Query psy9627
Match_columns 129
No_of_seqs 116 out of 1166
Neff 9.8
Searched_HMMs 29240
Date Sat Aug 17 00:35:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 99.8 6.7E-20 2.3E-24 134.0 13.9 113 11-128 234-346 (434)
2 2j0s_A ATP-dependent RNA helic 99.8 4.8E-18 1.7E-22 122.6 11.4 120 5-128 202-322 (410)
3 2i4i_A ATP-dependent RNA helic 99.8 9.7E-18 3.3E-22 121.0 12.9 113 13-128 210-322 (417)
4 1xti_A Probable ATP-dependent 99.8 2.2E-17 7.5E-22 118.2 14.4 121 5-128 176-296 (391)
5 3fht_A ATP-dependent RNA helic 99.7 3.9E-17 1.3E-21 117.5 13.1 120 5-128 192-312 (412)
6 3eiq_A Eukaryotic initiation f 99.7 2.6E-17 9E-22 118.6 11.1 121 4-128 205-326 (414)
7 1s2m_A Putative ATP-dependent 99.7 2E-16 6.7E-21 113.7 14.3 119 5-128 186-304 (400)
8 3fmp_B ATP-dependent RNA helic 99.7 7.2E-18 2.5E-22 124.3 5.5 120 5-128 259-379 (479)
9 3pey_A ATP-dependent RNA helic 99.7 2.4E-16 8.1E-21 112.6 12.7 120 5-128 169-289 (395)
10 2p6n_A ATP-dependent RNA helic 99.7 1.9E-16 6.6E-21 104.3 8.3 92 32-128 9-100 (191)
11 1hv8_A Putative ATP-dependent 99.7 1.7E-15 5.9E-20 107.2 13.5 115 5-128 170-284 (367)
12 1fuu_A Yeast initiation factor 99.7 8.3E-17 2.9E-21 115.2 5.1 120 5-128 185-305 (394)
13 2v1x_A ATP-dependent DNA helic 99.6 1.6E-14 5.6E-19 109.2 12.5 117 8-128 195-313 (591)
14 3fho_A ATP-dependent RNA helic 99.6 1.3E-15 4.4E-20 113.3 6.3 120 5-128 283-403 (508)
15 3sqw_A ATP-dependent RNA helic 99.6 1.3E-14 4.5E-19 109.3 11.5 118 11-128 211-337 (579)
16 1t5i_A C_terminal domain of A 99.6 9.7E-15 3.3E-19 94.6 9.0 75 51-128 3-77 (172)
17 3i5x_A ATP-dependent RNA helic 99.6 2.7E-14 9.1E-19 107.0 12.2 118 11-128 262-388 (563)
18 2hjv_A ATP-dependent RNA helic 99.6 1.7E-14 5.9E-19 92.6 9.2 77 49-128 5-81 (163)
19 2rb4_A ATP-dependent RNA helic 99.5 2.7E-14 9.1E-19 92.6 8.4 76 50-128 4-80 (175)
20 2jgn_A DBX, DDX3, ATP-dependen 99.5 2.7E-14 9.2E-19 93.6 7.3 78 49-128 15-92 (185)
21 1fuk_A Eukaryotic initiation f 99.5 5.8E-14 2E-18 90.2 8.6 74 52-128 2-76 (165)
22 1oyw_A RECQ helicase, ATP-depe 99.5 3.8E-13 1.3E-17 100.5 12.4 108 12-128 173-282 (523)
23 2z0m_A 337AA long hypothetical 99.4 1.1E-12 3.7E-17 91.9 10.4 111 5-128 152-262 (337)
24 3i32_A Heat resistant RNA depe 99.4 1.6E-12 5.6E-17 91.0 8.8 73 53-128 2-74 (300)
25 3eaq_A Heat resistant RNA depe 99.4 1.7E-12 5.9E-17 86.6 7.6 73 53-128 5-77 (212)
26 2xau_A PRE-mRNA-splicing facto 99.4 1.9E-12 6.4E-17 100.6 8.8 111 11-128 238-360 (773)
27 2yjt_D ATP-dependent RNA helic 99.1 6E-14 2.1E-18 90.6 0.0 74 52-128 2-76 (170)
28 3l9o_A ATP-dependent RNA helic 99.4 4.3E-12 1.5E-16 101.7 10.4 123 3-128 311-526 (1108)
29 2eyq_A TRCF, transcription-rep 99.3 1.4E-11 4.9E-16 99.1 9.2 117 4-128 742-860 (1151)
30 2xgj_A ATP-dependent RNA helic 99.3 4.5E-11 1.5E-15 95.2 11.0 122 4-128 214-428 (1010)
