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL--tl~GvtQyYafV~e~qKvhCLntLfskL---qIN 323 (459)
T KOG0326|consen 249 EKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL--TLKGVTQYYAFVEERQKVHCLNTLFSKL---QIN 323 (459)
T ss_pred HHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhh--hhcchhhheeeechhhhhhhHHHHHHHh---ccc
Confidence 45777889999999999999999999999999999999988654 5679999999999999999998888775 568
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+.||||||..++|.+++...+.|++|.++|+.|-|+.|..++.+|
T Consensus 324 QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdF 368 (459)
T KOG0326|consen 324 QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDF 368 (459)
T ss_pred ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999887
No 9
>KOG0339|consensus
Probab=99.86 E-value=4e-21 Score=140.23 Aligned_cols=125 Identities=34% Similarity=0.545 Sum_probs=111.4
Q ss_pred CChh----hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-cchHHHHHHHHH
Q psy9627 1 MNWA----SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGLLN 75 (129)
Q Consensus 1 ~g~~----~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~ 75 (129)
|||+ +|-+.+.++||+++||||++.+|+.+++.++.+|+.+..+... ..+..|.|.+..|++ ..|+++|..=|.
T Consensus 385 mGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~Kl~wl~~~L~ 463 (731)
T KOG0339|consen 385 MGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEKKLNWLLRHLV 463 (731)
T ss_pred cccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHHHHHHHHHHhh
Confidence 5774 6777789999999999999999999999999999999988766 567889999999988 558899876666
Q ss_pred hhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 76 DISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 76 ~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+ ...+++|||+..+..+++++..|+-.|+.|..+||+|+|.+|.++|..|
T Consensus 464 ~f--~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~f 514 (731)
T KOG0339|consen 464 EF--SSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKF 514 (731)
T ss_pred hh--ccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHH
Confidence 54 4568999999999999999999999999999999999999999999877
No 10
>KOG0342|consensus
Probab=99.86 E-value=2.5e-21 Score=140.26 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=110.8
Q ss_pred CChh----hhhccCCCCceEEEEEecCcHHHHHHHHHhcc-CccEEEeCCCC-cccCCCceEEEEEcCccchHHHHHHHH
Q psy9627 1 MNWA----SRAMTYKPDRQVLMWSATWPREVQKLAEDFLD-SYIQINIGSLT-LSANHNIQQVVEVCAEHEKENKLFGLL 74 (129)
Q Consensus 1 ~g~~----~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~-~~~~i~~~~~~-~~~~~~i~~~~~~~~~~~k~~~L~~ll 74 (129)
|||. .|++.+|+.+|++|||||.|++|+++++..+. +|..|++.+.. ..+.+.+.|.|++++...++..+..+|
T Consensus 245 ~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~L 324 (543)
T KOG0342|consen 245 IGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFL 324 (543)
T ss_pred cccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHH
Confidence 5775 46677899999999999999999999999887 59999876554 257889999999999999988888999
Q ss_pred HhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 75 NDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 75 ~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++- ....++||||.|+..+..+++.|+...++|..|||+++|..|..+...|
T Consensus 325 Kk~--~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F 376 (543)
T KOG0342|consen 325 KKN--IKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEF 376 (543)
T ss_pred HHh--cCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHH
Confidence 864 2338999999999999999999999999999999999999999998776
No 11
>KOG0341|consensus
Probab=99.86 E-value=5.7e-22 Score=140.99 Aligned_cols=123 Identities=33% Similarity=0.461 Sum_probs=111.7
Q ss_pred CChhhhhccC----CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHh
Q psy9627 1 MNWASRAMTY----KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLND 76 (129)
Q Consensus 1 ~g~~~il~~l----~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~ 76 (129)
|||++.++.+ ...||+++||||||.++..+++.-+..|+.|+++... ..+-++.|.+..+..+.|+.+|++-|+.
T Consensus 341 mGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAG-AAsldViQevEyVkqEaKiVylLeCLQK 419 (610)
T KOG0341|consen 341 MGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG-AASLDVIQEVEYVKQEAKIVYLLECLQK 419 (610)
T ss_pred ccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccccc-ccchhHHHHHHHHHhhhhhhhHHHHhcc
Confidence 7898877765 5679999999999999999999999999999999887 5666788887778889999998888875
Q ss_pred hhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 77 ISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 77 ~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
...+++|||..+..++.+.++|--.|..+..+||+-+|++|..++++|
T Consensus 420 ----T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~af 467 (610)
T KOG0341|consen 420 ----TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAF 467 (610)
T ss_pred ----CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999987
No 12
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.86 E-value=1.7e-20 Score=139.16 Aligned_cols=120 Identities=23% Similarity=0.388 Sum_probs=108.2
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 83 (129)
..+++.+|+.+|+++||||+|+.+.++...++.+|..+.+.... ....++|+++.++..+|...|..++.. ..+.
T Consensus 169 ~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~---~~~~ 243 (460)
T PRK11776 169 DAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRLLLH---HQPE 243 (460)
T ss_pred HHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHHHHh---cCCC
Confidence 46777889999999999999999999999999999988887654 345699999999998899999888875 3568
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++||||||++.++.+++.|...|+.+..+||+|++.+|..+++.|
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F 288 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRF 288 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.84 E-value=4e-20 Score=141.27 Aligned_cols=121 Identities=21% Similarity=0.330 Sum_probs=108.9
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 83 (129)
..+++.+|+.+|+++||||+|+.+..+.+.++.+|..+.+.... ...+.+.|.++.+...+|...|..++.. ....
T Consensus 171 ~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~~L~~---~~~~ 246 (629)
T PRK11634 171 ETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVRFLEA---EDFD 246 (629)
T ss_pred HHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHHHHHh---cCCC
Confidence 34677889999999999999999999999999999988887665 5667889999999988999999888875 3568
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++||||+|+..++.+++.|...|+.+..+||+|++.+|..+++.|
T Consensus 247 ~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~F 291 (629)
T PRK11634 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 (629)
T ss_pred CEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877
No 14
>PTZ00110 helicase; Provisional
Probab=99.84 E-value=5.9e-20 Score=138.68 Aligned_cols=124 Identities=50% Similarity=0.752 Sum_probs=109.0
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhcc-CccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLD-SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDE 82 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~-~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 82 (129)
..++..+++++|+++||||+|.+++.+++.++. +|+.+.++........+++|.+..++..+|...|..+++.+.. ..
T Consensus 299 ~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~-~~ 377 (545)
T PTZ00110 299 RKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMR-DG 377 (545)
T ss_pred HHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcc-cC
Confidence 456777788999999999999999999999886 6888888766544567899999988888899999999987632 56
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.++||||+|++.|+.++..|+..|+++..+||+|++++|.++++.|
T Consensus 378 ~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F 423 (545)
T PTZ00110 378 DKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEF 423 (545)
T ss_pred CeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999987
No 15
>KOG0327|consensus
Probab=99.84 E-value=9.8e-21 Score=133.72 Aligned_cols=118 Identities=28% Similarity=0.412 Sum_probs=110.2
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCc
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENK 84 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 84 (129)
++.+.+|++.|++++|||+|+++..+.++++.+|..|.+..++ .+...++|+|+.+..+.|++.|+++.+ ...+
T Consensus 192 ~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~-ltl~gikq~~i~v~k~~k~~~l~dl~~-----~~~q 265 (397)
T KOG0327|consen 192 DIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE-LTLEGIKQFYINVEKEEKLDTLCDLYR-----RVTQ 265 (397)
T ss_pred HHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh-hhhhheeeeeeeccccccccHHHHHHH-----hhhc
Confidence 4666779999999999999999999999999999999999988 567899999999999889999999998 3679
Q ss_pred EEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 85 TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+|||||++.+.++...|...|+.+.++||+|+|.+|..+++.|
T Consensus 266 ~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef 309 (397)
T KOG0327|consen 266 AVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREF 309 (397)
T ss_pred ceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999876
No 16
>KOG0345|consensus
Probab=99.84 E-value=1.3e-20 Score=136.26 Aligned_cols=126 Identities=25% Similarity=0.321 Sum_probs=114.2
Q ss_pred CChh----hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCc-ccCCCceEEEEEcCccchHHHHHHHHH
Q psy9627 1 MNWA----SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTL-SANHNIQQVVEVCAEHEKENKLFGLLN 75 (129)
Q Consensus 1 ~g~~----~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~k~~~L~~ll~ 75 (129)
|||. .||..+|+.|.|.|||||.++++.++.+..+.+|+.|.++.... .+++.+.-+|+.|+...|...|..++.
T Consensus 172 mgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~ 251 (567)
T KOG0345|consen 172 MGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLN 251 (567)
T ss_pred ccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHh
Confidence 6774 68899999999999999999999999999999999999987662 378899999999999999999999998
Q ss_pred hhhcCCCCcEEEEecccccHHHHHHHHHhc--CceEEEecCCCChhHHHHHHhcCC
Q psy9627 76 DISSKDENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 76 ~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
. ....++|||+.||..++..+..+... +.+...+||.|.|.+|..++++|.
T Consensus 252 ~---~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~ 304 (567)
T KOG0345|consen 252 N---NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFR 304 (567)
T ss_pred c---cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHH
Confidence 6 46789999999999999999999775 678999999999999999999884
No 17
>KOG0338|consensus
Probab=99.84 E-value=3.9e-21 Score=140.25 Aligned_cols=121 Identities=22% Similarity=0.270 Sum_probs=110.8
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc---cchHHHHHHHHHhhhcC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE---HEKENKLFGLLNDISSK 80 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~---~~k~~~L~~ll~~~~~~ 80 (129)
.+|++..|+.||++||||||+.++..++.-.++.|+.|.+.+.. .+...+.|.|+++.. .++...|..++...
T Consensus 349 nEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~-~~a~~LtQEFiRIR~~re~dRea~l~~l~~rt--- 424 (691)
T KOG0338|consen 349 NEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNK-DTAPKLTQEFIRIRPKREGDREAMLASLITRT--- 424 (691)
T ss_pred HHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcc-ccchhhhHHHheeccccccccHHHHHHHHHHh---
Confidence 36888889999999999999999999999999999999999888 788899999998864 55788888888764
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
....+|||+.|++.|+++.-.|.-.|++++-|||.++|.+|.++++.|
T Consensus 425 f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kF 472 (691)
T KOG0338|consen 425 FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKF 472 (691)
T ss_pred cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999987
No 18
>KOG0340|consensus
Probab=99.83 E-value=4.2e-20 Score=129.80 Aligned_cols=123 Identities=21% Similarity=0.245 Sum_probs=106.7
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccC--ccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDS--YIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDE 82 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~--~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 82 (129)
.+.+.+|+.||+++||||+++.+.++....... +..+.+.+.. .+.+.+.|.|+.|+...|..+|..+|+.+.....
T Consensus 176 ~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~v-stvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~ 254 (442)
T KOG0340|consen 176 GIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGV-STVETLYQGYILVSIDVKDAYLVHLLRDFENKEN 254 (442)
T ss_pred hhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCC-CchhhhhhheeecchhhhHHHHHHHHhhhhhccC
Confidence 456678999999999999999999887665554 3444454444 7889999999999999999999999998743357
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+.++||+||+..|+.++..|+..++.+.++||.|+|++|..++..|
T Consensus 255 ~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrF 300 (442)
T KOG0340|consen 255 GSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRF 300 (442)
T ss_pred ceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999887
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.82 E-value=3.5e-19 Score=132.15 Aligned_cols=121 Identities=23% Similarity=0.378 Sum_probs=106.6
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 83 (129)
..++..+++.+|+++||||++.++..+...++.+|..+.+.... .....+.+.+..++...|...+..++.. ....
T Consensus 171 ~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~~~---~~~~ 246 (456)
T PRK10590 171 RRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMIGK---GNWQ 246 (456)
T ss_pred HHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHHHc---CCCC
Confidence 45677788999999999999999999999999999888877655 4557888888888888888877777764 3568
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++||||||+..|+.+++.|...|+++..+||+|++.+|..++++|
T Consensus 247 ~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F 291 (456)
T PRK10590 247 QVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADF 291 (456)
T ss_pred cEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987
No 20
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.81 E-value=6.5e-19 Score=133.62 Aligned_cols=120 Identities=24% Similarity=0.370 Sum_probs=104.9
Q ss_pred hhhccCCC--CceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCC
Q psy9627 5 SRAMTYKP--DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDE 82 (129)
Q Consensus 5 ~il~~l~~--~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 82 (129)
.+++.+|. .+|+++||||++..+.++...++++|..+.+.... .....+.|.++.+...+|...|..++.. ...
T Consensus 182 ~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~~L~~ll~~---~~~ 257 (572)
T PRK04537 182 FLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQTLLLGLLSR---SEG 257 (572)
T ss_pred HHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHHHHHHHHhc---ccC
Confidence 45566665 68999999999999999999999998888776655 4557889999988888898888888875 356
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.++||||||++.|+.+++.|...|+++..+||+|++.+|..++++|
T Consensus 258 ~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~F 303 (572)
T PRK04537 258 ARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRF 303 (572)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999987
No 21
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.80 E-value=1.9e-18 Score=127.19 Aligned_cols=120 Identities=22% Similarity=0.247 Sum_probs=103.9
Q ss_pred hhhccCC--CCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCC
Q psy9627 5 SRAMTYK--PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDE 82 (129)
Q Consensus 5 ~il~~l~--~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 82 (129)
.+++.+| ..+|+++||||++..+.+++...+++|..+.+.... ....++.+.++.+...+|...|..+++. ...
T Consensus 180 ~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~---~~~ 255 (423)
T PRK04837 180 WLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQTLIEE---EWP 255 (423)
T ss_pred HHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHHHHHHHHHh---cCC
Confidence 3555666 357899999999999999999999999998887665 5567788888777778898888888875 356
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.++||||||++.|+.+++.|...|+++..+||+|++++|..++++|
T Consensus 256 ~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F 301 (423)
T PRK04837 256 DRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEF 301 (423)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999887
No 22
>KOG0336|consensus
Probab=99.80 E-value=3.2e-19 Score=127.75 Aligned_cols=126 Identities=29% Similarity=0.490 Sum_probs=113.0
Q ss_pred CChhh----hhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHh
Q psy9627 1 MNWAS----RAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLND 76 (129)
Q Consensus 1 ~g~~~----il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~ 76 (129)
|||+- |+--+.|+||+++-|||+|+.+++++..++++|..+.+++.++.....++|.++...+.+|+.....+++.
T Consensus 382 MgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ 461 (629)
T KOG0336|consen 382 MGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVAN 461 (629)
T ss_pred ccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHh
Confidence 67764 44455789999999999999999999999999999999999877778899999877778899888888887
Q ss_pred hhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 77 ISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 77 ~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
. ....++||||..+..|+.|...|.-.||.+.+|||+.+|.+|+.++++|
T Consensus 462 m--s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ 511 (629)
T KOG0336|consen 462 M--SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDF 511 (629)
T ss_pred c--CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhh
Confidence 5 3557999999999999999999999999999999999999999999987
No 23
>KOG0335|consensus
Probab=99.78 E-value=1.3e-18 Score=126.98 Aligned_cols=128 Identities=38% Similarity=0.607 Sum_probs=110.0
Q ss_pred CChhhhhccC----C----CCceEEEEEecCcHHHHHHHHHhccC-ccEEEeCCCCcccCCCceEEEEEcCccchHHHHH
Q psy9627 1 MNWASRAMTY----K----PDRQVLMWSATWPREVQKLAEDFLDS-YIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 71 (129)
Q Consensus 1 ~g~~~il~~l----~----~~~Q~ll~SAT~~~~v~~~~~~~~~~-~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 71 (129)
|||...|+.+ . ..+|+++||||+|.++..++..|+.+ .+.+.++... +...++.|.+..|.+.+|...|+
T Consensus 242 mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg-~~~~ni~q~i~~V~~~~kr~~Ll 320 (482)
T KOG0335|consen 242 MGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG-STSENITQKILFVNEMEKRSKLL 320 (482)
T ss_pred ccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec-cccccceeEeeeecchhhHHHHH
Confidence 5665544443 1 36899999999999999999999986 8888888777 78899999999999999999999
Q ss_pred HHHHhhhcC-CCC-----cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 72 GLLNDISSK-DEN-----KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 72 ~ll~~~~~~-~~~-----~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
.++...... ..+ .++|||.|++.|+.++..|...++++..+||+..|.+|.++++.|+
T Consensus 321 dll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr 384 (482)
T KOG0335|consen 321 DLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFR 384 (482)
T ss_pred HHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhh
Confidence 998754211 123 8999999999999999999999999999999999999999999985
No 24
>KOG4284|consensus
Probab=99.78 E-value=5.7e-19 Score=132.11 Aligned_cols=119 Identities=21% Similarity=0.279 Sum_probs=104.3
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccc--------hHHHHHHHHHh
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHE--------KENKLFGLLND 76 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~--------k~~~L~~ll~~ 76 (129)
.|+..+|..+|++.||||.|..+.+++.++|.+|..|....++ ...-+|+|+++.+++.+ |...|-.++..
T Consensus 191 ~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d-~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ 269 (980)
T KOG4284|consen 191 IIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADD-VQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKS 269 (980)
T ss_pred HHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCC-ceeechhheeeeccCCcchHHHHHHHHHHHHHHHhh
Confidence 4788899999999999999999999999999999999999887 45579999998876632 55555555555
Q ss_pred hhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhc
Q psy9627 77 ISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 77 ~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
+ +..++||||+...+|+.++.+|...|++|.++.|.|+|.+|..+++.
T Consensus 270 i---py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~ 317 (980)
T KOG4284|consen 270 I---PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQ 317 (980)
T ss_pred C---chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHH
Confidence 3 67899999999999999999999999999999999999999998864
No 25
>KOG0334|consensus
Probab=99.77 E-value=7.7e-19 Score=136.21 Aligned_cols=121 Identities=33% Similarity=0.557 Sum_probs=112.7
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcC-ccchHHHHHHHHHhhhcCCCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCA-EHEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~~~~~~~~ 83 (129)
.|++.+++.+|+++||||+|..++.+++..++.|+.|.++... .+...+.|.+..|+ ...|+..|..+|.... ...
T Consensus 538 ~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~--e~~ 614 (997)
T KOG0334|consen 538 RILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGERY--EDG 614 (997)
T ss_pred hHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHHHh--hcC
Confidence 4899999999999999999999999999999999999998666 67889999999999 7889999999998763 478
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++||||.++..|+.+.+.|.+.|+.|..|||+.+|.+|..++++|
T Consensus 615 ~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~df 659 (997)
T KOG0334|consen 615 KTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDF 659 (997)
T ss_pred CEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHH
Confidence 999999999999999999999999999999999999999999987
No 26
>KOG0346|consensus
Probab=99.77 E-value=1.6e-18 Score=124.79 Aligned_cols=122 Identities=19% Similarity=0.230 Sum_probs=111.5
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCc
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENK 84 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 84 (129)
.+.+.+|+..|.+++|||+++++..+-..++++|+.+.....+...++.+.|+++.|++.+|+..+..+++-- --.++
T Consensus 193 ~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~--LI~gK 270 (569)
T KOG0346|consen 193 KLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLR--LIRGK 270 (569)
T ss_pred HHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHH--HhcCc
Confidence 4556679999999999999999999999999999999998888667789999999999999999988888732 35789
Q ss_pred EEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 85 TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+|||+||.++|-++--.|+..||+.+.|.|+|++.-|..+++.|
T Consensus 271 sliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QF 314 (569)
T KOG0346|consen 271 SLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQF 314 (569)
T ss_pred eEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHh
Confidence 99999999999999999999999999999999999999999877
No 27
>KOG0337|consensus
Probab=99.77 E-value=2.2e-18 Score=123.47 Aligned_cols=125 Identities=22% Similarity=0.277 Sum_probs=113.7
Q ss_pred CChh----hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHh
Q psy9627 1 MNWA----SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLND 76 (129)
Q Consensus 1 ~g~~----~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~ 76 (129)
|||. +++.++|..+|+++||||+|..+-+.++..+.+|..|.+.-+. .+.+.+++.+..+...+|..+|+.+++.
T Consensus 179 mgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~il~~ 257 (529)
T KOG0337|consen 179 MGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSILGG 257 (529)
T ss_pred hhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHHHhc
Confidence 5664 5788889999999999999999999999999999999977666 7889999999999999999999999986
Q ss_pred hhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 77 ISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 77 ~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
. ....+++|||.|+..|+.+...|+..|+.+..++|.|++..|...+.+|
T Consensus 258 ~--~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F 307 (529)
T KOG0337|consen 258 R--IKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDF 307 (529)
T ss_pred c--ccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccc
Confidence 5 2457999999999999999999999999999999999999999888877
No 28
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.76 E-value=2.2e-17 Score=121.88 Aligned_cols=119 Identities=22% Similarity=0.312 Sum_probs=101.3
Q ss_pred hhccCCCCceEEEEEecCcH-HHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-cchHHHHHHHHHhhhcCCCC
Q psy9627 6 RAMTYKPDRQVLMWSATWPR-EVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 6 il~~l~~~~Q~ll~SAT~~~-~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~ 83 (129)
+...++..+|+++||||++. .+..+...++++|..+.+.... ....++.|+++.++. ..|...|..+++. ....
T Consensus 171 i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l~~~---~~~~ 246 (434)
T PRK11192 171 IAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHLLKQ---PEVT 246 (434)
T ss_pred HHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHHHhc---CCCC
Confidence 34455677899999999985 5888888888999988887665 566788898888775 6688888787764 3568
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++||||||++.|+.+++.|+..|+++..+||+|++.+|..+++.|
T Consensus 247 ~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f 291 (434)
T PRK11192 247 RSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRL 291 (434)
T ss_pred eEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987
No 29
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.76 E-value=1.6e-17 Score=124.95 Aligned_cols=121 Identities=29% Similarity=0.413 Sum_probs=103.8
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCc
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENK 84 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 84 (129)
+++..+ +.+|+++||||++++++.++..++.++..+.++... .....++|.++.++..+|...|..+++... ...++
T Consensus 293 ~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~-~~~~~ 369 (518)
T PLN00206 293 QIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQ-HFKPP 369 (518)
T ss_pred HHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhc-ccCCC
Confidence 455555 468999999999999999999999999999988766 556778899988988888888888887532 23468
Q ss_pred EEEEecccccHHHHHHHHHh-cCceEEEecCCCChhHHHHHHhcC
Q psy9627 85 TIIFAETKRKVDKITKSIQN-YGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+||||||+..|+.+++.|.. .|+++..+||+|++.+|..+++.|
T Consensus 370 ~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~F 414 (518)
T PLN00206 370 AVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSF 414 (518)
T ss_pred EEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHH
Confidence 99999999999999999975 699999999999999999999987
No 30
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.75 E-value=9.3e-18 Score=130.24 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=86.1
Q ss_pred ceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccc
Q psy9627 14 RQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93 (129)
Q Consensus 14 ~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~ 93 (129)
+|+++||||+|.++.++...++.++..+.+.... ....++.|+ +.++.+.|...+...+........+++||||||++
T Consensus 206 rQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~-l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~ 283 (844)
T TIGR02621 206 LRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKR-LAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVK 283 (844)
T ss_pred ceEEEEecCCCccHHHHHHHHccCCceeeccccc-ccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHH
Confidence 6999999999999999888888888777766544 344566764 45555556655444443322245689999999999
Q ss_pred cHHHHHHHHHhcCceEEEecCCCChhHHH-----HHHhcC
Q psy9627 94 KVDKITKSIQNYGWAAVGIHGDKSQQERD-----YVLKVG 128 (129)
Q Consensus 94 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~-----~~l~~~ 128 (129)
.|+.+++.|+..++ ..|||+|+|.+|. .+++.|
T Consensus 284 ~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~F 321 (844)
T TIGR02621 284 HVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRF 321 (844)
T ss_pred HHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHH
Confidence 99999999999887 8999999999999 677766
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.75 E-value=4.6e-17 Score=121.38 Aligned_cols=120 Identities=24% Similarity=0.328 Sum_probs=103.9
Q ss_pred hhhccCCC--CceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCC
Q psy9627 5 SRAMTYKP--DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDE 82 (129)
Q Consensus 5 ~il~~l~~--~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 82 (129)
.+++.++. .+|+++||||++.++.+++..++.+|..+.+.... ....++.+.++.+...+|...|..++.. ...
T Consensus 260 ~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ll~~---~~~ 335 (475)
T PRK01297 260 QIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDKYKLLYNLVTQ---NPW 335 (475)
T ss_pred HHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhHHHHHHHHHHh---cCC
Confidence 45566653 57999999999999999999999999888877665 4556788888888888898888888875 356
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.++||||++++.|+.+++.|...|+.+..+||++++++|.++++.|
T Consensus 336 ~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~F 381 (475)
T PRK01297 336 ERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGF 381 (475)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999987
No 32
>PTZ00424 helicase 45; Provisional
Probab=99.73 E-value=1.9e-16 Score=115.58 Aligned_cols=121 Identities=26% Similarity=0.370 Sum_probs=102.5
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-cchHHHHHHHHHhhhcCCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGLLNDISSKDE 82 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~ 82 (129)
.++++.+++..|++++|||+|.++..+...++.+|..+.+.... ....++.+.++.++. ..+...+..+++. ...
T Consensus 192 ~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~ 267 (401)
T PTZ00424 192 YDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDE-LTLEGIRQFYVAVEKEEWKFDTLCDLYET---LTI 267 (401)
T ss_pred HHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCC-cccCCceEEEEecChHHHHHHHHHHHHHh---cCC
Confidence 35677888899999999999999999999999998888776655 345678888887765 4466767777664 356
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.++||||+|++.++.+++.|+..++.+..+||+|++.+|..++++|
T Consensus 268 ~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f 313 (401)
T PTZ00424 268 TQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREF 313 (401)
T ss_pred CeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999887
No 33
>KOG0348|consensus
Probab=99.66 E-value=1.6e-16 Score=116.92 Aligned_cols=119 Identities=21% Similarity=0.209 Sum_probs=99.7
Q ss_pred CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCC------------------------CcccCCCceEEEEEcCccch
Q psy9627 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL------------------------TLSANHNIQQVVEVCAEHEK 66 (129)
Q Consensus 11 ~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~------------------------~~~~~~~i~~~~~~~~~~~k 66 (129)
|+.+|.+|+|||+++.|.+++..-+.||+.|..... ....++.+.|+|.+|+..-+
T Consensus 329 p~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLR 408 (708)
T KOG0348|consen 329 PHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLR 408 (708)
T ss_pred cHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchh
Confidence 556899999999999999999999999999882210 01456788999999999999
Q ss_pred HHHHHHHHHhhhc-CCCCcEEEEecccccHHHHHHHHHhc----------------------CceEEEecCCCChhHHHH
Q psy9627 67 ENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY----------------------GWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 67 ~~~L~~ll~~~~~-~~~~~~iVF~nt~~~~~~l~~~L~~~----------------------~~~~~~lhg~~~~~~R~~ 123 (129)
+..|..+|.+... ...+++|||+.+++.+++.++.+... +.++.-|||+|+|++|..
T Consensus 409 LV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts 488 (708)
T KOG0348|consen 409 LVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTS 488 (708)
T ss_pred HHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHH
Confidence 9999988875533 45579999999999999999888532 456899999999999999
Q ss_pred HHhcCC
Q psy9627 124 VLKVGS 129 (129)
Q Consensus 124 ~l~~~~ 129 (129)
+++.||
T Consensus 489 ~f~~Fs 494 (708)
T KOG0348|consen 489 VFQEFS 494 (708)
T ss_pred HHHhhc
Confidence 999986
No 34
>KOG0347|consensus
Probab=99.61 E-value=9e-17 Score=118.53 Aligned_cols=113 Identities=20% Similarity=0.277 Sum_probs=95.7
Q ss_pred CCceEEEEEecCcH---------------------HHHHHHHH-hcc-CccEEEeCCCCcccCCCceEEEEEcCccchHH
Q psy9627 12 PDRQVLMWSATWPR---------------------EVQKLAED-FLD-SYIQINIGSLTLSANHNIQQVVEVCAEHEKEN 68 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~---------------------~v~~~~~~-~~~-~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~ 68 (129)
+.+|++.||||++- .++.++.. .++ .|..|+.++.. .+.+.+....+.|+..+|..
T Consensus 375 ~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ 453 (731)
T KOG0347|consen 375 RQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDL 453 (731)
T ss_pred cccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccce
Confidence 56899999999972 23334333 233 57888888776 67788888999999999998
Q ss_pred HHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 69 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 69 ~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
+|.++|.. .++++|||||+.+.+.+++-+|+..+++...||+.|.|.+|.+.|+.|+
T Consensus 454 ylyYfl~r----yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~ 510 (731)
T KOG0347|consen 454 YLYYFLTR----YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFK 510 (731)
T ss_pred eEEEEEee----cCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHh
Confidence 88888875 6999999999999999999999999999999999999999999999985
No 35
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.51 E-value=1.5e-13 Score=99.12 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=76.5
Q ss_pred CCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc--cchHHHHHHHHHhhhcCCCCcEEEEe
Q psy9627 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE--HEKENKLFGLLNDISSKDENKTIIFA 89 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~--~~k~~~L~~ll~~~~~~~~~~~iVF~ 89 (129)
.+.|++++|||+|+.+.++.......+......... ......|.+..+.. ..+...+..+++.. ...+++||||
T Consensus 154 ~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lVf~ 229 (358)
T TIGR01587 154 NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE--ERRFERHRFIKIESDKVGEISSLERLLEFI--KKGGKIAIIV 229 (358)
T ss_pred cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc--ccccccccceeeccccccCHHHHHHHHHHh--hCCCeEEEEE
Confidence 468999999999988777766553332111111100 01122344433322 35666677777654 3568999999
Q ss_pred cccccHHHHHHHHHhcCc--eEEEecCCCChhHHHHH----HhcC
Q psy9627 90 ETKRKVDKITKSIQNYGW--AAVGIHGDKSQQERDYV----LKVG 128 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~~----l~~~ 128 (129)
||++.|+.+++.|++.+. .+..+||+|++.+|.+. ++.|
T Consensus 230 ~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f 274 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEM 274 (358)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHh
Confidence 999999999999988765 59999999999999764 6655
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=5.1e-13 Score=99.73 Aligned_cols=111 Identities=20% Similarity=0.162 Sum_probs=79.9
Q ss_pred CCCceEEEEEecCcHHHHHHHHHhcc--CccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEE
Q psy9627 11 KPDRQVLMWSATWPREVQKLAEDFLD--SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIF 88 (129)
Q Consensus 11 ~~~~Q~ll~SAT~~~~v~~~~~~~~~--~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF 88 (129)
.++.|++++|||+++.+.+.+...+. +|..+...-. .+++...+... ..+....+...+... ....++|||
T Consensus 160 ~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~----r~nl~~~v~~~-~~~~~~~l~~~l~~~--~~~~~~IIF 232 (470)
T TIGR00614 160 FPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD----RPNLYYEVRRK-TPKILEDLLRFIRKE--FKGKSGIIY 232 (470)
T ss_pred cCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC----CCCcEEEEEeC-CccHHHHHHHHHHHh--cCCCceEEE
Confidence 35789999999999998877766554 4554433222 23443332222 123444455555431 244577999
Q ss_pred ecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 89 AETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 89 ~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
|+|++.|+.+++.|+..|+++..+||+|++.+|..+++.|
T Consensus 233 ~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F 272 (470)
T TIGR00614 233 CPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKF 272 (470)
T ss_pred ECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887
No 37
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.51 E-value=1.6e-13 Score=106.98 Aligned_cols=111 Identities=13% Similarity=0.127 Sum_probs=77.2
Q ss_pred cCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-----------------cchHHHHH
Q psy9627 9 TYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-----------------HEKENKLF 71 (129)
Q Consensus 9 ~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-----------------~~k~~~L~ 71 (129)
.++.++|+++||||++...+ .+..++..|..+ +..+. ..... .+.++..+. ..+...+.
T Consensus 190 ~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~-~~~~~-~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~ 265 (742)
T TIGR03817 190 RYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDG-SPRGA-RTVALWEPPLTELTGENGAPVRRSASAEAADLLA 265 (742)
T ss_pred hcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCC-CCcCc-eEEEEecCCccccccccccccccchHHHHHHHHH
Confidence 34667899999999987755 567777777554 33222 22222 222222221 12344444
Q ss_pred HHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc--------CceEEEecCCCChhHHHHHHhcC
Q psy9627 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNY--------GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 72 ~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+++ ...++||||||++.|+.++..|+.. +.++..+||++.+++|.+++++|
T Consensus 266 ~l~~-----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 266 DLVA-----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred HHHH-----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 5554 3579999999999999999998763 67899999999999999999876
No 38
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.51 E-value=3.9e-13 Score=105.54 Aligned_cols=117 Identities=10% Similarity=0.147 Sum_probs=88.0
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHH-HHHHHHHhhhcCCCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKEN-KLFGLLNDISSKDEN 83 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~~~~~~~ 83 (129)
++++.++++.|+++||||++.+ ....+++++..|.+.... -.++++|+.++..++.. .+...+........+
T Consensus 141 ~i~~~lr~~lqlilmSATl~~~---~l~~~~~~~~~I~~~gr~----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g 213 (812)
T PRK11664 141 DVQQGLRDDLKLLIMSATLDND---RLQQLLPDAPVIVSEGRS----FPVERRYQPLPAHQRFDEAVARATAELLRQESG 213 (812)
T ss_pred HHHHhCCccceEEEEecCCCHH---HHHHhcCCCCEEEecCcc----ccceEEeccCchhhhHHHHHHHHHHHHHHhCCC
Confidence 4556678889999999999865 235677776666655432 24788888777666553 222333333323568
Q ss_pred cEEEEecccccHHHHHHHHHh---cCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++|||||+++.++.+++.|+. .++.+..+||+|++.+|.++++.|
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~ 261 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPA 261 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccc
Confidence 999999999999999999987 588999999999999999999876
No 39
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.51 E-value=3.1e-13 Score=109.01 Aligned_cols=117 Identities=13% Similarity=0.081 Sum_probs=90.2
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 83 (129)
.+.++.+++++|+++||||.++....++...+.++..|...... . ..+++.+....... ....+++.+ ...+
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~-r--~~v~~~~~~~~~~~---~k~~il~el--~r~g 810 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR-R--LAVKTFVREYDSLV---VREAILREI--LRGG 810 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC-C--CCceEEEEecCcHH---HHHHHHHHH--hcCC
Confidence 45677888899999999999888888888888899888765543 2 34555554433211 122333433 2357
Q ss_pred cEEEEecccccHHHHHHHHHhc--CceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+++||||+++.++.+++.|++. ++++..+||+|++.+|.+++++|
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~F 857 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 9999999999999999999887 78999999999999999999987
No 40
>PRK09401 reverse gyrase; Reviewed
Probab=99.51 E-value=1.5e-13 Score=110.98 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=76.1
Q ss_pred CceEEEEEecCcHH-HHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecc
Q psy9627 13 DRQVLMWSATWPRE-VQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAET 91 (129)
Q Consensus 13 ~~Q~ll~SAT~~~~-v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt 91 (129)
.+|+++||||+++. +.. ..+.++..+.++... ....++.|.|+.++ +|...|..+++.+ ..++||||||
T Consensus 268 ~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~-~~~rnI~~~yi~~~--~k~~~L~~ll~~l----~~~~LIFv~t 337 (1176)
T PRK09401 268 KGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPV-FYLRNIVDSYIVDE--DSVEKLVELVKRL----GDGGLIFVPS 337 (1176)
T ss_pred CceEEEEeCCCCccchHH---HHhhccceEEecCcc-cccCCceEEEEEcc--cHHHHHHHHHHhc----CCCEEEEEec
Confidence 68999999999875 443 234556667777665 45678999998776 6777788888753 3589999999
Q ss_pred ccc---HHHHHHHHHhcCceEEEecCCC
Q psy9627 92 KRK---VDKITKSIQNYGWAAVGIHGDK 116 (129)
Q Consensus 92 ~~~---~~~l~~~L~~~~~~~~~lhg~~ 116 (129)
++. |+++++.|+..|+++..+||+|
T Consensus 338 ~~~~~~ae~l~~~L~~~gi~v~~~hg~l 365 (1176)
T PRK09401 338 DKGKEYAEELAEYLEDLGINAELAISGF 365 (1176)
T ss_pred ccChHHHHHHHHHHHHCCCcEEEEeCcH
Confidence 888 9999999999999999999999
No 41
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.51 E-value=3.6e-13 Score=103.72 Aligned_cols=104 Identities=16% Similarity=0.239 Sum_probs=76.5
Q ss_pred CCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc----------cchHHHHHHHHHhhhcCC
Q psy9627 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE----------HEKENKLFGLLNDISSKD 81 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~----------~~k~~~L~~ll~~~~~~~ 81 (129)
+.+|+++||||++++++.+ ..++++|..|.+.. .+...++++++.... ..+... ...+.......
T Consensus 320 ~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g---rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~-l~~L~~~~~~~ 394 (675)
T PHA02653 320 KIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG---GTLFPISEVYVKNKYNPKNKRAYIEEEKKNI-VTALKKYTPPK 394 (675)
T ss_pred hcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC---CcCCCeEEEEeecCcccccchhhhHHHHHHH-HHHHHHhhccc
Confidence 4469999999999998876 67889998888864 333567888765431 122222 23333221123
Q ss_pred CCcEEEEecccccHHHHHHHHHhc--CceEEEecCCCChhH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQE 120 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~ 120 (129)
.+++||||+++++++.+++.|+.. ++++..|||+|++.+
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~e 435 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNID 435 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHH
Confidence 579999999999999999999887 799999999999863
No 42
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.50 E-value=6.4e-13 Score=104.30 Aligned_cols=117 Identities=10% Similarity=0.132 Sum_probs=86.4
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHH-HHHHHHHhhhcCCCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKEN-KLFGLLNDISSKDEN 83 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~~~~~~~ 83 (129)
++.+.++++.|+++||||++.+. ...++.++..|.+.... -.++++|..++..+++. .+...+........+
T Consensus 138 ~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr~----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g 210 (819)
T TIGR01970 138 DVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGRS----FPVEIRYLPLRGDQRLEDAVSRAVEHALASETG 210 (819)
T ss_pred HHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCcc----eeeeeEEeecchhhhHHHHHHHHHHHHHHhcCC
Confidence 34456788899999999999754 45677776666665432 24677887776655432 222223222223468
Q ss_pred cEEEEecccccHHHHHHHHHh---cCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++||||++++.++.+++.|+. .++.+..|||+|++.+|.++++.|
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~ 258 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPD 258 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhc
Confidence 999999999999999999987 479999999999999999999876
No 43
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.49 E-value=6e-13 Score=105.99 Aligned_cols=114 Identities=19% Similarity=0.243 Sum_probs=81.9
Q ss_pred hccCCCCceEEEEEecCcHHHHHHHHHhccC--ccEEEeCCCCcccCCCceEEEEEcCccch-HHHHHHHHHhhhcCCCC
Q psy9627 7 AMTYKPDRQVLMWSATWPREVQKLAEDFLDS--YIQINIGSLTLSANHNIQQVVEVCAEHEK-ENKLFGLLNDISSKDEN 83 (129)
Q Consensus 7 l~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~--~~~i~~~~~~~~~~~~i~~~~~~~~~~~k-~~~L~~ll~~~~~~~~~ 83 (129)
+....+..|++++|||+++.+.+.+...+.. +..+. ... ..+++. |..++...+ ...+..+++.. ....
T Consensus 610 Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf---~RpNL~--y~Vv~k~kk~le~L~~~I~~~--~~~e 681 (1195)
T PLN03137 610 LKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSF---NRPNLW--YSVVPKTKKCLEDIDKFIKEN--HFDE 681 (1195)
T ss_pred HHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-ccc---CccceE--EEEeccchhHHHHHHHHHHhc--ccCC
Confidence 3344467899999999999999877776653 33222 221 224543 333333332 34455555431 2356
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++||||+|++.|+.+++.|...|+++..|||+|++.+|..++++|
T Consensus 682 sgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F 726 (1195)
T PLN03137 682 CGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQW 726 (1195)
T ss_pred CceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988
No 44
>KOG0344|consensus
Probab=99.48 E-value=1.2e-13 Score=102.51 Aligned_cols=119 Identities=24% Similarity=0.276 Sum_probs=104.4
Q ss_pred hhccC-CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-cchHHHHHHHHHhhhcCCCC
Q psy9627 6 RAMTY-KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 6 il~~l-~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~ 83 (129)
|++.. .++-.+-+||||++..+++++...+.++..|.++..+ .....++|..+.|.+ .-|..++..++... -..
T Consensus 313 I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~-sa~~~V~QelvF~gse~~K~lA~rq~v~~g---~~P 388 (593)
T KOG0344|consen 313 IYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRN-SANETVDQELVFCGSEKGKLLALRQLVASG---FKP 388 (593)
T ss_pred HHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecch-hHhhhhhhhheeeecchhHHHHHHHHHhcc---CCC
Confidence 44433 3456788999999999999999999999999999877 567899999999877 55999999999874 578
Q ss_pred cEEEEecccccHHHHHHHH-HhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSI-QNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L-~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+++||+.+.++|..|++.| ...++.+..+||+.++.+|+.+++.|
T Consensus 389 P~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~F 434 (593)
T KOG0344|consen 389 PVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERF 434 (593)
T ss_pred CeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHH
Confidence 9999999999999999999 77899999999999999999999987
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.48 E-value=1e-12 Score=100.53 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=82.9
Q ss_pred ccCCCCceEEEEEecCcHHHHHHHHHhcc--CccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcE
Q psy9627 8 MTYKPDRQVLMWSATWPREVQKLAEDFLD--SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKT 85 (129)
Q Consensus 8 ~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~--~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 85 (129)
+.+| ..+++++|||.++.+...+...+. ++..+. .+. ..+++. +...+..++...+...+.. ....++
T Consensus 158 ~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~---~r~nl~--~~v~~~~~~~~~l~~~l~~---~~~~~~ 227 (591)
T TIGR01389 158 ERFP-QVPRIALTATADAETRQDIRELLRLADANEFI-TSF---DRPNLR--FSVVKKNNKQKFLLDYLKK---HRGQSG 227 (591)
T ss_pred HhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCC---CCCCcE--EEEEeCCCHHHHHHHHHHh---cCCCCE
Confidence 3344 456999999999999887777664 343332 221 123443 3333445666667777764 346799
Q ss_pred EEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 86 IIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 86 iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
||||+|++.|+.+++.|...|+++..+||+|++.+|..+++.|
T Consensus 228 IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F 270 (591)
T TIGR01389 228 IIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDF 270 (591)
T ss_pred EEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877
No 46
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.47 E-value=1.1e-12 Score=100.53 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=80.0
Q ss_pred CCceEEEEEecCcHHHHHHHHHhcc--CccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEe
Q psy9627 12 PDRQVLMWSATWPREVQKLAEDFLD--SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFA 89 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~~~~--~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~ 89 (129)
+..|++++|||.++.+...+...+. +|... ..... .+++. +..+....+...+...+.. ....++||||
T Consensus 173 p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~---r~nl~--~~v~~~~~~~~~l~~~l~~---~~~~~~IIFc 243 (607)
T PRK11057 173 PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD---RPNIR--YTLVEKFKPLDQLMRYVQE---QRGKSGIIYC 243 (607)
T ss_pred CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCC---CCcce--eeeeeccchHHHHHHHHHh---cCCCCEEEEE
Confidence 5689999999999988776655443 45433 32222 23442 2333444455555555543 4568999999
Q ss_pred cccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+|++.|+.+++.|+..|+++..+||+|++.+|..+++.|
T Consensus 244 ~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F 282 (607)
T PRK11057 244 NSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAF 282 (607)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.43 E-value=2.8e-12 Score=101.79 Aligned_cols=117 Identities=10% Similarity=0.051 Sum_probs=86.7
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 83 (129)
.+.++.+++..|+++||||.++....+....+.++..|...+.. . ..+++++....... ....+.+.+ ...+
T Consensus 590 ~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~-R--~~V~t~v~~~~~~~---i~~~i~~el--~~g~ 661 (926)
T TIGR00580 590 KEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED-R--LPVRTFVMEYDPEL---VREAIRREL--LRGG 661 (926)
T ss_pred HHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC-c--cceEEEEEecCHHH---HHHHHHHHH--HcCC
Confidence 45677778889999999998887776666666777777765543 2 24566655432211 111223333 2468
Q ss_pred cEEEEecccccHHHHHHHHHhc--CceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+++||||+++.++++++.|++. ++++..+||+|++.+|.+++++|
T Consensus 662 qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F 708 (926)
T TIGR00580 662 QVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEF 708 (926)
T ss_pred eEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHH
Confidence 9999999999999999999884 78999999999999999999987
No 48
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.42 E-value=4.5e-12 Score=91.71 Aligned_cols=119 Identities=15% Similarity=0.122 Sum_probs=81.2
Q ss_pred hhccCCCCceEEEEEecCcHHHHHHHHHh--ccCccEEEeCC-----C------C-----c-ccCCCceEEEEEcCccch
Q psy9627 6 RAMTYKPDRQVLMWSATWPREVQKLAEDF--LDSYIQINIGS-----L------T-----L-SANHNIQQVVEVCAEHEK 66 (129)
Q Consensus 6 il~~l~~~~Q~ll~SAT~~~~v~~~~~~~--~~~~~~i~~~~-----~------~-----~-~~~~~i~~~~~~~~~~~k 66 (129)
+++..+...+++++|||+++.+.+.+... +..|..+..+. + . . .+.+.+.+.++. ....|
T Consensus 174 ~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 252 (357)
T TIGR03158 174 LIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFK 252 (357)
T ss_pred HHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchh
Confidence 33333445799999999999988887764 44444332222 0 0 0 011367776665 44556
Q ss_pred HHHHHHHHHhhh----cCCCCcEEEEecccccHHHHHHHHHhcC--ceEEEecCCCChhHHHHHH
Q psy9627 67 ENKLFGLLNDIS----SKDENKTIIFAETKRKVDKITKSIQNYG--WAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 67 ~~~L~~ll~~~~----~~~~~~~iVF~nt~~~~~~l~~~L~~~~--~~~~~lhg~~~~~~R~~~l 125 (129)
...+..+++.+. ....+++||||||++.|++++..|+..| +++..+||.+++.+|.+++
T Consensus 253 ~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~ 317 (357)
T TIGR03158 253 EEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM 317 (357)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc
Confidence 655555444331 1245799999999999999999999864 6889999999999998765
No 49
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.38 E-value=4.4e-12 Score=102.72 Aligned_cols=107 Identities=17% Similarity=0.276 Sum_probs=79.3
Q ss_pred ccCCCCce--EEEEEec-CcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCc
Q psy9627 8 MTYKPDRQ--VLMWSAT-WPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENK 84 (129)
Q Consensus 8 ~~l~~~~Q--~ll~SAT-~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 84 (129)
+.+|+++| +++|||| .|..+.. .++.++..+.++... ....++.|.++.+.. +...|..+++.. ..+
T Consensus 259 ~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l----~~~ 328 (1171)
T TIGR01054 259 EAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGS-DTLRNVVDVYVEDED--LKETLLEIVKKL----GTG 328 (1171)
T ss_pred HhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCcc-ccccceEEEEEeccc--HHHHHHHHHHHc----CCC
Confidence 34566666 5668999 5655543 345566667777665 556789998876554 345567777753 368
Q ss_pred EEEEeccc---ccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 85 TIIFAETK---RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 85 ~iVF~nt~---~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+||||||+ +.|+++++.|+..|+++..+||+|++ +++++|
T Consensus 329 ~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~F 371 (1171)
T TIGR01054 329 GIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKF 371 (1171)
T ss_pred EEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHH
Confidence 99999999 99999999999999999999999974 456655
No 50
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.37 E-value=4.7e-12 Score=94.63 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=87.2
Q ss_pred hhhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcC-ccchHHHHHHHHHhhh---
Q psy9627 3 WASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCA-EHEKENKLFGLLNDIS--- 78 (129)
Q Consensus 3 ~~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~~~--- 78 (129)
+-..++.+.+..|.+.+|||+. ..+++++.+-..++.-+ . +. ..++...+++. +.+|++....+.+.-.
T Consensus 362 LI~RLr~l~~~AQ~i~LSATVg-Np~elA~~l~a~lV~y~--~---RP-VplErHlvf~~~e~eK~~ii~~L~k~E~~~~ 434 (830)
T COG1202 362 LIGRLRYLFPGAQFIYLSATVG-NPEELAKKLGAKLVLYD--E---RP-VPLERHLVFARNESEKWDIIARLVKREFSTE 434 (830)
T ss_pred HHHHHHHhCCCCeEEEEEeecC-ChHHHHHHhCCeeEeec--C---CC-CChhHeeeeecCchHHHHHHHHHHHHHHhhh
Confidence 3445667778999999999984 33456655433332221 1 12 23444555666 5789988888886332
Q ss_pred --cCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 79 --SKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 79 --~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
....+|+|||+||+++|++++..|...|+++..||++|+..+|..+=.+|
T Consensus 435 sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F 486 (830)
T COG1202 435 SSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAF 486 (830)
T ss_pred hccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHH
Confidence 13558999999999999999999999999999999999999999887666
No 51
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.37 E-value=5.3e-12 Score=95.28 Aligned_cols=115 Identities=18% Similarity=0.131 Sum_probs=84.4
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhcc--CccEEEeCCCCcccCCCceEEEEEcC-ccchHHHHHHHHHhhhcCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLD--SYIQINIGSLTLSANHNIQQVVEVCA-EHEKENKLFGLLNDISSKD 81 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~--~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~~~~~~ 81 (129)
.+.+.+| +.+++.++||.++.+.+.+...+. ++..+...-+. +|+...+.... ..++..++.. .....
T Consensus 159 ~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR----pNi~~~v~~~~~~~~q~~fi~~----~~~~~ 229 (590)
T COG0514 159 RLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR----PNLALKVVEKGEPSDQLAFLAT----VLPQL 229 (590)
T ss_pred HHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC----chhhhhhhhcccHHHHHHHHHh----hcccc
Confidence 3444555 789999999999999999988776 34344333322 55544444333 2334443222 11245
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.++.||||.|++.|+.+++.|...|+++..|||||+..+|..+-++|
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f 276 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAF 276 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998876
No 52
>PRK14701 reverse gyrase; Provisional
Probab=99.36 E-value=1e-11 Score=102.90 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=80.9
Q ss_pred CCCCce-EEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEE
Q psy9627 10 YKPDRQ-VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIF 88 (129)
Q Consensus 10 l~~~~Q-~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF 88 (129)
+|+.+| .++||||+++.- .....+.++..+.++... ....++.|.|+.++...| ..|..+++.. ..++|||
T Consensus 265 ~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~f~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~----g~~gIVF 336 (1638)
T PRK14701 265 IGNKIGCLIVASATGKAKG--DRVKLYRELLGFEVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL----GKGGLIF 336 (1638)
T ss_pred cCCCccEEEEEecCCCchh--HHHHHhhcCeEEEecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC----CCCeEEE
Confidence 456666 567999998641 122345677778887766 566789999988766656 4677777753 4689999
Q ss_pred ecccccH---HHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 89 AETKRKV---DKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 89 ~nt~~~~---~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
|+|++.+ +++++.|...|+++..+||+ |.+++++|
T Consensus 337 ~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F 374 (1638)
T PRK14701 337 VPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLF 374 (1638)
T ss_pred EeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHH
Confidence 9998864 89999999999999999996 78888776
No 53
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.33 E-value=3e-11 Score=97.89 Aligned_cols=110 Identities=15% Similarity=0.293 Sum_probs=77.9
Q ss_pred CCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccc------hHHHHHHHHHhhhcCCCCcE
Q psy9627 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHE------KENKLFGLLNDISSKDENKT 85 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~------k~~~L~~ll~~~~~~~~~~~ 85 (129)
++.|+++||||++. +.+.+.|.+.| .|.+.... ..++++|..+...+ .+..+...+..+.....+.+
T Consensus 217 pdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdI 289 (1294)
T PRK11131 217 PDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDI 289 (1294)
T ss_pred CCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCE
Confidence 46899999999975 35555554445 46665433 23667777664322 23333333333333467899
Q ss_pred EEEecccccHHHHHHHHHhcCce---EEEecCCCChhHHHHHHhcC
Q psy9627 86 IIFAETKRKVDKITKSIQNYGWA---AVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 86 iVF~nt~~~~~~l~~~L~~~~~~---~~~lhg~~~~~~R~~~l~~~ 128 (129)
|||||++..++.+++.|+..+++ +..+||+|++.+|..+++.+
T Consensus 290 LVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~ 335 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH 335 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc
Confidence 99999999999999999988765 67899999999999998753
No 54
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.30 E-value=1.9e-11 Score=93.60 Aligned_cols=110 Identities=7% Similarity=0.066 Sum_probs=86.1
Q ss_pred eEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEeccccc
Q psy9627 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRK 94 (129)
Q Consensus 15 Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~ 94 (129)
....||||.+...+++...+.-+++.|...... .....+.++.++..+|...|...++... ...+++||||+|++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~-~~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELH-AQGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHH
Confidence 455699999988888888887777766665543 2334556677788889999999887652 245789999999999
Q ss_pred HHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 95 VDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 95 ~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++.+++.|.+.|+++..|||+++++++.-+..+|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag 519 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQDAEEAAIVARAG 519 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHcC
Confidence 9999999999999999999998777766555443
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.20 E-value=2.7e-10 Score=93.65 Aligned_cols=112 Identities=21% Similarity=0.273 Sum_probs=69.8
Q ss_pred CCCCceEEEEEecCcHHHHHHHHHhcc--CccEEEeCCCCcccCCCceEEEEEcCccch----------------H----
Q psy9627 10 YKPDRQVLMWSATWPREVQKLAEDFLD--SYIQINIGSLTLSANHNIQQVVEVCAEHEK----------------E---- 67 (129)
Q Consensus 10 l~~~~Q~ll~SAT~~~~v~~~~~~~~~--~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k----------------~---- 67 (129)
++.+.|++++|||+++ .+++. .++. +|..|...+.. . ...++ .++.+....+ .
T Consensus 156 ~~~~~QrIgLSATI~n-~eevA-~~L~g~~pv~Iv~~~~~-r-~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~ 230 (1490)
T PRK09751 156 LHTSAQRIGLSATVRS-ASDVA-AFLGGDRPVTVVNPPAM-R-HPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIW 230 (1490)
T ss_pred CCCCCeEEEEEeeCCC-HHHHH-HHhcCCCCEEEECCCCC-c-ccceE-EEEecCchhhccccccccccccchhhhhhhh
Confidence 4667899999999986 45544 4443 35555332211 1 12232 2222222111 0
Q ss_pred -HHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcC---------------------------------ceEEEec
Q psy9627 68 -NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG---------------------------------WAAVGIH 113 (129)
Q Consensus 68 -~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~---------------------------------~~~~~lh 113 (129)
.....++..+ ....++||||||++.|+.++..|++.. +.+..+|
T Consensus 231 ~~v~~~il~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HH 308 (1490)
T PRK09751 231 PYIETGILDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHH 308 (1490)
T ss_pred HHHHHHHHHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeecc
Confidence 1112344433 246799999999999999999997531 2367899
Q ss_pred CCCChhHHHHHHhcC
Q psy9627 114 GDKSQQERDYVLKVG 128 (129)
Q Consensus 114 g~~~~~~R~~~l~~~ 128 (129)
|+|++++|..+.++|
T Consensus 309 GsLSkeeR~~IE~~f 323 (1490)
T PRK09751 309 GSVSKEQRAITEQAL 323 (1490)
T ss_pred ccCCHHHHHHHHHHH
Confidence 999999999999876
No 56
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.16 E-value=7.5e-10 Score=90.08 Aligned_cols=110 Identities=14% Similarity=0.249 Sum_probs=77.8
Q ss_pred CCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc------cchHHHHHHHHHhhhcCCCCcE
Q psy9627 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE------HEKENKLFGLLNDISSKDENKT 85 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~------~~k~~~L~~ll~~~~~~~~~~~ 85 (129)
++.|++++|||++. +.+.+.|.+.| .|.+.... -.++.+|..+.. .++...+..++..+.....+.+
T Consensus 210 pdLKlIlmSATld~--~~fa~~F~~ap-vI~V~Gr~----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdI 282 (1283)
T TIGR01967 210 PDLKIIITSATIDP--ERFSRHFNNAP-IIEVSGRT----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDI 282 (1283)
T ss_pred CCCeEEEEeCCcCH--HHHHHHhcCCC-EEEECCCc----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCE
Confidence 57899999999974 45555544444 45555433 124455554432 1344555566655444456899
Q ss_pred EEEecccccHHHHHHHHHhcC---ceEEEecCCCChhHHHHHHhcC
Q psy9627 86 IIFAETKRKVDKITKSIQNYG---WAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 86 iVF~nt~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
|||++++..++.+++.|+..+ +.+..+||+|++.+|.++++.+
T Consensus 283 LVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~ 328 (1283)
T TIGR01967 283 LIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH 328 (1283)
T ss_pred EEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC
Confidence 999999999999999998764 4688999999999999998754
No 57
>KOG0329|consensus
Probab=99.15 E-value=2.7e-11 Score=82.92 Aligned_cols=89 Identities=25% Similarity=0.376 Sum_probs=77.9
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCc
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENK 84 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 84 (129)
+|.+..|...|++.||||++++++...++||.+|..|.+.++.--+..+++|+|+..++..|...|.++++.+ ...+
T Consensus 209 Eifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~L---eFNQ 285 (387)
T KOG0329|consen 209 EIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVL---EFNQ 285 (387)
T ss_pred HHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhh---hhcc
Confidence 5777789999999999999999999999999999999998876446679999999999988888888888864 5789
Q ss_pred EEEEecccccHH
Q psy9627 85 TIIFAETKRKVD 96 (129)
Q Consensus 85 ~iVF~nt~~~~~ 96 (129)
++||+.+..+..
T Consensus 286 VvIFvKsv~Rl~ 297 (387)
T KOG0329|consen 286 VVIFVKSVQRLS 297 (387)
T ss_pred eeEeeehhhhhh
Confidence 999998877744
No 58
>KOG0351|consensus
Probab=99.13 E-value=7.1e-10 Score=87.99 Aligned_cols=114 Identities=14% Similarity=0.158 Sum_probs=85.8
Q ss_pred ccCCCCceEEEEEecCcHHHHHHHHHhcc--CccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcE
Q psy9627 8 MTYKPDRQVLMWSATWPREVQKLAEDFLD--SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKT 85 (129)
Q Consensus 8 ~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~--~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 85 (129)
.+.| ...++..+||.++.+++-+...++ +|..+. .+ -.++|+...+..-...+....+...++.. .+.+.+
T Consensus 416 ~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~-~s---fnR~NL~yeV~~k~~~~~~~~~~~~~~~~--~~~~s~ 488 (941)
T KOG0351|consen 416 IRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK-SS---FNRPNLKYEVSPKTDKDALLDILEESKLR--HPDQSG 488 (941)
T ss_pred hhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec-cc---CCCCCceEEEEeccCccchHHHHHHhhhc--CCCCCe
Confidence 3444 378999999999999998888776 444222 22 23467766665433333333334444432 467899
Q ss_pred EEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 86 IIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 86 iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
||||.++..|+.++..|+..|+.+..||+||+..+|..+-++|
T Consensus 489 IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w 531 (941)
T KOG0351|consen 489 IIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAW 531 (941)
T ss_pred EEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887
No 59
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.08 E-value=1e-09 Score=87.41 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=43.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc------CceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY------GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
...++||||||++.|+.++..|+.. +..+..+||+|++.+|..+.++|
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~f 336 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKL 336 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHH
Confidence 3579999999999999999999872 46899999999999999998876
No 60
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.99 E-value=1e-08 Score=79.88 Aligned_cols=114 Identities=12% Similarity=0.059 Sum_probs=70.4
Q ss_pred ccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEE
Q psy9627 8 MTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTII 87 (129)
Q Consensus 8 ~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iV 87 (129)
...+..+|++++|||..+....+......++..+...+.. ...+.+.++.... + ..+...+.... ....+++|
T Consensus 404 ~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~---r~~i~~~~~~~~~--~-~~~~~~i~~~~-~~g~q~~v 476 (681)
T PRK10917 404 REKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPG---RKPITTVVIPDSR--R-DEVYERIREEI-AKGRQAYV 476 (681)
T ss_pred HhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCC---CCCcEEEEeCccc--H-HHHHHHHHHHH-HcCCcEEE
Confidence 3344568999999997666554433222233333322211 1235554443222 2 22333333221 35679999
Q ss_pred Eeccc--------ccHHHHHHHHHhc--CceEEEecCCCChhHHHHHHhcC
Q psy9627 88 FAETK--------RKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 88 F~nt~--------~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
||++. ..++.+++.|... ++++..+||+|++.+|.+++++|
T Consensus 477 ~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F 527 (681)
T PRK10917 477 VCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAF 527 (681)
T ss_pred EEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 99854 4567788888765 57899999999999999999987
No 61
>PRK00254 ski2-like helicase; Provisional
Probab=98.98 E-value=4e-09 Score=82.60 Aligned_cols=121 Identities=18% Similarity=0.136 Sum_probs=67.7
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCC-ceEEEEEcCcc--chH-HHHHHHHHhhhc
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHN-IQQVVEVCAEH--EKE-NKLFGLLNDISS 79 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~--~k~-~~L~~ll~~~~~ 79 (129)
..++..+++..|++++|||++. .+++.. ++..+......... ..... ..+.+...... .+. ..+..++....
T Consensus 160 e~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~~~rpv-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i- 235 (720)
T PRK00254 160 EMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVSDWRPV-KLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAV- 235 (720)
T ss_pred HHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccCCCCCC-cceeeEecCCeeeccCcchhcchHHHHHHHHHHH-
Confidence 3456667778999999999964 344443 33322111100000 00001 11122222221 111 12222222221
Q ss_pred CCCCcEEEEecccccHHHHHHHHHh---------------------------------cCceEEEecCCCChhHHHHHHh
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQN---------------------------------YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~---------------------------------~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
...+++||||||++.|+.++..|.. ....++.+||+|++.+|..+.+
T Consensus 236 ~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~ 315 (720)
T PRK00254 236 KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIED 315 (720)
T ss_pred HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHH
Confidence 1467999999999999988766632 1235899999999999999988
Q ss_pred cC
Q psy9627 127 VG 128 (129)
Q Consensus 127 ~~ 128 (129)
.|
T Consensus 316 ~F 317 (720)
T PRK00254 316 AF 317 (720)
T ss_pred HH
Confidence 76
No 62
>PRK02362 ski2-like helicase; Provisional
Probab=98.95 E-value=3e-09 Score=83.53 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=41.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc------------------------------------CceEEEecCCCChhHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY------------------------------------GWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~------------------------------------~~~~~~lhg~~~~~~R~~~ 124 (129)
..+++||||+|++.|+.++..|... ...++.+||+|++.+|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 4689999999999999998888542 1368899999999999999
Q ss_pred HhcC
Q psy9627 125 LKVG 128 (129)
Q Consensus 125 l~~~ 128 (129)
.++|
T Consensus 322 e~~F 325 (737)
T PRK02362 322 EDAF 325 (737)
T ss_pred HHHH
Confidence 9887
No 63
>KOG0350|consensus
Probab=98.93 E-value=1.6e-09 Score=79.91 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=99.5
Q ss_pred CCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCC---CCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEE
Q psy9627 10 YKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS---LTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTI 86 (129)
Q Consensus 10 l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~---~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~i 86 (129)
+++..+.++||||++.+...+...-++.|....+.. ...++++.+.|+++.++...|..++..+++. .+..++|
T Consensus 357 ~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~---~k~~r~l 433 (620)
T KOG0350|consen 357 LYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS---NKLNRTL 433 (620)
T ss_pred cCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHH---hhcceEE
Confidence 355668999999999999988888888886666553 2337889999999999999999999999986 4678999
Q ss_pred EEecccccHHHHHHHHH----hcCceEEEecCCCChhHHHHHHhcC
Q psy9627 87 IFAETKRKVDKITKSIQ----NYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 87 VF~nt~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+|+|+...+.+++..|+ ...+++..+.|++++..|.+.+++|
T Consensus 434 cf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f 479 (620)
T KOG0350|consen 434 CFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKF 479 (620)
T ss_pred EEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999997 3467888999999999999999887
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.91 E-value=4e-09 Score=79.55 Aligned_cols=62 Identities=10% Similarity=0.151 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 66 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 66 k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+...+..++..+. ....+++|||++.+.++.+++.|+..|+++..+||+|++.+|.++++.|
T Consensus 329 Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~ 390 (501)
T PHA02558 329 RNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIA 390 (501)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHH
Confidence 3344445554442 2456888888889999999999999999999999999999999988765
No 65
>PRK09694 helicase Cas3; Provisional
Probab=98.91 E-value=4.6e-08 Score=77.73 Aligned_cols=57 Identities=9% Similarity=0.112 Sum_probs=45.1
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcC---ceEEEecCCCChhHH----HHHHhcC
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG---WAAVGIHGDKSQQER----DYVLKVG 128 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R----~~~l~~~ 128 (129)
+..+++.. ...++++|||||.+.|+.+++.|++.+ .++..+||.+.+.+| .++++.|
T Consensus 550 l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~f 613 (878)
T PRK09694 550 LQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENF 613 (878)
T ss_pred HHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 34444433 356799999999999999999998764 689999999999999 4566655
No 66
>PRK01172 ski2-like helicase; Provisional
Probab=98.86 E-value=1.6e-08 Score=78.82 Aligned_cols=48 Identities=10% Similarity=0.267 Sum_probs=41.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc-------------------------CceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY-------------------------GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~-------------------------~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+.+++||||+|++.|+.++..|... ...++.+||+|++++|..+.+.|
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f 307 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHH
Confidence 5689999999999999999988643 12478899999999999998876
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.83 E-value=4.8e-08 Score=76.72 Aligned_cols=109 Identities=10% Similarity=0.089 Sum_probs=76.0
Q ss_pred EEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccH
Q psy9627 16 VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKV 95 (129)
Q Consensus 16 ~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~ 95 (129)
...+|.|....-+++...+ +- ..+.++...+....... ..+.+...+|...+...+.... ....++||||+|++.+
T Consensus 366 l~GmTGTa~t~~~e~~~~Y-~l-~v~~IPt~kp~~r~d~~-~~i~~~~~~K~~al~~~i~~~~-~~~~pvLIf~~t~~~s 441 (790)
T PRK09200 366 LSGMTGTAKTEEKEFFEVY-NM-EVVQIPTNRPIIRIDYP-DKVFVTLDEKYKAVIEEVKERH-ETGRPVLIGTGSIEQS 441 (790)
T ss_pred HhccCCCChHHHHHHHHHh-CC-cEEECCCCCCcccccCC-CeEEcCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHH
Confidence 4567888755445553333 32 23344433322221221 2344566789999888886542 3578999999999999
Q ss_pred HHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 96 DKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 96 ~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++++..|.+.|+++..|||++.+++|..+..+|
T Consensus 442 e~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag 474 (790)
T PRK09200 442 ETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAG 474 (790)
T ss_pred HHHHHHHHHCCCCEEEecCCccHHHHHHHHHcC
Confidence 999999999999999999999999988777664
No 68
>KOG0349|consensus
Probab=98.83 E-value=1.2e-08 Score=74.64 Aligned_cols=117 Identities=23% Similarity=0.295 Sum_probs=85.6
Q ss_pred CCceEEEEEecCcH-HHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-cc-hHHHHHHH---------------
Q psy9627 12 PDRQVLMWSATWPR-EVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HE-KENKLFGL--------------- 73 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~-~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~-k~~~L~~l--------------- 73 (129)
...|..+||||++. ++..+..+.|.=|..+.....+ .+++.+.|.+..+.. -+ -+..|...
T Consensus 399 ~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg 477 (725)
T KOG0349|consen 399 FRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPG 477 (725)
T ss_pred cccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccceeecCCccCccHHHHhhhhccCCcccccccccc
Confidence 35699999999864 4777888888889999988777 566666666554322 11 11111111
Q ss_pred -------------HH------hhhcCCCCcEEEEecccccHHHHHHHHHhc---CceEEEecCCCChhHHHHHHhcCC
Q psy9627 74 -------------LN------DISSKDENKTIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 74 -------------l~------~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
++ .+....-.++||||.|+..|+.+-.++.+. .+.|.++||+..+.+|.+.|+.|+
T Consensus 478 ~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fk 555 (725)
T KOG0349|consen 478 QVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFK 555 (725)
T ss_pred cCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhh
Confidence 11 111235679999999999999999999875 478999999999999999999885
No 69
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.83 E-value=1.1e-08 Score=81.70 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=54.9
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHH-HhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI-QNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L-~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|..+|..+++. ....++||||+++..++.+.+.| ...|+++..+||+|++.+|.++++.|
T Consensus 478 d~Ki~~L~~~L~~---~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 478 DPRVEWLIDFLKS---HRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred CHHHHHHHHHHHh---cCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 4477788888875 35789999999999999999999 56799999999999999999999987
No 70
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.82 E-value=4.9e-08 Score=60.37 Aligned_cols=73 Identities=34% Similarity=0.472 Sum_probs=60.5
Q ss_pred ceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 54 i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+.+.+...+ +.|...+..++.... ...+++||||++.+.++.+.+.|...++++..+||+++..+|..++++|
T Consensus 2 i~~~~~~~~-~~k~~~i~~~i~~~~-~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 74 (131)
T cd00079 2 IKQYVLPVE-DEKLEALLELLKEHL-KKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDF 74 (131)
T ss_pred cEEEEEECC-HHHHHHHHHHHHhcc-cCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHH
Confidence 345555443 378888888887653 2568999999999999999999999999999999999999999998876
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.81 E-value=5.8e-08 Score=75.82 Aligned_cols=110 Identities=7% Similarity=0.028 Sum_probs=77.4
Q ss_pred eEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEeccccc
Q psy9627 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRK 94 (129)
Q Consensus 15 Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~ 94 (129)
....+|.|....-.++... .+- ..+.++...+....... ..+.+....|...+...+.... ...+++||||+|++.
T Consensus 361 kl~GmTGTa~~~~~Ef~~i-Y~l-~v~~IPt~kp~~r~d~~-d~i~~~~~~K~~ai~~~i~~~~-~~~~pvLIft~s~~~ 436 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIET-YSL-SVVKIPTNKPIIRIDYP-DKIYATLPEKLMATLEDVKEYH-ETGQPVLLITGSVEM 436 (762)
T ss_pred hhcccCCCChhHHHHHHHH-hCC-CEEEcCCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHh-hCCCCEEEEECcHHH
Confidence 3456788876555555543 332 23444443311111111 2344567789998888887542 357899999999999
Q ss_pred HHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 95 VDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 95 ~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++.++..|...|+++..|||++.+++|..+..+|
T Consensus 437 se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag 470 (762)
T TIGR03714 437 SEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAG 470 (762)
T ss_pred HHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcC
Confidence 9999999999999999999999999998887765
No 72
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.76 E-value=1.5e-07 Score=72.95 Aligned_cols=110 Identities=15% Similarity=0.054 Sum_probs=65.5
Q ss_pred CceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEeccc
Q psy9627 13 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETK 92 (129)
Q Consensus 13 ~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~ 92 (129)
.+|++++|||..+....+.....-+...+..-+.. ...+...++ ....+...+..+.+.+ ....+++|||++.
T Consensus 386 ~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~---r~~i~~~~~--~~~~~~~~~~~i~~~l--~~g~q~~v~~~~i 458 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPG---RKPITTVLI--KHDEKDIVYEFIEEEI--AKGRQAYVVYPLI 458 (630)
T ss_pred CCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCC---CCceEEEEe--CcchHHHHHHHHHHHH--HhCCcEEEEEccc
Confidence 57999999997654433322111122222211111 123333333 3333322222333332 2467999999876
Q ss_pred --------ccHHHHHHHHHh--cCceEEEecCCCChhHHHHHHhcCC
Q psy9627 93 --------RKVDKITKSIQN--YGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 93 --------~~~~~l~~~L~~--~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
..++.+++.|.. .++++..+||+|++.+|.+++++|.
T Consensus 459 ~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~ 505 (630)
T TIGR00643 459 EESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFR 505 (630)
T ss_pred cccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 456677888875 3789999999999999999999873
No 73
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.74 E-value=2.5e-07 Score=72.74 Aligned_cols=113 Identities=19% Similarity=0.121 Sum_probs=72.6
Q ss_pred hhccCCCCceEEEEEecCcHHHHHHHHHhccC--ccEEEeCCCCcccCCCceEEEEEcCcc---------chHHHHHHHH
Q psy9627 6 RAMTYKPDRQVLMWSATWPREVQKLAEDFLDS--YIQINIGSLTLSANHNIQQVVEVCAEH---------EKENKLFGLL 74 (129)
Q Consensus 6 il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~--~~~i~~~~~~~~~~~~i~~~~~~~~~~---------~k~~~L~~ll 74 (129)
-++.+.++.|.+..|||..+ ..+.++-.... +..|...... ...+..++..... .-...+.+++
T Consensus 176 RL~~l~~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~----k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v 250 (814)
T COG1201 176 RLRELAGDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAA----KKLEIKVISPVEDLIYDEELWAALYERIAELV 250 (814)
T ss_pred HHHhhCcccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccC----CcceEEEEecCCccccccchhHHHHHHHHHHH
Confidence 34444448899999999963 33333333332 4444333222 2334444433222 1223333333
Q ss_pred HhhhcCCCCcEEEEecccccHHHHHHHHHhcC-ceEEEecCCCChhHHHHHHhcC
Q psy9627 75 NDISSKDENKTIIFAETKRKVDKITKSIQNYG-WAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 75 ~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+ .+..++||+||+..+|.++..|++.+ .++...||.++.++|..+=++|
T Consensus 251 ~-----~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~l 300 (814)
T COG1201 251 K-----KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERL 300 (814)
T ss_pred h-----hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHH
Confidence 3 35599999999999999999999987 8999999999999998876543
No 74
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.73 E-value=1.3e-07 Score=74.70 Aligned_cols=108 Identities=6% Similarity=0.030 Sum_probs=76.1
Q ss_pred EEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHH
Q psy9627 17 LMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVD 96 (129)
Q Consensus 17 ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~ 96 (129)
-.+|.|...+-.++...+ +- ..+.++...+....... ..+......|+.++..-+..+. ...+|+||||+|.+.++
T Consensus 383 sGMTGTa~te~~Ef~~iY-~l-~Vv~IPtnkp~~R~d~~-d~v~~t~~~k~~av~~~i~~~~-~~g~PVLVgt~Sie~sE 458 (896)
T PRK13104 383 SGMTGTADTEAYEFQQIY-NL-EVVVIPTNRSMIRKDEA-DLVYLTQADKFQAIIEDVRECG-VRKQPVLVGTVSIEASE 458 (896)
T ss_pred ccCCCCChhHHHHHHHHh-CC-CEEECCCCCCcceecCC-CeEEcCHHHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHH
Confidence 346777765555554444 22 22333333311111111 2333466778888877776543 46789999999999999
Q ss_pred HHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 97 KITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 97 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.++..|.+.|+++..|||++.+.+|.-+.++|
T Consensus 459 ~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag 490 (896)
T PRK13104 459 FLSQLLKKENIKHQVLNAKFHEKEAQIIAEAG 490 (896)
T ss_pred HHHHHHHHcCCCeEeecCCCChHHHHHHHhCC
Confidence 99999999999999999999999999999887
No 75
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.71 E-value=2.5e-07 Score=71.85 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=54.0
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..++..|..-++... ....++||||+|++.++.+++.|...|+++..+||++++.+|.++++.|
T Consensus 425 ~~qi~~Ll~eI~~~~-~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~f 488 (655)
T TIGR00631 425 DGQVDDLLSEIRQRV-ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDL 488 (655)
T ss_pred cchHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHH
Confidence 445666665555432 3568999999999999999999999999999999999999999999876
No 76
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.70 E-value=1.1e-07 Score=73.84 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=53.8
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..++..|..-++... ....++||||+|++.++++++.|...|+++..+||++++.+|..+++.|
T Consensus 429 ~~q~~~L~~~L~~~~-~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f 492 (652)
T PRK05298 429 KGQVDDLLSEIRKRV-AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDL 492 (652)
T ss_pred cccHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHH
Confidence 345556666665442 3567999999999999999999999999999999999999999999876
No 77
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.66 E-value=5.1e-07 Score=67.68 Aligned_cols=65 Identities=14% Similarity=0.258 Sum_probs=53.4
Q ss_pred CccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhc
Q psy9627 62 AEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 62 ~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
+....++.|..-++.-. ....+++|-+-|++.|+.|.++|.+.|+++.++|++.+.-+|.+++++
T Consensus 427 p~~~QvdDL~~EI~~r~-~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIird 491 (663)
T COG0556 427 PTKGQVDDLLSEIRKRV-AKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRD 491 (663)
T ss_pred cCCCcHHHHHHHHHHHH-hcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHH
Confidence 44445555655555432 356899999999999999999999999999999999999999999874
No 78
>KOG0353|consensus
Probab=98.62 E-value=1.4e-07 Score=68.25 Aligned_cols=123 Identities=15% Similarity=0.080 Sum_probs=89.1
Q ss_pred hhhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccc--hHHHHHHHHHhhhcC
Q psy9627 3 WASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHE--KENKLFGLLNDISSK 80 (129)
Q Consensus 3 ~~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~--k~~~L~~ll~~~~~~ 80 (129)
+..|+++-.+...++.++||.+..+..-++..+........... -..+|+...+..-|+.. =.+.+..+++.- .
T Consensus 240 ~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~--fnr~nl~yev~qkp~n~dd~~edi~k~i~~~--f 315 (695)
T KOG0353|consen 240 ALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG--FNRPNLKYEVRQKPGNEDDCIEDIAKLIKGD--F 315 (695)
T ss_pred HHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc--cCCCCceeEeeeCCCChHHHHHHHHHHhccc--c
Confidence 45677777788899999999999888887776653222222221 13467777766655532 233344444421 2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
..+..||||=+++.|+.++..|+..||.+..+|..|.+.+|..+-+.|+
T Consensus 316 ~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~ 364 (695)
T KOG0353|consen 316 AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWI 364 (695)
T ss_pred CCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccc
Confidence 4578999999999999999999999999999999999999987776664
No 79
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.61 E-value=3.7e-07 Score=71.96 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=73.4
Q ss_pred EEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccH
Q psy9627 16 VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKV 95 (129)
Q Consensus 16 ~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~ 95 (129)
...+|.|...+-.++...+ +- ..+.++...+....... ..+.....+|+.++...+.... ...+|+||||+|.+.+
T Consensus 368 l~GmTGTa~te~~E~~~iY-~l-~vv~IPtnkp~~r~d~~-d~i~~t~~~K~~aI~~~I~~~~-~~grpVLIft~Si~~s 443 (830)
T PRK12904 368 LAGMTGTADTEAEEFREIY-NL-DVVVIPTNRPMIRIDHP-DLIYKTEKEKFDAVVEDIKERH-KKGQPVLVGTVSIEKS 443 (830)
T ss_pred hcccCCCcHHHHHHHHHHh-CC-CEEEcCCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHH
Confidence 4457888866555544444 32 22333333211111111 2333466779999888886542 3568999999999999
Q ss_pred HHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 96 DKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 96 ~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+++++.|...|+++..|||+ |.+|+..+.+|
T Consensus 444 e~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~ 474 (830)
T PRK12904 444 ELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQ 474 (830)
T ss_pred HHHHHHHHHCCCceEeccCc--hHHHHHHHHHh
Confidence 99999999999999999996 88899888765
No 80
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.58 E-value=5.8e-07 Score=70.62 Aligned_cols=110 Identities=9% Similarity=0.108 Sum_probs=75.3
Q ss_pred eEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEeccccc
Q psy9627 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRK 94 (129)
Q Consensus 15 Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~ 94 (129)
....+|.|...+-.++...+ +-+ .+.++...+....... ..+......|...+...+.... ....|+||||+|+..
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY-~l~-vv~IPtnkp~~r~d~~-d~i~~t~~~K~~al~~~i~~~~-~~g~pvLI~t~si~~ 452 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIY-NME-VITIPTNRPVIRKDSP-DLLYPTLDSKFNAVVKEIKERH-AKGQPVLVGTVAIES 452 (796)
T ss_pred hhhccCCCCHHHHHHHHHHh-CCC-EEEcCCCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHH-hCCCCEEEEeCcHHH
Confidence 34457888765555454333 322 3334433311111111 2233455678888888876542 467899999999999
Q ss_pred HHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 95 VDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 95 ~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++.++..|.+.|+++..|||++.++++.-+.++|
T Consensus 453 se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag 486 (796)
T PRK12906 453 SERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAG 486 (796)
T ss_pred HHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcC
Confidence 9999999999999999999999988888877665
No 81
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.57 E-value=6.2e-07 Score=69.96 Aligned_cols=107 Identities=8% Similarity=0.092 Sum_probs=71.8
Q ss_pred EEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccH
Q psy9627 16 VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKV 95 (129)
Q Consensus 16 ~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~ 95 (129)
...+|.|...+-.++...+ +-+ .+.++...+....... ..+.....+|+.++...+.... ...+|+||||+|.+.+
T Consensus 343 l~GmTGTa~te~~E~~~iY-~l~-vv~IPtnkp~~R~d~~-d~i~~t~~~k~~ai~~~i~~~~-~~grpvLV~t~si~~s 418 (745)
T TIGR00963 343 LSGMTGTAKTEEEEFEKIY-NLE-VVVVPTNRPVIRKDLS-DLVYKTEEEKWKAVVDEIKERH-AKGQPVLVGTTSVEKS 418 (745)
T ss_pred hhccCCCcHHHHHHHHHHh-CCC-EEEeCCCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHH
Confidence 4457888866555554443 322 2334333311111111 1223345678887776665442 4678999999999999
Q ss_pred HHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 96 DKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 96 ~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+++++.|.+.|+++..|||+ +.+|+..+.+|
T Consensus 419 e~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ 449 (745)
T TIGR00963 419 ELLSNLLKERGIPHNVLNAK--NHEREAEIIAQ 449 (745)
T ss_pred HHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHh
Confidence 99999999999999999999 88888888765
No 82
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.53 E-value=9.5e-07 Score=69.58 Aligned_cols=111 Identities=14% Similarity=0.203 Sum_probs=72.4
Q ss_pred CceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcc--cCCCceEEEEEcCccchH-HHHHHHH-HhhhcCCCCcEEEE
Q psy9627 13 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLS--ANHNIQQVVEVCAEHEKE-NKLFGLL-NDISSKDENKTIIF 88 (129)
Q Consensus 13 ~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~--~~~~i~~~~~~~~~~~k~-~~L~~ll-~~~~~~~~~~~iVF 88 (129)
+..++++|||+|+..++.+...+.....+........ ....+.+..... -.+.. ..+...+ ... ....+++|-
T Consensus 370 g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~kvlvI 446 (733)
T COG1203 370 GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVD-VEDGPQEELIELISEEV--KEGKKVLVI 446 (733)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchh-hhhhhhHhhhhcchhhh--ccCCcEEEE
Confidence 4579999999999999999887775444433311100 001111111110 00110 1122222 222 356899999
Q ss_pred ecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 89 AETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 89 ~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
|||.+.|.+++..|+..+-++..|||.+....|.+.++
T Consensus 447 ~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~ 484 (733)
T COG1203 447 VNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKER 484 (733)
T ss_pred EecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHH
Confidence 99999999999999998778999999999999998876
No 83
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.51 E-value=1.1e-06 Score=69.61 Aligned_cols=109 Identities=8% Similarity=0.084 Sum_probs=75.4
Q ss_pred EEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccH
Q psy9627 16 VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKV 95 (129)
Q Consensus 16 ~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~ 95 (129)
...+|.|...+-.++...+ +- ..+.++...+.......-.++ .....|+.++..-+..+. ...+|+||||+|.+.+
T Consensus 387 L~GMTGTa~te~~Ef~~iY-~l-~Vv~IPTnkp~~R~d~~d~iy-~t~~~K~~Aii~ei~~~~-~~GrpVLV~t~sv~~s 462 (908)
T PRK13107 387 LAGMTGTADTEAFEFQHIY-GL-DTVVVPTNRPMVRKDMADLVY-LTADEKYQAIIKDIKDCR-ERGQPVLVGTVSIEQS 462 (908)
T ss_pred hhcccCCChHHHHHHHHHh-CC-CEEECCCCCCccceeCCCcEE-eCHHHHHHHHHHHHHHHH-HcCCCEEEEeCcHHHH
Confidence 3346777766555554444 22 223333322112112222232 455778888776666553 4678999999999999
Q ss_pred HHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 96 DKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 96 ~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++++..|...|+++..||+++.+.+|.-+.++|
T Consensus 463 e~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag 495 (908)
T PRK13107 463 ELLARLMVKEKIPHEVLNAKFHEREAEIVAQAG 495 (908)
T ss_pred HHHHHHHHHCCCCeEeccCcccHHHHHHHHhCC
Confidence 999999999999999999999999999998887
No 84
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.40 E-value=2.5e-06 Score=68.18 Aligned_cols=106 Identities=10% Similarity=0.123 Sum_probs=72.5
Q ss_pred EEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHH
Q psy9627 17 LMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVD 96 (129)
Q Consensus 17 ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~ 96 (129)
-.++.|...+-.++...+ +-++ +.++...+......... +......|..++...+.... ...+++||||+|+..++
T Consensus 537 aGMTGTA~te~~Ef~~iY-~L~V-v~IPTnrP~~R~D~~d~-vy~t~~eK~~Ali~~I~~~~-~~grpVLIft~Sve~sE 612 (1025)
T PRK12900 537 AGMTGTAETEASEFFEIY-KLDV-VVIPTNKPIVRKDMDDL-VYKTRREKYNAIVLKVEELQ-KKGQPVLVGTASVEVSE 612 (1025)
T ss_pred cccCCCChhHHHHHHHHh-CCcE-EECCCCCCcceecCCCe-EecCHHHHHHHHHHHHHHHh-hCCCCEEEEeCcHHHHH
Confidence 346777766555554443 3222 33333321222222222 33566779999988886542 35789999999999999
Q ss_pred HHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 97 KITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 97 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.++..|...|+++..||+ .|.+|+..+-+|
T Consensus 613 ~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~ 642 (1025)
T PRK12900 613 TLSRMLRAKRIAHNVLNA--KQHDREAEIVAE 642 (1025)
T ss_pred HHHHHHHHcCCCceeecC--CHHHhHHHHHHh
Confidence 999999999999999997 688888888765
No 85
>PRK13766 Hef nuclease; Provisional
Probab=98.33 E-value=1.9e-06 Score=68.21 Aligned_cols=66 Identities=24% Similarity=0.345 Sum_probs=57.9
Q ss_pred cchHHHHHHHHHhhhc-CCCCcEEEEecccccHHHHHHHHHhcCceEEEecCC--------CChhHHHHHHhcCC
Q psy9627 64 HEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD--------KSQQERDYVLKVGS 129 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~-~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~--------~~~~~R~~~l~~~~ 129 (129)
..|+..|.++++.+.. .+..++||||++++.|+.+.+.|...|+++..+||. |++.+|..+++.|.
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 420 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFR 420 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHH
Confidence 5688889999876643 456899999999999999999999999999999987 99999999998873
No 86
>KOG0352|consensus
Probab=98.22 E-value=1.3e-06 Score=64.09 Aligned_cols=114 Identities=15% Similarity=0.072 Sum_probs=77.3
Q ss_pred CCceEEEEEecCcHHHHHHHHHhc--cCccEEEeCCCCcccCCCceEEEEEcCc-cchHHHHHHHHHhhhc---------
Q psy9627 12 PDRQVLMWSATWPREVQKLAEDFL--DSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGLLNDISS--------- 79 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~~~--~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~--------- 79 (129)
+...-+.++||.++++++-+-..+ .+|+.+-.++.- ..|+-.....-+. .+-+..|.+.-.....
T Consensus 175 ~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F---R~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~ 251 (641)
T KOG0352|consen 175 PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF---RDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNK 251 (641)
T ss_pred CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch---hhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCC
Confidence 356678899999999998776654 478766554432 1222111000000 2223333333322110
Q ss_pred -CCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 80 -KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 80 -~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.-.+-.||||.|++.||.++-.|...|+++..||.|+...+|..+-++|
T Consensus 252 K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~W 301 (641)
T KOG0352|consen 252 KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKW 301 (641)
T ss_pred CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHH
Confidence 1236789999999999999999999999999999999999999999887
No 87
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.18 E-value=4.1e-05 Score=61.33 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=81.5
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcC---------ccchHHHHHHHH
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCA---------EHEKENKLFGLL 74 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~L~~ll 74 (129)
...++..+...|+++.|||+.. ..+.+..+........+..+. .+...++.+..-+ ...+...+..+.
T Consensus 223 ~~~~~~~~~~~q~i~~SAT~~n-p~e~~~~l~~~~f~~~v~~~g--~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~ 299 (851)
T COG1205 223 LRRLRRYGSPLQIICTSATLAN-PGEFAEELFGRDFEVPVDEDG--SPRGLRYFVRREPPIRELAESIRRSALAELATLA 299 (851)
T ss_pred HHHHhccCCCceEEEEeccccC-hHHHHHHhcCCcceeeccCCC--CCCCceEEEEeCCcchhhhhhcccchHHHHHHHH
Confidence 3455566778999999999843 455666666666655444433 3344555555545 224444444444
Q ss_pred HhhhcCCCCcEEEEecccccHHHHH----HHHHhcC----ceEEEecCCCChhHHHHHHhcC
Q psy9627 75 NDISSKDENKTIIFAETKRKVDKIT----KSIQNYG----WAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 75 ~~~~~~~~~~~iVF~nt~~~~~~l~----~~L~~~~----~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.... .+.-++|+|+.++..++.+. ..+...+ ..+..++|+|...+|..+..+|
T Consensus 300 ~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~ 360 (851)
T COG1205 300 ALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEF 360 (851)
T ss_pred HHHH-HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHH
Confidence 3322 46789999999999999997 4444445 6799999999999999877654
No 88
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.08 E-value=9e-05 Score=59.08 Aligned_cols=115 Identities=13% Similarity=0.143 Sum_probs=83.2
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-cc-hHHHHHHHHHhhhcCCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HE-KENKLFGLLNDISSKDE 82 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~-k~~~L~~ll~~~~~~~~ 82 (129)
+++...+++-.++.+|||+.. +....++++.-.+.+.... --++-+|..... +. -...+...++.......
T Consensus 187 ~~~~~rr~DLKiIimSATld~---~rfs~~f~~apvi~i~GR~----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~ 259 (845)
T COG1643 187 DLLARRRDDLKLIIMSATLDA---ERFSAYFGNAPVIEIEGRT----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGS 259 (845)
T ss_pred HHHhhcCCCceEEEEecccCH---HHHHHHcCCCCEEEecCCc----cceEEEecCCCCcchhHHHHHHHHHHHhccCCC
Confidence 456677777899999999873 3445567766666666544 234445533333 33 34456666665556678
Q ss_pred CcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHh
Q psy9627 83 NKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
+.++||.+-.+.-+...+.|.+ ..+.+..|||.|+.++-.++++
T Consensus 260 GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~ 307 (845)
T COG1643 260 GSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFE 307 (845)
T ss_pred CCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcC
Confidence 9999999999999999999987 4588999999999999887765
No 89
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=97.86 E-value=5.9e-05 Score=56.43 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=54.5
Q ss_pred cchHHHHHHHHHhhh-cCCCCcEEEEecccccHHHHHHHHHhcCceEE-Eec--------CCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDIS-SKDENKTIIFAETKRKVDKITKSIQNYGWAAV-GIH--------GDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~-~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~-~lh--------g~~~~~~R~~~l~~~ 128 (129)
+.|+..+..+++... ..+..++|||++.++.|+.+.++|...|+.+. .+- .||+|.+-.++++.|
T Consensus 347 HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~F 421 (542)
T COG1111 347 HPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQF 421 (542)
T ss_pred CccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHH
Confidence 568888888887654 34558999999999999999999999988774 333 469999999999887
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.80 E-value=0.00035 Score=53.20 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=28.4
Q ss_pred HHHHHHHHHhc--CceEEEecCCCChhHH--HHHHhcC
Q psy9627 95 VDKITKSIQNY--GWAAVGIHGDKSQQER--DYVLKVG 128 (129)
Q Consensus 95 ~~~l~~~L~~~--~~~~~~lhg~~~~~~R--~~~l~~~ 128 (129)
.+++.+.|++. +.++..+|+++.+.++ +++++.|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f 308 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQF 308 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHH
Confidence 57888999876 8899999999988766 7777766
No 91
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.73 E-value=9.1e-05 Score=60.28 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=58.6
Q ss_pred CccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 62 AEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 62 ~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
....|+..|..++..+. ....++|||+......+.+.++|...|++...|+|+++..+|..+++.|
T Consensus 468 e~SgKl~lLdkLL~~Lk-~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~F 533 (1033)
T PLN03142 468 ENSGKMVLLDKLLPKLK-ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAF 533 (1033)
T ss_pred hhhhHHHHHHHHHHHHH-hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHh
Confidence 34568888888888764 3567999999999999999999999999999999999999999999988
No 92
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.64 E-value=0.0001 Score=58.00 Aligned_cols=59 Identities=22% Similarity=0.141 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|+..+..+++.. .....++||||++.+.++.++..|. +..+||++++.+|.+++++|
T Consensus 479 p~K~~~~~~Li~~h-e~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~F 537 (732)
T TIGR00603 479 PNKFRACQFLIRFH-EQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNF 537 (732)
T ss_pred hHHHHHHHHHHHHH-hhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHH
Confidence 34566666666542 1356799999999999999988873 45699999999999999988
No 93
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.63 E-value=0.00075 Score=52.39 Aligned_cols=108 Identities=15% Similarity=0.159 Sum_probs=67.0
Q ss_pred CceEEEEEecCcHHHHHHHHHhccC--ccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEec
Q psy9627 13 DRQVLMWSATWPREVQKLAEDFLDS--YIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAE 90 (129)
Q Consensus 13 ~~Q~ll~SAT~~~~v~~~~~~~~~~--~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~n 90 (129)
.+..+.+|||- -.+-++-..+.| -..|+--+.. + .-|.-+.+ +.+.+...+..+-+.+ ....++.+-|+
T Consensus 411 ~Ph~LvMTATP--IPRTLAlt~fgDldvS~IdElP~G-R--kpI~T~~i--~~~~~~~v~e~i~~ei--~~GrQaY~VcP 481 (677)
T COG1200 411 NPHVLVMTATP--IPRTLALTAFGDLDVSIIDELPPG-R--KPITTVVI--PHERRPEVYERIREEI--AKGRQAYVVCP 481 (677)
T ss_pred CCcEEEEeCCC--chHHHHHHHhccccchhhccCCCC-C--CceEEEEe--ccccHHHHHHHHHHHH--HcCCEEEEEec
Confidence 46899999993 234444444443 2222211111 1 22333443 3344444444555555 36789999996
Q ss_pred ccc--------cHHHHHHHHHhc--CceEEEecCCCChhHHHHHHhcCC
Q psy9627 91 TKR--------KVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 91 t~~--------~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
-.+ .|+.+++.|+.. +++++.+||.|...+++++|.+|+
T Consensus 482 LIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk 530 (677)
T COG1200 482 LIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFK 530 (677)
T ss_pred cccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHH
Confidence 543 566788888743 678999999999999999999984
No 94
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.62 E-value=0.0038 Score=46.73 Aligned_cols=115 Identities=13% Similarity=0.139 Sum_probs=81.8
Q ss_pred CceEEEEEecCcHHHHHHHHHhccCc---cEEEeCCC--C--cccCCCceEEEEEcCccc-------hHHHHH-HHHHhh
Q psy9627 13 DRQVLMWSATWPREVQKLAEDFLDSY---IQINIGSL--T--LSANHNIQQVVEVCAEHE-------KENKLF-GLLNDI 77 (129)
Q Consensus 13 ~~Q~ll~SAT~~~~v~~~~~~~~~~~---~~i~~~~~--~--~~~~~~i~~~~~~~~~~~-------k~~~L~-~ll~~~ 77 (129)
-||+++||+..++++..+....+.+. +.+..... . ..+...++|.+.+.+..+ ++.+.. .++..+
T Consensus 215 ~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l 294 (442)
T PF06862_consen 215 YRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQL 294 (442)
T ss_pred eeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHh
Confidence 38999999999999999999866542 22322222 1 145678899988755422 444433 244444
Q ss_pred h-cCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhc
Q psy9627 78 S-SKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 78 ~-~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
. ....+.+|||++|=-.=-++-.+|++.++..+.+|--.++.+-..+-..
T Consensus 295 ~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~ 345 (442)
T PF06862_consen 295 KRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQ 345 (442)
T ss_pred hhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHH
Confidence 4 3466899999999888888999999999999999988888775554443
No 95
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.53 E-value=0.0012 Score=52.69 Aligned_cols=112 Identities=14% Similarity=0.201 Sum_probs=65.3
Q ss_pred CceEEEEEecCcHHHHHHHHHhcc-CccEEEeCCCCcccCCCceEEEEEcCccch-------HHHHHHHHHhhhcCCCCc
Q psy9627 13 DRQVLMWSATWPREVQKLAEDFLD-SYIQINIGSLTLSANHNIQQVVEVCAEHEK-------ENKLFGLLNDISSKDENK 84 (129)
Q Consensus 13 ~~Q~ll~SAT~~~~v~~~~~~~~~-~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k-------~~~L~~ll~~~~~~~~~~ 84 (129)
..|++..|||+|.- .+++. +++ ++..............-..+.++......| ...+..++..+ ...++
T Consensus 180 ~~rivgLSATlpN~-~evA~-wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~q 255 (766)
T COG1204 180 LIRIVGLSATLPNA-EEVAD-WLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQ 255 (766)
T ss_pred ceEEEEEeeecCCH-HHHHH-HhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHH--hcCCe
Confidence 36999999999743 33333 333 333222222221112223334443333232 23333444443 46789
Q ss_pred EEEEecccccHHHHHHHHHhc-------------------------------------CceEEEecCCCChhHHHHHHhc
Q psy9627 85 TIIFAETKRKVDKITKSIQNY-------------------------------------GWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~-------------------------------------~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
++|||+|++.+...+..+... -..++..|++|+.++|..+=+.
T Consensus 256 vLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~ 335 (766)
T COG1204 256 VLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDA 335 (766)
T ss_pred EEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHH
Confidence 999999999999999998720 1135678999999998876555
Q ss_pred C
Q psy9627 128 G 128 (129)
Q Consensus 128 ~ 128 (129)
|
T Consensus 336 F 336 (766)
T COG1204 336 F 336 (766)
T ss_pred H
Confidence 4
No 96
>KOG0922|consensus
Probab=97.47 E-value=0.0029 Score=49.00 Aligned_cols=109 Identities=11% Similarity=0.217 Sum_probs=72.3
Q ss_pred CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccch-HHHHHHHHHhhhcCCCCcEEEEe
Q psy9627 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEK-ENKLFGLLNDISSKDENKTIIFA 89 (129)
Q Consensus 11 ~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k-~~~L~~ll~~~~~~~~~~~iVF~ 89 (129)
.++-.+++.|||+. -+....|++....+.+.... --++..|..-+..+= ...+.-+++....++++-++||.
T Consensus 193 R~~LklIimSATld---a~kfS~yF~~a~i~~i~GR~----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFL 265 (674)
T KOG0922|consen 193 RPDLKLIIMSATLD---AEKFSEYFNNAPILTIPGRT----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFL 265 (674)
T ss_pred CCCceEEEEeeeec---HHHHHHHhcCCceEeecCCC----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEe
Confidence 44568999999987 33455667765556666543 133444444333332 23344444433457889999999
Q ss_pred cccccHHHHHHHHHhc--Cc------eEEEecCCCChhHHHHHHh
Q psy9627 90 ETKRKVDKITKSIQNY--GW------AAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~--~~------~~~~lhg~~~~~~R~~~l~ 126 (129)
+.+++.+.+++.|.+. .. -+..+||.|+.++-.++++
T Consensus 266 tGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~ 310 (674)
T KOG0922|consen 266 TGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFD 310 (674)
T ss_pred CCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcccc
Confidence 9999999999999764 11 2467999999998777654
No 97
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.36 E-value=0.0052 Score=48.54 Aligned_cols=35 Identities=9% Similarity=0.141 Sum_probs=28.7
Q ss_pred cHHHHHHHHHhc--CceEEEecCCCCh--hHHHHHHhcC
Q psy9627 94 KVDKITKSIQNY--GWAAVGIHGDKSQ--QERDYVLKVG 128 (129)
Q Consensus 94 ~~~~l~~~L~~~--~~~~~~lhg~~~~--~~R~~~l~~~ 128 (129)
.++++++.|++. +.++..+||++.+ .+|++++++|
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f 476 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQF 476 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHH
Confidence 456888888876 8899999999975 5688888876
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.27 E-value=0.0037 Score=51.29 Aligned_cols=117 Identities=11% Similarity=0.071 Sum_probs=86.6
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 83 (129)
+|-++.+..+--++-+|||-=|...++.-..+++-..|..++.+ +. .|+-++. +.++.. .--.+++++ ...+
T Consensus 733 KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~-R~--pV~T~V~--~~d~~~-ireAI~REl--~RgG 804 (1139)
T COG1197 733 KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED-RL--PVKTFVS--EYDDLL-IREAILREL--LRGG 804 (1139)
T ss_pred HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC-Cc--ceEEEEe--cCChHH-HHHHHHHHH--hcCC
Confidence 46788888888999999996566667777777887777777765 32 2333332 332221 122344444 3578
Q ss_pred cEEEEecccccHHHHHHHHHhc--CceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
|+..-+|..+.-+.+++.|+.. ...++..||.|+..+=+++|.+|
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F 851 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDF 851 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHH
Confidence 9999999999999999999885 56799999999999999999887
No 99
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.13 E-value=0.003 Score=51.30 Aligned_cols=100 Identities=21% Similarity=0.248 Sum_probs=68.0
Q ss_pred CCceEEEEEecCcHHH-HH-HHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEe
Q psy9627 12 PDRQVLMWSATWPREV-QK-LAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFA 89 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v-~~-~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~ 89 (129)
+..+.+..|||..+.- +. +.+..++ ..++... ....||.+.|+..+...| ...+++.+ ..-.|||+
T Consensus 275 k~g~LvvsSATg~~rg~R~~LfReLlg----FevG~~~-~~LRNIvD~y~~~~~~e~---~~elvk~l----G~GgLIfV 342 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLFRELLG----FEVGSGG-EGLRNIVDIYVESESLEK---VVELVKKL----GDGGLIFV 342 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHHHHHhC----CccCccc-hhhhheeeeeccCccHHH---HHHHHHHh----CCCeEEEE
Confidence 3468999999986542 22 3344333 3445444 344677777766533333 44566654 34899999
Q ss_pred cc---cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 90 ET---KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 90 nt---~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+. ++.+++++++|+..|+++..+|++- .+.+++|
T Consensus 343 ~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~-----~~~le~F 379 (1187)
T COG1110 343 PIDYGREKAEELAEYLRSHGINAELIHAEK-----EEALEDF 379 (1187)
T ss_pred EcHHhHHHHHHHHHHHHhcCceEEEeeccc-----hhhhhhh
Confidence 99 9999999999999999999999953 3445554
No 100
>KOG0951|consensus
Probab=97.06 E-value=0.0055 Score=50.89 Aligned_cols=113 Identities=13% Similarity=0.172 Sum_probs=71.2
Q ss_pred CceEEEEEecCcHHHHHHHHHhcc-CccEEEeCCCCcccCCCceEEEEEcCccc---hHHHHHHHH-Hhhh-cCCCCcEE
Q psy9627 13 DRQVLMWSATWPREVQKLAEDFLD-SYIQINIGSLTLSANHNIQQVVEVCAEHE---KENKLFGLL-NDIS-SKDENKTI 86 (129)
Q Consensus 13 ~~Q~ll~SAT~~~~v~~~~~~~~~-~~~~i~~~~~~~~~~~~i~~~~~~~~~~~---k~~~L~~ll-~~~~-~~~~~~~i 86 (129)
....+.+|||+|.= +-+..|+. ++.-+-..+...+ +.-++|.|+-+...+ +...+.++. +++. ..+.+++|
T Consensus 474 ~~RlVGLSATLPNy--~DV~~Fl~v~~~glf~fd~syR-pvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVL 550 (1674)
T KOG0951|consen 474 GSRLVGLSATLPNY--EDVASFLRVDPEGLFYFDSSYR-PVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVL 550 (1674)
T ss_pred CceeeeecccCCch--hhhHHHhccCcccccccCcccC-cCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 56789999999842 22333333 3332332222223 356788888776644 344444333 3332 24669999
Q ss_pred EEecccccHHHHHHHHHh-------------------------------------cCceEEEecCCCChhHHHHHHhcC
Q psy9627 87 IFAETKRKVDKITKSIQN-------------------------------------YGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 87 VF~nt~~~~~~l~~~L~~-------------------------------------~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
||+.+++.+-+.|..++. ..+.++..|.||+..+|..+=+.|
T Consensus 551 VFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf 629 (1674)
T KOG0951|consen 551 VFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLF 629 (1674)
T ss_pred EEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHH
Confidence 999999988887777651 134578899999999998776554
No 101
>KOG0354|consensus
Probab=96.90 E-value=0.0032 Score=49.61 Aligned_cols=65 Identities=28% Similarity=0.305 Sum_probs=50.7
Q ss_pred cchHHHHHHHHHhhhc-CCCCcEEEEecccccHHHHHHHHHh---cCceEEEecC--------CCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQN---YGWAAVGIHG--------DKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~-~~~~~~iVF~nt~~~~~~l~~~L~~---~~~~~~~lhg--------~~~~~~R~~~l~~~ 128 (129)
+.|+..|.+.+..... .+..++||||.++..|+.+..+|.. .|++...+-| +|+|++-.++|++|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~F 470 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKF 470 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHH
Confidence 6688888877754433 4558999999999999999999972 3455555544 69999999999987
No 102
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=96.90 E-value=0.0008 Score=37.90 Aligned_cols=29 Identities=41% Similarity=0.460 Sum_probs=26.6
Q ss_pred HHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 100 KSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 100 ~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++|+..|+++..+||++++.+|..+++.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f 29 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKF 29 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHH
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 36888999999999999999999999876
No 103
>KOG1002|consensus
Probab=96.85 E-value=0.0015 Score=49.38 Aligned_cols=69 Identities=23% Similarity=0.296 Sum_probs=57.4
Q ss_pred cCccchHHHHHHHHHhhhcCCC-CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 61 CAEHEKENKLFGLLNDISSKDE-NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 61 ~~~~~k~~~L~~ll~~~~~~~~-~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
.....|+++|.+-|.-+...+. -+.|||-.-....+.+.=.|.+.|+.|..|-|+|++.+|..+++.|+
T Consensus 616 ~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~ 685 (791)
T KOG1002|consen 616 WQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFK 685 (791)
T ss_pred hcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhc
Confidence 3446688888766654433333 59999999899999999999999999999999999999999999985
No 104
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=96.81 E-value=0.0017 Score=36.32 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=29.0
Q ss_pred HHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 97 KITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 97 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+++.|+..++++..+||++++.+|.++++.|
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 33 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKF 33 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHH
Confidence 57788888899999999999999999999876
No 105
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=96.75 E-value=0.01 Score=34.34 Aligned_cols=38 Identities=8% Similarity=0.246 Sum_probs=33.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
+..++++||++...+...+..|+..|+.+..+.|+++.
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~~ 87 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYKT 87 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHHH
Confidence 45789999999888999999999999999999999854
No 106
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.71 E-value=0.01 Score=48.11 Aligned_cols=56 Identities=9% Similarity=0.156 Sum_probs=38.3
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHhcC
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+...+..+....+++++||++|.+..+.+++.|.. .++++ +..+.+ ..|.++++.|
T Consensus 662 ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F 721 (850)
T TIGR01407 662 IASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRF 721 (850)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHH
Confidence 44444444334678999999999999999999975 34443 333333 4677777765
No 107
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=96.66 E-value=0.012 Score=34.77 Aligned_cols=38 Identities=8% Similarity=0.226 Sum_probs=34.1
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
+..+++|+|++-.++...+..|+..|+.+..+.|++..
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 97 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMKA 97 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHHh
Confidence 45789999999999999999999999999999999864
No 108
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=96.66 E-value=0.0065 Score=45.61 Aligned_cols=47 Identities=28% Similarity=0.376 Sum_probs=44.1
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
...+++|||.+...++.++..+...|+ +..+.|+.++.+|..+++.|
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHH
Confidence 357999999999999999999999888 99999999999999999887
No 109
>KOG0948|consensus
Probab=96.55 E-value=0.019 Score=45.65 Aligned_cols=100 Identities=11% Similarity=0.140 Sum_probs=61.5
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHH--HHHHhccCccEEEeCCCCcccCCCceEEEEE---------cCccc-----hH
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQK--LAEDFLDSYIQINIGSLTLSANHNIQQVVEV---------CAEHE-----KE 67 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~--~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~---------~~~~~-----k~ 67 (129)
++-|=.+|++-..+++|||+|...+. ++...-..|.+|.-++-.+ --++|+.+. +.... .+
T Consensus 257 EETIIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRP---TPLQHyifP~ggdGlylvVDek~~FrednF 333 (1041)
T KOG0948|consen 257 EETIILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRP---TPLQHYIFPAGGDGLYLVVDEKGKFREDNF 333 (1041)
T ss_pred eeeEEeccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCC---CcceeeeecCCCCeeEEEEecccccchHHH
Confidence 44455578888999999999877553 2222333688777665442 234555333 22211 11
Q ss_pred H-----------------------------------HHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcC
Q psy9627 68 N-----------------------------------KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG 106 (129)
Q Consensus 68 ~-----------------------------------~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~ 106 (129)
. .+..+++.+...+..++|||+=+++.|+.++..+.+..
T Consensus 334 ~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kld 407 (1041)
T KOG0948|consen 334 QKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLD 407 (1041)
T ss_pred HHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCc
Confidence 1 12233333333466799999999999999999987654
No 110
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=96.41 E-value=0.035 Score=44.86 Aligned_cols=100 Identities=7% Similarity=0.029 Sum_probs=63.4
Q ss_pred EEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccH
Q psy9627 16 VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKV 95 (129)
Q Consensus 16 ~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~ 95 (129)
...+|.|...+-.++...+ + -..+.++...+....... ..+......|+.++..-+.... ...+|+||.|.|.+.+
T Consensus 364 LsGMTGTA~te~~Ef~~iY-~-l~Vv~IPTnkP~~R~D~~-d~iy~t~~~K~~Aii~ei~~~~-~~gqPVLVgT~SIe~S 439 (925)
T PRK12903 364 LSGMTGTAKTEEQEFIDIY-N-MRVNVVPTNKPVIRKDEP-DSIFGTKHAKWKAVVKEVKRVH-KKGQPILIGTAQVEDS 439 (925)
T ss_pred hhccCCCCHHHHHHHHHHh-C-CCEEECCCCCCeeeeeCC-CcEEEcHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHH
Confidence 3456777655555554433 2 222333333211111111 1333466778877766665543 4678999999999999
Q ss_pred HHHHHHHHhcCceEEEecCCCChh
Q psy9627 96 DKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 96 ~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
+.++..|.+.|++...|+..-..+
T Consensus 440 E~ls~~L~~~gi~h~vLNAk~~e~ 463 (925)
T PRK12903 440 ETLHELLLEANIPHTVLNAKQNAR 463 (925)
T ss_pred HHHHHHHHHCCCCceeecccchhh
Confidence 999999999999999999974433
No 111
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=96.31 E-value=0.065 Score=42.66 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=66.1
Q ss_pred EEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccH
Q psy9627 16 VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKV 95 (129)
Q Consensus 16 ~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~ 95 (129)
...++.|.....+++...+ +-+ .+.++...+.........++ .....|+..+..-+.... ...+|+||.|.|.+..
T Consensus 365 LsGMTGTa~t~~~Ef~~iY-~l~-Vv~IPtnkp~~R~d~~d~iy-~t~~~k~~Aii~ei~~~~-~~GrPVLVgt~sI~~S 440 (764)
T PRK12326 365 VCGMTGTAVAAGEQLRQFY-DLG-VSVIPPNKPNIREDEADRVY-ATAAEKNDAIVEHIAEVH-ETGQPVLVGTHDVAES 440 (764)
T ss_pred heeecCCChhHHHHHHHHh-CCc-EEECCCCCCceeecCCCceE-eCHHHHHHHHHHHHHHHH-HcCCCEEEEeCCHHHH
Confidence 4567888866665554444 333 33444333222222222333 345667777766665442 4678999999999999
Q ss_pred HHHHHHHHhcCceEEEecCCCChhH
Q psy9627 96 DKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 96 ~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
+.+++.|.+.|++...|++.-..++
T Consensus 441 E~ls~~L~~~gI~h~vLNAk~~~~E 465 (764)
T PRK12326 441 EELAERLRAAGVPAVVLNAKNDAEE 465 (764)
T ss_pred HHHHHHHHhCCCcceeeccCchHhH
Confidence 9999999999999999998754433
No 112
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.06 E-value=0.13 Score=37.63 Aligned_cols=100 Identities=10% Similarity=0.094 Sum_probs=58.9
Q ss_pred CCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccc-hH-----H-HHHHHHHhhhcCCCCc
Q psy9627 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHE-KE-----N-KLFGLLNDISSKDENK 84 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~-k~-----~-~L~~ll~~~~~~~~~~ 84 (129)
+..-++.+|||-|.++++-+... +-..+.++... .-.+...-.++.+..-+ |+ . .|...|+.- .....+
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~Rf-H~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq-~~~~~P 307 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILKG--NLRILKLPARF-HGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQ-RKTGRP 307 (441)
T ss_pred ccCceEEEecCChHHHHHHhhhC--CeeEeecchhh-cCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHH-HhcCCc
Confidence 45678999999987777655443 11223333222 11122333455554422 22 2 344455432 135689
Q ss_pred EEEEecccccHHHHHHHHHh-cC-ceEEEecCC
Q psy9627 85 TIIFAETKRKVDKITKSIQN-YG-WAAVGIHGD 115 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~-~~-~~~~~lhg~ 115 (129)
++||+++....+.+++.|+. .+ ...+..|+.
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~ 340 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSE 340 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeecc
Confidence 99999999999999999954 33 345677775
No 113
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=95.86 E-value=0.034 Score=32.01 Aligned_cols=40 Identities=8% Similarity=0.269 Sum_probs=35.1
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChh
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQ 119 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 119 (129)
....++||||++..++..++..|+..|++ +..|.|++..=
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~w 94 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEW 94 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHHH
Confidence 35579999999999999999999999998 99999998653
No 114
>KOG0952|consensus
Probab=95.85 E-value=0.1 Score=42.98 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=61.9
Q ss_pred ceEEEEEecCcHHHHHHHHHhcc-C-ccEEEeCCCCcccCCCceEEEEEcCcc---chHH-----HHHHHHHhhhcCCCC
Q psy9627 14 RQVLMWSATWPREVQKLAEDFLD-S-YIQINIGSLTLSANHNIQQVVEVCAEH---EKEN-----KLFGLLNDISSKDEN 83 (129)
Q Consensus 14 ~Q~ll~SAT~~~~v~~~~~~~~~-~-~~~i~~~~~~~~~~~~i~~~~~~~~~~---~k~~-----~L~~ll~~~~~~~~~ 83 (129)
-.++.+|||+|.-.. +..+++ + +.-+-.-+... -+.-+++.++-++.. .+.. .....++.+ ....
T Consensus 276 IRivgLSATlPN~eD--vA~fL~vn~~~glfsFd~~y-RPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~g~ 350 (1230)
T KOG0952|consen 276 IRIVGLSATLPNYED--VARFLRVNPYAGLFSFDQRY-RPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QEGH 350 (1230)
T ss_pred eEEEEeeccCCCHHH--HHHHhcCCCccceeeecccc-cccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--HcCC
Confidence 478999999984333 334444 2 23333222221 234566666665554 1111 111222222 2577
Q ss_pred cEEEEecccccHHHHHHHHHhc----Cc-------------------eEEEecCCCChhHHHHHHhc
Q psy9627 84 KTIIFAETKRKVDKITKSIQNY----GW-------------------AAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~----~~-------------------~~~~lhg~~~~~~R~~~l~~ 127 (129)
+++|||.+++.+.+.++.|.+. |. ..+..|.||.-++|.-+=+.
T Consensus 351 qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 351 QVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred eEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 9999999999999999998643 22 24456677777776655443
No 115
>KOG0947|consensus
Probab=95.77 E-value=0.14 Score=41.92 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=26.2
Q ss_pred HHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc
Q psy9627 71 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY 105 (129)
Q Consensus 71 ~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~ 105 (129)
..++..+...+-=|+||||=++++|++-+++|...
T Consensus 556 l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~ 590 (1248)
T KOG0947|consen 556 LDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNL 590 (1248)
T ss_pred HHHHHHHhhcccCceEEEEEccccHHHHHHHHhcc
Confidence 34444443344569999999999999999999754
No 116
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=95.68 E-value=0.048 Score=32.70 Aligned_cols=38 Identities=8% Similarity=0.109 Sum_probs=32.9
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce--EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA--AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~--~~~lhg~~~~ 118 (129)
+..+++|||++..++...+..|+..|++ +..+.|+++.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 3468999999999988899999999994 8899999865
No 117
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.16 Score=42.06 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=29.9
Q ss_pred hhhhhccCCCCceEEEEEecCcHHHH--HHHHHhccCccEEEeCCC
Q psy9627 3 WASRAMTYKPDRQVLMWSATWPREVQ--KLAEDFLDSYIQINIGSL 46 (129)
Q Consensus 3 ~~~il~~l~~~~Q~ll~SAT~~~~v~--~~~~~~~~~~~~i~~~~~ 46 (129)
|+++|-.+|+.-|++++|||+|...+ .++...-..|..+...+.
T Consensus 250 WEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~ 295 (1041)
T COG4581 250 WEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEH 295 (1041)
T ss_pred HHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecC
Confidence 57788889988899999999976544 333332245666655543
No 118
>KOG0923|consensus
Probab=95.67 E-value=0.15 Score=40.35 Aligned_cols=117 Identities=12% Similarity=0.186 Sum_probs=75.8
Q ss_pred hhhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhh-hcCC
Q psy9627 3 WASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDI-SSKD 81 (129)
Q Consensus 3 ~~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~ 81 (129)
+-..+....|+-..++.|||+..+ -...|+.+.-...++... --++-+|-..++.+=+++-...+.++ ...+
T Consensus 400 LvKDIar~RpdLKllIsSAT~DAe---kFS~fFDdapIF~iPGRR----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp 472 (902)
T KOG0923|consen 400 LVKDIARFRPDLKLLISSATMDAE---KFSAFFDDAPIFRIPGRR----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQP 472 (902)
T ss_pred HHHHHHhhCCcceEEeeccccCHH---HHHHhccCCcEEeccCcc----cceeeecccCCchhHHHHHHhhheeeEeccC
Confidence 334445556788899999999732 344566665555555544 23445666666655444433333222 2356
Q ss_pred CCcEEEEecccccHHHHHHHHHhc---------CceEEEecCCCChhHHHHHHh
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNY---------GWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.+-+|||..-++.-+...+.|... .+-+..+|++++.....++++
T Consensus 473 ~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFe 526 (902)
T KOG0923|consen 473 LGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFE 526 (902)
T ss_pred CccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcC
Confidence 689999998888888777777542 355889999999988777654
No 119
>KOG0385|consensus
Probab=95.63 E-value=0.065 Score=42.82 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=59.1
Q ss_pred cCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 61 CAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 61 ~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
+.+.-|+..|..+|..+. ....+++||-.=....+-+-+++.-.|+...-|-|..+.++|..+|++|+
T Consensus 467 v~nSGKm~vLDkLL~~Lk-~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn 534 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLK-EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFN 534 (971)
T ss_pred HhcCcceehHHHHHHHHH-hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcC
Confidence 344557888888887764 46789999999899999999999999999999999999999999999985
No 120
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=95.55 E-value=0.14 Score=41.69 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=65.5
Q ss_pred eEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEeccccc
Q psy9627 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRK 94 (129)
Q Consensus 15 Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~ 94 (129)
....+|.|...+-.++...+ +- ..+.++...+.......-.+ ......|+.++..-+.... ...+|+||-|.|.+.
T Consensus 376 kLsGMTGTa~te~~Ef~~iY-~l-~Vv~IPTnkP~~R~d~~d~v-y~t~~~K~~Ai~~ei~~~~-~~GrPVLIgT~SVe~ 451 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTY-KL-EVTVIPTNRPRRRQDWPDQV-YKTEIAKWRAVANETAEMH-KQGRPVLVGTTSVEK 451 (939)
T ss_pred hhcccCCCCHHHHHHHHHHh-CC-cEEEcCCCCCeeeecCCCeE-EcCHHHHHHHHHHHHHHHH-hCCCCEEEeeCCHHH
Confidence 34456778755555544443 22 22333333211211122222 3355678887776665542 467899999999999
Q ss_pred HHHHHHHHHhcCceEEEecCCCChhHHHH
Q psy9627 95 VDKITKSIQNYGWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 95 ~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 123 (129)
.+.++..|...|++...|+..-.+.+|+.
T Consensus 452 SE~ls~~L~~~gi~h~vLNAk~~~~~~EA 480 (939)
T PRK12902 452 SELLSALLQEQGIPHNLLNAKPENVEREA 480 (939)
T ss_pred HHHHHHHHHHcCCchheeeCCCcchHhHH
Confidence 99999999999999999999744334443
No 121
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=95.45 E-value=0.17 Score=41.00 Aligned_cols=97 Identities=9% Similarity=0.032 Sum_probs=61.6
Q ss_pred EEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccH
Q psy9627 16 VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKV 95 (129)
Q Consensus 16 ~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~ 95 (129)
...+|.|...+-.++...+ +-+ .+.++...+....... ..+......|+.++..-+.... ...+|+||-|.|.+..
T Consensus 362 L~GMTGTa~te~~Ef~~iY-~l~-vv~IPtnkp~~R~d~~-d~v~~t~~~K~~AI~~ei~~~~-~~grPVLIgT~SIe~S 437 (870)
T CHL00122 362 LSGMTGTAKTEELEFEKIY-NLE-VVCIPTHRPMLRKDLP-DLIYKDELSKWRAIADECLQMH-QTGRPILIGTTTIEKS 437 (870)
T ss_pred hcccCCCCHHHHHHHHHHh-CCC-EEECCCCCCccceeCC-CeEEeCHHHHHHHHHHHHHHHH-hcCCCEEEeeCCHHHH
Confidence 4456778755444443333 322 2334433311111111 2333455678877665554432 4678999999999999
Q ss_pred HHHHHHHHhcCceEEEecCCC
Q psy9627 96 DKITKSIQNYGWAAVGIHGDK 116 (129)
Q Consensus 96 ~~l~~~L~~~~~~~~~lhg~~ 116 (129)
+.++..|...|++...|++.-
T Consensus 438 E~ls~~L~~~gi~h~vLNAk~ 458 (870)
T CHL00122 438 ELLSQLLKEYRLPHQLLNAKP 458 (870)
T ss_pred HHHHHHHHHcCCccceeeCCC
Confidence 999999999999999999974
No 122
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=95.32 E-value=0.054 Score=45.25 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=36.1
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc------Cc---eEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY------GW---AAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~------~~---~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.++++||||.+++.|+.+.+.|.+. ++ .+..+||+.+. |.++++.|
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~F 751 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRF 751 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHH
Confidence 4589999999999999999888653 22 46679999864 56778776
No 123
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=95.18 E-value=0.041 Score=33.76 Aligned_cols=39 Identities=8% Similarity=0.159 Sum_probs=34.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCc--eEEEecCCCChh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGW--AAVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~--~~~~lhg~~~~~ 119 (129)
...+++|+|++..++...+..|+..|+ ++..+.|++..=
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W 111 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAW 111 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHH
Confidence 457899999999999999999999999 699999998654
No 124
>KOG0950|consensus
Probab=95.18 E-value=0.12 Score=42.16 Aligned_cols=46 Identities=13% Similarity=0.332 Sum_probs=35.2
Q ss_pred CCcEEEEecccccHHHHHHHHHh--------------------------------------cCceEEEecCCCChhHHHH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQN--------------------------------------YGWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~--------------------------------------~~~~~~~lhg~~~~~~R~~ 123 (129)
..++||||++++.|+.++..+.. ..+.+++.|+|+...+|+-
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHH
Confidence 45799999999999988765531 1345889999999999986
Q ss_pred HHhc
Q psy9627 124 VLKV 127 (129)
Q Consensus 124 ~l~~ 127 (129)
+=.+
T Consensus 540 iE~a 543 (1008)
T KOG0950|consen 540 IEAA 543 (1008)
T ss_pred HHHH
Confidence 5433
No 125
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=95.18 E-value=0.058 Score=32.66 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=36.8
Q ss_pred HHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCC
Q psy9627 69 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKS 117 (129)
Q Consensus 69 ~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~ 117 (129)
.+...+......+..++++||++..++...+..|+..|++ +..|-|++.
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 3444444432234579999999988999999999999995 888888874
No 126
>KOG0390|consensus
Probab=95.13 E-value=0.1 Score=41.77 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=44.0
Q ss_pred chHHHHHHHHHhhhcCCCCcEEEEe----cccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 65 EKENKLFGLLNDISSKDENKTIIFA----ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 65 ~k~~~L~~ll~~~~~~~~~~~iVF~----nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
-|+..|..++..+ ..++.+|+ |-+...+.+....+..|..+..|||.|+..+|..+++.|
T Consensus 578 ~kl~~L~~ll~~~----~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~F 641 (776)
T KOG0390|consen 578 GKLLVLVFLLEVI----REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTF 641 (776)
T ss_pred hHHHHHHHHHHHH----hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhc
Confidence 3555555555433 33444444 666666777777777899999999999999999999988
No 127
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=95.12 E-value=0.051 Score=31.71 Aligned_cols=36 Identities=11% Similarity=0.328 Sum_probs=32.2
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 117 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~ 117 (129)
..++++||.+-.++...+..|+..|+++..+.|++.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 468999999998999999999999999888999985
No 128
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=95.07 E-value=0.09 Score=32.05 Aligned_cols=39 Identities=5% Similarity=0.215 Sum_probs=33.2
Q ss_pred CCCCcEEEEecc-cccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 80 KDENKTIIFAET-KRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 80 ~~~~~~iVF~nt-~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
.+..++++||++ ...+...+..|+..|++ +..|-|++..
T Consensus 77 ~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 117 (122)
T cd01448 77 SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQA 117 (122)
T ss_pred CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 356789999999 58999999999999987 8899999865
No 129
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.07 E-value=0.17 Score=39.86 Aligned_cols=50 Identities=10% Similarity=0.240 Sum_probs=34.8
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQ 119 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 119 (129)
+...+..+....+++++||++|-+..+.+.+.+...... ....+|.-+-.
T Consensus 467 ~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~ 517 (654)
T COG1199 467 LAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDERE 517 (654)
T ss_pred HHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHH
Confidence 333344444456789999999999999999999887653 34455554444
No 130
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=95.06 E-value=0.052 Score=32.14 Aligned_cols=38 Identities=8% Similarity=0.212 Sum_probs=32.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+..++++||++..++...+..|...|++ +..+.|++..
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~ 103 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLD 103 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHH
Confidence 4579999999999999999999999985 7888888753
No 131
>KOG0920|consensus
Probab=95.04 E-value=0.45 Score=39.04 Aligned_cols=112 Identities=18% Similarity=0.265 Sum_probs=72.1
Q ss_pred CCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCc---------------ccCCCceEE------------EEEcCcc
Q psy9627 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTL---------------SANHNIQQV------------VEVCAEH 64 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~---------------~~~~~i~~~------------~~~~~~~ 64 (129)
++-+++|+|||+. -+....++...-.+.+..... -......++ ......+
T Consensus 318 p~LkvILMSAT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (924)
T KOG0920|consen 318 PDLKVILMSATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPE 394 (924)
T ss_pred CCceEEEeeeecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcccc
Confidence 5779999999998 445566666655565543210 000011111 1111223
Q ss_pred chHHHHHHHHHhhhcC-CCCcEEEEecccccHHHHHHHHHhc-------CceEEEecCCCChhHHHHHHh
Q psy9627 65 EKENKLFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQNY-------GWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 65 ~k~~~L~~ll~~~~~~-~~~~~iVF~nt~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~R~~~l~ 126 (129)
...+.+.+++..+... ..+.+|||.+.-.....+.+.|... .+-+..+|+.|+..+-..+.+
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~ 464 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFK 464 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcC
Confidence 4556677777766543 4689999999999999999999642 366889999999977666543
No 132
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=94.97 E-value=0.059 Score=31.47 Aligned_cols=37 Identities=8% Similarity=0.114 Sum_probs=32.4
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCc-eEEEecCCCC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKS 117 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~-~~~~lhg~~~ 117 (129)
+..+++|+|++..++...+..|+..|+ ++..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 456899999999999999999999998 5899999874
No 133
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=94.92 E-value=0.055 Score=31.73 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=32.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCc-eEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 118 (129)
+..+++++|++..++...+..|.+.|+ .+..+.|++..
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~ 91 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDA 91 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHH
Confidence 457999999999999999999998887 68889999754
No 134
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.87 E-value=0.28 Score=40.39 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=36.7
Q ss_pred HHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcC----ceEEEecCCCChhHHHHHHhcC
Q psy9627 69 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG----WAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 69 ~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+...+..+....+++++||++|.+..+.+++.|.... +.+ ..+ +++...|.+.++.|
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~l-l~Q-g~~~~~r~~l~~~F 800 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVL-LAQ-GVSSGSRARLTKQF 800 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceE-Eec-CCCCCCHHHHHHHH
Confidence 34444444444467899999999999999999997542 222 223 33334456655554
No 135
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.81 E-value=0.34 Score=38.67 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCc-------eEEEecCCCChhHHHHHHhcC
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW-------AAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~-------~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..+...|..+....++.++||++|-...+.+.+.+...|+ +-...-+. +..++.++++.|
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f 574 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERY 574 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHH
Confidence 3345555555445689999999999999999998876542 12222222 224667777665
No 136
>KOG0925|consensus
Probab=94.72 E-value=0.56 Score=36.03 Aligned_cols=96 Identities=10% Similarity=0.166 Sum_probs=62.9
Q ss_pred CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHH-HHHhhhcCCCCcEEEEe
Q psy9627 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFG-LLNDISSKDENKTIIFA 89 (129)
Q Consensus 11 ~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~-ll~~~~~~~~~~~iVF~ 89 (129)
.++-.++.+|||+. ..-.+.++.++-.+.++... -++-+|-.-+..+-+++-++ +++....+.++-++||.
T Consensus 189 rpdLk~vvmSatl~---a~Kfq~yf~n~Pll~vpg~~-----PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFL 260 (699)
T KOG0925|consen 189 RPDLKLVVMSATLD---AEKFQRYFGNAPLLAVPGTH-----PVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFL 260 (699)
T ss_pred CCCceEEEeecccc---hHHHHHHhCCCCeeecCCCC-----ceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 35889999999975 23345677777777777632 22334433344555555433 34433445689999999
Q ss_pred cccccHHHHHHHHHh---------cCceEEEecC
Q psy9627 90 ETKRKVDKITKSIQN---------YGWAAVGIHG 114 (129)
Q Consensus 90 nt~~~~~~l~~~L~~---------~~~~~~~lhg 114 (129)
...+.-+..++.+.. ..++|.-||-
T Consensus 261 tgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP 294 (699)
T KOG0925|consen 261 TGEEEIEDACRKISREVDNLGPQVGPLKVVPLYP 294 (699)
T ss_pred cCHHHHHHHHHHHHHHHHhhccccCCceEEecCc
Confidence 998888888877753 1467888884
No 137
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=94.60 E-value=0.27 Score=40.19 Aligned_cols=100 Identities=9% Similarity=0.064 Sum_probs=64.4
Q ss_pred EEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccH
Q psy9627 16 VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKV 95 (129)
Q Consensus 16 ~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~ 95 (129)
...++.|...+-.++...+ +-+ .+.++...+.........+ ......|+.++..-+..+. ...+|+||-|.|.+..
T Consensus 387 LsGMTGTa~te~~Ef~~iY-~l~-Vv~IPTnkP~~R~D~~d~v-y~t~~eK~~Ai~~ei~~~~-~~GrPVLVGT~SVe~S 462 (913)
T PRK13103 387 LSGMTGTADTEAFEFRQIY-GLD-VVVIPPNKPLARKDFNDLV-YLTAEEKYAAIITDIKECM-ALGRPVLVGTATIETS 462 (913)
T ss_pred hccCCCCCHHHHHHHHHHh-CCC-EEECCCCCCcccccCCCeE-EcCHHHHHHHHHHHHHHHH-hCCCCEEEEeCCHHHH
Confidence 3456778765555544444 322 2333332212222222233 3455678888776666553 4678999999999999
Q ss_pred HHHHHHHHhcCceEEEecCCCChh
Q psy9627 96 DKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 96 ~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
+.++..|+..|++...|+.....+
T Consensus 463 E~ls~~L~~~gi~h~VLNAk~~~~ 486 (913)
T PRK13103 463 EHMSNLLKKEGIEHKVLNAKYHEK 486 (913)
T ss_pred HHHHHHHHHcCCcHHHhccccchh
Confidence 999999999999998888875543
No 138
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.56 E-value=0.16 Score=40.86 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=55.0
Q ss_pred chHHHHHHHH-HhhhcCCC-CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 65 EKENKLFGLL-NDISSKDE-NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 65 ~k~~~L~~ll-~~~~~~~~-~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
.|...+..++ ........ .+++||.......+-+...|+..+++...++|.++.++|...++.|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~ 758 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFN 758 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhh
Confidence 6788887888 44432222 29999999999999999999999999999999999999999999873
No 139
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=94.52 E-value=0.056 Score=31.89 Aligned_cols=38 Identities=11% Similarity=0.313 Sum_probs=32.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+..+++|+|.+-.++...+..|...|+. +..+.|++..
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 98 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILK 98 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHH
Confidence 4568999999999999999999999995 8889998753
No 140
>KOG0384|consensus
Probab=94.43 E-value=0.048 Score=45.36 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 66 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 66 k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
|+..|-.||..+. ..+.++|||-.=.++.+-|++||...|++..-|-|.+.-.-|..+|+-|+
T Consensus 684 KlVLLDKLL~rLk-~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFn 746 (1373)
T KOG0384|consen 684 KLVLLDKLLPRLK-EGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFN 746 (1373)
T ss_pred cEEeHHHHHHHHh-cCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhcc
Confidence 4444444444432 45679999999999999999999999999999999999999999999985
No 141
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=94.40 E-value=0.088 Score=31.64 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=32.8
Q ss_pred CCCcEEEEeccc--ccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 81 DENKTIIFAETK--RKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~--~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
+..+++|||++. ..+...+..|+..|+++..+.|++..=
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~~W 103 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLDWW 103 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHHHH
Confidence 457899999875 478889999999999999999998653
No 142
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=94.39 E-value=0.084 Score=32.71 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=33.2
Q ss_pred CCCCcEEEEec-ccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 80 KDENKTIIFAE-TKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 80 ~~~~~~iVF~n-t~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
.+..+++|||+ +..++...+..|+..|+.+..+.|++..
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 34578999997 5778888999999899999999999865
No 143
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.37 E-value=0.3 Score=39.72 Aligned_cols=44 Identities=5% Similarity=0.175 Sum_probs=33.1
Q ss_pred HHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecC
Q psy9627 69 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG 114 (129)
Q Consensus 69 ~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg 114 (129)
.+...+..+. ...++++|+++|.+..+.+++.|...++++ ...|
T Consensus 635 ~~~~~i~~~~-~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg 678 (820)
T PRK07246 635 EIAKRLEELK-QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQE 678 (820)
T ss_pred HHHHHHHHHH-hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeC
Confidence 4444454444 457899999999999999999997766666 5666
No 144
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=94.34 E-value=0.091 Score=30.96 Aligned_cols=39 Identities=5% Similarity=0.233 Sum_probs=33.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 119 (129)
...+++++|++..++...+..|...|+. +..+.|++..=
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w 96 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAW 96 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHH
Confidence 3568999999999999999999999985 88999997653
No 145
>KOG1000|consensus
Probab=94.22 E-value=0.16 Score=38.84 Aligned_cols=119 Identities=13% Similarity=0.193 Sum_probs=73.8
Q ss_pred hhhccCCCCceEEEEEecC--cHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHh---hhc
Q psy9627 5 SRAMTYKPDRQVLMWSATW--PREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLND---ISS 79 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~--~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~---~~~ 79 (129)
+++..+|+++|.+..-++- ......+...-.+ ...+.+.... ....+ .++.-...-|....++-|-. +..
T Consensus 415 dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~-~t~~~~~e~~--~~~l~--l~y~~tgiaK~~av~eyi~~~~~l~d 489 (689)
T KOG1000|consen 415 DVLKQLPPKRREVVYVSGGRIDARMDDLVKAAAD-YTKVNSMERK--HESLL--LFYSLTGIAKAAAVCEYILENYFLPD 489 (689)
T ss_pred HHHhhCCccceEEEEEcCCccchHHHHHHHHhhh-cchhhhhhhh--hHHHH--HHHHHhcccccHHHHHHHHhCccccc
Confidence 5778888888766654443 3333333333211 1222221111 00111 11122334466655544432 123
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.++.+.+|||.-....+.+...+.+.++...-|-|.-+..+|....+.|
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsF 538 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSF 538 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHh
Confidence 5678999999999999999999999999999999999999999888766
No 146
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=94.21 E-value=0.33 Score=40.29 Aligned_cols=99 Identities=10% Similarity=0.063 Sum_probs=64.4
Q ss_pred EEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHH
Q psy9627 18 MWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDK 97 (129)
Q Consensus 18 l~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~ 97 (129)
.++.|...+-.++...+ +-+ .+.++...+....... ..+......|+.++..-+.... ...+|+||=|.|.+..+.
T Consensus 568 GMTGTA~tea~Ef~~IY-~L~-Vv~IPTnrP~~R~D~~-D~vy~t~~eK~~Aii~ei~~~~-~~GrPVLVGT~SVe~SE~ 643 (1112)
T PRK12901 568 GMTGTAETEAGEFWDIY-KLD-VVVIPTNRPIARKDKE-DLVYKTKREKYNAVIEEITELS-EAGRPVLVGTTSVEISEL 643 (1112)
T ss_pred ccCCCCHHHHHHHHHHh-CCC-EEECCCCCCcceecCC-CeEecCHHHHHHHHHHHHHHHH-HCCCCEEEEeCcHHHHHH
Confidence 46777766555554443 322 2333333211111111 2333456778888776666553 467899999999999999
Q ss_pred HHHHHHhcCceEEEecCCCChhH
Q psy9627 98 ITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 98 l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
++..|+..||+...|+....+++
T Consensus 644 lS~~L~~~gI~H~VLNAK~h~~E 666 (1112)
T PRK12901 644 LSRMLKMRKIPHNVLNAKLHQKE 666 (1112)
T ss_pred HHHHHHHcCCcHHHhhccchhhH
Confidence 99999999999998988755444
No 147
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=94.07 E-value=0.075 Score=31.19 Aligned_cols=38 Identities=13% Similarity=0.310 Sum_probs=32.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+..+++|||++..++...+..|...|+. +..|-|++..
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~ 98 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKD 98 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHH
Confidence 4579999999988899999999999987 8889888754
No 148
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=93.99 E-value=0.29 Score=29.39 Aligned_cols=47 Identities=6% Similarity=0.215 Sum_probs=34.6
Q ss_pred HHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 72 ~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
..+.........++++||++-.++...+..|...|+.....-|++..
T Consensus 50 ~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~~ 96 (104)
T PRK10287 50 ERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLKD 96 (104)
T ss_pred HHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHHH
Confidence 34444322334679999999999999999999999876566787654
No 149
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=93.95 E-value=0.61 Score=38.42 Aligned_cols=102 Identities=13% Similarity=0.140 Sum_probs=64.6
Q ss_pred eEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEeccccc
Q psy9627 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRK 94 (129)
Q Consensus 15 Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~ 94 (129)
....++.|...+-.++... .+- ..+.++...+......... +......|+.++..-+.... ...+|+||-|.|...
T Consensus 505 kl~GmTGTa~~e~~Ef~~i-Y~l-~v~~iPt~kp~~r~d~~d~-iy~t~~~k~~ai~~ei~~~~-~~grPvLigt~si~~ 580 (970)
T PRK12899 505 KLAGMTGTAITESREFKEI-YNL-YVLQVPTFKPCLRIDHNDE-FYMTEREKYHAIVAEIASIH-RKGNPILIGTESVEV 580 (970)
T ss_pred hhcccCCCCHHHHHHHHHH-hCC-CEEECCCCCCceeeeCCCc-EecCHHHHHHHHHHHHHHHH-hCCCCEEEEeCcHHH
Confidence 4456788876555554333 332 2333433331111111112 23455678888766665542 356899999999999
Q ss_pred HHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 95 VDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 95 ~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
.+.++..|...|++...|+..-..++
T Consensus 581 se~ls~~L~~~gi~h~vLNak~~~~E 606 (970)
T PRK12899 581 SEKLSRILRQNRIEHTVLNAKNHAQE 606 (970)
T ss_pred HHHHHHHHHHcCCcceecccchhhhH
Confidence 99999999999999999998744433
No 150
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=93.90 E-value=0.13 Score=29.71 Aligned_cols=37 Identities=5% Similarity=0.311 Sum_probs=32.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKS 117 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~ 117 (129)
+..+++|+|++..++...+..|+..|+. +..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 4579999999999999999999999984 888999874
No 151
>KOG0392|consensus
Probab=93.89 E-value=0.13 Score=43.05 Aligned_cols=100 Identities=11% Similarity=0.135 Sum_probs=66.5
Q ss_pred HHHHHhccCccEEEeCCCC--cccCCCceEEEEE---cCccchHHHHHHHHHhhhcC-------------CCCcEEEEec
Q psy9627 29 KLAEDFLDSYIQINIGSLT--LSANHNIQQVVEV---CAEHEKENKLFGLLNDISSK-------------DENKTIIFAE 90 (129)
Q Consensus 29 ~~~~~~~~~~~~i~~~~~~--~~~~~~i~~~~~~---~~~~~k~~~L~~ll~~~~~~-------------~~~~~iVF~n 90 (129)
+..++..++|..+..+.-. ....+.+.|..-. +....|+.+|.++|..+.-. ...+++|||.
T Consensus 1269 qYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQ 1348 (1549)
T KOG0392|consen 1269 QYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQ 1348 (1549)
T ss_pred HHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeee
Confidence 3445556677766654211 0111222222111 23355899999999877421 2358999999
Q ss_pred ccccHHHHHHHHHhcCce-E--EEecCCCChhHHHHHHhcC
Q psy9627 91 TKRKVDKITKSIQNYGWA-A--VGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 91 t~~~~~~l~~~L~~~~~~-~--~~lhg~~~~~~R~~~l~~~ 128 (129)
-+...+.+.+-|.+...+ + ..|-|..++.+|.++.++|
T Consensus 1349 lK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~F 1389 (1549)
T KOG0392|consen 1349 LKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERF 1389 (1549)
T ss_pred HHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHh
Confidence 999999999999776544 3 3789999999999999988
No 152
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=93.58 E-value=0.17 Score=29.91 Aligned_cols=37 Identities=8% Similarity=0.160 Sum_probs=32.0
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
..+++|+|.+..++...+..|+..|+. +..+.|+++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a 102 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINA 102 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHH
Confidence 568999999988999999999999985 8889999853
No 153
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.55 E-value=0.24 Score=39.61 Aligned_cols=66 Identities=11% Similarity=0.165 Sum_probs=54.8
Q ss_pred EcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh-cCceEEEecCCCChhHHHHHHh
Q psy9627 60 VCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN-YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 60 ~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
-+++.-|.+..+.++.... ....++||-++...-...+.+.++. .|.+++.+||+++..+|.+.-.
T Consensus 224 GvTGSGKTEvYl~~i~~~L-~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~ 290 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVL-AQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWR 290 (730)
T ss_pred CCCCCcHHHHHHHHHHHHH-HcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHH
Confidence 4566778888888888765 3567999999999999888888865 4899999999999999987643
No 154
>KOG0391|consensus
Probab=93.51 E-value=0.23 Score=41.89 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=55.0
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 66 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 66 k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
|+..|.-||+++. ....+++||+.-.+..+-|..+|..+|+-..-|-|.-.-++|...++.|
T Consensus 1261 KLQtLAiLLqQLk-~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerF 1322 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLK-SEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERF 1322 (1958)
T ss_pred hHHHHHHHHHHHH-hcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHh
Confidence 6667777777664 4578999999999999999999999999999999999999999999987
No 155
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=93.33 E-value=0.36 Score=28.51 Aligned_cols=39 Identities=5% Similarity=0.245 Sum_probs=30.8
Q ss_pred CCCcEEEEecccccHHHHHHH-----HHhcCc-eEEEecCCCChh
Q psy9627 81 DENKTIIFAETKRKVDKITKS-----IQNYGW-AAVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~-----L~~~~~-~~~~lhg~~~~~ 119 (129)
....+|+||++..+....+.. |...|+ ++..|.||+..=
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w 110 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAW 110 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHH
Confidence 445789999888888777776 888888 899999987653
No 156
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=93.21 E-value=1.1 Score=35.87 Aligned_cols=54 Identities=13% Similarity=0.348 Sum_probs=35.4
Q ss_pred HHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh-cCceEEEecCCCChhHHHHHHhc
Q psy9627 69 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN-YGWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 69 ~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
.+...+..+.. ..+.++||++|.+..+.+++.|.. .+.++ ..+|.. .|.+.++.
T Consensus 522 ~~~~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~~---~~~~ll~~ 576 (697)
T PRK11747 522 EMAEFLPELLE-KHKGSLVLFASRRQMQKVADLLPRDLRLML-LVQGDQ---PRQRLLEK 576 (697)
T ss_pred HHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHhcCCcE-EEeCCc---hHHHHHHH
Confidence 44444544444 456799999999999999999974 34443 456643 45555543
No 157
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=93.20 E-value=0.37 Score=30.65 Aligned_cols=47 Identities=6% Similarity=0.089 Sum_probs=36.7
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCc-eEEEecCCCCh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 118 (129)
|...+..+ .+..+++|+|.+...+...+..|+..|+ ++..|.|++..
T Consensus 39 l~~~l~~l--~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~a 86 (145)
T cd01535 39 LAQALEKL--PAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAA 86 (145)
T ss_pred HHHHHHhc--CCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHH
Confidence 34445443 2457899999999999999999998887 79999999754
No 158
>PLN02160 thiosulfate sulfurtransferase
Probab=93.19 E-value=0.14 Score=32.28 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=34.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 119 (129)
+..+++++|.+-.++...+..|...|+. +..|.|++..=
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W 119 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAW 119 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHH
Confidence 4578999999999999999999999985 88899998653
No 159
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=93.08 E-value=0.52 Score=32.91 Aligned_cols=61 Identities=21% Similarity=0.356 Sum_probs=49.7
Q ss_pred CCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEe-cccccHHHHHHHHHhcCceEEEec
Q psy9627 51 NHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFA-ETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 51 ~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~-nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
......-++.+.+.+|-..|..++..+ ....+.|||+ ++.+....+.+.++..||....+|
T Consensus 148 ~~~~~~GIlft~~~~KG~~L~~fL~~~--~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 148 APSFYDGILFTGGQDKGEVLKYFLDKI--NQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred CceeecCeEEeCCCccHHHHHHHHHHc--CCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 345666788899999999999999976 3456677777 889999999999999999877776
No 160
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.03 E-value=0.57 Score=36.03 Aligned_cols=62 Identities=8% Similarity=0.153 Sum_probs=46.2
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh-cCceEEEecCCCChhHHHHHHh
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN-YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.-|-.....++.... ....++||-+++..-+..+.+.|++ .|.++..+||+++..+|.+...
T Consensus 8 sGKT~v~l~~i~~~l-~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 8 SGKTEVYLQAIEKVL-ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred CCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHH
Confidence 335554444454332 2456899999999999999999976 4788999999999998876643
No 161
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=93.00 E-value=0.22 Score=28.90 Aligned_cols=38 Identities=8% Similarity=0.294 Sum_probs=30.0
Q ss_pred CCCcEEEEecccc--cHHHHHHHHHhcCc-eEEEecCCCCh
Q psy9627 81 DENKTIIFAETKR--KVDKITKSIQNYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~--~~~~l~~~L~~~~~-~~~~lhg~~~~ 118 (129)
+..+++|+|.+-. .+...+..|+..|+ .+..+.|++..
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~ 89 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQG 89 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHHH
Confidence 3578999999843 36788889999887 58889998853
No 162
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=92.79 E-value=0.53 Score=28.06 Aligned_cols=37 Identities=8% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 117 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~ 117 (129)
...+++++|++-.++...+..|...|+.....-||+.
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 93 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGIK 93 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCHH
Confidence 3467889999999999999999999987444447754
No 163
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.73 E-value=0.64 Score=37.07 Aligned_cols=63 Identities=10% Similarity=0.169 Sum_probs=47.6
Q ss_pred ccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh-cCceEEEecCCCChhHHHHHHh
Q psy9627 63 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN-YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 63 ~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
+.-|......++.... ....++||-++|++-+..+.+.|++ .|..+..+||+++..+|.+...
T Consensus 172 GSGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~ 235 (679)
T PRK05580 172 GSGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWR 235 (679)
T ss_pred CChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHH
Confidence 3446655544554332 2356899999999999999999976 4889999999999988876543
No 164
>PRK14873 primosome assembly protein PriA; Provisional
Probab=92.48 E-value=0.75 Score=36.62 Aligned_cols=63 Identities=10% Similarity=0.138 Sum_probs=50.7
Q ss_pred ccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc-C-ceEEEecCCCChhHHHHHHh
Q psy9627 63 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-G-WAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 63 ~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~-~-~~~~~lhg~~~~~~R~~~l~ 126 (129)
+..|-+....++..... ...++||-+++...+..+.+.|+.. | -.++.||++++..+|.++..
T Consensus 170 GSGKTevyl~~i~~~l~-~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 170 GEDWARRLAAAAAATLR-AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWL 234 (665)
T ss_pred CCcHHHHHHHHHHHHHH-cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHH
Confidence 45677777777776542 4668999999999999999999763 4 67999999999999987653
No 165
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=92.26 E-value=0.82 Score=27.18 Aligned_cols=39 Identities=8% Similarity=0.129 Sum_probs=33.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 119 (129)
...+++|+|.+..++...+..|+..|+. +..+.|++..-
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w 96 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAW 96 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHH
Confidence 4568999999999999999999999986 88899998653
No 166
>KOG0924|consensus
Probab=92.22 E-value=1.7 Score=34.99 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=64.9
Q ss_pred ChhhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHH-HHHHHHhhhcC
Q psy9627 2 NWASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENK-LFGLLNDISSK 80 (129)
Q Consensus 2 g~~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~-L~~ll~~~~~~ 80 (129)
|+....-+-..+-.++..||||.. +++. .|+.+.-...++.... -++-.|-..+-++=+++ +.+.++.-...
T Consensus 489 Gllk~~larRrdlKliVtSATm~a--~kf~-nfFgn~p~f~IpGRTy----PV~~~~~k~p~eDYVeaavkq~v~Ihl~~ 561 (1042)
T KOG0924|consen 489 GLLKKVLARRRDLKLIVTSATMDA--QKFS-NFFGNCPQFTIPGRTY----PVEIMYTKTPVEDYVEAAVKQAVQIHLSG 561 (1042)
T ss_pred HHHHHHHHhhccceEEEeeccccH--HHHH-HHhCCCceeeecCCcc----ceEEEeccCchHHHHHHHHhhheEeeccC
Confidence 343333333456688999999973 3333 3444433344443321 12222322233332222 33333322234
Q ss_pred CCCcEEEEecccccHHHHHHHHHh----------cCceEEEecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN----------YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~----------~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.++-++||..-++..+-.+..++. .++.+..+++.|++.-..++++
T Consensus 562 ~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq 617 (1042)
T KOG0924|consen 562 PPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQ 617 (1042)
T ss_pred CCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcc
Confidence 568999999877766655554432 2788999999999987776654
No 167
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=92.17 E-value=0.31 Score=34.38 Aligned_cols=38 Identities=8% Similarity=-0.020 Sum_probs=33.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+..++|+||++-.++-.++..|+..|++ +..|.|++.+
T Consensus 230 ~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~e 268 (281)
T PRK11493 230 FDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSE 268 (281)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHH
Confidence 4568999999999999999999999995 8899998765
No 168
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=92.11 E-value=0.26 Score=40.02 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=35.8
Q ss_pred CccchHHHHHHHHHhhhcC--------CCCcEEEEecccccHHHHHHHHHh
Q psy9627 62 AEHEKENKLFGLLNDISSK--------DENKTIIFAETKRKVDKITKSIQN 104 (129)
Q Consensus 62 ~~~~k~~~L~~ll~~~~~~--------~~~~~iVF~nt~~~~~~l~~~L~~ 104 (129)
+...|+..|..+|+.+... +++++||||+..+.|..+.++|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 5678999999999766432 357899999999999999999965
No 169
>PRK05320 rhodanese superfamily protein; Provisional
Probab=92.04 E-value=0.27 Score=34.42 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=35.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChhH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQE 120 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~ 120 (129)
...++++||.+-.+++..+..|+..|+. +..|.||+..-.
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~ 214 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYF 214 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHH
Confidence 4568999999999999999999999995 899999987644
No 170
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=91.99 E-value=0.4 Score=29.18 Aligned_cols=38 Identities=3% Similarity=0.141 Sum_probs=32.9
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+..+++++|++..++...+..|...|++ +..+.|++..
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 4578999999999999999999999986 7778898865
No 171
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=91.85 E-value=0.67 Score=33.44 Aligned_cols=40 Identities=10% Similarity=0.277 Sum_probs=35.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChhH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQE 120 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~ 120 (129)
+..++++||++-.+++..+..|...|++ +..|.||+..-.
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~ 210 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYG 210 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHH
Confidence 4578999999999999999999999995 999999987643
No 172
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=91.78 E-value=0.63 Score=29.31 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=35.0
Q ss_pred HHHHHHHhhhcCCCCcEEEEecc---cccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 69 KLFGLLNDISSKDENKTIIFAET---KRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 69 ~L~~ll~~~~~~~~~~~iVF~nt---~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
.+..++....-.+..++||||++ ...+-.+.-.|+..|++ +..|-|+++.
T Consensus 82 ~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~ 135 (138)
T cd01445 82 EFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFE 135 (138)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHH
Confidence 34555554433456799999986 45666777778888876 7889988753
No 173
>PRK01415 hypothetical protein; Validated
Probab=91.62 E-value=0.25 Score=34.38 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=35.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChhH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQE 120 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~ 120 (129)
...++++||.+--+|+..+..|++.|+. +..|.||+..-.
T Consensus 170 k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~ 210 (247)
T PRK01415 170 KGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYL 210 (247)
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHH
Confidence 4568999999999999999999999996 899999976654
No 174
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=91.23 E-value=1.1 Score=35.77 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=42.5
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
+..++..+ ....+++|-++|+.-|+..++.++. .|+++..+||+++..+|.+.++
T Consensus 300 ~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~ 358 (681)
T PRK10917 300 ALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILE 358 (681)
T ss_pred HHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHH
Confidence 34444443 2466899999999999988777654 4799999999999988877664
No 175
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=91.23 E-value=0.48 Score=29.09 Aligned_cols=38 Identities=11% Similarity=0.255 Sum_probs=31.2
Q ss_pred CCCcEEEEec-ccccHHHHHHHHHhc------------Cc-eEEEecCCCCh
Q psy9627 81 DENKTIIFAE-TKRKVDKITKSIQNY------------GW-AAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~n-t~~~~~~l~~~L~~~------------~~-~~~~lhg~~~~ 118 (129)
+..+++++|+ +..++...+..|+.. |+ .+..|.||+..
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~ 118 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKN 118 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHh
Confidence 4578999997 989999999999874 65 69999999754
No 176
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=90.81 E-value=1.6 Score=28.82 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=43.3
Q ss_pred cchHH-HHHHHHHhhhcC---CCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHh
Q psy9627 64 HEKEN-KLFGLLNDISSK---DENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 64 ~~k~~-~L~~ll~~~~~~---~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.-|.. ++..++..+... +..++||.|+++..+....+.++. .++.+..++|+.+..++...++
T Consensus 47 ~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (203)
T cd00268 47 SGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK 117 (203)
T ss_pred CcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc
Confidence 34542 244455544333 456899999999998887776654 3788999999999877665553
No 177
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=90.54 E-value=0.82 Score=25.60 Aligned_cols=38 Identities=8% Similarity=0.284 Sum_probs=32.1
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCc-eEEEecCCCC
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKS 117 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~-~~~~lhg~~~ 117 (129)
....+++|+|++...+...+..|+..|+ ++..+-|++.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 3567999999999999999999999875 5778888874
No 178
>KOG1123|consensus
Probab=90.19 E-value=0.95 Score=35.03 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=42.9
Q ss_pred CccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 62 AEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 62 ~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
=+.+|+.....||+.. .....++|||....-...+.+-.|.+ -.|+|.-+|.+|.++|+.|
T Consensus 524 MNP~KFraCqfLI~~H-E~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnF 584 (776)
T KOG1123|consen 524 MNPNKFRACQFLIKFH-ERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNF 584 (776)
T ss_pred cCcchhHHHHHHHHHH-HhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhc
Confidence 3455676666666532 23567999998766555555555433 2689999999999999988
No 179
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=90.16 E-value=1.2 Score=28.84 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=38.7
Q ss_pred EEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHH
Q psy9627 57 VVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102 (129)
Q Consensus 57 ~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L 102 (129)
.+|......+..+++.|+++.. ....+++|.|.+.+.++.|-+.|
T Consensus 5 ~FYhL~~~~~~~~acrL~~Ka~-~~G~rv~I~~~d~~~~~~LD~~L 49 (154)
T PRK06646 5 SIYQTSDELLLKSILLLIEKCY-YSDLKSVILTADADQQEMLNKNL 49 (154)
T ss_pred EEEEeCCChHHHHHHHHHHHHH-HcCCEEEEEcCCHHHHHHHHHHh
Confidence 5677788889999999998765 35789999999999999999988
No 180
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=90.15 E-value=0.73 Score=33.27 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=32.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+..++|+||++-.++-..+-.|+..|++ +..|.|++.+
T Consensus 268 ~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~e 306 (320)
T PLN02723 268 LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTE 306 (320)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHH
Confidence 4579999999998998899999999985 8899998764
No 181
>KOG0926|consensus
Probab=90.01 E-value=1.1 Score=36.48 Aligned_cols=88 Identities=9% Similarity=0.119 Sum_probs=51.1
Q ss_pred CceEEEEEecCcHHHHHHH--HHhcc-CccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEe
Q psy9627 13 DRQVLMWSATWPREVQKLA--EDFLD-SYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFA 89 (129)
Q Consensus 13 ~~Q~ll~SAT~~~~v~~~~--~~~~~-~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~ 89 (129)
.-..+++|||+- +.++. ++.++ .|-.|.+..... +-..|+--..+.+---.+....++.....+++.++||+
T Consensus 414 pLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQf---PVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFv 488 (1172)
T KOG0926|consen 414 PLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQF---PVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFV 488 (1172)
T ss_pred ceeEEEEeeeEE--ecccccCceecCCCCceeeeecccC---ceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 356889999973 33333 22333 244666666442 23344433333311122222222222235889999999
Q ss_pred cccccHHHHHHHHHhc
Q psy9627 90 ETKRKVDKITKSIQNY 105 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~ 105 (129)
.-+..++.+.+.|++.
T Consensus 489 TGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 489 TGQQEVDQLCEKLRKR 504 (1172)
T ss_pred eChHHHHHHHHHHHhh
Confidence 9999999999999875
No 182
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=89.96 E-value=0.64 Score=30.18 Aligned_cols=38 Identities=8% Similarity=0.119 Sum_probs=31.1
Q ss_pred CCCcEEEEecccc-cHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKR-KVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~-~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+..++|+||++-. .+...+..|+..|++ |..|.|++..
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~a 154 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDG 154 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHH
Confidence 5679999999864 677788888999986 8889999864
No 183
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=89.89 E-value=1.2 Score=28.34 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=36.5
Q ss_pred EEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHH
Q psy9627 57 VVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102 (129)
Q Consensus 57 ~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L 102 (129)
.++......+...++.++++.. ....+++|.|.+.+.++.+-+.|
T Consensus 5 ~FY~l~~~~~~~~~c~L~~ka~-~~g~rv~I~~~d~~~a~~lD~~L 49 (142)
T PRK05728 5 DFYHLTLSALEALLCELAEKAL-RAGWRVLVQCEDEEQAEALDEAL 49 (142)
T ss_pred EEEecCchhHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHh
Confidence 3444566778888999998765 35789999999999999999998
No 184
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=89.77 E-value=0.95 Score=29.02 Aligned_cols=41 Identities=32% Similarity=0.429 Sum_probs=32.7
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 45 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~ 45 (129)
.++..+++..+.+++|||.+.........++.+...+....
T Consensus 152 ~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 152 KLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 35555667889999999999999999999888776666554
No 185
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=89.71 E-value=1.5 Score=34.65 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=42.6
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
+..++..+ ....+++|-++|+.-|+.+++.+++ .|+++..+||+++..+|...++
T Consensus 274 ~l~il~~~--~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~ 332 (630)
T TIGR00643 274 ALAMLAAI--EAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLE 332 (630)
T ss_pred HHHHHHHH--HcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHH
Confidence 34444443 2466999999999999988877764 4799999999999998877654
No 186
>KOG0389|consensus
Probab=89.52 E-value=1.5 Score=35.56 Aligned_cols=63 Identities=19% Similarity=0.343 Sum_probs=56.6
Q ss_pred chHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 65 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 65 ~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
-|...|..+|..+.. ++.+++||-.-....+-|-..|...++...-|-|.-....|...++.|
T Consensus 761 gK~r~L~~LLp~~k~-~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~F 823 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKK-KGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEF 823 (941)
T ss_pred hhHhHHHHHHHHHhh-cCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhh
Confidence 378888888887653 458999999999999999999999999999999999999999999988
No 187
>KOG0387|consensus
Probab=89.40 E-value=1.4 Score=35.74 Aligned_cols=64 Identities=16% Similarity=0.316 Sum_probs=56.2
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHH-hcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQ-NYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~-~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.-|+..+..++..... .+.++++|..|+...+.+-..|. ..|+.+..+-|.-+...|...++.|
T Consensus 529 sGKm~vl~~ll~~W~k-qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~F 593 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKK-QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRF 593 (923)
T ss_pred cchHHHHHHHHHHHhh-CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhh
Confidence 3478888888887643 45699999999999999999998 6899999999999999999999987
No 188
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=89.02 E-value=2.1 Score=34.60 Aligned_cols=55 Identities=16% Similarity=0.327 Sum_probs=42.6
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc---CceEEEecCCCChhHHHHH
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~ 124 (129)
++-+++.+...+..++|+.++|++-+......++.. ++.+..++|+.++.+|...
T Consensus 69 ~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i 126 (742)
T TIGR03817 69 QLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA 126 (742)
T ss_pred HHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH
Confidence 444555443344578999999999999999988764 6889999999999888654
No 189
>KOG0347|consensus
Probab=88.62 E-value=0.84 Score=35.58 Aligned_cols=44 Identities=11% Similarity=0.240 Sum_probs=38.4
Q ss_pred cEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHhc
Q psy9627 84 KTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
=.+||++|++-|..+...|.. .+|.+..|-|||.++..+..|+.
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~ 312 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ 312 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc
Confidence 389999999999999999865 49999999999999887777753
No 190
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=88.56 E-value=1.9 Score=26.18 Aligned_cols=46 Identities=7% Similarity=-0.010 Sum_probs=26.4
Q ss_pred CCceEEEEEcCccc----hHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHH
Q psy9627 52 HNIQQVVEVCAEHE----KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKS 101 (129)
Q Consensus 52 ~~i~~~~~~~~~~~----k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~ 101 (129)
.++...++.+.... .+..+.++++. .++++++||.|-.++-.+...
T Consensus 56 ~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~----~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 56 LGLQYVHIPVDGGAITEEDVEAFADALES----LPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp CT-EEEE----TTT--HHHHHHHHHHHHT----TTTSEEEE-SCSHHHHHHHHH
T ss_pred cCCeEEEeecCCCCCCHHHHHHHHHHHHh----CCCCEEEECCCChhHHHHHHH
Confidence 45777777776533 33444444543 467999999999998877654
No 191
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=88.25 E-value=0.86 Score=26.83 Aligned_cols=38 Identities=11% Similarity=0.366 Sum_probs=33.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEE-EecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAV-GIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~-~lhg~~~~ 118 (129)
...+++|+|.+-.+....+..|+..|+... .+.|++..
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~ 98 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDA 98 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHHH
Confidence 467999999999999999999999998886 78888754
No 192
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=87.93 E-value=1.6 Score=27.51 Aligned_cols=45 Identities=4% Similarity=0.104 Sum_probs=30.0
Q ss_pred EEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHH
Q psy9627 57 VVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102 (129)
Q Consensus 57 ~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L 102 (129)
.++..++......++.++++... ...+++|+|.+.+.++.+-+.|
T Consensus 5 ~Fy~l~~~~~~~~~c~L~~k~~~-~g~rv~V~~~d~~~a~~lD~~L 49 (137)
T PF04364_consen 5 DFYHLSSDDLERFACRLAEKAYR-QGQRVLVLCPDEEQAEALDELL 49 (137)
T ss_dssp EEEE-S----HHHHHHHHHHHHH-TT--EEEE-SSHHHHHHHHHHT
T ss_pred EEEEcCCCcHHHHHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHH
Confidence 45555555556788889987653 5689999999999999999998
No 193
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=87.79 E-value=4.2 Score=24.32 Aligned_cols=38 Identities=8% Similarity=0.111 Sum_probs=25.6
Q ss_pred CCCcEEEEeccc-c----cHHHHHHHHHhcCc---eEEEecCCCCh
Q psy9627 81 DENKTIIFAETK-R----KVDKITKSIQNYGW---AAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~-~----~~~~l~~~L~~~~~---~~~~lhg~~~~ 118 (129)
....++++|.+. . .+.++...|+..|+ .+..+-|++..
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~ 110 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKA 110 (113)
T ss_pred CCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhh
Confidence 346789999752 2 34566666766775 57888898753
No 194
>KOG0388|consensus
Probab=87.58 E-value=1 Score=36.33 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=56.4
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.-|+..|..+|..+. ...-++++|+.-.+..+.+-++|...|+....|-|.....+|.+++.+|
T Consensus 1027 SgKL~~LDeLL~kLk-aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDw 1090 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLK-AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDW 1090 (1185)
T ss_pred ccceeeHHHHHHHhh-cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhc
Confidence 347777888887764 4567999999999999999999999999999999999999999999988
No 195
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=87.03 E-value=4.6 Score=31.19 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=45.3
Q ss_pred cchH-HHHHHHHHhhh--cCCCCc-EEEEecccccHHHHHHHHHh----c-CceEEEecCCCChhHHHHHHhc
Q psy9627 64 HEKE-NKLFGLLNDIS--SKDENK-TIIFAETKRKVDKITKSIQN----Y-GWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 64 ~~k~-~~L~~ll~~~~--~~~~~~-~iVF~nt~~~~~~l~~~L~~----~-~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
.-|- .+++-+++.+. ...... +||.++|++-|..+++.+.. . ++.+..+.|+++...+...++.
T Consensus 77 sGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~ 149 (513)
T COG0513 77 TGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR 149 (513)
T ss_pred ChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc
Confidence 3353 33455566543 122223 99999999999999888864 3 5779999999998887777664
No 196
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=86.93 E-value=3 Score=32.65 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=39.6
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.+.++|.+++..-++.-.+.|+..|+++..+||+++..++..+++
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~ 97 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEK 97 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHH
Confidence 567899999999999889999999999999999999988776553
No 197
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.77 E-value=3.2 Score=31.59 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=39.7
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.+.+||.+++++-++.....|+..|+++..++|+.+..++..++.
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~ 95 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLT 95 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHH
Confidence 568999999999999999999999999999999999887766553
No 198
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.64 E-value=2.4 Score=31.28 Aligned_cols=38 Identities=8% Similarity=0.330 Sum_probs=32.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCc-eEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 118 (129)
+..+++++|++..++...+..|+..|+ ++..+.|++..
T Consensus 56 ~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 94 (376)
T PRK08762 56 RDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSA 94 (376)
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHH
Confidence 457899999998889999999999998 48899998754
No 199
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=86.50 E-value=11 Score=30.12 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=28.7
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhc-CceEEEecCCCC
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKS 117 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~-~~~~~~lhg~~~ 117 (129)
...++++|-+.|.+..+.+++.|... .+++ .++|+.+
T Consensus 468 ~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~-l~qg~~~ 505 (636)
T TIGR03117 468 KAQGGTLVLTTAFSHISAIGQLVELGIPAEI-VIQSEKN 505 (636)
T ss_pred HcCCCEEEEechHHHHHHHHHHHHhhcCCCE-EEeCCCc
Confidence 46789999999999999999999653 3444 5677653
No 200
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.14 E-value=1.1 Score=32.93 Aligned_cols=38 Identities=5% Similarity=0.274 Sum_probs=33.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+..+++|||++..++...+..|+..|++ +..+.|++..
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~ 351 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEG 351 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHH
Confidence 4568999999999999999999999996 7889999854
No 201
>KOG4439|consensus
Probab=85.75 E-value=2.2 Score=34.33 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=54.5
Q ss_pred EEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 58 VEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 58 ~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
|-......|+....+.++.+......+++|...=.....-+...++..|+....+||.....+|..+++.|
T Consensus 722 Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~F 792 (901)
T KOG4439|consen 722 FEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEF 792 (901)
T ss_pred cccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHH
Confidence 33333455777777888777555667777766555555667788899999999999999999999999987
No 202
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=85.63 E-value=5.7 Score=23.70 Aligned_cols=38 Identities=5% Similarity=0.189 Sum_probs=23.9
Q ss_pred CCCcEEEEec-ccccHHHHHHHHHh--------cC-ceEEEecCCCCh
Q psy9627 81 DENKTIIFAE-TKRKVDKITKSIQN--------YG-WAAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~n-t~~~~~~l~~~L~~--------~~-~~~~~lhg~~~~ 118 (129)
+..+++++|+ +..++...+..|.+ .| .++..+.|++..
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~ 108 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNA 108 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHH
Confidence 3468899997 44444444444322 24 469999999765
No 203
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=85.31 E-value=11 Score=26.58 Aligned_cols=69 Identities=13% Similarity=0.286 Sum_probs=43.0
Q ss_pred ccCccEEEeCCCCc-ccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCc
Q psy9627 35 LDSYIQINIGSLTL-SANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW 107 (129)
Q Consensus 35 ~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~ 107 (129)
+.+.+.+..++... .....++..++..+..+.. +..+-+.+ .+.+.+++|+++.++++...+.|++.|+
T Consensus 144 l~d~v~~~~~Dv~~~~~~~~vDav~LDmp~PW~~--le~~~~~L--kpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 144 LGDRVTLKLGDVREGIDEEDVDAVFLDLPDPWNV--LEHVSDAL--KPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred cccceEEEeccccccccccccCEEEEcCCChHHH--HHHHHHHh--CCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 33444444433221 1233666666666665432 33333332 2468999999999999999999998865
No 204
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=84.78 E-value=2.6 Score=29.72 Aligned_cols=51 Identities=6% Similarity=0.192 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecccc-cHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAETKR-KVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt~~-~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
..+..+++.+.-.+..++||||.+.. .+..++..|...|++ +..|.|+++.
T Consensus 73 ~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 125 (281)
T PRK11493 73 ETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAG 125 (281)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHH
Confidence 34555666543345678999998754 356677778888876 7888888754
No 205
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=84.71 E-value=3.2 Score=28.73 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=39.3
Q ss_pred CCCCcEEEEeccc-----------ccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 80 KDENKTIIFAETK-----------RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 80 ~~~~~~iVF~nt~-----------~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
.+.+-+||+.|.. ..++.+.+.|+..|+.|. ++-+++..+-.++++.|+
T Consensus 6 ~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~dlt~~em~~~l~~~~ 65 (241)
T smart00115 6 KPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVH-VKNNLTAEEMLEELKEFA 65 (241)
T ss_pred CCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHH
Confidence 3567888888763 468999999999999885 678899988888887764
No 206
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=84.40 E-value=2.5 Score=31.24 Aligned_cols=37 Identities=8% Similarity=0.286 Sum_probs=32.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce--EEEecCCCC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA--AVGIHGDKS 117 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~--~~~lhg~~~ 117 (129)
+..+++|+|.+-.++...+..|+..|+. +..+.||+.
T Consensus 331 ~~~~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 331 DGDNVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CCCcEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 3348999999999999999999999986 688999975
No 207
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=84.28 E-value=22 Score=29.32 Aligned_cols=106 Identities=7% Similarity=0.143 Sum_probs=66.4
Q ss_pred CceEEEEEecCcHHHHHHHHHhccC-ccEEEeCCCC-----------------------------cc-cCCC----ceEE
Q psy9627 13 DRQVLMWSATWPREVQKLAEDFLDS-YIQINIGSLT-----------------------------LS-ANHN----IQQV 57 (129)
Q Consensus 13 ~~Q~ll~SAT~~~~v~~~~~~~~~~-~~~i~~~~~~-----------------------------~~-~~~~----i~~~ 57 (129)
...++++-||+.+..-++++.+.++ ++.+.++.-. .. ..+. -...
T Consensus 180 ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 259 (824)
T PF02399_consen 180 AKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPT 259 (824)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccc
Confidence 4589999999999999998887653 4444332100 00 0000 0000
Q ss_pred EEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 58 VEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 58 ~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
--.....++....-.++..+ .....+.||++|...++.+++..+..+-++..++|.-+..+
T Consensus 260 ~~~~~~~~~~tF~~~L~~~L--~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d 320 (824)
T PF02399_consen 260 ATAAISNDETTFFSELLARL--NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED 320 (824)
T ss_pred cccccccchhhHHHHHHHHH--hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc
Confidence 00011123334444555554 35678889999999999999999999989999988776653
No 208
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=84.22 E-value=2.9 Score=30.17 Aligned_cols=51 Identities=4% Similarity=0.186 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecccc-cHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAETKR-KVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt~~-~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
..+..++......+..++||||.+.. .+.+++-.|+..|++ +..|.|+++.
T Consensus 89 ~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~ 141 (320)
T PLN02723 89 EAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPK 141 (320)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHH
Confidence 34555566543345679999997653 456777788888985 8899999754
No 209
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=83.94 E-value=2.4 Score=26.18 Aligned_cols=39 Identities=10% Similarity=0.232 Sum_probs=31.1
Q ss_pred CCCcEEEEeccccc---------HHHHHHHHHh---cCceEEEecCCCChh
Q psy9627 81 DENKTIIFAETKRK---------VDKITKSIQN---YGWAAVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~~~---------~~~l~~~L~~---~~~~~~~lhg~~~~~ 119 (129)
....+||||.+... +.++...|.. .+.++..|.||+..=
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w 124 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQF 124 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHH
Confidence 46799999977665 7788888887 567899999998653
No 210
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=83.33 E-value=7.4 Score=30.55 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=36.1
Q ss_pred CcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHh
Q psy9627 83 NKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.++||.++|++-|..+++.+.. .++.+..+||+.+.......++
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~ 132 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ 132 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh
Confidence 5899999999999888887754 4788999999998877665554
No 211
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=83.04 E-value=7.6 Score=29.35 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=40.8
Q ss_pred HHHHHHhhhcC-CCCcEEEEecccccHHHHHHHHHhc-----CceEEEecCCCChhHHHHHHh
Q psy9627 70 LFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 70 L~~ll~~~~~~-~~~~~iVF~nt~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~ 126 (129)
+.-++..+... ...+++|.|+|++-|..+++.++.. ++.+..++|+.+.....+.++
T Consensus 59 ~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~ 121 (460)
T PRK11776 59 GLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE 121 (460)
T ss_pred HHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc
Confidence 44455444222 2347999999999999988887652 688999999998876655543
No 212
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=83.02 E-value=7.8 Score=30.83 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=42.8
Q ss_pred cchHHH-HHHHHHhhhc-CCCCcEEEEecccccHHHHHHHHHh-----cCceEEEecCCCChhHHHHHHh
Q psy9627 64 HEKENK-LFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQN-----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 64 ~~k~~~-L~~ll~~~~~-~~~~~~iVF~nt~~~~~~l~~~L~~-----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.-|-.. ++-++..+.. ....++||.|+|++-|..+++.+.. .++.+..+||+.+.......++
T Consensus 54 sGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~ 123 (629)
T PRK11634 54 SGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 (629)
T ss_pred CcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc
Confidence 345433 3344444322 2345899999999999988887754 2789999999988766555543
No 213
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=82.57 E-value=1.6 Score=28.30 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=30.3
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcC----ceEEEecCCCChhHHHHHHhcC
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYG----WAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..++.++||++|-+..+.+.+.++..+ +++. .. +..++.+.++.|
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q---~~~~~~~~l~~~ 55 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQ---GSKSRDELLEEF 55 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-ES---TCCHHHHHHHHH
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ec---CcchHHHHHHHH
Confidence 357999999999999999999998653 3332 22 344555555544
No 214
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=82.42 E-value=2.8 Score=30.78 Aligned_cols=40 Identities=5% Similarity=0.154 Sum_probs=34.4
Q ss_pred CCCcEEEEec-ccccHHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 81 DENKTIIFAE-TKRKVDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 81 ~~~~~iVF~n-t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
+..+++|||. .-.++..++..|...|+.+..+.|++..-.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~awr 127 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAYR 127 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHHH
Confidence 4678999995 668899999999999999999999987754
No 215
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=82.14 E-value=4.3 Score=29.33 Aligned_cols=38 Identities=5% Similarity=0.164 Sum_probs=32.2
Q ss_pred CCcEEEEec-ccccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 82 ENKTIIFAE-TKRKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 82 ~~~~iVF~n-t~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
...++|||. +-.++...+..|+..|+.+..+.|++..-
T Consensus 74 ~~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~aw 112 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKAY 112 (311)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHHHH
Confidence 345999995 67889999999999999999999998543
No 216
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=82.02 E-value=6.3 Score=21.38 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=26.2
Q ss_pred EEEEe-cccccHHHHHHHHHhcCceEEEecCCCChhHHHHHH
Q psy9627 85 TIIFA-ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 85 ~iVF~-nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l 125 (129)
+.||. +.+..|......|++.|++...+.-..+.+.+.+..
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~ 43 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMI 43 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHH
Confidence 34555 556677777777777777777776666655555443
No 217
>KOG4150|consensus
Probab=81.93 E-value=11 Score=30.04 Aligned_cols=108 Identities=11% Similarity=0.083 Sum_probs=63.4
Q ss_pred CCceEEEEEecCcHHHHHHHHHh-ccCccEEEeCCCCcccCCCceEEEEEcCc---------cchHHHHHHHHHhhhcCC
Q psy9627 12 PDRQVLMWSATWPREVQKLAEDF-LDSYIQINIGSLTLSANHNIQQVVEVCAE---------HEKENKLFGLLNDISSKD 81 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~~-~~~~~~i~~~~~~~~~~~~i~~~~~~~~~---------~~k~~~L~~ll~~~~~~~ 81 (129)
.+-|++-+|||+.+.++-...-+ ++.-..|..... +..-+|.++.-++ ++|+.....++.++. .+
T Consensus 450 ~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS----Ps~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i-~~ 524 (1034)
T KOG4150|consen 450 INMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS----PSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMV-QH 524 (1034)
T ss_pred cCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC----CCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHH-Hc
Confidence 35799999999987777444332 122333333322 2455666665443 112222222332222 24
Q ss_pred CCcEEEEecccccHHHHHHHHHhc----C----ceEEEecCCCChhHHHHH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNY----G----WAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~----~----~~~~~lhg~~~~~~R~~~ 124 (129)
.-++|-||.+++-|+.+-...+.. | -.+..+-||-..++|.++
T Consensus 525 ~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKI 575 (1034)
T KOG4150|consen 525 GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKI 575 (1034)
T ss_pred CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHH
Confidence 679999999999999876655432 1 135678888888887765
No 218
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=81.15 E-value=2.4 Score=31.59 Aligned_cols=39 Identities=13% Similarity=0.347 Sum_probs=34.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 119 (129)
+..+++++|.+..++...+..|+..|++ +..+.|++..-
T Consensus 342 ~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W 381 (392)
T PRK07878 342 QDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAW 381 (392)
T ss_pred CCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHH
Confidence 4578999999999999999999999995 88999998654
No 219
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=81.04 E-value=8 Score=31.74 Aligned_cols=57 Identities=11% Similarity=0.158 Sum_probs=44.6
Q ss_pred CccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 62 AEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 62 ~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
....|+.+...-+.... ..++|+||-+.+.+..+.+++.|++.|++...|...-..+
T Consensus 410 t~~~K~~Aiv~~I~~~~-~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~ 466 (822)
T COG0653 410 TEEEKFKAIVEDIKERH-EKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAR 466 (822)
T ss_pred chHHHHHHHHHHHHHHH-hcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHH
Confidence 44667777665555442 4689999999999999999999999999987777665533
No 220
>PRK07411 hypothetical protein; Validated
Probab=80.56 E-value=2.6 Score=31.36 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=35.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQER 121 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 121 (129)
+..+++|||.+-.++...+..|+..|++...+.|++..=.+
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~~~~~l~GG~~~W~~ 381 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGIEGTNVKGGITAWSR 381 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCeEEecchHHHHHH
Confidence 35689999999999999999999999998889998866433
No 221
>PRK13766 Hef nuclease; Provisional
Probab=80.35 E-value=11 Score=30.54 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=37.7
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhc-Cc---eEEEecCCCChhHHHHHHh
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNY-GW---AAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~-~~---~~~~lhg~~~~~~R~~~l~ 126 (129)
...+++||.|+|+.-++...+.++.. ++ ++..++|+.+..+|.+..+
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~ 106 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE 106 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh
Confidence 35689999999999988777777653 44 7889999999998877654
No 222
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=80.23 E-value=8.6 Score=32.46 Aligned_cols=49 Identities=16% Similarity=0.288 Sum_probs=38.5
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhc----C-ceEEE-ecCCCChhHHHHHHhcC
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNY----G-WAAVG-IHGDKSQQERDYVLKVG 128 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~----~-~~~~~-lhg~~~~~~R~~~l~~~ 128 (129)
....++++-++|..-+...++.|+.. | +.+.. |||.|+.++++.+++.+
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i 177 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERI 177 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHH
Confidence 35589999999999888888888653 2 44333 99999999999998765
No 223
>KOG0330|consensus
Probab=79.88 E-value=9.8 Score=28.68 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhHH
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQER 121 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R 121 (129)
+.|..++++ .....++|.++|++-|..+++.+... |+.|..|=||++...-
T Consensus 118 PIl~~LL~~---p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q 172 (476)
T KOG0330|consen 118 PILQRLLQE---PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQ 172 (476)
T ss_pred HHHHHHHcC---CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHH
Confidence 344444442 34478999999999999998888764 7899999999987653
No 224
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=79.72 E-value=6.6 Score=32.21 Aligned_cols=39 Identities=33% Similarity=0.524 Sum_probs=30.4
Q ss_pred CCcEEEEecccccHHHHHHHHHhc-----CceEEEecCCCChhH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQE 120 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~ 120 (129)
.+++||||.+.+.|+.+.+.|... |-=+..+.|+-.+.+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q 469 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ 469 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH
Confidence 589999999999999999999764 333666777665554
No 225
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=79.60 E-value=4.6 Score=31.99 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=37.1
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
|..++....-.+..++|+||++-.++-..+-.|+..|++ +..|-|++..
T Consensus 211 l~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~e 260 (610)
T PRK09629 211 MPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGE 260 (610)
T ss_pred HHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHH
Confidence 445555432235579999999988888888889999986 8888888654
No 226
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=78.91 E-value=13 Score=30.19 Aligned_cols=80 Identities=10% Similarity=0.105 Sum_probs=42.2
Q ss_pred CCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCc-ccCCCceEEEEEcCccc-hH-----HHHHHHHHhhhcCCCCc
Q psy9627 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTL-SANHNIQQVVEVCAEHE-KE-----NKLFGLLNDISSKDENK 84 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~-k~-----~~L~~ll~~~~~~~~~~ 84 (129)
.+.++++-||| +.++-+....-.....+...+... ...+. ..++....+. +. ..|.+.+++-. ....+
T Consensus 348 ~~~pvvLgSAT--PSLES~~~~~~g~y~~~~L~~R~~~a~~p~--v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l-~~geQ 422 (730)
T COG1198 348 ENAPVVLGSAT--PSLESYANAESGKYKLLRLTNRAGRARLPR--VEIIDMRKEPLETGRSLSPALLEAIRKTL-ERGEQ 422 (730)
T ss_pred hCCCEEEecCC--CCHHHHHhhhcCceEEEEccccccccCCCc--ceEEeccccccccCccCCHHHHHHHHHHH-hcCCe
Confidence 35789999999 455555444323345555544331 11222 2333333321 11 33444444322 46789
Q ss_pred EEEEecccccHH
Q psy9627 85 TIIFAETKRKVD 96 (129)
Q Consensus 85 ~iVF~nt~~~~~ 96 (129)
+|+|.|.+--+-
T Consensus 423 ~llflnRRGys~ 434 (730)
T COG1198 423 VLLFLNRRGYAP 434 (730)
T ss_pred EEEEEccCCccc
Confidence 999999876543
No 227
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=78.71 E-value=14 Score=28.05 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=33.5
Q ss_pred CCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~ 124 (129)
..++||.++|++-|..+.+.++. .++.+..++|+.+-....+.
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~ 208 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ 208 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHH
Confidence 35899999999999988877764 47899999999876544333
No 228
>KOG0338|consensus
Probab=78.23 E-value=9.7 Score=29.80 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHhc
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
+.|-++|..=......++||.|+|++-+-.++...+. ..|.|+..-||++-++.+.+|..
T Consensus 238 PiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs 301 (691)
T KOG0338|consen 238 PILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS 301 (691)
T ss_pred HHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh
Confidence 4444555321123447999999999988776665544 37999999999999998888764
No 229
>KOG0339|consensus
Probab=78.22 E-value=8.6 Score=30.08 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=36.0
Q ss_pred CCcE-EEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHhcC
Q psy9627 82 ENKT-IIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 82 ~~~~-iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+++ +|.|+|++-|..+...-++ .|+.+.++||+++.-+..+.|+.+
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g 346 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEG 346 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcC
Confidence 3454 5566999999887766654 489999999999998877777643
No 230
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=78.18 E-value=11 Score=31.58 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=41.8
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
+..+++.+ ....+++|.++|+.-|+..++.+++ .++++..++|..+..++.+.++
T Consensus 490 l~a~l~al--~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~ 548 (926)
T TIGR00580 490 MRAAFKAV--LDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILK 548 (926)
T ss_pred HHHHHHHH--HhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHH
Confidence 33444443 2357999999999999998888765 3788999999999888776654
No 231
>PRK14701 reverse gyrase; Provisional
Probab=77.81 E-value=6 Score=35.04 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=38.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHh------cCceEEEecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN------YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~------~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
+..+++|.++|+.-+..+.+.++. .++.+..+||+++..++.++++
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~ 172 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLE 172 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHH
Confidence 456899999999999999998876 3577899999999988765543
No 232
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=77.59 E-value=13 Score=30.86 Aligned_cols=58 Identities=14% Similarity=0.284 Sum_probs=43.1
Q ss_pred HHHHHHHhhhcCCCCcEEEEecccccHH----HHHHHHHhcC--ceEEEecCCCChhHHHHHHh
Q psy9627 69 KLFGLLNDISSKDENKTIIFAETKRKVD----KITKSIQNYG--WAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 69 ~L~~ll~~~~~~~~~~~iVF~nt~~~~~----~l~~~L~~~~--~~~~~lhg~~~~~~R~~~l~ 126 (129)
++.-+++.+......++|++-+|++-++ ++.+.+...+ +.+..|+|+-.+.+|...++
T Consensus 102 FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~ 165 (851)
T COG1205 102 FLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIR 165 (851)
T ss_pred HHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHh
Confidence 3556666665556678899999976554 5666666666 89999999999999976654
No 233
>PF13245 AAA_19: Part of AAA domain
Probab=77.55 E-value=4.5 Score=22.68 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=34.9
Q ss_pred CccchHHHHHHHHHhhhc---CCCCcEEEEecccccHHHHHHHHHhcCce-EEEecC
Q psy9627 62 AEHEKENKLFGLLNDISS---KDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHG 114 (129)
Q Consensus 62 ~~~~k~~~L~~ll~~~~~---~~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg 114 (129)
++.-|-..+...+..+.. .+..+++|.+.|+..++.+.+.+ ..+.. +..+|+
T Consensus 19 pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl-~~~~~~~~T~h~ 74 (76)
T PF13245_consen 19 PGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL-GLGVPFAMTIHS 74 (76)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH-cCCCcchhhHHH
Confidence 445576666666654431 12678999999999999999999 33444 555654
No 234
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=77.23 E-value=15 Score=27.37 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=34.6
Q ss_pred CCcEEEEecccccHHHHHHHHH----hcCceEEEecCCCChhHHHHHHh
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQ----NYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
..++||.++|++-|..+.+.+. ..|+++..++|+.+.......++
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~ 131 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLE 131 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc
Confidence 3579999999999998876654 34899999999988666554443
No 235
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=76.39 E-value=8 Score=26.72 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=37.2
Q ss_pred CCCcEEEEecc------------cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 81 DENKTIIFAET------------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 81 ~~~~~iVF~nt------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
+.+-+||+.|. ...++.+++.|+..|+.|. .+-+++..+=.++++.|+
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~ 67 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVE-VKNNLTAEEILEELKEFA 67 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEE-EeCCCCHHHHHHHHHHHH
Confidence 55777887774 3458899999999999885 688888888888777653
No 236
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=75.89 E-value=11 Score=20.53 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=28.9
Q ss_pred cEEEEe-cccccHHHHHHHHHhcCceEEEecCCCChhHHHHH
Q psy9627 84 KTIIFA-ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 84 ~~iVF~-nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 124 (129)
++.||. +++..|...-..|.+.|++...+.=..+...+.+.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el 43 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAEL 43 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHH
Confidence 566666 55888888888888888887777655555545444
No 237
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=75.64 E-value=15 Score=23.52 Aligned_cols=42 Identities=2% Similarity=0.093 Sum_probs=32.8
Q ss_pred cEEEEecc-------cccHHHHHHHHHhcCceEEEecCCCChhHHHHHH
Q psy9627 84 KTIIFAET-------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 84 ~~iVF~nt-------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l 125 (129)
+++||+.| ...+..+-..|+..+++...+.=+|+...|++..
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~ 49 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELR 49 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHH
Confidence 46778765 8889999999999999888887777776666543
No 238
>KOG0329|consensus
Probab=75.55 E-value=6.9 Score=27.85 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=40.5
Q ss_pred HHHHHHhhhcCCC-CcEEEEecccccHHHHHHHHHh-----cCceEEEecCCCChhHHHHHHh
Q psy9627 70 LFGLLNDISSKDE-NKTIIFAETKRKVDKITKSIQN-----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 70 L~~ll~~~~~~~~-~~~iVF~nt~~~~~~l~~~L~~-----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.+..++++-+-+. -.++|-|+|++-|=.+...... -+.+++.+.||++-+.-++.+.
T Consensus 97 vl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk 159 (387)
T KOG0329|consen 97 VLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLK 159 (387)
T ss_pred ehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHh
Confidence 3455666533233 4789999999888777666543 3789999999999877666664
No 239
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=74.92 E-value=14 Score=29.16 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=39.4
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.+.+||.++++.-+....+.|+..|+.+..++|..+..++..+++
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~ 109 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMA 109 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Confidence 568999999999999999999999999999999999887766543
No 240
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=74.89 E-value=16 Score=29.39 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=37.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l 125 (129)
...+++|.++|..-|...++.+.. .|+.|+++.|+++.++|....
T Consensus 143 ~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y 191 (656)
T PRK12898 143 AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY 191 (656)
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc
Confidence 457999999999988877777654 599999999999998887654
No 241
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.05 E-value=11 Score=28.46 Aligned_cols=104 Identities=12% Similarity=0.078 Sum_probs=54.0
Q ss_pred hhhccCC-----CCceEEEEEecCcHH--HHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhh
Q psy9627 5 SRAMTYK-----PDRQVLMWSATWPRE--VQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDI 77 (129)
Q Consensus 5 ~il~~l~-----~~~Q~ll~SAT~~~~--v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~ 77 (129)
++++.++ .-++++|.|.|+... ++.++...-.+++.|....--..+ ++. .++ .....+..
T Consensus 98 ~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdT------r~~--d~~---~~~~vlt~-- 164 (429)
T PF10100_consen 98 DVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDT------RWS--DGE---QPNRVLTT-- 164 (429)
T ss_pred HHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccc------eec--cCC---Ccceehhh--
Confidence 4555554 457999999999766 445555444455555543211111 000 000 00000111
Q ss_pred hcCCCCcEEEEec--ccccHHHHHHHHHhcCceEEEecCCCChhHHHH
Q psy9627 78 SSKDENKTIIFAE--TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 78 ~~~~~~~~iVF~n--t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 123 (129)
.-++++-|-.+ .....++++..++..|+.+..+-.-+..+.|.-
T Consensus 165 --~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNi 210 (429)
T PF10100_consen 165 --AVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNI 210 (429)
T ss_pred --hhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhccc
Confidence 11233333332 234456777888888888887777777666653
No 242
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=73.74 E-value=19 Score=22.56 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=36.4
Q ss_pred HHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChh
Q psy9627 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQ 119 (129)
Q Consensus 72 ~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~ 119 (129)
.++..+...+..++|+.++++.-++...+.+... ++.+..+||+.+..
T Consensus 34 ~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (169)
T PF00270_consen 34 PALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSIS 85 (169)
T ss_dssp HHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHH
T ss_pred HHHhhhccCCCceEEEEeeccccccccccccccccccccccccccccccccc
Confidence 4444443334469999999999999999888764 46799999999855
No 243
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=73.36 E-value=25 Score=28.74 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=35.8
Q ss_pred CCCcEEEEecc----cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAET----KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt----~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
...++.|.+.+ +..+++....++..|+.|+++.++++..+|..+.+
T Consensus 118 ~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY~ 167 (764)
T PRK12326 118 QGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYA 167 (764)
T ss_pred cCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHc
Confidence 45667777766 45556666666778999999999999999998875
No 244
>KOG0331|consensus
Probab=73.32 E-value=10 Score=29.49 Aligned_cols=46 Identities=9% Similarity=0.134 Sum_probs=37.6
Q ss_pred CCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhHHHHHHhc
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
...+||-++|++-|.-+.+...+. ++++.+++|+.+...-...++.
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~ 214 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER 214 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc
Confidence 467999999999999999888764 5679999999988776666554
No 245
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=73.29 E-value=16 Score=21.52 Aligned_cols=58 Identities=9% Similarity=0.138 Sum_probs=39.6
Q ss_pred chHHHHHHHHHhhhc-CCCCcEEEEecccccHHHHHHHHHhcC---ceEEEecCCCChhHHH
Q psy9627 65 EKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYG---WAAVGIHGDKSQQERD 122 (129)
Q Consensus 65 ~k~~~L~~ll~~~~~-~~~~~~iVF~nt~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~R~ 122 (129)
-|-..+..++..... ....+++|.|++...+++..+.+.... ..+..++++....+..
T Consensus 12 GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 12 GKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred chhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 354444444433321 256899999999999999888876543 7888999987766543
No 246
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=73.22 E-value=9.4 Score=30.19 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=44.9
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhc
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
|+.-|-.+. ..+-+||--+=..-.+.=.+.|+..|++++.++|.++.++|..+++.
T Consensus 47 lCyQiPAll--~~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~ 102 (590)
T COG0514 47 LCYQIPALL--LEGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQ 102 (590)
T ss_pred hHhhhHHHh--cCCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHH
Confidence 444444332 36789999888888888888889999999999999999999988764
No 247
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=73.17 E-value=21 Score=29.13 Aligned_cols=46 Identities=11% Similarity=0.043 Sum_probs=37.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
...++.|-++|..-|...++.+.. .|+.++++.|+++.++|..+.+
T Consensus 96 ~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~ 145 (745)
T TIGR00963 96 TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA 145 (745)
T ss_pred hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC
Confidence 355799999998888877776654 5999999999999998877653
No 248
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=72.98 E-value=14 Score=23.69 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=33.9
Q ss_pred EEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHH
Q psy9627 58 VEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQ 103 (129)
Q Consensus 58 ~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~ 103 (129)
+|..++..-...++.|+++.. ....+++|-|.+..+++.|-+.|=
T Consensus 6 FY~l~~~~~~~~~c~L~~k~~-~~G~rvlI~~~d~~q~e~LD~~LW 50 (144)
T COG2927 6 FYLLSESTLLAAACRLAEKAW-RSGWRVLIQCEDEAQAEALDEHLW 50 (144)
T ss_pred EEEecchhHHHHHHHHHHHHH-HcCCeEEEEeCCHHHHHHHHHhhh
Confidence 444444444447888888664 357899999999999999999983
No 249
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=72.37 E-value=12 Score=27.98 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=35.9
Q ss_pred CCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHh
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
..++||.++|++-|..+++.+.. .++++..++|+.+...+...+.
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~ 121 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS 121 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc
Confidence 36899999999998887766543 5789999999998877766554
No 250
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=71.66 E-value=27 Score=29.24 Aligned_cols=46 Identities=7% Similarity=0.051 Sum_probs=35.2
Q ss_pred CCCcEEEEecc----cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAET----KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt----~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
...++-|.+.+ +..++++...++..|+.|+++.|++++.+|..+++
T Consensus 122 ~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~ 171 (913)
T PRK13103 122 SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA 171 (913)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc
Confidence 45666666766 44555666666778999999999999999998765
No 251
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=71.20 E-value=28 Score=23.25 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=27.5
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
+..+-||.|. ..+.+.+.++..++.+..|||..+.+.
T Consensus 49 ~~~VgVf~~~--~~~~I~~~~~~~~ld~vQLHG~e~~e~ 85 (197)
T PF00697_consen 49 PKIVGVFVNQ--SPEEILEIVEELGLDVVQLHGDESPEY 85 (197)
T ss_dssp SSEEEEESSS---HHHHHHHHHHCTESEEEE-SGG-HHH
T ss_pred CCEEEEEcCC--CHHHHHHHHHHcCCCEEEECCCCCHHH
Confidence 3478889864 677788888889999999999995544
No 252
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=70.78 E-value=20 Score=30.82 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=39.1
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhc
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
.+.+||.+++++-++.-...|...|+++..+.|+++..++.++++.
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~ 545 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQE 545 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHH
Confidence 5789999999999987777777889999999999998887776653
No 253
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=70.73 E-value=30 Score=23.42 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=31.1
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
..++-||+|. ..+.+.+.++..++.+..|||+.+...
T Consensus 53 ~~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHG~e~~~~ 89 (207)
T PRK13958 53 IDKVCVVVNP--DLTTIEHILSNTSINTIQLHGTESIDF 89 (207)
T ss_pred CCEEEEEeCC--CHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 4679999875 677888888889999999999988765
No 254
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=70.64 E-value=24 Score=31.23 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=37.4
Q ss_pred CCcEEEEecccccHHHHHHHHHh----------------cCceEEEecCCCChhHHHHHHh
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQN----------------YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~----------------~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
..++|+.+++++-+..+.+.|+. .++.+..+||+.++.+|.+.++
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~ 97 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR 97 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc
Confidence 35889999999999988887752 3789999999999999887654
No 255
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=70.62 E-value=18 Score=20.76 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=30.1
Q ss_pred CCCcEEEEec------ccccHHHHHHHHHhcCceEEEecCCCChhHHHH
Q psy9627 81 DENKTIIFAE------TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 81 ~~~~~iVF~n------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 123 (129)
...+++||.. .+..|..+.+.|+..|++...+-=..+...|..
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~ 54 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQG 54 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 3569999975 577888888999998887666543344444443
No 256
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=70.03 E-value=38 Score=27.97 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecc----cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAET----KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt----~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
..|...+... ...++-|-+.| +..++++...++..|+.|+++.|+++..+|..+.+
T Consensus 110 A~l~a~l~al---~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y~ 169 (796)
T PRK12906 110 ATLPVYLNAL---TGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAYN 169 (796)
T ss_pred HHHHHHHHHH---cCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHhc
Confidence 4444444432 45566666666 45566677777788999999999999999988765
No 257
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=69.64 E-value=32 Score=23.44 Aligned_cols=50 Identities=16% Similarity=0.316 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhhhcCC-CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 66 KENKLFGLLNDISSKD-ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 66 k~~~L~~ll~~~~~~~-~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
.......+.... + ...+-||+|. ..+++.+.+...++....|||..+++.
T Consensus 39 s~~~a~~i~~~v---~~~~~VgVf~n~--~~~~i~~i~~~~~ld~VQlHG~e~~~~ 89 (208)
T COG0135 39 SPEQAREIASAV---PKVKVVGVFVNE--SIEEILEIAEELGLDAVQLHGDEDPEY 89 (208)
T ss_pred CHHHHHHHHHhC---CCCCEEEEECCC--CHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 344455555543 2 3678899964 456777777888999999999988875
No 258
>KOG1001|consensus
Probab=68.91 E-value=7.6 Score=31.22 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=53.0
Q ss_pred ccchHHHHHHHHHhhhcCCC-CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 63 EHEKENKLFGLLNDISSKDE-NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 63 ~~~k~~~L~~ll~~~~~~~~-~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
...|+..+...+.... ... .+++||+.-..-+.-+...|...++....+-|.|.+.+|.+++.+|.
T Consensus 520 ~s~ki~~~~~~l~~~~-~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~ 586 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKE-MSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFP 586 (674)
T ss_pred hhhhhHHHHHHHhhcc-CCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccc
Confidence 4556666666665321 122 49999999999999999999999999999999999999999998874
No 259
>PRK02362 ski2-like helicase; Provisional
Probab=68.84 E-value=14 Score=29.86 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=38.0
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc---CceEEEecCCCChh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQ 119 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~---~~~~~~lhg~~~~~ 119 (129)
...+++.+ .+.+++++.+++++-|+...+.++.. |+++..++|+.+..
T Consensus 57 ~lail~~l--~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~ 107 (737)
T PRK02362 57 ELAMLKAI--ARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSR 107 (737)
T ss_pred HHHHHHHH--hcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcc
Confidence 34455554 24679999999999999999988765 89999999998654
No 260
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=68.59 E-value=9 Score=25.28 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=23.8
Q ss_pred CCCcEEEEecccc--cHHHHHHHHHhcCceEEEec
Q psy9627 81 DENKTIIFAETKR--KVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 81 ~~~~~iVF~nt~~--~~~~l~~~L~~~~~~~~~lh 113 (129)
...++++|+.... .+..+++.|...|+++..+.
T Consensus 81 ~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 4579999995543 57789999999999998887
No 261
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=68.02 E-value=15 Score=29.26 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=36.2
Q ss_pred HHHHHHHhhhcCCCCcEEEEeccc-ccHHHHHHHHHhcCc-eEEEecCCCCh
Q psy9627 69 KLFGLLNDISSKDENKTIIFAETK-RKVDKITKSIQNYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 69 ~L~~ll~~~~~~~~~~~iVF~nt~-~~~~~l~~~L~~~~~-~~~~lhg~~~~ 118 (129)
.+...+.++.-.+..++||||++. ..+-+++-.|+..|+ ++..|.|+++.
T Consensus 68 ~l~~~l~~lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~a 119 (610)
T PRK09629 68 DLEQLFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLA 119 (610)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHH
Confidence 344555554334567999999865 467788888888887 58899998765
No 262
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=67.45 E-value=42 Score=23.81 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecc----cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAET----KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt----~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
..+...+..+ ...++=|.|.+ ++.+++....++..|+.++.+.++++..+|.++.+
T Consensus 107 ~~l~a~~~AL---~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y~ 166 (266)
T PF07517_consen 107 AALPAALNAL---QGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAYA 166 (266)
T ss_dssp HHHHHHHHHT---TSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHHH
T ss_pred HHHHHHHHHH---hcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHHh
Confidence 3344455543 45677777755 55666777777888999999999999999888765
No 263
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=67.01 E-value=43 Score=25.01 Aligned_cols=89 Identities=9% Similarity=0.181 Sum_probs=55.0
Q ss_pred CceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEE-Ee--
Q psy9627 13 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTII-FA-- 89 (129)
Q Consensus 13 ~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iV-F~-- 89 (129)
.+.+.+-+.-+.+.+++++...+.--..|...+.. +.++...+.+.....+..|.+.++.+......++.+ |+
T Consensus 204 ~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA~~----~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi 279 (371)
T PRK14461 204 ARSMTVSTVGLVKGIRRLANERLPINLAISLHAPD----DALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLL 279 (371)
T ss_pred CCceEEEeecchhHHHHHHhcccCceEEEEeCCCC----HHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEE
Confidence 35566666667888888887654433344444333 444555665555556677777777664333333332 33
Q ss_pred ----cccccHHHHHHHHHhc
Q psy9627 90 ----ETKRKVDKITKSIQNY 105 (129)
Q Consensus 90 ----nt~~~~~~l~~~L~~~ 105 (129)
.+.+.|+.|++.|+..
T Consensus 280 ~gvNDs~e~A~~L~~llk~~ 299 (371)
T PRK14461 280 QGKNDHPEQAAALARLLRGE 299 (371)
T ss_pred CCCCCCHHHHHHHHHHHcCC
Confidence 6788999999999755
No 264
>KOG0352|consensus
Probab=66.27 E-value=5.4 Score=30.49 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=39.9
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhc
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
.+=+|||-+-..--..--+.|....++|..|.+.|+..+|.++|-+
T Consensus 61 ~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~D 106 (641)
T KOG0352|consen 61 GGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGD 106 (641)
T ss_pred CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHH
Confidence 4588999888877777778888899999999999999999998854
No 265
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=65.15 E-value=56 Score=24.49 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=63.1
Q ss_pred EEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccH
Q psy9627 16 VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKV 95 (129)
Q Consensus 16 ~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~ 95 (129)
.+-++.|+++-=+......+.. ....-+..+--+.+.-|-+.+.+.++... +..+.+.|-.+..+-|
T Consensus 91 ~L~W~G~Ls~~Q~~as~~l~q~------------i~~k~~~lv~AV~GaGKTEMif~~i~~al-~~G~~vciASPRvDVc 157 (441)
T COG4098 91 VLQWKGTLSPGQKKASNQLVQY------------IKQKEDTLVWAVTGAGKTEMIFQGIEQAL-NQGGRVCIASPRVDVC 157 (441)
T ss_pred eeeeccccChhHHHHHHHHHHH------------HHhcCcEEEEEecCCCchhhhHHHHHHHH-hcCCeEEEecCcccch
Confidence 7778888887655444332210 01111223333455566666767776543 3578999999999999
Q ss_pred HHHHHHHHhc--CceEEEecCCCChhHHH
Q psy9627 96 DKITKSIQNY--GWAAVGIHGDKSQQERD 122 (129)
Q Consensus 96 ~~l~~~L~~~--~~~~~~lhg~~~~~~R~ 122 (129)
-+++..|+.. ++...++||+-++..|.
T Consensus 158 lEl~~Rlk~aF~~~~I~~Lyg~S~~~fr~ 186 (441)
T COG4098 158 LELYPRLKQAFSNCDIDLLYGDSDSYFRA 186 (441)
T ss_pred HHHHHHHHHhhccCCeeeEecCCchhccc
Confidence 9999999874 68899999998887763
No 266
>PLN02363 phosphoribosylanthranilate isomerase
Probab=64.96 E-value=46 Score=23.43 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=30.0
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
..++-||+| ...+.+.+.++..++.+..|||..+...
T Consensus 100 ~~~VgVfv~--~~~~~I~~~~~~~~ld~VQLHG~e~~~~ 136 (256)
T PLN02363 100 AKPVGVFVD--DDANTILRAADSSDLELVQLHGNGSRAA 136 (256)
T ss_pred ccEEEEEeC--CCHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 456899986 4566888888889999999999988654
No 267
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=64.10 E-value=12 Score=26.98 Aligned_cols=39 Identities=10% Similarity=0.307 Sum_probs=33.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 119 (129)
...+++.||.--=+||..+.+|...|++ |..|+||.-..
T Consensus 171 ~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y 210 (308)
T COG1054 171 KDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKY 210 (308)
T ss_pred cCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHH
Confidence 4459999999999999999999999985 99999986443
No 268
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=63.39 E-value=49 Score=27.77 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=37.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l 125 (129)
....+.|-++|..-|...++.+.. .|+.|.++.|+++..+|...+
T Consensus 122 ~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y 170 (896)
T PRK13104 122 SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY 170 (896)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh
Confidence 345799999999888887777754 589999999999999887765
No 269
>PRK10689 transcription-repair coupling factor; Provisional
Probab=63.10 E-value=37 Score=29.28 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=38.8
Q ss_pred CCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
...+++|-|+|+.-|..+++.++. .++.+..++|..+..++.++++
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~ 697 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILA 697 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHH
Confidence 467999999999999998888865 2578889999999998887764
No 270
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=62.76 E-value=50 Score=23.35 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=42.7
Q ss_pred chHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 65 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 65 ~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.|.......+.........+.||=+.+-+.+..++..-+..|++|..+-..-...++...++.+
T Consensus 47 ~Kdr~a~~~l~~~~~~~~~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~ 110 (304)
T cd01562 47 FKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAY 110 (304)
T ss_pred cHHHhHHHHHHhcCHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHc
Confidence 4555555555443222234566667788888888888888999988887766666666666655
No 271
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=62.64 E-value=8.8 Score=21.76 Aligned_cols=26 Identities=12% Similarity=0.373 Sum_probs=22.8
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYG 106 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~ 106 (129)
..|+++|++.+.+.|+..+..+...|
T Consensus 46 ~~G~avv~~~~~e~ae~~~~~l~~~g 71 (82)
T PF02617_consen 46 REGRAVVGTGSREEAEEYAEKLQRAG 71 (82)
T ss_dssp HHSEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred HcCCEeeeeCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999998776
No 272
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=62.00 E-value=15 Score=19.68 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=19.2
Q ss_pred EEEEecccccHHHHHHHHHhcCceEEEec
Q psy9627 85 TIIFAETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
.|..+++.-.|+.+...|+..||++....
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~ 30 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKN 30 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEC
Confidence 46677888889999999999999987543
No 273
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=61.58 E-value=17 Score=31.22 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=35.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc----Cce---EEEecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY----GWA---AVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~----~~~---~~~lhg~~~~~~R~~~l~ 126 (129)
...+++|.++|+.-|..+++.++.. |+. +..+||+++..+|...++
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~ 172 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFME 172 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHH
Confidence 4578999999999999988887653 444 346899999988766543
No 274
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=61.53 E-value=59 Score=23.47 Aligned_cols=47 Identities=4% Similarity=-0.046 Sum_probs=38.7
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
.+.||=+.+-+.+..++..-+..|++|..+-..-....+...++.|+
T Consensus 51 ~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~G 97 (316)
T cd06448 51 CVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEG 97 (316)
T ss_pred CCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcC
Confidence 56777777888888888888889999999999888788888877664
No 275
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=61.41 E-value=31 Score=20.17 Aligned_cols=36 Identities=6% Similarity=0.135 Sum_probs=27.9
Q ss_pred ccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 91 TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 91 t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
++++++++-..|...+++...+.=.++...|.+..+
T Consensus 15 ~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~ 50 (92)
T cd03030 15 IKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRE 50 (92)
T ss_pred HHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHH
Confidence 367778888888888888888877788888776554
No 276
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=61.27 E-value=28 Score=25.04 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHhhh----cCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHH
Q psy9627 64 HEKENKLFGLLNDIS----SKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQER 121 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~----~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 121 (129)
..|+..|.+++..+. ...+-.++|.++..+..+.+-.+|...++...-+.|.+-..+.
T Consensus 95 S~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~ 156 (297)
T PF11496_consen 95 SGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEK 156 (297)
T ss_dssp -HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S-
T ss_pred CchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCcc
Confidence 568999988888762 2445799999999999999999999999999999988665543
No 277
>PRK13767 ATP-dependent helicase; Provisional
Probab=61.23 E-value=44 Score=27.89 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=34.3
Q ss_pred CcEEEEecccccHHHHHHHHHh---------------c-CceEEEecCCCChhHHHHHHh
Q psy9627 83 NKTIIFAETKRKVDKITKSIQN---------------Y-GWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~---------------~-~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.++|+.+++++-+..+...|.. . ++.+...||+.++.+|.+.++
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~ 144 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK 144 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh
Confidence 4689999999998877664431 1 678999999999999876654
No 278
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=60.99 E-value=23 Score=19.46 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=18.3
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEE
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~ 110 (129)
..+|.++|...|-...+.|+..|+++.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 356666677777777777777766544
No 279
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=60.79 E-value=32 Score=20.12 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=30.3
Q ss_pred CCCcEEEEe------cccccHHHHHHHHHhcCceEEEecCCCChhHHHH
Q psy9627 81 DENKTIIFA------ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 81 ~~~~~iVF~------nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 123 (129)
...+++||. +.+-.|..+-+.|...|++...+-=.-+...|..
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~ 58 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQG 58 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 457999996 3588888999999999888665543334444444
No 280
>KOG0386|consensus
Probab=60.16 E-value=14 Score=31.11 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=56.0
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
.-|+..|.+++..+. ....+++.||.-..-.+-+-.+|.-.+++...+-|.-...+|...++.|+
T Consensus 709 sGKfELLDRiLPKLk-atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN 773 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLK-ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFN 773 (1157)
T ss_pred ccHHHHHHhhhHHHH-hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhc
Confidence 347777777887664 35689999999888999999999999999999999999999999998885
No 281
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=59.95 E-value=56 Score=27.08 Aligned_cols=45 Identities=7% Similarity=0.068 Sum_probs=36.0
Q ss_pred CCCcEEEEecccccHHHHHHHH----HhcCceEEEecCCCC-hhHHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSI----QNYGWAAVGIHGDKS-QQERDYVL 125 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L----~~~~~~~~~lhg~~~-~~~R~~~l 125 (129)
...++.|.++|..-|...++.+ +..|+.|+++.|+++ .++|..+.
T Consensus 118 ~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y 167 (790)
T PRK09200 118 EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY 167 (790)
T ss_pred cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc
Confidence 4678999999988777666665 456999999999999 88877654
No 282
>KOG0340|consensus
Probab=59.61 E-value=15 Score=27.38 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=37.8
Q ss_pred HHHHhhhcCCC-CcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhHHH
Q psy9627 72 GLLNDISSKDE-NKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERD 122 (129)
Q Consensus 72 ~ll~~~~~~~~-~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~ 122 (129)
-+++.+...+. .=++||++|++-|-.+++.+... ++++..+.|++++-.-.
T Consensus 64 Pil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa 119 (442)
T KOG0340|consen 64 PILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQA 119 (442)
T ss_pred HHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhh
Confidence 34444433333 36789999999999999999764 68899999999875443
No 283
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=59.02 E-value=41 Score=21.33 Aligned_cols=40 Identities=10% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCC
Q psy9627 67 ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 67 ~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
.+.+.....+ .+..+|.+|.+ +|.+.+++.|+|+..++|+
T Consensus 87 De~i~~~a~~-----~~~~iVaTnD~----eLk~rlr~~GIPvi~lr~r 126 (136)
T COG1412 87 DECLLEAALK-----HGRYIVATNDK----ELKRRLRENGIPVITLRQR 126 (136)
T ss_pred HHHHHHHHHH-----cCCEEEEeCCH----HHHHHHHHcCCCEEEEeCC
Confidence 4445444443 34899999854 5777788889999999965
No 284
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=58.91 E-value=63 Score=26.95 Aligned_cols=45 Identities=11% Similarity=0.041 Sum_probs=34.7
Q ss_pred CCcEEEEecccccHHHHHHHH----HhcCceEEEecCCCChhHHHHHHh
Q psy9627 82 ENKTIIFAETKRKVDKITKSI----QNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
..++-|.+.|..-|...++.+ +..|+.|+++.|+++..+|..+++
T Consensus 122 G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~ 170 (830)
T PRK12904 122 GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA 170 (830)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC
Confidence 446778888876666555555 456999999999999999987753
No 285
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=58.62 E-value=54 Score=26.56 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhcCCCCcEEEEecccccHHHHHH----HHHhcCceEEEecCCCChhHHHHHHhc
Q psy9627 67 ENKLFGLLNDISSKDENKTIIFAETKRKVDKITK----SIQNYGWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 67 ~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~----~L~~~~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
+.+++.++..+ ....++..-++|-=-|+-.++ .|...|+.++.+.|.+.-.+|.++++.
T Consensus 298 vVA~laml~ai--~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~ 360 (677)
T COG1200 298 VVALLAMLAAI--EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQ 360 (677)
T ss_pred HHHHHHHHHHH--HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHH
Confidence 44555556554 356799999999666655544 445569999999999999999998763
No 286
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=58.55 E-value=26 Score=24.56 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=40.9
Q ss_pred CCceEEEEEcCccc-hHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 52 HNIQQVVEVCAEHE-KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 52 ~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
..++-.++.+++.+ -+..+...|+ .+.+.+.+|+++.++++...+.|++.|+.
T Consensus 112 ~~~DavfLDlp~Pw~~i~~~~~~L~----~~gG~i~~fsP~ieQv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 112 SDFDAVFLDLPDPWEAIPHAKRALK----KPGGRICCFSPCIEQVQKTVEALREHGFT 165 (247)
T ss_dssp TSEEEEEEESSSGGGGHHHHHHHE-----EEEEEEEEEESSHHHHHHHHHHHHHTTEE
T ss_pred CcccEEEEeCCCHHHHHHHHHHHHh----cCCceEEEECCCHHHHHHHHHHHHHCCCe
Confidence 56778888888866 4455555552 25689999999999999999999998764
No 287
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=58.33 E-value=47 Score=26.73 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=29.7
Q ss_pred CCcEEEEecccccHHHHHHHHHhc-----CceEEEecCCCChh
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQ 119 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~ 119 (129)
.++++|||.++..|..+.+.|.+. +..+..++|+.+..
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~ 556 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDD 556 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccch
Confidence 589999999999999999988654 34566777765443
No 288
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=57.77 E-value=67 Score=24.45 Aligned_cols=52 Identities=10% Similarity=0.165 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecc----c-ccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAET----K-RKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt----~-~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
..+...+.++++.+ +..-+|.|++. - -....+.+.+++.|+|+..|.|++..
T Consensus 347 ~~R~~~l~~li~e~---~vDGVI~~~~~~C~~~s~e~~~ik~~l~~~GIP~L~ietD~~d 403 (430)
T TIGR03191 347 RIKSEMMLNIARDW---NVDGCMLHLNRGCEGLSIGIMENRLAIAKAGIPIMTFEGNMGD 403 (430)
T ss_pred hHHHHHHHHHHHHH---CCCEEEEcCCCCCccchHhHHHHHHHHHHcCCCEEEEECCCCC
Confidence 56888888888875 45667765532 2 13335667788889999999999887
No 289
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=57.26 E-value=9.7 Score=24.73 Aligned_cols=38 Identities=3% Similarity=0.006 Sum_probs=26.9
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
+.+.+++..++......+.+.|++.|+.+..+...--.
T Consensus 132 ~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 132 EGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred CCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeecC
Confidence 34555555566666999999999999987776654333
No 290
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=56.92 E-value=75 Score=24.12 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=32.7
Q ss_pred CcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHH
Q psy9627 83 NKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~ 123 (129)
.++||.++|++-|..+.+.++. .++.+..++|+.+......
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 120 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH
Confidence 3799999999999888887764 3788899999988765443
No 291
>KOG0953|consensus
Probab=56.90 E-value=47 Score=26.46 Aligned_cols=48 Identities=15% Similarity=0.123 Sum_probs=36.3
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChhHHHHHHhcC
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~l~~~ 128 (129)
..++-+||=+ |++.-=.+...+.+.|.. |+.++|+++++-|.+--..|
T Consensus 355 lk~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~F 403 (700)
T KOG0953|consen 355 LKPGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALF 403 (700)
T ss_pred CCCCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHh
Confidence 3556666544 677777888888888766 99999999999887755444
No 292
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=56.88 E-value=19 Score=22.43 Aligned_cols=37 Identities=14% Similarity=0.357 Sum_probs=30.5
Q ss_pred CCCcEEE---EecccccHHHHHHHHHhcCceEEEecCCCC
Q psy9627 81 DENKTII---FAETKRKVDKITKSIQNYGWAAVGIHGDKS 117 (129)
Q Consensus 81 ~~~~~iV---F~nt~~~~~~l~~~L~~~~~~~~~lhg~~~ 117 (129)
..+++++ |+=+.++++.+-..|++.||.+..||.-+-
T Consensus 53 ~~G~A~~~Gd~vll~~EV~pvi~aL~~~GI~vtAlHNH~l 92 (123)
T PF07485_consen 53 GDGKAMVMGDFVLLEDEVNPVISALRKNGIEVTALHNHWL 92 (123)
T ss_pred CCCcEEEeecEEecHHHHHHHHHHHHHCCceEEEEecccc
Confidence 3457777 667788999999999999999999998653
No 293
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=56.64 E-value=27 Score=18.01 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=25.3
Q ss_pred EEEe-cccccHHHHHHHHHhcCceEEEecCCCChhHHHHHH
Q psy9627 86 IIFA-ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 86 iVF~-nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l 125 (129)
++|. .++..|...-+.|+..|++...+.=+.+...|+...
T Consensus 2 ~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~ 42 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELK 42 (60)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHH
T ss_pred EEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHH
Confidence 3444 567777777778877777766665555555554443
No 294
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=55.82 E-value=61 Score=21.85 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=33.5
Q ss_pred HHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCC
Q psy9627 69 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 69 ~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
.....++........-+||+.........+.+.+...|+++..+...
T Consensus 43 ~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 43 EQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 33344444433456677777777777777888899999999999887
No 295
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.68 E-value=39 Score=25.09 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=54.4
Q ss_pred CCCCceEEEEEecCcHH--HHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEE
Q psy9627 10 YKPDRQVLMWSATWPRE--VQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTII 87 (129)
Q Consensus 10 l~~~~Q~ll~SAT~~~~--v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iV 87 (129)
++.-+.+++.|+|+... +.++..+.-.+.+.|....--..+ .++.-+. -...|-..+++ + |
T Consensus 110 L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dT------k~id~~~--p~~alTkavKk-------r--i 172 (431)
T COG4408 110 LPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADT------KYIDAEQ--PNRALTKAVKK-------R--I 172 (431)
T ss_pred hccccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccc------eeecccC--cchHHHHHHhH-------h--e
Confidence 35667899999999766 455555554565666554322111 2222111 12223233321 1 1
Q ss_pred Ee----cccccHHHHHHHHHhcCceEEEecCCCChhHHH
Q psy9627 88 FA----ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERD 122 (129)
Q Consensus 88 F~----nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~ 122 (129)
|. .....|+.+.+.+...||.+....+-+-.+.|.
T Consensus 173 Ylgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrn 211 (431)
T COG4408 173 YLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRN 211 (431)
T ss_pred eeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcc
Confidence 11 235678889999999999988877766666554
No 296
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=55.49 E-value=33 Score=18.73 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=20.3
Q ss_pred cccccHHHHHHHHHhcCceEEEecCCCChhHHHHH
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 124 (129)
+++..|...-..|++.|++...+.-..+...+++.
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~ 41 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEM 41 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHH
Confidence 45556666666666666666665555555444443
No 297
>PLN02356 phosphateglycerate kinase
Probab=55.11 E-value=93 Score=23.75 Aligned_cols=48 Identities=10% Similarity=0.101 Sum_probs=41.0
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
++.+|+...+-+.+..++..-+..|+++..+-..-...+|.+.++.++
T Consensus 103 ~~g~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~G 150 (423)
T PLN02356 103 PGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALG 150 (423)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcC
Confidence 456788889999999999999999999999988877788888887764
No 298
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=54.79 E-value=74 Score=27.16 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=44.6
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecc---cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAET---KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt---~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
..|...+..+ ...+=-||-+|. ++.++|.....+-.|+.|+++..+|+..+|..+..
T Consensus 168 atlp~yLnAL--~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~aY~ 227 (1025)
T PRK12900 168 STLPTFLNAL--TGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQYL 227 (1025)
T ss_pred hHHHHHHHHH--cCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHHhCC
Confidence 4455555554 355667777775 78889999999999999999999999999988754
No 299
>PRK15327 type III secretion system needle complex protein PrgH; Provisional
Probab=54.52 E-value=69 Score=24.19 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=35.8
Q ss_pred ccchHHHHHHHHHhhh------cCCCCcEEEEecccccHHHHHHHHHhcCc--eEEEe
Q psy9627 63 EHEKENKLFGLLNDIS------SKDENKTIIFAETKRKVDKITKSIQNYGW--AAVGI 112 (129)
Q Consensus 63 ~~~k~~~L~~ll~~~~------~~~~~~~iVF~nt~~~~~~l~~~L~~~~~--~~~~l 112 (129)
.+.|+..|-.+|..-. ....+.+.|.++|.+.++|..+.|.+.+. ++..+
T Consensus 168 ~~~~v~tL~~~L~g~~~p~~Il~grD~~iyVLa~~qrd~~W~~Q~L~k~~~~~~v~v~ 225 (393)
T PRK15327 168 PQRQAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQSLARGDYDKNARVI 225 (393)
T ss_pred hHHHHHHHHHHhcCCCCceEEEeCCCCcEEEEEccccHhHHHHHHHhhCCCcCceEEe
Confidence 3447888888886321 23456899999999999999999987655 45444
No 300
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=54.16 E-value=61 Score=21.38 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc--CceEEEecCCCChhHHHHHHh
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~ 126 (129)
+.+..+++... ...-++.++-.+...++...+.|++. |+.+...||-++..+..++++
T Consensus 35 dl~~~l~~~~~-~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~ 94 (177)
T TIGR00696 35 DLMEELCQRAG-KEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALA 94 (177)
T ss_pred HHHHHHHHHHH-HcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHH
Confidence 44445555431 23346667778888889999999775 777777799998776555443
No 301
>PRK07476 eutB threonine dehydratase; Provisional
Probab=54.12 E-value=81 Score=22.76 Aligned_cols=66 Identities=11% Similarity=0.045 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
..|......++.........+.||=..+-+.+..++..=+..|++|..+-..-....+...++.|+
T Consensus 48 S~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~G 113 (322)
T PRK07476 48 SFKLRGATNALLSLSAQERARGVVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALG 113 (322)
T ss_pred CchHHHHHHHHHhhhhhhhCCeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcC
Confidence 346655444443322222344466667888888888888889999998888777677777776653
No 302
>KOG0383|consensus
Probab=54.04 E-value=8 Score=31.15 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=52.4
Q ss_pred chHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 65 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 65 ~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.|...|...++.+. ....+++||..-...-+.+-+++...+ +...+-|.-...+|..+++.|
T Consensus 615 ~k~~~l~~~~~~l~-~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~ 676 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLK-SSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRF 676 (696)
T ss_pred HHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhcccc
Confidence 35666666666653 456799999999999999999999999 999999999999999999877
No 303
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=53.89 E-value=24 Score=22.70 Aligned_cols=36 Identities=11% Similarity=0.267 Sum_probs=26.7
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcC
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG 106 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~ 106 (129)
|.+++++.. ....++||-.+|+--++++.++|+..+
T Consensus 22 lp~~~~~~i-~~~~rvLvL~PTRvva~em~~aL~~~~ 57 (148)
T PF07652_consen 22 LPEIVREAI-KRRLRVLVLAPTRVVAEEMYEALKGLP 57 (148)
T ss_dssp HHHHHHHHH-HTT--EEEEESSHHHHHHHHHHTTTSS
T ss_pred cHHHHHHHH-HccCeEEEecccHHHHHHHHHHHhcCC
Confidence 555665443 357899999999999999999997654
No 304
>KOG1615|consensus
Probab=53.65 E-value=18 Score=24.63 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=24.4
Q ss_pred cccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 92 KRKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 92 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
...+.++...|++.|..++.++|+..+-
T Consensus 90 T~Gi~eLv~~L~~~~~~v~liSGGF~~~ 117 (227)
T KOG1615|consen 90 TPGIRELVSRLHARGTQVYLISGGFRQL 117 (227)
T ss_pred CCCHHHHHHHHHHcCCeEEEEcCChHHH
Confidence 3468899999999999999999998763
No 305
>PTZ00110 helicase; Provisional
Probab=53.52 E-value=44 Score=26.16 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=33.8
Q ss_pred CCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhHHHHHH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l 125 (129)
...+||.++|++-|+.+.+.++.. ++.+..++|+.+.......+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l 250 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL 250 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH
Confidence 346899999999999888887763 57888999998766544444
No 306
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=52.90 E-value=83 Score=22.54 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhcCCCCcEEEEecc-cccHHHHHHHHH
Q psy9627 67 ENKLFGLLNDISSKDENKTIIFAET-KRKVDKITKSIQ 103 (129)
Q Consensus 67 ~~~L~~ll~~~~~~~~~~~iVF~nt-~~~~~~l~~~L~ 103 (129)
...|...+..+ .+.+.+|||-+- -..++++++.+-
T Consensus 166 ~elLk~~I~~l--k~~GatIifSsH~Me~vEeLCD~ll 201 (300)
T COG4152 166 VELLKDAIFEL--KEEGATIIFSSHRMEHVEELCDRLL 201 (300)
T ss_pred HHHHHHHHHHH--HhcCCEEEEecchHHHHHHHhhhhh
Confidence 34566666655 467899999854 467888888774
No 307
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=52.33 E-value=40 Score=18.74 Aligned_cols=12 Identities=17% Similarity=-0.009 Sum_probs=5.5
Q ss_pred HhcCceEEEecC
Q psy9627 103 QNYGWAAVGIHG 114 (129)
Q Consensus 103 ~~~~~~~~~lhg 114 (129)
...|++...+=|
T Consensus 48 ~~~g~~~~iiig 59 (91)
T cd00860 48 QLQKIPYILVVG 59 (91)
T ss_pred HHcCCCEEEEEC
Confidence 344555444444
No 308
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=52.14 E-value=77 Score=23.54 Aligned_cols=52 Identities=12% Similarity=0.300 Sum_probs=35.4
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecc-----cccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAET-----KRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt-----~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
..+...+..++++. +..-+|.|++. --....+.+.+++.|+|+..+.++.+.
T Consensus 299 ~~R~~~i~~lv~~~---~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~~ 355 (377)
T TIGR03190 299 HTRYDHVLGLAKEY---NVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDITN 355 (377)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCCC
Confidence 45777788888764 44555554422 222335778888899999999999874
No 309
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=52.02 E-value=64 Score=20.98 Aligned_cols=46 Identities=13% Similarity=0.312 Sum_probs=31.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc--CceEE-EecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY--GWAAV-GIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~--~~~~~-~lhg~~~~~~R~~~l~ 126 (129)
...++.++-.+...++.+.+.|++. |+.+. ..||-++..+-.++++
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~ 95 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIIN 95 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHH
Confidence 3456666667778888888888776 67765 4556576666655554
No 310
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=51.87 E-value=74 Score=21.68 Aligned_cols=65 Identities=9% Similarity=0.036 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHhhhcCC--CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKD--ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~--~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|......++....... +..+||=..+-+.+..++...+..|+++..+-..-....+...++.+
T Consensus 29 S~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~ 95 (244)
T cd00640 29 SFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRAL 95 (244)
T ss_pred CcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHC
Confidence 446655555554332222 24566655666888888888888999999888876666666666554
No 311
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=51.62 E-value=22 Score=21.98 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=12.7
Q ss_pred cccccHHHHHHHHHhcCceEEE
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVG 111 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~ 111 (129)
||...|+.+++.|++.|+++..
T Consensus 9 ~te~~A~~ia~~l~~~g~~~~~ 30 (143)
T PF00258_consen 9 NTEKMAEAIAEGLRERGVEVRV 30 (143)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHHHHHcCCceee
Confidence 4555666666666666655443
No 312
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=51.57 E-value=57 Score=20.28 Aligned_cols=82 Identities=9% Similarity=0.003 Sum_probs=45.5
Q ss_pred EEEEEecCcHHHHHHHHHhccCccEEEeCCCCcc-------------cCCCceEEEEEcCcc----chHHHHHHHHHhhh
Q psy9627 16 VLMWSATWPREVQKLAEDFLDSYIQINIGSLTLS-------------ANHNIQQVVEVCAEH----EKENKLFGLLNDIS 78 (129)
Q Consensus 16 ~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~-------------~~~~i~~~~~~~~~~----~k~~~L~~ll~~~~ 78 (129)
.+.+|.-++++-.+.+.. +.-...|+..+..+. ...++....+.+... .....+..+++
T Consensus 8 ~~~~s~qlt~~d~~~L~~-~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~--- 83 (135)
T TIGR01244 8 HLYVSPQLTKADAAQAAQ-LGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIG--- 83 (135)
T ss_pred CeeEcCCCCHHHHHHHHH-CCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHH---
Confidence 356677666554333333 233345555443211 013556655554442 23344444554
Q ss_pred cCCCCcEEEEecccccHHHHHHHH
Q psy9627 79 SKDENKTIIFAETKRKVDKITKSI 102 (129)
Q Consensus 79 ~~~~~~~iVF~nt~~~~~~l~~~L 102 (129)
..++++++||.|-+++-.++..+
T Consensus 84 -~~~~pvL~HC~sG~Rt~~l~al~ 106 (135)
T TIGR01244 84 -AAEGPVLAYCRSGTRSSLLWGFR 106 (135)
T ss_pred -hCCCCEEEEcCCChHHHHHHHHH
Confidence 34689999999999888877654
No 313
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=50.64 E-value=44 Score=24.20 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=34.3
Q ss_pred HHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc-CceEEEecCCCC
Q psy9627 71 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKS 117 (129)
Q Consensus 71 ~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~-~~~~~~lhg~~~ 117 (129)
..+++.+......++++.++++.-++..++.++.. |-.+..+||+..
T Consensus 18 ~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~ 65 (358)
T TIGR01587 18 LWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSS 65 (358)
T ss_pred HHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHH
Confidence 33444332234578888899999999999999875 667788888754
No 314
>PRK05568 flavodoxin; Provisional
Probab=49.99 E-value=28 Score=21.47 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=14.8
Q ss_pred cccccHHHHHHHHHhcCceEEEe
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGI 112 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~l 112 (129)
||.+.|+.+++.+...|+.+..+
T Consensus 14 nT~~~a~~i~~~~~~~g~~v~~~ 36 (142)
T PRK05568 14 NTEAMANLIAEGAKENGAEVKLL 36 (142)
T ss_pred hHHHHHHHHHHHHHHCCCeEEEE
Confidence 66666777777766666655444
No 315
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=49.90 E-value=96 Score=22.39 Aligned_cols=66 Identities=11% Similarity=-0.013 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
..|..-...++.........+.+|=..+-+.+..++..=+..|+++..+-..-....+.+.++.++
T Consensus 48 S~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~G 113 (317)
T TIGR02991 48 SFKLRGATNAVLSLSDTQRAAGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLG 113 (317)
T ss_pred CcHHHHHHHHHHhhhHhccCCeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcC
Confidence 346655544444322122345677778888888888888889999988877766666766666553
No 316
>KOG0389|consensus
Probab=49.75 E-value=52 Score=27.36 Aligned_cols=41 Identities=2% Similarity=0.044 Sum_probs=31.2
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhc-CceEEEecCCCChhH
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQE 120 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~ 120 (129)
..+++-+|.|++-.--.|+.+.=+=+ .+++..|||....++
T Consensus 446 g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGSq~ER~ 487 (941)
T KOG0389|consen 446 GNPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGSQDERR 487 (941)
T ss_pred CCCCCcEEEecchhHHHHHHHHHHhCCceEEEeccCcHHHHH
Confidence 46899999999877777776665444 689999999885443
No 317
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=49.52 E-value=34 Score=24.29 Aligned_cols=45 Identities=18% Similarity=0.390 Sum_probs=33.6
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCC
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDK 116 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~ 116 (129)
+..+|+.+ ....+..|+..|....+++-.++.-.++.....||.-
T Consensus 45 l~~lL~~L--as~~~~~v~iiSGR~~~~l~~~~~v~~i~l~aehGa~ 89 (266)
T COG1877 45 LLSLLQDL--ASDPRNVVAIISGRSLAELERLFGVPGIGLIAEHGAE 89 (266)
T ss_pred HHHHHHHH--HhcCCCeEEEEeCCCHHHHHHhcCCCCccEEEecceE
Confidence 44455544 2355777888889999999999987788888888864
No 318
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=49.46 E-value=81 Score=22.19 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=31.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQER 121 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 121 (129)
+.+.+-|-|.+...+..+.+.|...||++ .+.++.+--++
T Consensus 76 ~~~diAVL~R~~~~~~~i~~~L~~~gIp~-~~~~~~~~~~~ 115 (351)
T PF13361_consen 76 PPSDIAVLVRTNSQIKEIEDALKEAGIPY-RISGSKSLFES 115 (351)
T ss_dssp -GGGEEEEESSGGHHHHHHHHHHHTTS-E-EESSSSBGGGS
T ss_pred CcccEEEEEECchhHHHHHHHHhhhccee-Eeccccchhcc
Confidence 56789999999999999999999999997 56666544443
No 319
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=49.44 E-value=80 Score=21.37 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=30.5
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
..++-||+|. ..+.+.+.++..++.+..|||..+...
T Consensus 55 i~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHg~e~~~~ 91 (210)
T PRK01222 55 VKVVGVFVNA--SDEEIDEIVETVPLDLLQLHGDETPEF 91 (210)
T ss_pred CCEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 5788999864 667788888889999999999988754
No 320
>KOG1133|consensus
Probab=48.77 E-value=1.5e+02 Score=24.42 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCc
Q psy9627 67 ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW 107 (129)
Q Consensus 67 ~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~ 107 (129)
+..|-..+..+...-++-+++|++|-+-...+.+..+..|+
T Consensus 614 l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gi 654 (821)
T KOG1133|consen 614 IKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGI 654 (821)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcch
Confidence 34455555555555679999999999888888888876654
No 321
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=48.28 E-value=1.1e+02 Score=26.00 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=38.5
Q ss_pred HHHHHHHhhhcCCCCcEEEEecc----cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 69 KLFGLLNDISSKDENKTIIFAET----KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 69 ~L~~ll~~~~~~~~~~~iVF~nt----~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.|...+..+ ....+-|.+.+ ++.+++.....+..|+.|+++.++|+..+|..+.+
T Consensus 116 tlpaylnAL---~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~aY~ 174 (939)
T PRK12902 116 TLPSYLNAL---TGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNYA 174 (939)
T ss_pred HHHHHHHhh---cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHhcC
Confidence 344444443 34455555433 56677777777888999999999999999988764
No 322
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=47.98 E-value=92 Score=26.48 Aligned_cols=43 Identities=5% Similarity=0.050 Sum_probs=35.3
Q ss_pred CcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHH
Q psy9627 83 NKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l 125 (129)
.+++|-+.|+.-|...++.+.. .|+.+.++.|+++..++.+.+
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y 182 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY 182 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc
Confidence 3578889999998888888764 489999999999999887654
No 323
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=47.79 E-value=21 Score=30.40 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=26.8
Q ss_pred EEEecccccHHHHHHHHHhc------CceEEEecCCCChhHHHH
Q psy9627 86 IIFAETKRKVDKITKSIQNY------GWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 86 iVF~nt~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~R~~ 123 (129)
+|=+++.+.+-.++..|-.. .+.+.+||+......|..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~ 803 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSY 803 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHH
Confidence 45567788777777777543 356889999987666543
No 324
>PRK06756 flavodoxin; Provisional
Probab=47.58 E-value=30 Score=21.64 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=13.5
Q ss_pred cccccHHHHHHHHHhcCceEEEe
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGI 112 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~l 112 (129)
||.+.|+.+++.++..|..+..+
T Consensus 14 nTe~vA~~ia~~l~~~g~~v~~~ 36 (148)
T PRK06756 14 NTEEMADHIAGVIRETENEIEVI 36 (148)
T ss_pred hHHHHHHHHHHHHhhcCCeEEEe
Confidence 55666666666666656555433
No 325
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=47.28 E-value=58 Score=19.12 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=19.0
Q ss_pred CCcEEEEeccc-ccHHHHHHHHHhcCceEE
Q psy9627 82 ENKTIIFAETK-RKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 82 ~~~~iVF~nt~-~~~~~l~~~L~~~~~~~~ 110 (129)
..++++.+|+. ...+.+.+.|+..|+++.
T Consensus 30 g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 30 GKPVVFLTNNSSRSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp TSEEEEEES-SSS-HHHHHHHHHHTTTT--
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHhcCcCCC
Confidence 45777777665 444889999988888753
No 326
>PRK00254 ski2-like helicase; Provisional
Probab=46.68 E-value=79 Score=25.66 Aligned_cols=49 Identities=12% Similarity=0.278 Sum_probs=36.8
Q ss_pred HHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh---cCceEEEecCCCChhH
Q psy9627 71 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQE 120 (129)
Q Consensus 71 ~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~ 120 (129)
..+++.+. ...+++|+-+++++-++..++.++. .|+++..++|+.+...
T Consensus 58 l~il~~l~-~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~ 109 (720)
T PRK00254 58 IVMVNKLL-REGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTD 109 (720)
T ss_pred HHHHHHHH-hcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCch
Confidence 34454432 2457899999999999998877763 5899999999987643
No 327
>PRK09271 flavodoxin; Provisional
Probab=46.41 E-value=33 Score=21.93 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=15.1
Q ss_pred cccccHHHHHHHHHhcCceEE
Q psy9627 90 ETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~ 110 (129)
||.+.|+.+++.|+..|+.+.
T Consensus 13 nTe~~A~~ia~~l~~~g~~v~ 33 (160)
T PRK09271 13 NTREVAREIEERCEEAGHEVD 33 (160)
T ss_pred hHHHHHHHHHHHHHhCCCeeE
Confidence 667777777777777776654
No 328
>PRK08198 threonine dehydratase; Provisional
Probab=46.40 E-value=1.2e+02 Score=22.59 Aligned_cols=49 Identities=6% Similarity=0.068 Sum_probs=39.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
...+.||=+.+-+.+.-++..=+..|+++..+-..-....+...++.|+
T Consensus 68 ~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~G 116 (404)
T PRK08198 68 ERARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYG 116 (404)
T ss_pred hcCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCC
Confidence 3467888888999999999888889999998888777777766666553
No 329
>COG1204 Superfamily II helicase [General function prediction only]
Probab=46.30 E-value=66 Score=26.53 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=38.9
Q ss_pred HHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHH---hcCceEEEecCCCCh
Q psy9627 69 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQ---NYGWAAVGIHGDKSQ 118 (129)
Q Consensus 69 ~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~---~~~~~~~~lhg~~~~ 118 (129)
.++.+++.+. ...++++--|+++.-|++.++.++ ..|++|..++|+++-
T Consensus 64 A~lai~~~l~-~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~ 115 (766)
T COG1204 64 ALLAILSTLL-EGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDL 115 (766)
T ss_pred HHHHHHHHHH-hcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCccc
Confidence 3455566553 235788888899999999999998 679999999999884
No 330
>PTZ00062 glutaredoxin; Provisional
Probab=46.05 E-value=93 Score=21.12 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=33.7
Q ss_pred CCCcEEEEec------ccccHHHHHHHHHhcCceEEEecCCCChhHHHHH
Q psy9627 81 DENKTIIFAE------TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 81 ~~~~~iVF~n------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 124 (129)
+..+++||.. ++..|..+-+.|+..|++...+.=..+...|+..
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l 160 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREEL 160 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHH
Confidence 5679999986 5778889999999999987777655565555553
No 331
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=45.31 E-value=68 Score=19.33 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHhhhcCC--CCcEEEEeccccc
Q psy9627 64 HEKENKLFGLLNDISSKD--ENKTIIFAETKRK 94 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~--~~~~iVF~nt~~~ 94 (129)
...++-|..+++.....+ .+.+.||||.+..
T Consensus 14 Rkg~dgL~~lV~~~~~~dp~~g~~fvF~nr~r~ 46 (107)
T PF05717_consen 14 RKGIDGLAALVREELGLDPFSGDLFVFCNRRRD 46 (107)
T ss_pred ccChhHHHHHHHHhhcCCCCcceEEEEEeccCC
Confidence 346778888887654333 3688899987654
No 332
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=45.30 E-value=1.4e+02 Score=23.01 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=32.1
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERD 122 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~ 122 (129)
..++-||+|. ..+.+.+..+..++.+..|||.-+...-.
T Consensus 307 v~~VgVfv~~--~~~~i~~i~~~~~lD~vQLHG~e~~~~~~ 345 (454)
T PRK09427 307 LRYVGVFRNA--DIEDIVDIAKQLSLAAVQLHGDEDQAYID 345 (454)
T ss_pred CCEEEEEeCC--CHHHHHHHHHHcCCCEEEeCCCCCHHHHH
Confidence 5689999975 47788888888999999999998876643
No 333
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=45.13 E-value=59 Score=21.92 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=32.9
Q ss_pred CCcEEEEe-----cccccHHHHHHHHHhcCceEEEecCC-----------CChhHHHHHHh
Q psy9627 82 ENKTIIFA-----ETKRKVDKITKSIQNYGWAAVGIHGD-----------KSQQERDYVLK 126 (129)
Q Consensus 82 ~~~~iVF~-----nt~~~~~~l~~~L~~~~~~~~~lhg~-----------~~~~~R~~~l~ 126 (129)
.+.+|-|+ -...-|..+.+.|.+.|+.+..|-|+ .+.++|.+.+.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniR 82 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIR 82 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHH
Confidence 34566666 22345778999999999999999886 66777777664
No 334
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=44.66 E-value=76 Score=19.73 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=32.8
Q ss_pred ceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecc-----cccHHHHHHHHHh
Q psy9627 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAET-----KRKVDKITKSIQN 104 (129)
Q Consensus 54 i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt-----~~~~~~l~~~L~~ 104 (129)
-++.++.++.+.-+.-+..+|+.-...++.++.+|||. ......+++.-+.
T Consensus 40 dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KD 95 (121)
T PTZ00380 40 SKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKR 95 (121)
T ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcC
Confidence 45566668888888777778875444456668888864 3344455555543
No 335
>PRK10329 glutaredoxin-like protein; Provisional
Probab=44.44 E-value=58 Score=18.29 Aligned_cols=40 Identities=10% Similarity=0.232 Sum_probs=25.1
Q ss_pred cEEEEe-cccccHHHHHHHHHhcCceEEEecCCCChhHHHH
Q psy9627 84 KTIIFA-ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 84 ~~iVF~-nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 123 (129)
++.+|. ..+-.|..+-..|.+.|++...+.-+.+++.++.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~ 42 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAET 42 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHH
Confidence 355666 5566677777777777777666655555544443
No 336
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=44.08 E-value=76 Score=24.48 Aligned_cols=31 Identities=6% Similarity=0.189 Sum_probs=26.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEE
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVG 111 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~ 111 (129)
...++++||++-.++...+..|+..|+.-..
T Consensus 448 ~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~ 478 (482)
T PRK01269 448 QSKTYLLYCDRGVMSRLQALYLREQGFSNVK 478 (482)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCccEE
Confidence 3468999999999999999999999886443
No 337
>PRK00033 clpS ATP-dependent Clp protease adaptor protein ClpS; Reviewed
Probab=44.04 E-value=29 Score=20.71 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=26.8
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCceEE
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~ 110 (129)
+..++++|..-+.+.|+.....+...|+.|.
T Consensus 66 H~~G~avv~~~~~e~AE~~~~~l~~~~L~~~ 96 (100)
T PRK00033 66 HNEGKAVVGVCTREVAETKVEQVHQHGLLCT 96 (100)
T ss_pred hcCCcEEEEEEcHHHHHHHHHHHHcCCCeEE
Confidence 4678999999999999999999988887764
No 338
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=43.52 E-value=1.5e+02 Score=23.30 Aligned_cols=39 Identities=23% Similarity=0.159 Sum_probs=30.6
Q ss_pred CCcEEEEeccccc-----------HHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 82 ENKTIIFAETKRK-----------VDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 82 ~~~~iVF~nt~~~-----------~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
-.+++|+++|-+. +-.++++++..|..|..+-=+++...
T Consensus 218 l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A 267 (502)
T PRK09281 218 MEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQA 267 (502)
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCchHHH
Confidence 3688888888776 66788888888888888877777654
No 339
>PRK07048 serine/threonine dehydratase; Validated
Probab=42.26 E-value=1.3e+02 Score=21.67 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=36.9
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
.+.||=+.+-+.+..++..-+..|+++..+-..-..+.+...++.|+
T Consensus 72 ~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~G 118 (321)
T PRK07048 72 RAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYG 118 (321)
T ss_pred CCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCC
Confidence 35567677888888899998999999988888766677777777654
No 340
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=42.02 E-value=42 Score=18.41 Aligned_cols=24 Identities=0% Similarity=0.405 Sum_probs=21.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN 104 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~ 104 (129)
+..-++|.|.+.+.++.+.+.+++
T Consensus 46 gdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 46 GDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp ESSEEEEEESTTSHHHHHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHh
Confidence 567889999999999999998864
No 341
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=41.97 E-value=1.3e+02 Score=21.56 Aligned_cols=39 Identities=26% Similarity=0.163 Sum_probs=27.8
Q ss_pred CCcEEEEeccccc-----------HHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 82 ENKTIIFAETKRK-----------VDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 82 ~~~~iVF~nt~~~-----------~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
-.+++||++|-++ +-.++++++..|..|..+--+++...
T Consensus 125 ~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A 174 (274)
T cd01132 125 MEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQA 174 (274)
T ss_pred cceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEEEEEcChHHHH
Confidence 3577788877555 44678888888888888877776653
No 342
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=41.67 E-value=1.8e+02 Score=23.28 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=28.6
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 117 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~ 117 (129)
..++-||+|. ..+.+.+..+..++.+..|||.-+
T Consensus 57 v~~VgVfv~~--~~~~i~~~~~~~~ld~vQLHG~e~ 90 (610)
T PRK13803 57 GRPVGVFVNE--SAKAMLKFSKKNGIDFVQLHGAES 90 (610)
T ss_pred CCEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCC
Confidence 4678999975 566788888889999999999988
No 343
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=41.45 E-value=1.1e+02 Score=20.69 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=23.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDK 116 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~ 116 (129)
...-+||+.........+.+.+...++++..+....
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~~~~~ 91 (272)
T cd06301 56 GVDAIIVVPVDTAATAPIVKAANAAGIPLVYVNRRP 91 (272)
T ss_pred CCCEEEEecCchhhhHHHHHHHHHCCCeEEEecCCC
Confidence 444555554443445667777888899998887654
No 344
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=41.42 E-value=67 Score=18.13 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=15.0
Q ss_pred cHHHHHHHHHhcCceEEEecCCCChhHH
Q psy9627 94 KVDKITKSIQNYGWAAVGIHGDKSQQER 121 (129)
Q Consensus 94 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R 121 (129)
.|..+++.|+..|+.+....++.+...+
T Consensus 17 ~a~~l~~~L~~~gi~v~~d~~~~~~~k~ 44 (94)
T PF03129_consen 17 YAQELANKLRKAGIRVELDDSDKSLGKQ 44 (94)
T ss_dssp HHHHHHHHHHHTTSEEEEESSSSTHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchhHH
Confidence 3455555666666655555555544443
No 345
>KOG2792|consensus
Probab=41.10 E-value=41 Score=23.91 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEe-cccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 66 KENKLFGLLNDISSKDENKTIIFA-ETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 66 k~~~L~~ll~~~~~~~~~~~iVF~-nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
|+....+.++.....+..++.|-| +.++..+.+++++++.+=+...|.|.-+|
T Consensus 161 Km~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eq 214 (280)
T KOG2792|consen 161 KMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQ 214 (280)
T ss_pred HHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHH
Confidence 444444444432223445788888 45889999999998877667777776544
No 346
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=41.01 E-value=1.5e+02 Score=21.95 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=36.3
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
.+.+|=+.+-+.+.-++..-+..|++|..+-..-....+...++.++
T Consensus 48 ~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~G 94 (380)
T TIGR01127 48 QRGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYG 94 (380)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCC
Confidence 45788888888888888888888999888877766666666666553
No 347
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.63 E-value=1.1e+02 Score=21.08 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=23.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+.+..|||.+-..|..+...|++.|++
T Consensus 176 ~~~~~ai~~~~d~~A~gvl~al~~~gl~ 203 (269)
T cd06287 176 HPDLDALCVPVDAFAVGAVRAATELGRA 203 (269)
T ss_pred CCCCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 3467899999999999999999988874
No 348
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=40.50 E-value=78 Score=18.69 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=17.7
Q ss_pred cHHHHHHHHHhcCceEEEecCCCChhHHH
Q psy9627 94 KVDKITKSIQNYGWAAVGIHGDKSQQERD 122 (129)
Q Consensus 94 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~ 122 (129)
.++++.+..+..++.+..+...+++.|..
T Consensus 45 K~eei~~~~~~~~~d~vvfd~~Lsp~Q~r 73 (95)
T PF13167_consen 45 KVEEIKELIEELDADLVVFDNELSPSQQR 73 (95)
T ss_pred HHHHHHHHHhhcCCCEEEECCCCCHHHHH
Confidence 45556666666666666666666666543
No 349
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=40.28 E-value=1.1e+02 Score=20.21 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=35.4
Q ss_pred eEEEEEcCc-cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCc
Q psy9627 55 QQVVEVCAE-HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW 107 (129)
Q Consensus 55 ~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~ 107 (129)
.|......+ .+-...+...++... ....++++.++....++.+.+.|++.++
T Consensus 20 ~H~c~~Y~~~~e~~~~~~~Fi~~GL-~~ge~~l~v~~~~~~~~~l~~~L~~~~~ 72 (191)
T PF14417_consen 20 DHICAFYDDEEELLEVLVPFIREGL-ARGERCLYVAPDPRRVEELRDELRKAGP 72 (191)
T ss_pred ceEEEEECCHHHHHHHHHHHHHHHH-HCCCeEEEEECCCCCHHHHHHHHHhcCC
Confidence 566555555 445555666666554 3567888888778888899999975533
No 350
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=40.20 E-value=41 Score=20.89 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=15.6
Q ss_pred EEEEe----cccccHHHHHHHHHhcCceEE
Q psy9627 85 TIIFA----ETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 85 ~iVF~----nt~~~~~~l~~~L~~~~~~~~ 110 (129)
.|||. ||++-|+.+++.|...|+.+.
T Consensus 4 ~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~ 33 (140)
T TIGR01754 4 LLAYLSLSGNTEEVAFMIQDYLQKDGHEVD 33 (140)
T ss_pred EEEEECCCChHHHHHHHHHHHHhhCCeeEE
Confidence 34555 556666666666666666554
No 351
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=40.19 E-value=1e+02 Score=20.00 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=37.0
Q ss_pred HHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc--CceEEE-ecCCCChhHHHHHH
Q psy9627 69 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY--GWAAVG-IHGDKSQQERDYVL 125 (129)
Q Consensus 69 ~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~--~~~~~~-lhg~~~~~~R~~~l 125 (129)
.+..+++... .+..++.++-.+...++.+.+.|++. |+.+.. .||-+...+..+++
T Consensus 34 l~~~ll~~~~-~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~ 92 (171)
T cd06533 34 LMPALLELAA-QKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEII 92 (171)
T ss_pred HHHHHHHHHH-HcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHH
Confidence 3444444331 23567777778888888888888775 777666 77878776655433
No 352
>KOG1802|consensus
Probab=39.95 E-value=71 Score=26.24 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=31.9
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
..++++|-.+|.-.++.+++.+.+.|+++..+-+.
T Consensus 453 ~~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl~ak 487 (935)
T KOG1802|consen 453 HAGPVLVCAPSNIAVDQLAEKIHKTGLKVVRLCAK 487 (935)
T ss_pred cCCceEEEcccchhHHHHHHHHHhcCceEeeeehh
Confidence 67899999999999999999999999999877654
No 353
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.93 E-value=1.4e+02 Score=21.54 Aligned_cols=48 Identities=6% Similarity=-0.035 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhcCCCCcEEEEec-ccccHHHHHHHHHhcCceEEEecCC
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAE-TKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~n-t~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
.....+|+.+.-.-.++.+++++ +.....-++..|.+.|..+..+|..
T Consensus 143 ~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~r 191 (296)
T PRK14188 143 LGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSR 191 (296)
T ss_pred HHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCC
Confidence 34455666542234578888887 8888999999999999999999854
No 354
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=39.87 E-value=82 Score=22.46 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHH
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQER 121 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 121 (129)
..|-..|...|... ...=.+.=||--..-+.++..|...|++|...+|.-.++-.
T Consensus 53 e~kTA~L~~tL~a~---GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~get~eey~ 107 (268)
T PF05221_consen 53 EAKTAVLAETLKAL---GAEVRWTGSNPLSTQDDVAAALAEEGIPVFAWKGETDEEYW 107 (268)
T ss_dssp SHHHHHHHHHHHHT---TEEEEEEESSTTT--HHHHHHHHHTTEEEEE-TT--HHHHH
T ss_pred hHHHHHHHHHHHHc---CCeEEEecCCCcccchHHHHHhccCCceEEEeCCCCHHHHH
Confidence 56777888888863 22223345576788899999999999999999998766543
No 355
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=39.69 E-value=56 Score=16.77 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=10.5
Q ss_pred cccccHHHHHHHHHhcCceEEEe
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGI 112 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~l 112 (129)
+.+..|..+...|.+.+++...+
T Consensus 8 ~~Cp~C~~~~~~L~~~~i~~~~~ 30 (72)
T cd02066 8 STCPYCKRAKRLLESLGIEFEEI 30 (72)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEE
Confidence 33444444444554444444333
No 356
>KOG1503|consensus
Probab=39.44 E-value=91 Score=22.08 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 66 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 66 k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
-..+|++-++.-.+ +...++|...+-..+..-..+-....+..+.+||+....
T Consensus 151 aspfllqyiqe~ip-dyrnavivaksp~~akka~syaerlrlglavihge~k~~ 203 (354)
T KOG1503|consen 151 ASPFLLQYIQEEIP-DYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDT 203 (354)
T ss_pred cCHHHHHHHHHhCc-cccceEEEecCcchhhHHHhHHHHHhhceeEeecccccc
Confidence 44666666664322 345677777777666666666666677888999986543
No 357
>KOG1015|consensus
Probab=39.02 E-value=97 Score=26.79 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=51.2
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh----------------------cCceEEEecCCCChhHH
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN----------------------YGWAAVGIHGDKSQQER 121 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~----------------------~~~~~~~lhg~~~~~~R 121 (129)
..|+-.|+++|+.+- .-..++|||-.+....+.+-.+|.. .|..-+.|-|....++|
T Consensus 1125 SgKmiLLleIL~mce-eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R 1203 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCE-EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSR 1203 (1567)
T ss_pred CcceehHHHHHHHHH-HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHH
Confidence 457888889998662 4567999999999999998888852 25567788899999999
Q ss_pred HHHHhcC
Q psy9627 122 DYVLKVG 128 (129)
Q Consensus 122 ~~~l~~~ 128 (129)
.+..+.|
T Consensus 1204 ~k~~~~F 1210 (1567)
T KOG1015|consen 1204 KKWAEEF 1210 (1567)
T ss_pred HHHHHHh
Confidence 9887766
No 358
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=38.75 E-value=77 Score=22.68 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=14.2
Q ss_pred CcEEEEecccccHHH--HHHHHHhcCce
Q psy9627 83 NKTIIFAETKRKVDK--ITKSIQNYGWA 108 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~--l~~~L~~~~~~ 108 (129)
+=.|+|+.-|...++ -.+.|++.|++
T Consensus 161 G~kIf~VSgR~e~~r~aT~~NL~kaGy~ 188 (275)
T TIGR01680 161 GFKIIFLSGRLKDKQAVTEANLKKAGYH 188 (275)
T ss_pred CCEEEEEeCCchhHHHHHHHHHHHcCCC
Confidence 334666655554333 45566666764
No 359
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=38.72 E-value=77 Score=19.11 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=22.8
Q ss_pred CcEEEEe--cccccHHHHHHHHHhcCceEEEec
Q psy9627 83 NKTIIFA--ETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 83 ~~~iVF~--nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
..+.|++ ++...|...++.|++.|+++..++
T Consensus 10 ~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~ 42 (124)
T PF02780_consen 10 ADITIIAYGSMVEEALEAAEELEEEGIKAGVID 42 (124)
T ss_dssp SSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeehHHHHHHHHHHHHHHHcCCceeEEe
Confidence 3444444 777888888999988888877665
No 360
>KOG2501|consensus
Probab=38.68 E-value=1.1e+02 Score=19.94 Aligned_cols=57 Identities=11% Similarity=0.300 Sum_probs=38.5
Q ss_pred EEEEcCc-cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc--CceEEEec
Q psy9627 57 VVEVCAE-HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY--GWAAVGIH 113 (129)
Q Consensus 57 ~~~~~~~-~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~--~~~~~~lh 113 (129)
+...|+. ++=...|.+++.++..+...=-|||+.+-+..+.+.+++... .|.+..++
T Consensus 41 sA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~ 100 (157)
T KOG2501|consen 41 SAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFG 100 (157)
T ss_pred EEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCC
Confidence 3445655 333355667777665555677899999999999999999864 34444443
No 361
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.57 E-value=69 Score=21.65 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=23.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+.+..|||.+...|..+...+++.|+.
T Consensus 170 ~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 197 (263)
T cd06280 170 PERPEALVASNGLLLLGALRAVRAAGLR 197 (263)
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 3457889999999999999999988763
No 362
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=37.99 E-value=1.5e+02 Score=21.11 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=38.4
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
+..+|=+.+-+.+..++..-+..|+++..+-..-....+.+.++.++
T Consensus 59 g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~G 105 (290)
T TIGR01138 59 GDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYG 105 (290)
T ss_pred CCEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcC
Confidence 46678788899999999999999999999988876667777776653
No 363
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=37.88 E-value=2e+02 Score=24.44 Aligned_cols=44 Identities=7% Similarity=0.053 Sum_probs=34.7
Q ss_pred CcEEEEecc---cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 83 NKTIIFAET---KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 83 ~~~iVF~nt---~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
+=-+|-+|. ++.++|.....+..|+.|+++-++|+..+|..+..
T Consensus 121 gVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~aY~ 167 (925)
T PRK12903 121 GVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAYA 167 (925)
T ss_pred ceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHhcc
Confidence 334444443 66788888888889999999999999999988765
No 364
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=37.67 E-value=2.3e+02 Score=23.99 Aligned_cols=46 Identities=15% Similarity=0.080 Sum_probs=34.6
Q ss_pred CCCcEEEEeccc----ccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAETK----RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt~----~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
....+-|.+.+. ..+++.....+..|+.|+++.++++..+|.++.+
T Consensus 116 ~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~aY~ 165 (870)
T CHL00122 116 TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYL 165 (870)
T ss_pred cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHhcC
Confidence 455666766554 4555566666778999999999999999988765
No 365
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=37.61 E-value=69 Score=17.19 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=9.6
Q ss_pred ccccHHHHHHHHHhcCceEEEec
Q psy9627 91 TKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 91 t~~~~~~l~~~L~~~~~~~~~lh 113 (129)
++-.|...-..|.+.|++...++
T Consensus 8 ~Cp~C~~ak~~L~~~~i~~~~~d 30 (72)
T TIGR02194 8 NCVQCKMTKKALEEHGIAFEEIN 30 (72)
T ss_pred CCHHHHHHHHHHHHCCCceEEEE
Confidence 33344444444444444443333
No 366
>COG1647 Esterase/lipase [General function prediction only]
Probab=37.39 E-value=31 Score=24.03 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=24.6
Q ss_pred EecccccHHHHHHHHHhcCceEEE----ecCCCC
Q psy9627 88 FAETKRKVDKITKSIQNYGWAAVG----IHGDKS 117 (129)
Q Consensus 88 F~nt~~~~~~l~~~L~~~~~~~~~----lhg~~~ 117 (129)
|+-|.+.++.++++|++.|+.|.. =||-.+
T Consensus 24 FTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~ 57 (243)
T COG1647 24 FTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLP 57 (243)
T ss_pred cCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCH
Confidence 789999999999999999988753 455544
No 367
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=37.32 E-value=57 Score=21.14 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHhcCceEEEecCC-----------CChhHHHHHHhc
Q psy9627 93 RKVDKITKSIQNYGWAAVGIHGD-----------KSQQERDYVLKV 127 (129)
Q Consensus 93 ~~~~~l~~~L~~~~~~~~~lhg~-----------~~~~~R~~~l~~ 127 (129)
.-|..+...|...|+++..|.|+ .+.++|.+.+..
T Consensus 17 TlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr 62 (156)
T PF01583_consen 17 TLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRR 62 (156)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHH
Confidence 44677888888899999988764 466777776653
No 368
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=37.28 E-value=1.6e+02 Score=22.96 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=34.0
Q ss_pred HHHHHHhhhcC-CCCcEEEEeccccc-----------HHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 70 LFGLLNDISSK-DENKTIIFAETKRK-----------VDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 70 L~~ll~~~~~~-~~~~~iVF~nt~~~-----------~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
..++++.+... .-.+++|+++|-+. +-.++++++..|-.|..+.=+++...
T Consensus 184 v~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~A 246 (485)
T CHL00059 184 VAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDLSKQA 246 (485)
T ss_pred HHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHHcCCCEEEEEcChhHHH
Confidence 34444443222 23678888877665 44588888888888888888877654
No 369
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=36.44 E-value=1.9e+02 Score=22.68 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=28.4
Q ss_pred CCcEEEEeccccc-----------HHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 82 ENKTIIFAETKRK-----------VDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 82 ~~~~iVF~nt~~~-----------~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
-.+++|+++|-+. +-.++++++..|-.|..+-=+++...
T Consensus 218 l~~tvvV~atsd~p~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A 267 (497)
T TIGR03324 218 MDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHA 267 (497)
T ss_pred cceeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcChhHHH
Confidence 3577787777655 44588888888888888877777654
No 370
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=36.34 E-value=77 Score=21.19 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=23.5
Q ss_pred CcEEEEeccc-----ccHHHHHHHHHhcCceEEEecCC
Q psy9627 83 NKTIIFAETK-----RKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 83 ~~~iVF~nt~-----~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
++++||+.+- ......++.|++.|+.+..+.=|
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G 145 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFG 145 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 4778888665 34456788888888887766543
No 371
>PLN02970 serine racemase
Probab=36.31 E-value=1.7e+02 Score=21.25 Aligned_cols=64 Identities=8% Similarity=0.002 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 66 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 66 k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
|..-....+.........+.||=+.+-+.+..++..-+..|++|..+=..-...+|...++.++
T Consensus 58 KdRga~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~G 121 (328)
T PLN02970 58 KFRGACNAIFSLSDDQAEKGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYG 121 (328)
T ss_pred HHHHHHHHHHHhhHhhcCCeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcC
Confidence 5544434443221122346677778888888888888888999888877766666666666653
No 372
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=36.27 E-value=17 Score=20.03 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=23.6
Q ss_pred EEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 86 IIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 86 iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
|.|......-..+++..++.++.+-.+||+++.
T Consensus 7 l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~ 39 (76)
T PF09383_consen 7 LTFTGNSAQEPIISQLIREFGVDVNILHGNIEE 39 (76)
T ss_dssp EEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEE
T ss_pred EEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEE
Confidence 456655666667778888888999999988664
No 373
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=36.20 E-value=54 Score=19.09 Aligned_cols=55 Identities=9% Similarity=0.155 Sum_probs=35.3
Q ss_pred CCceEEEEEcCccchHHHHHHHHHhhhc-CCCCcEEEEecc------cccHHHHHHHHHhcC
Q psy9627 52 HNIQQVVEVCAEHEKENKLFGLLNDISS-KDENKTIIFAET------KRKVDKITKSIQNYG 106 (129)
Q Consensus 52 ~~i~~~~~~~~~~~k~~~L~~ll~~~~~-~~~~~~iVF~nt------~~~~~~l~~~L~~~~ 106 (129)
+-+++..+.+...+++..+...|++... .+..++.+|+|. .+....|++.....|
T Consensus 13 Pilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~~~~ 74 (87)
T PF04110_consen 13 PILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFGTNG 74 (87)
T ss_dssp ---S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH-BTT
T ss_pred ccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhCCCC
Confidence 4667788888999999998888876543 235788998866 567778888877555
No 374
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=36.06 E-value=95 Score=27.04 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=33.6
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 124 (129)
.+-+-|.|.+...+..+.+.|.+.||++..+.|.-+--++.++
T Consensus 551 ~~DIAVLvRs~~~a~~i~~aL~~~gIP~v~~~~~~~~f~~~Ea 593 (1181)
T PRK10876 551 ASDITVLVRSRQEAALIRDALTLLAIPSVYLSNRDSVFETLEA 593 (1181)
T ss_pred cccEEEEEecCchHHHHHHHHHhCCCCEEEecCCcCccchHHH
Confidence 3567899999999999999999999999877765444444433
No 375
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=36.03 E-value=2.1e+02 Score=24.35 Aligned_cols=44 Identities=9% Similarity=-0.022 Sum_probs=33.5
Q ss_pred CCcEEEEecccccHHHHHHHH----HhcCceEEEecCCCChhHHHHHH
Q psy9627 82 ENKTIIFAETKRKVDKITKSI----QNYGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L----~~~~~~~~~lhg~~~~~~R~~~l 125 (129)
...+.|-+.+..-|..-++.+ +..|+.|.++.|++++.+|.++.
T Consensus 123 g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~Y 170 (908)
T PRK13107 123 GKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAY 170 (908)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhcC
Confidence 445888888876666555555 55799999999999998887754
No 376
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=35.82 E-value=1.5e+02 Score=20.45 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=36.6
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecc-----cccHHHHHHHHHhcCceEEEecCC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAET-----KRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt-----~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
-.|......+...+ ...+++||||. .+...++.++.....+++..+-..
T Consensus 147 ~eki~~~lki~~~l---~~kki~ifvNl~~YLt~eei~el~~~i~~~~~~vlliE~~ 200 (216)
T TIGR01866 147 LEKCLEILQIFKEL---TKKKLFIFINSGAFLTKDELAELQKFISYTKLTVLFLEPR 200 (216)
T ss_pred HHHHHHHHHHHHHH---hcCcEEEEEcHHHhCCHHHHHHHHHHHHHhcccEEEEecc
Confidence 44666666666654 57899999984 667778888888888888877665
No 377
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=35.74 E-value=33 Score=24.59 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=25.3
Q ss_pred cccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
-|...|+++++.|+..|+.+..-|-++..
T Consensus 255 RSV~iae~La~~L~~~~~~v~v~HRdl~k 283 (284)
T PF03668_consen 255 RSVAIAERLAERLREKGYTVVVRHRDLEK 283 (284)
T ss_pred cHHHHHHHHHHHHHhcCCcceEEcCCCCC
Confidence 45778999999999999999999998864
No 378
>PF09711 Cas_Csn2: CRISPR-associated protein (Cas_Csn2); InterPro: IPR010146 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the Csn2 family of Cas proteins, which are found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.; PDB: 3TOC_A 3QHQ_A 3S5U_C.
Probab=35.72 E-value=1.4e+02 Score=20.11 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=28.3
Q ss_pred CCCCcEEEEecc-----cccHHHHHHHHHhcCceEEEecCCC
Q psy9627 80 KDENKTIIFAET-----KRKVDKITKSIQNYGWAAVGIHGDK 116 (129)
Q Consensus 80 ~~~~~~iVF~nt-----~~~~~~l~~~L~~~~~~~~~lhg~~ 116 (129)
....+++||+|- .+..+.+.++....++++..+-+..
T Consensus 128 L~~kKllvfVNl~~YLT~eEl~el~e~i~~~~i~VL~IE~r~ 169 (188)
T PF09711_consen 128 LLKKKLLVFVNLRSYLTEEELQELYEYIKYNKIKVLFIENRK 169 (188)
T ss_dssp -TT--EEEEESGGGGS-HHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred HcCCCEEEEEchHHhcCHHHHHHHHHHHHHhCCeEEEEeccc
Confidence 467899999985 6678889999999999999888753
No 379
>PRK06815 hypothetical protein; Provisional
Probab=35.67 E-value=1.7e+02 Score=21.08 Aligned_cols=48 Identities=6% Similarity=0.030 Sum_probs=35.1
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
..+.+|-..+-+.+..++..-+..|++|..+-..-....|...++.++
T Consensus 67 ~~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~G 114 (317)
T PRK06815 67 RQQGVITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALG 114 (317)
T ss_pred cCceEEEECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCC
Confidence 345577778888888888888888999887777666666666666553
No 380
>KOG4238|consensus
Probab=35.61 E-value=41 Score=25.35 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=25.2
Q ss_pred HHHHHHHhcCceEEEecCC-----------CChhHHHHHHh
Q psy9627 97 KITKSIQNYGWAAVGIHGD-----------KSQQERDYVLK 126 (129)
Q Consensus 97 ~l~~~L~~~~~~~~~lhg~-----------~~~~~R~~~l~ 126 (129)
.+-++|...||+|+.+-|+ +++++|++.++
T Consensus 69 ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenir 109 (627)
T KOG4238|consen 69 ALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIR 109 (627)
T ss_pred HHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHH
Confidence 4778899999999999886 78888888765
No 381
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=35.56 E-value=48 Score=21.72 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=11.9
Q ss_pred cccccHHHHHHHHHhcCceE
Q psy9627 90 ETKRKVDKITKSIQNYGWAA 109 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~ 109 (129)
||++-|+++++.|.. |+.+
T Consensus 13 ~T~~iA~~Ia~~l~~-g~~v 31 (177)
T PRK11104 13 QTRKIASYIASELKE-GIQC 31 (177)
T ss_pred hHHHHHHHHHHHhCC-CCeE
Confidence 566667777777765 4443
No 382
>PRK08576 hypothetical protein; Provisional
Probab=35.38 E-value=93 Score=23.87 Aligned_cols=40 Identities=10% Similarity=0.266 Sum_probs=31.5
Q ss_pred EEecccccHHHHHHHHHhc----CceEEEecCCCChhHHHHHHh
Q psy9627 87 IFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 87 VF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~ 126 (129)
|.+.+++.|..+...+... +++|..|||+.+..+=+.+++
T Consensus 4 ~~~r~~kda~a~~~~~~~~~~~~~~~v~~l~g~r~~~~~~~~~~ 47 (438)
T PRK08576 4 IIVRSRKDAKAVKAINERFYGGWNLEVSSLGGARKFEEVEDNLE 47 (438)
T ss_pred EEEeecccHHHHHHHHhhhcCCCceEEEecCCCCCHHHHHHHHH
Confidence 5677888999888888653 568999999999877666654
No 383
>PRK08105 flavodoxin; Provisional
Probab=35.30 E-value=60 Score=20.58 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=14.1
Q ss_pred cccccHHHHHHHHHhcCceEEEec
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
||..-|+.+++.|...|+.+..+.
T Consensus 14 nte~~A~~l~~~l~~~g~~~~~~~ 37 (149)
T PRK08105 14 NALLVAEEAEAILTAQGHEVTLFE 37 (149)
T ss_pred HHHHHHHHHHHHHHhCCCceEEec
Confidence 445555556666666677665443
No 384
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.25 E-value=1.6e+02 Score=21.66 Aligned_cols=88 Identities=10% Similarity=0.160 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEE-------EecccccH
Q psy9627 23 WPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTII-------FAETKRKV 95 (129)
Q Consensus 23 ~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iV-------F~nt~~~~ 95 (129)
+.+.+.+++...+.....+.+...+ +.....+..+.....+..+...++.+......++.| +-.+.+.+
T Consensus 194 ~~p~i~~l~~~~~~~~laisLka~d----~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gvNDs~eda 269 (342)
T PRK14454 194 IVPKIYELADENLQITLAISLHAPN----DELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYALVKGVNDSKEDA 269 (342)
T ss_pred ChhHHHHHHhhcccceEEEecCCCC----HHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCCCCCHHHH
Confidence 4455666655433322344444332 222333333333333444444443322222334432 11377788
Q ss_pred HHHHHHHHhc--CceEEEecC
Q psy9627 96 DKITKSIQNY--GWAAVGIHG 114 (129)
Q Consensus 96 ~~l~~~L~~~--~~~~~~lhg 114 (129)
+.+++.++.. .+....+|.
T Consensus 270 ~~La~llk~l~~~VnLiPyn~ 290 (342)
T PRK14454 270 KELGKLLKGMLCHVNLIPVNE 290 (342)
T ss_pred HHHHHHHhcCCceEEEEecCC
Confidence 8888888653 334444453
No 385
>PRK06703 flavodoxin; Provisional
Probab=34.79 E-value=61 Score=20.32 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=10.9
Q ss_pred cccccHHHHHHHHHhcCceEE
Q psy9627 90 ETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~ 110 (129)
||..-|+.+++.|...|+.+.
T Consensus 14 nT~~iA~~ia~~l~~~g~~v~ 34 (151)
T PRK06703 14 NTEDIADLIKVSLDAFDHEVV 34 (151)
T ss_pred hHHHHHHHHHHHHHhcCCceE
Confidence 445555555555555554443
No 386
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=34.74 E-value=64 Score=19.26 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=30.1
Q ss_pred CChhhhhccCC-CCceEEEEEecCcHHHHHHHHHhcc---CccEEEeC
Q psy9627 1 MNWASRAMTYK-PDRQVLMWSATWPREVQKLAEDFLD---SYIQINIG 44 (129)
Q Consensus 1 ~g~~~il~~l~-~~~Q~ll~SAT~~~~v~~~~~~~~~---~~~~i~~~ 44 (129)
+||.+-++.+. .+...+..++..|+++++.+.-+-. -|+...-+
T Consensus 22 lG~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~~y~G 69 (100)
T COG1911 22 LGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVYVYEG 69 (100)
T ss_pred EehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 47777777663 4557778888999999988876632 35554443
No 387
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=34.73 E-value=2e+02 Score=21.68 Aligned_cols=46 Identities=9% Similarity=0.090 Sum_probs=35.3
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+.+|=+.+-+.+.-++..-+..|++|..+-..-....+...++.+
T Consensus 64 ~~gvv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 109 (409)
T TIGR02079 64 AKGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIF 109 (409)
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHc
Confidence 4667878888888888888888899988887776666666666554
No 388
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=34.44 E-value=1.5e+02 Score=23.82 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=39.1
Q ss_pred ccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCC
Q psy9627 63 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 63 ~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
+.-|-..+..++..... ...+++|...|...++.+.+.|...++++..+.+.
T Consensus 183 GTGKT~t~~~ii~~~~~-~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~ 234 (637)
T TIGR00376 183 GTGKTRTLVELIRQLVK-RGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHP 234 (637)
T ss_pred CCCHHHHHHHHHHHHHH-cCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCc
Confidence 35577777777766543 34589999999999999999998877776665543
No 389
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=34.31 E-value=1.6e+02 Score=22.33 Aligned_cols=53 Identities=9% Similarity=0.118 Sum_probs=38.9
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
..|-..|...|... ...-.+.-||--..=+.++..|.+.|+++...+|.-.++
T Consensus 42 ~~~Ta~l~~~L~~~---GA~v~~~~~np~stqd~vaaaL~~~gi~v~a~~~~~~~e 94 (406)
T TIGR00936 42 TVETAVLIETLVAG---GAEVAWTSCNPLSTQDDVAAALAKAGIPVFAWRGETNEE 94 (406)
T ss_pred hHHHHHHHHHHHHc---CCEEEEEccCCccccHHHHHHHHhCCceEEEecCCCHHH
Confidence 44666676677652 334455567877788889999999999999999987654
No 390
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=34.03 E-value=1.4e+02 Score=19.65 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=23.9
Q ss_pred CcEEEEecc--------cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 83 NKTIIFAET--------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 83 ~~~iVF~nt--------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.+++|+-|+ ..+|+.+.+.| |+++. .|+..-+.-+.++++
T Consensus 78 ~~v~IvSNsaGs~~d~~~~~a~~~~~~l---gIpvl-~h~~kKP~~~~~i~~ 125 (168)
T PF09419_consen 78 DRVLIVSNSAGSSDDPDGERAEALEKAL---GIPVL-RHRAKKPGCFREILK 125 (168)
T ss_pred CeEEEEECCCCcccCccHHHHHHHHHhh---CCcEE-EeCCCCCccHHHHHH
Confidence 489999998 34555555554 67764 455444444444444
No 391
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=34.02 E-value=52 Score=17.19 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=18.4
Q ss_pred cccHHHHHHHHHhcCceEEEecCC
Q psy9627 92 KRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 92 ~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
...+..+...|+..||++...+|-
T Consensus 10 ~~~a~l~~~llr~~GIpar~v~g~ 33 (68)
T smart00460 10 GEFAALFVALLRSLGIPARVVSGY 33 (68)
T ss_pred HHHHHHHHHHHHHCCCCeEEEeee
Confidence 445666777888899999988874
No 392
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=33.93 E-value=1.7e+02 Score=20.63 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHhhhcCC---CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKD---ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~---~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|...+..++....... ++.++|=+.+-+.+..++..-+..|++|..+-..-....+...++.+
T Consensus 31 S~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~ 98 (291)
T cd01561 31 SVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRAL 98 (291)
T ss_pred cchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHc
Confidence 446655555554332222 23566667788888888888888999988888765555555665554
No 393
>TIGR02679 conserved hypothetical protein TIGR02679. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=33.91 E-value=1.8e+02 Score=21.94 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=33.8
Q ss_pred EEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecc--cccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 57 VVEVCAEHEKENKLFGLLNDISSKDENKTIIFAET--KRKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 57 ~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt--~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
.++.|++..-+.. +++.. .+....+|+++= ...+..+-+.|...|..+ .|||+++..
T Consensus 252 ~V~vvENp~vf~~---~~~~~--~~~~~~lIct~G~p~~a~~~LL~~L~~~g~~l-~YhGDfD~~ 310 (385)
T TIGR02679 252 RVYVVENPNVLAI---ALDRL--GPRCAPLVCTDGQPNAAQIKLLDLLAAAGARL-YYHGDFDWP 310 (385)
T ss_pred eEEEEecHHHHHH---HHHhc--CCCCceEEECCCcchHHHHHHHHHHHhcCCeE-EEecCCChh
Confidence 4667777544443 44432 112234555532 344556677777788777 999999986
No 394
>KOG0070|consensus
Probab=33.84 E-value=1.5e+02 Score=19.89 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=16.9
Q ss_pred CCcEEEEeccccc-----HHHHHHHHHhc
Q psy9627 82 ENKTIIFAETKRK-----VDKITKSIQNY 105 (129)
Q Consensus 82 ~~~~iVF~nt~~~-----~~~l~~~L~~~ 105 (129)
.-+++||.|.++. +.++.+.|.-.
T Consensus 118 ~~~llv~aNKqD~~~als~~ei~~~L~l~ 146 (181)
T KOG0070|consen 118 NAPLLVFANKQDLPGALSAAEITNKLGLH 146 (181)
T ss_pred CceEEEEechhhccccCCHHHHHhHhhhh
Confidence 5689999988763 45677777544
No 395
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=33.81 E-value=61 Score=18.79 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=24.5
Q ss_pred ccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 91 TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 91 t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
|.+.|+.+...|+...+.+ .+..+|...+.
T Consensus 32 t~~QA~~I~~~lr~k~inI------fn~~~r~~llk 61 (85)
T PF11116_consen 32 TKKQAEQIANILRGKNINI------FNEQERKKLLK 61 (85)
T ss_pred CHHHHHHHHHHHhcCCCCC------CCHHHHHHHHH
Confidence 7888999999999888877 57777877664
No 396
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=33.76 E-value=1.1e+02 Score=18.98 Aligned_cols=24 Identities=4% Similarity=-0.079 Sum_probs=12.0
Q ss_pred cccccHHHHHHHHHhcCceEEEec
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
++|..|...-.+|...|++...++
T Consensus 8 ~~C~~C~ka~~~L~~~gi~~~~id 31 (131)
T PRK01655 8 PSCTSCRKAKAWLEEHDIPFTERN 31 (131)
T ss_pred CCChHHHHHHHHHHHcCCCcEEee
Confidence 344555555555555555544433
No 397
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=33.75 E-value=64 Score=20.34 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=19.6
Q ss_pred cccccHHHHHHHHHhcCceEEEecCC
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
||..-|+.+++.|...++.+...+..
T Consensus 14 nTe~vA~~i~~~l~~~~~~~~~~~~~ 39 (151)
T COG0716 14 NTEKVAEIIAEELGADGFEVDIDIRP 39 (151)
T ss_pred cHHHHHHHHHHHhccCCceEEEeecC
Confidence 77888888888888888777555544
No 398
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=33.60 E-value=2.2e+02 Score=22.07 Aligned_cols=39 Identities=8% Similarity=-0.019 Sum_probs=29.4
Q ss_pred CCcEEEEeccccc-----------HHHHHHHHHh-cCceEEEecCCCChhH
Q psy9627 82 ENKTIIFAETKRK-----------VDKITKSIQN-YGWAAVGIHGDKSQQE 120 (129)
Q Consensus 82 ~~~~iVF~nt~~~-----------~~~l~~~L~~-~~~~~~~lhg~~~~~~ 120 (129)
-.+++|+++|-++ +-.++++++. .|..|..+-=+++.-.
T Consensus 201 l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 251 (463)
T PRK09280 201 LDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFT 251 (463)
T ss_pred cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecchHHHH
Confidence 4688888888666 5568888888 8888888877766543
No 399
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=33.56 E-value=1.7e+02 Score=22.27 Aligned_cols=54 Identities=11% Similarity=0.081 Sum_probs=40.4
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
..|-..|...|... ...=.+.-||.-..-+.++..|.+.|++|...||.-.++-
T Consensus 46 ~~~ta~l~~~L~~~---GA~v~~~~~np~stqd~vaa~l~~~gi~v~a~~~~~~~~y 99 (413)
T cd00401 46 TVQTAVLIETLVAL---GAEVRWSSCNIFSTQDHAAAAIAAAGIPVFAWKGETLEEY 99 (413)
T ss_pred hHHHHHHHHHHHHc---CCEEEEEcCCCccchHHHHHHHHhcCceEEEEcCCCHHHH
Confidence 45666677777652 3344556677788889999999999999999999866543
No 400
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=33.30 E-value=2.1e+02 Score=23.85 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=32.8
Q ss_pred CCCcEEEEecccccHHHHHHHH----HhcCceEEEecCC-----CChhHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSI----QNYGWAAVGIHGD-----KSQQERDYV 124 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L----~~~~~~~~~lhg~-----~~~~~R~~~ 124 (129)
....++|.+++..-|...++.+ +..|+.|.++.++ +...+|..+
T Consensus 110 ~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~ 162 (762)
T TIGR03714 110 TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKI 162 (762)
T ss_pred cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHh
Confidence 3457999999998888777777 5579999887765 666666543
No 401
>PRK05569 flavodoxin; Provisional
Probab=33.16 E-value=71 Score=19.63 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=10.6
Q ss_pred cccccHHHHHHHHHhcCceE
Q psy9627 90 ETKRKVDKITKSIQNYGWAA 109 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~ 109 (129)
||..-|+.+++.+...|..+
T Consensus 14 nT~~iA~~i~~~~~~~g~~v 33 (141)
T PRK05569 14 NVEVLANTIADGAKEAGAEV 33 (141)
T ss_pred HHHHHHHHHHHHHHhCCCeE
Confidence 55555555555555445443
No 402
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=32.99 E-value=1.3e+02 Score=20.27 Aligned_cols=28 Identities=11% Similarity=0.188 Sum_probs=22.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
++.+..|||++...+..+...|++.|+.
T Consensus 175 ~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 202 (268)
T cd06270 175 GAPFTAVFCANDEMAAGAISALREHGIS 202 (268)
T ss_pred CCCCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 4557788998888888999999887753
No 403
>PRK06382 threonine dehydratase; Provisional
Probab=32.64 E-value=2.2e+02 Score=21.43 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=41.3
Q ss_pred chHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 65 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 65 ~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
.|..-....+.........+.+|=+.+-+.+..++..-+..|++|..+-..-....+.+.++.|+
T Consensus 55 fK~Rga~~~i~~~~~~~~~~gvv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~G 119 (406)
T PRK06382 55 FKSRGAVFKFSKLSEDELRNGVITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYG 119 (406)
T ss_pred CHHHHHHHHHHhcchhccCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcC
Confidence 36554444443322122235577777888888888777788999888887766666666666553
No 404
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=32.62 E-value=1.7e+02 Score=21.54 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=48.8
Q ss_pred hhccCCCCceEEEEEec-CcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhh----cC
Q psy9627 6 RAMTYKPDRQVLMWSAT-WPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDIS----SK 80 (129)
Q Consensus 6 il~~l~~~~Q~ll~SAT-~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~----~~ 80 (129)
+.+.+.+...+++|+.. ++..--+-+|..+++...+.++.... ....+... ..+.....+..++..+. .-
T Consensus 15 l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~GKNtl-m~~AL~~~----~~~~~~~~~~~ll~~~~~~~~~l 89 (323)
T PTZ00240 15 LVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTL-QAKIVEKR----AQAKKASAEAKLFNDQCEEKNLL 89 (323)
T ss_pred HHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEecHHH-HHHHHhhc----cccccchhHHHHhhhhccccccc
Confidence 33344445577777665 56666666777777555555554331 11111111 11111111233331110 02
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceE
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAA 109 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~ 109 (129)
..+-.+||+|. ...++.++|.....+.
T Consensus 90 ~GnvgliFTn~--~p~ev~~~l~~~k~~a 116 (323)
T PTZ00240 90 SGNTGLIFTNN--EVQEITSVLDSHRVKA 116 (323)
T ss_pred cCCEEEEEeCC--CHHHHHHHHHHcCCcc
Confidence 46788999875 6778888887654443
No 405
>PF08490 DUF1744: Domain of unknown function (DUF1744); InterPro: IPR013697 This domain is found on the catalytic subunit of DNA polymerase epsilon. It is found C-terminal to IPR006133 from INTERPRO and IPR006134 from INTERPRO. ; GO: 0003887 DNA-directed DNA polymerase activity, 0008270 zinc ion binding, 0006260 DNA replication, 0005634 nucleus
Probab=32.51 E-value=2.2e+02 Score=21.53 Aligned_cols=67 Identities=13% Similarity=0.228 Sum_probs=43.1
Q ss_pred CCCceEEEEEcCccc-hHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc-CceEEEecCCCCh
Q psy9627 51 NHNIQQVVEVCAEHE-KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQ 118 (129)
Q Consensus 51 ~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~-~~~~~~lhg~~~~ 118 (129)
++.+.-.+..+.... -...+-..+..+.....+++|+...|.. ...+...+... .+|+..+|...+.
T Consensus 27 ~~~~~F~v~~~~~~~~a~r~l~~~L~~~~~~~~g~til~lqS~~-~~~l~~~i~~l~~fP~v~i~~~~~d 95 (396)
T PF08490_consen 27 PEDMSFEVQYVTDEKKAYRALQRALSKYKEEKRGPTILVLQSPF-LSRLRSQIPALNEFPVVRIPSNDSD 95 (396)
T ss_pred CCCceEEEEEEeCHHHHHHHHHHHHHHHHhcCCCCEEEEEECch-HHHHHhhCcccccCCEEEecCCcch
Confidence 344444444344433 3344556666665567889999999888 66676666553 6899999876543
No 406
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=32.05 E-value=45 Score=20.28 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.3
Q ss_pred eEEEEEecCcHHHHHHHHHhcc
Q psy9627 15 QVLMWSATWPREVQKLAEDFLD 36 (129)
Q Consensus 15 Q~ll~SAT~~~~v~~~~~~~~~ 36 (129)
-.+-||+.+|+++.+-++..++
T Consensus 72 ~rL~fS~~ip~~v~QriRNvfP 93 (108)
T PF12321_consen 72 VRLHFSRSIPKKVQQRIRNVFP 93 (108)
T ss_pred eEEEEeCCCCHHHhhhhhhcCC
Confidence 4678999999999999998874
No 407
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=31.92 E-value=43 Score=17.58 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=12.1
Q ss_pred CCCcEEEEecccccH
Q psy9627 81 DENKTIIFAETKRKV 95 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~ 95 (129)
..++++.|||++...
T Consensus 24 ~Dgkv~~F~s~Kc~~ 38 (54)
T cd00472 24 NDGKVFRFCSSKCEK 38 (54)
T ss_pred cCCCEEEEECHHHHH
Confidence 578999999987653
No 408
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=31.67 E-value=1.1e+02 Score=22.01 Aligned_cols=36 Identities=8% Similarity=0.165 Sum_probs=27.5
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCceEE-EecCC
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWAAV-GIHGD 115 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~-~lhg~ 115 (129)
...+++|+||.|-.++-...-.|+..|.+-. .|=|+
T Consensus 232 ~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGS 268 (285)
T COG2897 232 DPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGS 268 (285)
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccCh
Confidence 4568999999999999988888888765543 44443
No 409
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=31.43 E-value=1.5e+02 Score=19.78 Aligned_cols=11 Identities=9% Similarity=-0.034 Sum_probs=4.6
Q ss_pred EEEEcCccchH
Q psy9627 57 VVEVCAEHEKE 67 (129)
Q Consensus 57 ~~~~~~~~~k~ 67 (129)
.++.+|++.|+
T Consensus 52 ~lvD~PGH~rl 62 (181)
T PF09439_consen 52 RLVDIPGHPRL 62 (181)
T ss_dssp CEEEETT-HCC
T ss_pred EEEECCCcHHH
Confidence 34444554443
No 410
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=31.41 E-value=99 Score=20.81 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=22.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCc
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGW 107 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~ 107 (129)
.+.+..|||++...+..+...+++.|+
T Consensus 170 ~~~~~ai~~~~d~~a~~~~~~l~~~g~ 196 (261)
T cd06272 170 SDLPTAIICGSYDIALGVLSALNKQGI 196 (261)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHhCC
Confidence 345788999888889889999988776
No 411
>PRK10638 glutaredoxin 3; Provisional
Probab=31.25 E-value=99 Score=17.10 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=22.0
Q ss_pred cEEEEe-cccccHHHHHHHHHhcCceEEEecCCCChhHHH
Q psy9627 84 KTIIFA-ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERD 122 (129)
Q Consensus 84 ~~iVF~-nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~ 122 (129)
++.+|. .++-.|..+-..|...|++.....=+.+...+.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~ 42 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKRE 42 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHH
Confidence 344555 556667777777777776655544333433333
No 412
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=31.00 E-value=81 Score=19.12 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=9.7
Q ss_pred cccccHHHHHHHHHhcCceE
Q psy9627 90 ETKRKVDKITKSIQNYGWAA 109 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~ 109 (129)
||+.-|+.+++.+...|+.+
T Consensus 11 nT~~~A~~i~~~~~~~g~~v 30 (140)
T TIGR01753 11 NTEEMANIIAEGLKEAGAEV 30 (140)
T ss_pred HHHHHHHHHHHHHHhcCCeE
Confidence 44455555555554444443
No 413
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=30.99 E-value=1.8e+02 Score=19.91 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=27.6
Q ss_pred CCcEEEEecccc-----------cHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 82 ENKTIIFAETKR-----------KVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 82 ~~~~iVF~nt~~-----------~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
..+++|+++|.+ .+-.++++++..|-.|..+-=++...
T Consensus 69 ~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 69 LERTVVVAATSDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp GGGEEEEEEETTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred ccccccccccchhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHH
Confidence 468888888866 33467888888888888776665543
No 414
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=30.92 E-value=69 Score=19.41 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=23.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCc
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGW 107 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~ 107 (129)
+.-+..|-|.+.+.++++.+.|.+.|-
T Consensus 71 ~~~sl~i~~~~~ee~~~~f~~Ls~gG~ 97 (116)
T PF06983_consen 71 NNISLCIECDDEEEIDRIFDKLSEGGQ 97 (116)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHTTTE
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHcCCC
Confidence 456888999999999999999998873
No 415
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.86 E-value=1.7e+02 Score=19.72 Aligned_cols=36 Identities=8% Similarity=0.054 Sum_probs=21.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDK 116 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~ 116 (129)
+..-+||+.............+...++++..++...
T Consensus 56 ~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~~~~~ 91 (275)
T cd06317 56 KVDGIILWPTDGQAYIPGLRKAKQAGIPVVITNSNI 91 (275)
T ss_pred CCCEEEEecCCccccHHHHHHHHHCCCcEEEeCCCC
Confidence 334444443333333455577788899998887654
No 416
>KOG1529|consensus
Probab=30.76 E-value=1.5e+02 Score=21.40 Aligned_cols=54 Identities=17% Similarity=0.080 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 67 ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 67 ~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
...|.....+-.-....++|+=|++-=.+..++-.+...|.++..+-|.+..=.
T Consensus 221 ~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g~~~~lYdGS~~Ew~ 274 (286)
T KOG1529|consen 221 AEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSGPDAKLYDGSWTEWA 274 (286)
T ss_pred HHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcCCCcceecccHHHHh
Confidence 344544444321124689999999999999999999999999999999876643
No 417
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=30.76 E-value=1.2e+02 Score=17.76 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=21.0
Q ss_pred CCcEEEEe-cccccHHHHHHHHHhcCceEEEecCC
Q psy9627 82 ENKTIIFA-ETKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 82 ~~~~iVF~-nt~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
..++.||. +++-.|....+.|...|++...+.=+
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid 41 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEID 41 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcC
Confidence 45677776 55666777777777766654444433
No 418
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=30.74 E-value=1.2e+02 Score=21.17 Aligned_cols=63 Identities=19% Similarity=0.367 Sum_probs=38.9
Q ss_pred CceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEec
Q psy9627 13 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAE 90 (129)
Q Consensus 13 ~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~n 90 (129)
+++..-||--+.+++. +++..+.+|..+....+. ++++- .. ...+.+.++++ .+.++++||-.
T Consensus 128 ~rRv~~~S~G~kqkV~-iARAlvh~P~i~vlDEP~----sGLDi-----~~---~r~~~dfi~q~--k~egr~viFSS 190 (245)
T COG4555 128 DRRVGEFSTGMKQKVA-IARALVHDPSILVLDEPT----SGLDI-----RT---RRKFHDFIKQL--KNEGRAVIFSS 190 (245)
T ss_pred HHHHhhhchhhHHHHH-HHHHHhcCCCeEEEcCCC----CCccH-----HH---HHHHHHHHHHh--hcCCcEEEEec
Confidence 3566677777766654 677778888877776544 22221 11 22345566655 35789999973
No 419
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=30.65 E-value=1.3e+02 Score=18.38 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=26.8
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 117 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~ 117 (129)
.++|+..+.+.+..+-+...+.++++....|+-+
T Consensus 2 ~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~ 35 (139)
T PF01565_consen 2 AAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHS 35 (139)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTT
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCC
Confidence 4678888888888888888888888888777643
No 420
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=30.55 E-value=53 Score=24.85 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=25.8
Q ss_pred EecccccHHHHHHHHHhcCceEEEecCC
Q psy9627 88 FAETKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 88 F~nt~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
|=.|...++.+.+.|++.|+.+..+|..
T Consensus 193 fGvTTp~V~~~~~~Le~~G~Ev~VFHAt 220 (403)
T PF06792_consen 193 FGVTTPCVDAIRERLEEEGYEVLVFHAT 220 (403)
T ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 6689999999999999999999999964
No 421
>PRK02922 glycogen synthesis protein GlgS; Provisional
Probab=30.36 E-value=23 Score=19.46 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=22.8
Q ss_pred ccHHHHHHHHH-----hcCceEEEecCCCChhHHHHHH
Q psy9627 93 RKVDKITKSIQ-----NYGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 93 ~~~~~l~~~L~-----~~~~~~~~lhg~~~~~~R~~~l 125 (129)
..-+.++..+. ...|.+..+.|.|++++|..-.
T Consensus 10 ~~~DFlAsS~A~Me~Qgr~Idvd~V~gnmsee~r~~F~ 47 (67)
T PRK02922 10 NNFDFLARSFARMHAEGRPVDIQAVTGNMDEEHRTWFC 47 (67)
T ss_pred cchhHHHHHHHHHHHcCCCccHHHHHhcCCHHHHHHHH
Confidence 34455655552 3467888999999999987543
No 422
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=30.34 E-value=1.8e+02 Score=19.90 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=30.6
Q ss_pred chHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 65 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 65 ~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+.+.+..++. +..+++|+++....-.++++.|.+.|+.
T Consensus 128 r~~~~l~~~~~-----~~~~~vil~~~~~~P~~IA~~L~~~G~~ 166 (210)
T COG2241 128 RPVELLRPLLE-----NGRRLVILTPDDFGPAEIAKLLTENGIG 166 (210)
T ss_pred CCHHHHHHHHh-----CCceEEEeCCCCCCHHHHHHHHHhCCCC
Confidence 44454444442 5789999999999999999999999874
No 423
>KOG0780|consensus
Probab=30.31 E-value=1.2e+02 Score=23.22 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=28.4
Q ss_pred CCcEEEEe-----cccccHHHHHHHHHhcCceEEEecCCC
Q psy9627 82 ENKTIIFA-----ETKRKVDKITKSIQNYGWAAVGIHGDK 116 (129)
Q Consensus 82 ~~~~iVF~-----nt~~~~~~l~~~L~~~~~~~~~lhg~~ 116 (129)
...+|.|+ -....|-.++.++++.|+++..+.++-
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDT 139 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADT 139 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecc
Confidence 35778888 345678899999999999999988873
No 424
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=30.27 E-value=3e+02 Score=24.00 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecc---cccHHHHHHHHHhcCceEEEecC-CCChhHHHHHHh
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAET---KRKVDKITKSIQNYGWAAVGIHG-DKSQQERDYVLK 126 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt---~~~~~~l~~~L~~~~~~~~~lhg-~~~~~~R~~~l~ 126 (129)
..|...+..+ ...+--+|-+|. ++.++|.....+-.|+.|+++-. +|+..+|..+.+
T Consensus 199 Atlp~yLnAL--~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~~~~~~~rr~aY~ 259 (1112)
T PRK12901 199 ATLPVYLNAL--TGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKHQPNSEARRKAYN 259 (1112)
T ss_pred HHHHHHHHHH--cCCCcEEEEechhhhhccHHHHHHHHHHhCCceeecCCCCCCHHHHHHhCC
Confidence 4444555544 355667777775 78889999999999999999955 889999988764
No 425
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=30.24 E-value=1.6e+02 Score=19.09 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=19.5
Q ss_pred CCCcEEEEeccc---ccHHHHHHHHHhcCceEEE
Q psy9627 81 DENKTIIFAETK---RKVDKITKSIQNYGWAAVG 111 (129)
Q Consensus 81 ~~~~~iVF~nt~---~~~~~l~~~L~~~~~~~~~ 111 (129)
...+++|||-+- ..+=-++.+|...|+++..
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 457888888443 3333577778778887766
No 426
>PRK07308 flavodoxin; Validated
Probab=30.22 E-value=81 Score=19.64 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=12.2
Q ss_pred cccccHHHHHHHHHhcCceEE
Q psy9627 90 ETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~ 110 (129)
||.+-|+.+++.|...|+.+.
T Consensus 14 nTe~iA~~ia~~l~~~g~~~~ 34 (146)
T PRK07308 14 NTEEIADIVADKLRELGHDVD 34 (146)
T ss_pred hHHHHHHHHHHHHHhCCCceE
Confidence 555566666666665555443
No 427
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=30.17 E-value=2.1e+02 Score=20.49 Aligned_cols=40 Identities=8% Similarity=-0.016 Sum_probs=28.8
Q ss_pred CCcEEEEeccccc-----------HHHHHHHHHhc-CceEEEecCCCChhHH
Q psy9627 82 ENKTIIFAETKRK-----------VDKITKSIQNY-GWAAVGIHGDKSQQER 121 (129)
Q Consensus 82 ~~~~iVF~nt~~~-----------~~~l~~~L~~~-~~~~~~lhg~~~~~~R 121 (129)
-.+++|+++|-++ +-.++++++.. |..|..+--+++...+
T Consensus 126 ~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 126 LSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 3678888877554 33578888877 8888888887776553
No 428
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=30.17 E-value=77 Score=17.35 Aligned_cols=25 Identities=0% Similarity=0.191 Sum_probs=20.0
Q ss_pred CCcEEEEecccccHHHHHHHHHhcC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYG 106 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~ 106 (129)
.+-++++|.+...++.+.+.+++..
T Consensus 59 G~~v~~l~~~~~~~~~v~~~l~~~~ 83 (85)
T PF08544_consen 59 GPTVFALCKDEDDAERVAEALREHY 83 (85)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC
Confidence 4566678889999999999997653
No 429
>KOG2340|consensus
Probab=30.04 E-value=26 Score=27.67 Aligned_cols=102 Identities=12% Similarity=0.136 Sum_probs=56.6
Q ss_pred ceEEEEEecCcHHHHHHHHHhccCc-cEEEeCCCCc-----ccCCCceEEE--EEcCc-----cchHHHHH-HHHHhhhc
Q psy9627 14 RQVLMWSATWPREVQKLAEDFLDSY-IQINIGSLTL-----SANHNIQQVV--EVCAE-----HEKENKLF-GLLNDISS 79 (129)
Q Consensus 14 ~Q~ll~SAT~~~~v~~~~~~~~~~~-~~i~~~~~~~-----~~~~~i~~~~--~~~~~-----~~k~~~L~-~ll~~~~~ 79 (129)
+|+++||+--.+....+...++.+. -.|...+... .+.-.+.|.+ +.|.+ ..++.+.. .++-++.+
T Consensus 470 rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k 549 (698)
T KOG2340|consen 470 RQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIK 549 (698)
T ss_pred HHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcc
Confidence 8999999999998888887766542 2222211110 1111223322 22333 22333332 22223322
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCceEEEecCC
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
....-++||.++=-.--++-.++++.++....+|--
T Consensus 550 ~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EY 585 (698)
T KOG2340|consen 550 RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEY 585 (698)
T ss_pred cccCceEEEecchhhHHHHHHHhhhhhcchHHHhhh
Confidence 233466999998777778888888877766555543
No 430
>KOG0385|consensus
Probab=29.90 E-value=2.2e+02 Score=23.97 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=33.3
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhc-CceEEEecCCCChhHHHHHHh
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~l~ 126 (129)
..++|.+|-|+...-..|..+.-+-. +++|..|||+- .+|....+
T Consensus 215 ~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gdk--~eR~~~~r 260 (971)
T KOG0385|consen 215 GIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGDK--EERAALRR 260 (971)
T ss_pred CCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCCH--HHHHHHHH
Confidence 45799999998777777777666543 79999999986 55554443
No 431
>PRK08639 threonine dehydratase; Validated
Probab=29.80 E-value=2.5e+02 Score=21.24 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=38.1
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
..+.+|=+.+-+.+.-++..-+..|+++..+-..-....+...++.++
T Consensus 72 ~~~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~G 119 (420)
T PRK08639 72 LAAGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFG 119 (420)
T ss_pred hCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcC
Confidence 356788888899999999998889999998888777666666666553
No 432
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=29.77 E-value=1.2e+02 Score=17.53 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=39.0
Q ss_pred CCceEEEEEcCccchHHHHHHHHHhhhcCC-CCcEEEEeccc------ccHHHHHHHHHhcCceEEEe
Q psy9627 52 HNIQQVVEVCAEHEKENKLFGLLNDISSKD-ENKTIIFAETK------RKVDKITKSIQNYGWAAVGI 112 (129)
Q Consensus 52 ~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~-~~~~iVF~nt~------~~~~~l~~~L~~~~~~~~~l 112 (129)
+.++...+.++++..+..+...|++-...+ ...+.+|||.. ..+..+++.....|.=...+
T Consensus 13 p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~Y 80 (87)
T cd01612 13 PILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVSY 80 (87)
T ss_pred ccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEEE
Confidence 466667777899999988888887544333 35788899764 34445555554445433333
No 433
>PRK02399 hypothetical protein; Provisional
Probab=29.77 E-value=58 Score=24.67 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=28.9
Q ss_pred CCcEEE---EecccccHHHHHHHHHhcCceEEEecCC
Q psy9627 82 ENKTII---FAETKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 82 ~~~~iV---F~nt~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
..+.|- |=.|...++.+.+.|++.|+.|..+|..
T Consensus 185 ~kp~Ig~TmfGvTtp~v~~~~~~Le~~GyEvlVFHAT 221 (406)
T PRK02399 185 DKPLIGLTMFGVTTPCVQAAREELEARGYEVLVFHAT 221 (406)
T ss_pred CCceEEEecCCCcHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 345554 6789999999999999999999999963
No 434
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=29.70 E-value=2.6e+02 Score=21.39 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=46.9
Q ss_pred eEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEec--ccccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 55 QQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAE--TKRKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 55 ~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~n--t~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
.+.++.++...|...|..+++++. .-+-..+||+. .....-.+...+.+.++|+.++.-|.+-.
T Consensus 313 i~~~Lvlsat~K~~dlkei~~~f~-~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~VP 378 (407)
T COG1419 313 IEVYLVLSATTKYEDLKEIIKQFS-LFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRVP 378 (407)
T ss_pred ceEEEEEecCcchHHHHHHHHHhc-cCCcceeEEEcccccCchhHHHHHHHHhCCCeEEEeCCCCCC
Confidence 455667788889999999999874 34568899983 33344456667778899999998876543
No 435
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=29.67 E-value=1.8e+02 Score=19.65 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=6.1
Q ss_pred HHHHhcCceEEEec
Q psy9627 100 KSIQNYGWAAVGIH 113 (129)
Q Consensus 100 ~~L~~~~~~~~~lh 113 (129)
..++..|+++..+.
T Consensus 79 ~~~~~~~iPvv~~~ 92 (272)
T cd06300 79 EEACEAGIPVVSFD 92 (272)
T ss_pred HHHHHCCCeEEEEe
Confidence 33344444444443
No 436
>PRK13019 clpS ATP-dependent Clp protease adaptor; Reviewed
Probab=29.35 E-value=1.3e+02 Score=17.76 Aligned_cols=29 Identities=7% Similarity=0.295 Sum_probs=25.8
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
+..|+++|..-+.+.|+.-...+...|+.
T Consensus 61 H~~G~avv~~~~~E~AE~~~~~l~~~glt 89 (94)
T PRK13019 61 HKEGSAVVWVGPLEQAELYHQQLTDAGLT 89 (94)
T ss_pred hcCCcEEEEEecHHHHHHHHHHHHHcccc
Confidence 46799999999999999999999988853
No 437
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=29.23 E-value=90 Score=19.24 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=18.8
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEE
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~ 110 (129)
...++|||+....--+++-+.-++.++++.
T Consensus 80 ~~~P~iIvt~~~~~p~~l~e~a~~~~ipll 109 (127)
T PF02603_consen 80 YNPPCIIVTRGLEPPPELIELAEKYNIPLL 109 (127)
T ss_dssp TT-S-EEEETTT---HHHHHHHHHCT--EE
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhCCcEE
Confidence 567999999988888888888888777764
No 438
>TIGR01621 RluA-like pseudouridine synthase Rlu family protein, TIGR01621. This model represents a clade of sequences within the pseudouridine synthase superfamily (pfam00849). The superfamily includes E. coli proteins: RluA, RluB, RluC, RluD, and RsuA. The sequences modeled here are most closely related to RluA. Neisseria, among those species hitting this model, does not appear to have an RluA homolog. It is presumed that these sequences function as pseudouridine synthases, although perhaps with different specificity.
Probab=28.90 E-value=94 Score=21.09 Aligned_cols=36 Identities=3% Similarity=0.032 Sum_probs=27.2
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCce---EEEecCCCC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWA---AVGIHGDKS 117 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~---~~~lhg~~~ 117 (129)
-.-+|||+++.+.+..+.+.++...+. .+..+|.+.
T Consensus 54 TSGlll~Ak~~~~~~~L~~~~~~~~v~K~YlAlV~g~~~ 92 (217)
T TIGR01621 54 TSGILLLALNAESASELSQGFAKRKIEKTYLALSSKKPK 92 (217)
T ss_pred CceEEEEEcCHHHHHHHHHHHhcCCccEEEEEEEecccc
Confidence 357889999999999999988876554 445566554
No 439
>PRK08638 threonine dehydratase; Validated
Probab=28.72 E-value=2.3e+02 Score=20.63 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=40.5
Q ss_pred chHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 65 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 65 ~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
-|.......+.........+.||=..+-+.+..++..-...|++|..+-..-....+...++.+
T Consensus 57 ~KdR~a~~~i~~~~~~~~~~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~ 120 (333)
T PRK08638 57 FKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGY 120 (333)
T ss_pred cHHHHHHHHHHhccHHhcCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHc
Confidence 3554444444322111234567767778888888888888899988887765556666666554
No 440
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.65 E-value=2.5e+02 Score=20.85 Aligned_cols=18 Identities=0% Similarity=0.182 Sum_probs=12.7
Q ss_pred cccccHHHHHHHHHhcCc
Q psy9627 90 ETKRKVDKITKSIQNYGW 107 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~ 107 (129)
.+.+.++.+++.++..+.
T Consensus 275 Ds~ed~~~La~ll~~l~~ 292 (356)
T PRK14455 275 DQVEHAEELADLLKGIKC 292 (356)
T ss_pred CCHHHHHHHHHHHhcCCC
Confidence 445778888888876543
No 441
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=28.37 E-value=1.4e+02 Score=19.99 Aligned_cols=28 Identities=7% Similarity=0.213 Sum_probs=19.3
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEE
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~ 110 (129)
++-++++......+.+.+.|++.|..+.
T Consensus 125 ~~~ili~~~~~~~~~l~~~L~~~G~~v~ 152 (249)
T PRK05928 125 GKRVLYLRGNGGREVLGDTLEERGAEVD 152 (249)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCEEe
Confidence 3445555566778899999998876543
No 442
>KOG1530|consensus
Probab=28.23 E-value=1.6e+02 Score=18.68 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=26.7
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEE-EecCC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAV-GIHGD 115 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~-~lhg~ 115 (129)
.-+|+.|.+-.+.-.-.+.|...|++-. -+-|+
T Consensus 90 ~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs 123 (136)
T KOG1530|consen 90 KEIIFGCASGVRSLKATKILVSAGYKNVGNYPGS 123 (136)
T ss_pred CcEEEEeccCcchhHHHHHHHHcCcccccccCcc
Confidence 3899999999999999999999998744 44443
No 443
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=28.15 E-value=27 Score=19.43 Aligned_cols=26 Identities=15% Similarity=0.417 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCceEEEecCCCChhHH
Q psy9627 96 DKITKSIQNYGWAAVGIHGDKSQQER 121 (129)
Q Consensus 96 ~~l~~~L~~~~~~~~~lhg~~~~~~R 121 (129)
.++-+.|++.|+++..+|--.....|
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r 27 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTK 27 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCC
Confidence 56778888889988888766554433
No 444
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=27.96 E-value=65 Score=17.67 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCceEEEecCCCCh
Q psy9627 95 VDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 95 ~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
++++.+.|+..|+++..+|--.+.
T Consensus 1 ~~~I~~~L~~~G~~v~~i~~~~~~ 24 (68)
T PF07530_consen 1 CEEIKEELKDQGHPVRNIHNMHSR 24 (68)
T ss_pred CHHHHHHHHHcCCceEEEEccccC
Confidence 467889999999998887765443
No 445
>PRK09004 FMN-binding protein MioC; Provisional
Probab=27.95 E-value=89 Score=19.74 Aligned_cols=23 Identities=9% Similarity=0.328 Sum_probs=11.8
Q ss_pred cccccHHHHHHHHHhcCceEEEe
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGI 112 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~l 112 (129)
||..-|+.+++.+...|+.+..+
T Consensus 14 nae~~A~~l~~~~~~~g~~~~~~ 36 (146)
T PRK09004 14 GAEYVADHLAEKLEEAGFSTETL 36 (146)
T ss_pred HHHHHHHHHHHHHHHcCCceEEe
Confidence 33444444555555566665543
No 446
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=27.94 E-value=2.1e+02 Score=22.29 Aligned_cols=41 Identities=5% Similarity=0.161 Sum_probs=29.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQER 121 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R 121 (129)
...++||.++|++-|..+.+.++. .++.+..+.|+.+..+.
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q 239 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQ 239 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHH
Confidence 346899999999998877766654 35677777777665443
No 447
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=27.86 E-value=2.5e+02 Score=21.78 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=29.6
Q ss_pred HHHHHHhhhcCCCCcEEEEeccc------ccHHHHHHHHH-hcCceEEEecC
Q psy9627 70 LFGLLNDISSKDENKTIIFAETK------RKVDKITKSIQ-NYGWAAVGIHG 114 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~------~~~~~l~~~L~-~~~~~~~~lhg 114 (129)
|.+++.++......++|+...|| +..+.++..++ +.|+++..+++
T Consensus 85 L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdDle~va~~~~~~~gipVV~v~~ 136 (457)
T CHL00073 85 LKRLCLQIKKDRNPSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGIPIVVARA 136 (457)
T ss_pred HHHHHHHHHHhCCCCEEEEEccCcHHhhccCHHHHHHHHHHhhCCCEEEEeC
Confidence 44455544434456666666664 56778888886 55999888876
No 448
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.67 E-value=2.6e+02 Score=20.72 Aligned_cols=27 Identities=0% Similarity=0.155 Sum_probs=17.4
Q ss_pred EecccccHHHHHHHHHhc--CceEEEecC
Q psy9627 88 FAETKRKVDKITKSIQNY--GWAAVGIHG 114 (129)
Q Consensus 88 F~nt~~~~~~l~~~L~~~--~~~~~~lhg 114 (129)
|-.+.+.++.+++.++.. .+....+|.
T Consensus 266 vNDs~e~a~~La~~l~~l~~~VnLIPynp 294 (345)
T PRK14457 266 VNDLPEHAEELANLLRGFQSHVNLIPYNP 294 (345)
T ss_pred cCCCHHHHHHHHHHHhcCCCeEEEecCCC
Confidence 346677888888888764 344455553
No 449
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=27.44 E-value=3.1e+02 Score=21.67 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=38.4
Q ss_pred ccchHHHHHHHHHhhhcCCCCcEEEEe---cccccHHHHHHHHHhc--CceEEEecCCCCh
Q psy9627 63 EHEKENKLFGLLNDISSKDENKTIIFA---ETKRKVDKITKSIQNY--GWAAVGIHGDKSQ 118 (129)
Q Consensus 63 ~~~k~~~L~~ll~~~~~~~~~~~iVF~---nt~~~~~~l~~~L~~~--~~~~~~lhg~~~~ 118 (129)
+.+....+..+++.+......-+=||. -+...++.+.++++.. ++.+..++|+.+-
T Consensus 462 ~~d~~~~~~~ll~~l~~~~~elvTi~~G~~~~~~~~~~l~~~i~~~~~~veve~~~GgQ~~ 522 (530)
T TIGR03599 462 GKDPEDAAKKLLDKLLDEDSELITIFYGEDATEEEAEELEAFIEEKYPDVEVEIYEGGQPL 522 (530)
T ss_pred cCCHHHHHHHHHHHHhcCCCeEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEEECCCCc
Confidence 345567777888876544444444565 2345677888888764 7899999999763
No 450
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=27.44 E-value=1.2e+02 Score=21.05 Aligned_cols=6 Identities=17% Similarity=0.202 Sum_probs=2.3
Q ss_pred hHHHHH
Q psy9627 66 KENKLF 71 (129)
Q Consensus 66 k~~~L~ 71 (129)
|-..+.
T Consensus 15 KTT~~~ 20 (231)
T PF07015_consen 15 KTTAAM 20 (231)
T ss_pred HHHHHH
Confidence 433333
No 451
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=27.39 E-value=94 Score=21.12 Aligned_cols=25 Identities=4% Similarity=-0.025 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCceEEEecCCCChhH
Q psy9627 96 DKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 96 ~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
.+..++.++.++++..++|||+.--
T Consensus 79 Kef~e~ike~di~fiVvSsGm~~fI 103 (220)
T COG4359 79 KEFVEWIKEHDIPFIVVSSGMDPFI 103 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCchHH
Confidence 4566788889999999999998754
No 452
>PHA02558 uvsW UvsW helicase; Provisional
Probab=27.20 E-value=2.3e+02 Score=21.94 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=21.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYG 106 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~ 106 (129)
...+++|.|+|++-++...+.++..+
T Consensus 157 ~~~~vLilvpt~eL~~Q~~~~l~~~~ 182 (501)
T PHA02558 157 YEGKVLIIVPTTSLVTQMIDDFVDYR 182 (501)
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhc
Confidence 34599999999999999998887643
No 453
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=27.19 E-value=1.2e+02 Score=21.22 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=22.4
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
++.+.-|||.+...|..+...|++.|+.
T Consensus 233 ~~~~~ai~~~~d~~A~g~~~~l~~~g~~ 260 (327)
T PRK10423 233 PLRPQAVFTGNDAMAVGVYQALYQAGLS 260 (327)
T ss_pred CCCCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 4457789998888888888999887763
No 454
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=27.07 E-value=1.7e+02 Score=20.32 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=14.7
Q ss_pred CcEEEEecccccHH--HHHHHHHhcCce
Q psy9627 83 NKTIIFAETKRKVD--KITKSIQNYGWA 108 (129)
Q Consensus 83 ~~~iVF~nt~~~~~--~l~~~L~~~~~~ 108 (129)
+=.|+|+.-+.... ...+.|.+.|++
T Consensus 136 G~~Vf~lTGR~e~~r~~T~~nL~~~G~~ 163 (229)
T TIGR01675 136 GIKIFLLSGRWEELRNATLDNLINAGFT 163 (229)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 33456664454332 255778777776
No 455
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=27.07 E-value=1.2e+02 Score=21.50 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=21.9
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
..+.-|||.+-..|..+...|++.|++
T Consensus 233 ~~~~ai~~~~D~~A~g~~~al~~~g~~ 259 (327)
T PRK10339 233 DYPKALFVASDSIAIGVLRAIHERGLN 259 (327)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCC
Confidence 346788998888898999999988763
No 456
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=27.01 E-value=1.4e+02 Score=25.14 Aligned_cols=40 Identities=13% Similarity=0.340 Sum_probs=27.6
Q ss_pred CCCcEEEEe-cccccHHHHHHHHHhc---------------------------CceEEEecCCCChhH
Q psy9627 81 DENKTIIFA-ETKRKVDKITKSIQNY---------------------------GWAAVGIHGDKSQQE 120 (129)
Q Consensus 81 ~~~~~iVF~-nt~~~~~~l~~~L~~~---------------------------~~~~~~lhg~~~~~~ 120 (129)
...+.+||+ +|+.-|+.+++.++.. ++++..+.|+.+...
T Consensus 60 ~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~ 127 (844)
T TIGR02621 60 KVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADND 127 (844)
T ss_pred cccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHH
Confidence 345677766 8888877666555432 378899999987654
No 457
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.97 E-value=2.7e+02 Score=20.80 Aligned_cols=85 Identities=13% Similarity=0.159 Sum_probs=38.7
Q ss_pred EEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-cchHHHHHHHHHhhhcCCCCcEEE-Ee------
Q psy9627 18 MWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGLLNDISSKDENKTII-FA------ 89 (129)
Q Consensus 18 l~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~~~iV-F~------ 89 (129)
+-+.-+++.+.+++...+..-..|.+.... +.....+++... ...+..+.+.++.+......++.| |+
T Consensus 215 isT~Gl~~~i~~L~~~gl~~~LaiSL~a~~----~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvN 290 (368)
T PRK14456 215 ISTVGITPEIDRLATSGLKTKLAVSLHSAD----QEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGIN 290 (368)
T ss_pred EECCCChHHHHHHHHcCCCceEEEEecCCC----HHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCC
Confidence 333335666666665544323334444322 222223332222 223444555554332222334333 11
Q ss_pred cccccHHHHHHHHHhcC
Q psy9627 90 ETKRKVDKITKSIQNYG 106 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~ 106 (129)
.+.+.++.++++++...
T Consensus 291 Ds~eda~~L~~~l~~~~ 307 (368)
T PRK14456 291 DSPEDARKLIRFASRFF 307 (368)
T ss_pred CCHHHHHHHHHHHhcCC
Confidence 34456888888887653
No 458
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=26.87 E-value=86 Score=18.26 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=19.3
Q ss_pred EEEEeccc----ccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 85 TIIFAETK----RKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 85 ~iVF~nt~----~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
+++.|.+- -.++.+.+.+++.|+++...|.+..+
T Consensus 2 Il~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~ 39 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESE 39 (96)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHH
Confidence 45566332 23445555556677777666666544
No 459
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=26.77 E-value=2e+02 Score=19.23 Aligned_cols=27 Identities=11% Similarity=-0.026 Sum_probs=21.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCc
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGW 107 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~ 107 (129)
.+.+..|||.+...+..+.+.+++.|+
T Consensus 175 ~~~~~ai~~~~d~~a~~~~~~l~~~g~ 201 (268)
T cd01575 175 WPDLDAVFCSNDDLALGALFECQRRGI 201 (268)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHhCC
Confidence 445677888888888888888887765
No 460
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=26.62 E-value=56 Score=21.53 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=17.4
Q ss_pred cccccHHHHHHHHHhcCceEE
Q psy9627 90 ETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~ 110 (129)
+|++-|+.++..|++.|+.|.
T Consensus 13 qT~kIA~~iA~~L~e~g~qvd 33 (175)
T COG4635 13 QTRKIAEYIASHLRESGIQVD 33 (175)
T ss_pred cHHHHHHHHHHHhhhcCCeee
Confidence 678889999999998887764
No 461
>cd02557 PseudoU_synth_ScRIB2 PseudoU_synth_ScRIB2_like: Pseudouridine synthase, Saccharomyces cerevisiae RIB2_like. This group is comprised of eukaryotic and bacterial proteins similar to Saccharomyces cerevisiae RIB2, S. cerevisiae Pus6p and human hRPUDSD2. S. cerevisiae RIB2 displays two distinct catalytic activities. The N-terminal domain of RIB2 is RNA:psi-synthase which makes psi32 on cytoplasmic tRNAs. Psi32 is highly phylogenetically conserved. The C-terminal domain of RIB2 has a DRAP deaminase activity which catalyses the formation of 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate from 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate during riboflavin biosynthesis. S. cerevisiae Pus6p makes the psi31 of cytoplasmic and mitochondrial tRNAs.
Probab=26.52 E-value=1.2e+02 Score=20.42 Aligned_cols=36 Identities=14% Similarity=0.338 Sum_probs=27.3
Q ss_pred CcEEEEecccccHHHHHHHHHhcCce---EEEecCCCCh
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWA---AVGIHGDKSQ 118 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~---~~~lhg~~~~ 118 (129)
.-+|+|+++.+.+..+.+.+++..+. .+...|.++.
T Consensus 71 SGllllak~~~~~~~l~~~f~~~~v~K~Y~a~v~G~~~~ 109 (213)
T cd02557 71 SGLLLFAKTSQTASRLQQQIRSREVKKEYLARVKGEFPD 109 (213)
T ss_pred ceEEEEECCHHHHHHHHHHHHcCCccEEEEEEEeCcCCC
Confidence 57889999999999999998876543 4456666543
No 462
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=26.46 E-value=48 Score=23.29 Aligned_cols=27 Identities=4% Similarity=0.086 Sum_probs=18.6
Q ss_pred cccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 92 KRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 92 ~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
|+.++++.+.|.+.++|+..+++|+..
T Consensus 92 Rdg~~~~f~~L~~~~IP~lIFSAGlgd 118 (246)
T PF05822_consen 92 RDGVEEFFDKLEEHNIPLLIFSAGLGD 118 (246)
T ss_dssp -BTHHHHHHHHHCTT--EEEEEEEEHH
T ss_pred hcCHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 677888888888888888888877643
No 463
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.34 E-value=2.8e+02 Score=20.81 Aligned_cols=79 Identities=11% Similarity=0.198 Sum_probs=37.3
Q ss_pred CcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEE-Ee------cccccH
Q psy9627 23 WPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTII-FA------ETKRKV 95 (129)
Q Consensus 23 ~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iV-F~------nt~~~~ 95 (129)
+.+.+.+++...+..-..|.+...+ +.....++.......+..+.+.++.+......++.| |+ .+.+.|
T Consensus 224 l~~~i~~la~~~l~~~LavSLha~d----~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a 299 (373)
T PRK14459 224 LVPAIRKLADEGLPVTLAVSLHAPD----DELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRA 299 (373)
T ss_pred chhHHHHHHHhcCCeEEEEEeCCCC----HHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHH
Confidence 5666777766654433444444333 223333333322223344444444332222223332 22 556677
Q ss_pred HHHHHHHHhc
Q psy9627 96 DKITKSIQNY 105 (129)
Q Consensus 96 ~~l~~~L~~~ 105 (129)
+.+++.++..
T Consensus 300 ~~L~~llk~~ 309 (373)
T PRK14459 300 DLLGKKLHGR 309 (373)
T ss_pred HHHHHHHhhc
Confidence 8888888765
No 464
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=26.34 E-value=1.2e+02 Score=16.58 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=19.4
Q ss_pred CCCcEEEEe-cccccHHHHHHHHHhcCceEEEec
Q psy9627 81 DENKTIIFA-ETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 81 ~~~~~iVF~-nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
...++.||. ..+-.|...-+.|...|++...+.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~id 39 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIP 39 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEE
Confidence 345566665 446666666666666666655443
No 465
>KOG0334|consensus
Probab=26.26 E-value=1.8e+02 Score=24.90 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=37.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+..=+||-|+|+..|..+.+.++. .|+.+.+.+|+-++.+-..-++.+
T Consensus 437 dGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg 488 (997)
T KOG0334|consen 437 DGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRG 488 (997)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcC
Confidence 334567788999999887777654 599999999999988876666543
No 466
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=26.13 E-value=1.9e+02 Score=18.62 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=34.3
Q ss_pred EEEcCccchHHHHHHHHHhhhcCCCCcEEEEecc--cccHHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 58 VEVCAEHEKENKLFGLLNDISSKDENKTIIFAET--KRKVDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 58 ~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt--~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
++.|++..-+..+.+.+. .....+|-++= ...+..+-+.|...|.+ ..|||+.+..-
T Consensus 21 V~VvENp~Vf~~~~~~~~-----~~~~pLVCt~G~p~~A~~~LL~~L~~~g~~-l~y~GDfDp~G 79 (152)
T PF09664_consen 21 VYVVENPAVFSALADELG-----ASCPPLVCTSGQPSAAARRLLDRLAAAGAR-LYYSGDFDPEG 79 (152)
T ss_pred EEEEecHHHHHHHHHhcC-----CCCCeEEEcCCcHHHHHHHHHHHHHhCCCE-EEEecCCCHHH
Confidence 677777665555444322 34455554422 33444566777777864 47999999865
No 467
>PRK11761 cysM cysteine synthase B; Provisional
Probab=26.09 E-value=2.5e+02 Score=20.05 Aligned_cols=47 Identities=17% Similarity=0.098 Sum_probs=37.6
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
++.+|=..+-+.+..++..-+..|++|..+-..-....+.+.++.++
T Consensus 63 g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~G 109 (296)
T PRK11761 63 GDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYG 109 (296)
T ss_pred CCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcC
Confidence 46677788888899999988899999999888766667777776653
No 468
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=26.09 E-value=1.6e+02 Score=20.51 Aligned_cols=16 Identities=6% Similarity=0.333 Sum_probs=7.4
Q ss_pred HHHHHHHhcCceEEEe
Q psy9627 97 KITKSIQNYGWAAVGI 112 (129)
Q Consensus 97 ~l~~~L~~~~~~~~~l 112 (129)
-++..|...|++|..+
T Consensus 78 v~AR~L~~~G~~V~v~ 93 (246)
T PLN03050 78 VAARHLAHFGYEVTVC 93 (246)
T ss_pred HHHHHHHHCCCeEEEE
Confidence 3444444444444443
No 469
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=26.08 E-value=2.8e+02 Score=20.70 Aligned_cols=46 Identities=11% Similarity=0.176 Sum_probs=39.0
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
-+.+-..+....+.++-++|.+.|+.+..=|++-+-++=.++++++
T Consensus 167 i~~vTlAPE~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~G 212 (380)
T TIGR00221 167 ITKVTLAPEEDQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAG 212 (380)
T ss_pred EEEEEECCCCCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcC
Confidence 4566677878889999999999999999999999988877777664
No 470
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=26.06 E-value=1.1e+02 Score=16.17 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=14.0
Q ss_pred EEEEe-cccccHHHHHHHHHhcCceEEE
Q psy9627 85 TIIFA-ETKRKVDKITKSIQNYGWAAVG 111 (129)
Q Consensus 85 ~iVF~-nt~~~~~~l~~~L~~~~~~~~~ 111 (129)
+.||. ..+..|....+.|...|++...
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~i~~~~ 30 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENGISYEE 30 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEE
Confidence 44444 4455555555556555555433
No 471
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=25.97 E-value=76 Score=21.50 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=23.7
Q ss_pred cccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 92 KRKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 92 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
...+.++...++..|+.+..++|+.+.-
T Consensus 79 ~~ga~elv~~lk~~G~~v~iiSgg~~~l 106 (212)
T COG0560 79 TPGAEELVAALKAAGAKVVIISGGFTFL 106 (212)
T ss_pred CccHHHHHHHHHHCCCEEEEEcCChHHH
Confidence 4568889999999999999999997743
No 472
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=25.93 E-value=2.5e+02 Score=20.09 Aligned_cols=63 Identities=10% Similarity=-0.071 Sum_probs=41.7
Q ss_pred chHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 65 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 65 ~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.|......++..... .....||=..+-+.+..++..-+..|++|..+...-....+...++.+
T Consensus 53 ~K~R~a~~~l~~a~~-~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~ 115 (324)
T cd01563 53 FKDRGMTVAVSKAKE-LGVKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAY 115 (324)
T ss_pred HHHhhHHHHHHHHHH-cCCCEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHc
Confidence 365555555544322 235567666788888888888888899999888765555555555554
No 473
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=25.91 E-value=2.6e+02 Score=20.28 Aligned_cols=55 Identities=13% Similarity=0.217 Sum_probs=36.5
Q ss_pred ccchHHHHHHHHHhhhcCCCCcEEEEe---cccccHHHHHHHHHhc--CceEEEecCCCC
Q psy9627 63 EHEKENKLFGLLNDISSKDENKTIIFA---ETKRKVDKITKSIQNY--GWAAVGIHGDKS 117 (129)
Q Consensus 63 ~~~k~~~L~~ll~~~~~~~~~~~iVF~---nt~~~~~~l~~~L~~~--~~~~~~lhg~~~ 117 (129)
+.+....+..+++.+......-+-||. -+...++.+.+.++.. ++.+..+.|+.+
T Consensus 245 ~~~~~~~~~~ll~~l~~~~~elvTi~~G~~~~~~~a~~l~~~l~~~~p~~eve~~~GgQ~ 304 (313)
T PF13684_consen 245 GKDLEEALKKLLEKLLDEDGELVTIYYGEDVSEEEAEALAEFLEEKYPDVEVEVYDGGQP 304 (313)
T ss_pred cCCHHHHHHHHHHHhhccCCeEEEEEecCCCCHHHHHHHHHHHHHHhCCeEEEEEECCCc
Confidence 445667777888776444444444444 3344777888888664 788999999876
No 474
>PF13058 DUF3920: Protein of unknown function (DUF3920)
Probab=25.90 E-value=59 Score=19.91 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=10.5
Q ss_pred CcEEEEecccccHHH
Q psy9627 83 NKTIIFAETKRKVDK 97 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~ 97 (129)
.--+|||.|++.-+-
T Consensus 25 ~~pviFcdTc~an~v 39 (126)
T PF13058_consen 25 HIPVIFCDTCDANKV 39 (126)
T ss_pred cCCeEEecccchhHH
Confidence 445799999886443
No 475
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=25.87 E-value=1.4e+02 Score=22.08 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=23.8
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCc
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW 107 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~ 107 (129)
....++++......++||+|++-+.+..+.....+.|+
T Consensus 173 ~~~~Lk~lk~~~~~rIIi~~s~~~~~~~il~qA~~lgm 210 (368)
T cd06383 173 VREQIKRLRNLDIKNIFILGSTEEIIRYVLDQALAEGF 210 (368)
T ss_pred HHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 33555555433445889999886777777666665543
No 476
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=25.87 E-value=1.6e+02 Score=19.87 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=22.1
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCc
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGW 107 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~ 107 (129)
.+....|||++-..+.-+...+++.|+
T Consensus 181 ~~~~~av~~~~d~~a~g~~~al~~~g~ 207 (273)
T cd01541 181 PERPTAIVCYNDEIALRVIDLLKELGL 207 (273)
T ss_pred CCCCCEEEEcCcHHHHHHHHHHHHcCC
Confidence 456778899999999888888888775
No 477
>TIGR02554 PrgH type III secretion system protein PrgH/EprH. In Samonella, this gene is part of a four-gene operon PrgHIJK and in general is found in type III secretion operons. PrgH has been shown to be required for secretion, as well as being a structural component of the needle complex.
Probab=25.87 E-value=1.2e+02 Score=22.88 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=14.4
Q ss_pred CCcEEEEecccccHHHHHHHHHh
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQN 104 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~ 104 (129)
.+.+.|.++|.+.++|..+.|.+
T Consensus 188 Dg~iyVla~~qrd~~W~~Q~Llk 210 (389)
T TIGR02554 188 DGRIYVAAASQRDAEWARQALLR 210 (389)
T ss_pred CCcEEEEEccccHhHHHHHHHhh
Confidence 34566666666666666666654
No 478
>KOG0071|consensus
Probab=25.86 E-value=2e+02 Score=18.79 Aligned_cols=48 Identities=13% Similarity=0.253 Sum_probs=30.8
Q ss_pred CCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEe---cccccHHHHHHHHH
Q psy9627 51 NHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFA---ETKRKVDKITKSIQ 103 (129)
Q Consensus 51 ~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~---nt~~~~~~l~~~L~ 103 (129)
-.|++-.+-.+.+.+|+.-+++-+- ...+.+||+ .++++.++-.+.|.
T Consensus 58 ykN~kfNvwdvGGqd~iRplWrhYy-----~gtqglIFV~Dsa~~dr~eeAr~ELh 108 (180)
T KOG0071|consen 58 YKNVKFNVWDVGGQDKIRPLWRHYY-----TGTQGLIFVVDSADRDRIEEARNELH 108 (180)
T ss_pred eeeeEEeeeeccCchhhhHHHHhhc-----cCCceEEEEEeccchhhHHHHHHHHH
Confidence 3566777777888888776655443 466888888 34455555555553
No 479
>KOG0090|consensus
Probab=25.80 E-value=2.3e+02 Score=19.79 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=23.4
Q ss_pred EEEEcCccchHHHHHHHHHhhhcCCCCcEEEEe--------cccccHHHHHHHHH
Q psy9627 57 VVEVCAEHEKENKLFGLLNDISSKDENKTIIFA--------ETKRKVDKITKSIQ 103 (129)
Q Consensus 57 ~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~--------nt~~~~~~l~~~L~ 103 (129)
..+.+|++.+... .+++.+..+..-+.|||+ |-++.++.+++.|-
T Consensus 85 ~LVD~PGH~rlR~--kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~ 137 (238)
T KOG0090|consen 85 TLVDLPGHSRLRR--KLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILL 137 (238)
T ss_pred EEEeCCCcHHHHH--HHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHH
Confidence 4456677666532 333333223345778887 23445555555553
No 480
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=25.80 E-value=2.8e+02 Score=20.48 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=38.0
Q ss_pred EEEcCccchHHHHHHHHHhhhcCCCCcEEEEeccc-----ccHHHHHHHHHhcCceEEEecC
Q psy9627 58 VEVCAEHEKENKLFGLLNDISSKDENKTIIFAETK-----RKVDKITKSIQNYGWAAVGIHG 114 (129)
Q Consensus 58 ~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~-----~~~~~l~~~L~~~~~~~~~lhg 114 (129)
+.-+.+......-+++++.+.+ +-+++-|++|+. ..++++-.+.++.|+++....-
T Consensus 136 vTGvsD~~~v~q~i~lik~~~P-nak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v 196 (322)
T COG2984 136 VTGVSDLLPVAQQIELIKALLP-NAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAV 196 (322)
T ss_pred eeecCCcchHHHHHHHHHHhCC-CCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEec
Confidence 3444555567777788887742 346666888554 4677777888888998876654
No 481
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=25.74 E-value=1.2e+02 Score=17.72 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=9.6
Q ss_pred cccccHHHHHHHHHhcCceE
Q psy9627 90 ETKRKVDKITKSIQNYGWAA 109 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~ 109 (129)
+++..|...-++|++.|++.
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~ 26 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEY 26 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCc
Confidence 34444455555555555443
No 482
>PTZ00424 helicase 45; Provisional
Probab=25.72 E-value=2.5e+02 Score=20.59 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=31.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~ 123 (129)
...++||.+++++-+..+.+.+... ++.+..+.|+....+...
T Consensus 95 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 141 (401)
T PTZ00424 95 NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDIN 141 (401)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHH
Confidence 3468999999999988887777554 567777888876654433
No 483
>PTZ00061 DNA-directed RNA polymerase; Provisional
Probab=25.55 E-value=2.3e+02 Score=19.43 Aligned_cols=16 Identities=6% Similarity=0.017 Sum_probs=7.8
Q ss_pred EEEecCCCChhHHHHH
Q psy9627 109 AVGIHGDKSQQERDYV 124 (129)
Q Consensus 109 ~~~lhg~~~~~~R~~~ 124 (129)
+..++++|++..|..+
T Consensus 98 IlV~q~~ltp~Ar~~i 113 (205)
T PTZ00061 98 ILVTQNVLTPFAKDAI 113 (205)
T ss_pred EEEECCCCCHHHHHHH
Confidence 3344555555555444
No 484
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=25.51 E-value=2.1e+02 Score=19.19 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=19.1
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
-++|-...-..+.+...+=...++..+.+||+....
T Consensus 4 naVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~ 39 (184)
T PF14572_consen 4 NAVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDS 39 (184)
T ss_dssp GEEEEESSGGGHHHHHHHHHHCT-EEEEE-------
T ss_pred CCEEEeCCCCchHhHHHHHHHhCCCeeEecCccccc
Confidence 455666666666666666666788999999997653
No 485
>PRK01172 ski2-like helicase; Provisional
Probab=25.51 E-value=2.1e+02 Score=23.08 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=34.7
Q ss_pred HHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh---cCceEEEecCCCChh
Q psy9627 71 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQ 119 (129)
Q Consensus 71 ~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~---~~~~~~~lhg~~~~~ 119 (129)
..+++.+. ...++|+.++++.-|+..++.++. .|+.+..+.|+.+..
T Consensus 56 lail~~l~--~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~ 105 (674)
T PRK01172 56 SAIYETFL--AGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDP 105 (674)
T ss_pred HHHHHHHH--hCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCC
Confidence 34444442 356889999999999988887764 488899999987654
No 486
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=25.40 E-value=1.9e+02 Score=18.53 Aligned_cols=42 Identities=5% Similarity=0.154 Sum_probs=30.7
Q ss_pred EEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 85 TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
+=||..|-++--.+-+..+-.|+++.....+-++..+.+++.
T Consensus 46 V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~ 87 (152)
T COG4087 46 VDIYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIR 87 (152)
T ss_pred heEEEecCCcchHHHHHHHHcCCceeeeecccCHHHHHHHHH
Confidence 567777777777777777777788877777777777666654
No 487
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.39 E-value=1.8e+02 Score=18.24 Aligned_cols=48 Identities=4% Similarity=0.032 Sum_probs=35.8
Q ss_pred CCceEEEEEcCc----cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHH
Q psy9627 52 HNIQQVVEVCAE----HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQ 103 (129)
Q Consensus 52 ~~i~~~~~~~~~----~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~ 103 (129)
..+...++.+.. .+.+..+.+.+.. ..++++.||.|-.++-.++..-+
T Consensus 57 aGl~y~~iPV~~~~iT~~dV~~f~~Al~e----aegPVlayCrsGtRs~~ly~~~~ 108 (130)
T COG3453 57 AGLTYTHIPVTGGGITEADVEAFQRALDE----AEGPVLAYCRSGTRSLNLYGLGE 108 (130)
T ss_pred cCCceEEeecCCCCCCHHHHHHHHHHHHH----hCCCEEeeecCCchHHHHHHHHH
Confidence 356677777766 4456667777775 57899999999999988877654
No 488
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=25.33 E-value=3.5e+02 Score=23.75 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=45.0
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhHHHHHHhc
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
.++.+..+.. .+..|+.|.|+|.=-|+-.++.++++ ++.+..++.-.+.++...+++.
T Consensus 631 VAmRAAFkAV--~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~ 692 (1139)
T COG1197 631 VAMRAAFKAV--MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKG 692 (1139)
T ss_pred HHHHHHHHHh--cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHH
Confidence 3455555554 35689999999999999988888764 6678899998888888877753
No 489
>PF09480 PrgH: Type III secretion system protein PrgH-EprH (PrgH); InterPro: IPR019029 In Salmonella, the gene encoding this protein is part of a four-gene operon PrgHIJK, while in other organisms it is found in type III secretion operons. PrgH has been shown to be required for type III secretion and is a structural component of the needle complex, which is the core component of type III secretion systems. ; GO: 0016021 integral to membrane; PDB: 4A4Y_A 2XXS_A 2Y9J_C 3GR1_F 3GR0_D.
Probab=25.31 E-value=92 Score=23.36 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=19.1
Q ss_pred hHHHHHHHHHhh------hcCCCCcEEEEecccccHHHHHHHHHh
Q psy9627 66 KENKLFGLLNDI------SSKDENKTIIFAETKRKVDKITKSIQN 104 (129)
Q Consensus 66 k~~~L~~ll~~~------~~~~~~~~iVF~nt~~~~~~l~~~L~~ 104 (129)
+...|..+|..- .....+.+.|++++.+.++|..+.|.+
T Consensus 156 ~v~~L~~lL~g~~~p~~Il~g~d~~iyVla~~qrd~~W~rQ~L~k 200 (375)
T PF09480_consen 156 QVKTLNELLAGSPSPYTILPGRDGKIYVLASTQRDAEWARQALLK 200 (375)
T ss_dssp -HHHHHHHCGGGTTTEEEEE-TTS-EEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEeCCCccEEEEECcchHHHHHHHHHHh
Confidence 555555555321 112334566666666666666655543
No 490
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=25.30 E-value=2.3e+02 Score=21.68 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=38.1
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
..|-..|...|... ...=.+.-||.-..-+.++..|.+.|++|...+|.-.+
T Consensus 58 ~~~Ta~l~~~L~~~---GA~v~~~~~np~Stqd~vaaaL~~~gi~v~a~~~~~~~ 109 (425)
T PRK05476 58 TIQTAVLIETLKAL---GAEVRWASCNPFSTQDDVAAALAAAGIPVFAWKGETLE 109 (425)
T ss_pred cccHHHHHHHHHHc---CCEEEEEeCCCcccCHHHHHHHHHCCceEEecCCCCHH
Confidence 34556666666652 23345667788888899999999999999999887544
No 491
>cd02869 PseudoU_synth_RluCD_like PseudoU_synth_RsuA/RluD: Pseudouridine synthase, RsuA/RluD family. This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF and TruA. Pseudouridine synthases catalyze the isomerization of specific uridines in a n RNA molecule to pseudouridines (5-ribosyluracil, psi) requiring no cofactors. E. coli RluC for example makes psi955, 2504 and 2580 in 23S RNA. Some psi sites such as psi1917 in 23S RNA made by RluD are universally conserved. Other psi sites occur in a more restricted fashion, for example psi2819 in 21S mitochondrial ribosomal RNA made by S. cerevisiae Pus5p is only found in mitochondrial large subunit rRNAs from some other species and in gram negative bacteria. The E. coli counterpart of this psi residue is psi2580 in 23S rRNA. psi2604in 23S RNA made by RluF has only been detected in E.coli.
Probab=25.18 E-value=1.4e+02 Score=19.20 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=27.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce---EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA---AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~---~~~lhg~~~~ 118 (129)
+-.-+++|+++.+.+..+.+.++...+. .+..+|..+.
T Consensus 49 ~tsGlll~ak~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~ 89 (185)
T cd02869 49 DTSGLLLVAKNKKAAAKLSKQFKERKVKKTYLALVDGKPPE 89 (185)
T ss_pred CCceEEEEEcCHHHHHHHHHHHhcCceeEEEEEEEeCCCCC
Confidence 3467888999999999999998765443 4456666544
No 492
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=25.07 E-value=1.8e+02 Score=18.00 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=13.8
Q ss_pred ccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 93 RKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 93 ~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
...+.+...++..+..+..++.++...
T Consensus 38 ~~~~~l~~~l~~~~~~~~~~~~D~~~~ 64 (167)
T PF00106_consen 38 EGAQELIQELKAPGAKITFIECDLSDP 64 (167)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESETTSH
T ss_pred ccccccccccccccccccccccccccc
Confidence 444555555555555555555554443
No 493
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=25.04 E-value=3.1e+02 Score=20.81 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=34.9
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEec----cccc-HHHHHHHHHh-cCceEEEecCCCChh
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAE----TKRK-VDKITKSIQN-YGWAAVGIHGDKSQQ 119 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~n----t~~~-~~~l~~~L~~-~~~~~~~lhg~~~~~ 119 (129)
..+...+.++++.+ +..-+|.+++ +-.. ...+.+.+.+ .|+|+..+.+++...
T Consensus 336 ~~R~~~l~~l~ke~---~aDGVI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE~D~~d~ 394 (413)
T TIGR02260 336 PMRVDLLEKYINEY---EADGLLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIETDLVDP 394 (413)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEEcCCCCc
Confidence 34777788888874 4455665443 2222 3344566665 799999999998765
No 494
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=25.02 E-value=1.6e+02 Score=19.70 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=20.4
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHG 114 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg 114 (129)
+=+||+.+...-....+.|++.|+++..+..
T Consensus 59 PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~ 89 (235)
T cd01149 59 PTLVIASDEAGPPEALDQLRAAGVPVVTVPS 89 (235)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCeEEEecC
Confidence 4455665433334667888888999887753
No 495
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.02 E-value=1.5e+02 Score=20.01 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=22.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+.+.-|||.+-..+..+...+++.|++
T Consensus 173 ~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 200 (265)
T cd06285 173 DSPPTAIFAVNDFAAIGVMGAARDRGLR 200 (265)
T ss_pred CCCCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 3456789998888888899999888774
No 496
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=24.79 E-value=2.8e+02 Score=21.97 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=36.8
Q ss_pred CCCcEEEEecccccHHHHHHHHHh-cCc---eEEEecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN-YGW---AAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~-~~~---~~~~lhg~~~~~~R~~~l~ 126 (129)
.++++|+-.+|+--+...++.+.+ .|+ .++.|.|..++.+|...-.
T Consensus 57 ~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~ 106 (542)
T COG1111 57 FGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA 106 (542)
T ss_pred cCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh
Confidence 455788888999999888888865 366 4779999999999987643
No 497
>KOG3128|consensus
Probab=24.69 E-value=1.4e+02 Score=21.47 Aligned_cols=27 Identities=4% Similarity=0.043 Sum_probs=21.3
Q ss_pred cccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 92 KRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 92 ~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
++.++.+++.|+..+|++..+..++..
T Consensus 140 Reg~~~ff~~L~~~~IP~~iFSAGigd 166 (298)
T KOG3128|consen 140 REGYEEFFEALQAHEIPLLIFSAGIGD 166 (298)
T ss_pred HHHHHHHHHHHHhCCCceEEEecchHH
Confidence 556778888888888888888887654
No 498
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.68 E-value=1.5e+02 Score=19.97 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=21.9
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+....|||.+-..+..+...|++.|+.
T Consensus 175 ~~~~~ai~~~~d~~a~~~~~~l~~~g~~ 202 (269)
T cd06288 175 DDRPTAIFCGNDRMAMGAYQALLERGLR 202 (269)
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHcCCC
Confidence 3456778888888888888999887763
No 499
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=24.68 E-value=1.4e+02 Score=21.13 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=22.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+.+.-|||.+...|..+...|++.|+.
T Consensus 237 ~~~~~ai~~~nD~~A~g~~~al~~~g~~ 264 (331)
T PRK14987 237 YPQLDGVFCTNDDLAVGAAFECQRLGLK 264 (331)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHcCCC
Confidence 3456789998888888888888887764
No 500
>PRK00321 rdgC recombination associated protein; Reviewed
Probab=24.64 E-value=1.4e+02 Score=21.59 Aligned_cols=40 Identities=10% Similarity=0.201 Sum_probs=32.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc--CceEEEecCCCChhH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQE 120 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~ 120 (129)
..+-++|+..|.+.|+.+...|++. ++++..++-..+...
T Consensus 132 ~~g~l~VdasS~k~aE~~l~lLrkslgsLpv~p~~~~~~p~~ 173 (303)
T PRK00321 132 VNGLIVVDAASAKKAEDVLALLRKSLGSLPVVPLSTEQSPEA 173 (303)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHhcCCCceeccccCCCHHH
Confidence 3456677778899999999999874 789999988877665
Done!