31 3oiy_A Reverse gyrase helicase 99.2 6.5E-12 2.2E-16 90.8 4.0 92 12-115 192-286 (414)
32 4a4z_A Antiviral helicase SKI2 99.2 3.3E-10 1.1E-14 90.2 13.1 61 65-128 322-421 (997)
33 2d7d_A Uvrabc system protein B 99.2 2.4E-10 8.1E-15 87.6 11.3 107 12-128 385-491 (661)
34 4ddu_A Reverse gyrase; topoiso 99.2 3E-11 1E-15 96.9 5.9 92 12-114 249-342 (1104)
35 1c4o_A DNA nucleotide excision 99.1 5.4E-10 1.8E-14 85.7 11.0 107 12-128 379-485 (664)
36 1gku_B Reverse gyrase, TOP-RG; 99.1 9.9E-12 3.4E-16 99.3 -0.5 98 11-118 213-310 (1054)
37 1tf5_A Preprotein translocase 99.0 1.6E-09 5.5E-14 84.2 10.1 109 15-128 369-478 (844)
38 2fsf_A Preprotein translocase 99.0 2.9E-09 9.9E-14 82.8 10.8 109 15-128 378-487 (853)
39 3jux_A Protein translocase sub 99.0 1.3E-09 4.3E-14 83.9 8.5 108 15-127 411-519 (822)
40 1wp9_A ATP-dependent RNA helic 99.0 2.4E-09 8.1E-14 77.7 9.7 65 64-128 342-415 (494)
41 2zj8_A DNA helicase, putative 99.0 6.1E-10 2.1E-14 85.9 6.6 111 6-128 162-316 (720)
42 2p6r_A Afuhel308 helicase; pro 99.0 7.6E-10 2.6E-14 85.1 7.0 48 81-128 241-318 (702)
43 2whx_A Serine protease/ntpase/ 99.0 6.2E-11 2.1E-15 90.2 0.6 91 12-128 307-397 (618)
44 2ykg_A Probable ATP-dependent 99.0 4.1E-10 1.4E-14 86.2 4.6 66 63-128 378-456 (696)
45 1yks_A Genome polyprotein [con 99.0 5.3E-11 1.8E-15 87.2 -0.4 92 11-128 128-219 (440)
46 2oca_A DAR protein, ATP-depend 98.9 6E-10 2E-14 82.5 4.2 125 3-128 242-393 (510)
47 1nkt_A Preprotein translocase 98.9 1.1E-08 3.7E-13 80.0 11.1 109 15-128 397-506 (922)
48 2va8_A SSO2462, SKI2-type heli 98.9 1.2E-08 4.2E-13 78.5 10.7 48 81-128 251-334 (715)
49 3o8b_A HCV NS3 protease/helica 98.9 1.2E-09 4.2E-14 83.5 4.4 41 81-121 395-435 (666)
50 2wv9_A Flavivirin protease NS2 98.9 2.9E-09 9.8E-14 81.8 5.9 44 81-128 409-452 (673)
51 2v6i_A RNA helicase; membrane, 98.9 3.8E-09 1.3E-13 77.2 6.3 44 81-128 170-213 (431)
52 4gl2_A Interferon-induced heli 98.8 5.2E-09 1.8E-13 80.1 6.2 47 82-128 400-460 (699)
53 4a2p_A RIG-I, retinoic acid in 98.8 1.9E-08 6.5E-13 74.7 8.3 66 64-129 371-449 (556)
54 2z83_A Helicase/nucleoside tri 98.8 1.3E-09 4.5E-14 80.2 1.0 92 11-128 141-232 (459)
55 1z5z_A Helicase of the SNF2/RA 98.8 1.3E-08 4.4E-13 70.2 5.7 67 61-128 92-159 (271)
56 2jlq_A Serine protease subunit 98.7 4.8E-09 1.7E-13 77.0 3.5 92 11-128 139-230 (451)
57 4f92_B U5 small nuclear ribonu 98.7 1E-07 3.5E-12 79.5 11.0 115 9-128 1079-1235(1724)
58 4a2q_A RIG-I, retinoic acid in 98.7 1.2E-07 4.2E-12 73.9 10.5 66 64-129 612-690 (797)
59 4f92_B U5 small nuclear ribonu 98.6 1.4E-07 4.7E-12 78.7 9.4 116 9-128 240-400 (1724)
60 3h1t_A Type I site-specific re 98.6 6.4E-08 2.2E-12 73.0 6.6 47 81-128 438-492 (590)
61 1gm5_A RECG; helicase, replica 98.6 2.7E-08 9.2E-13 77.5 4.1 111 9-128 512-635 (780)
62 3dmq_A RNA polymerase-associat 98.6 7.3E-08 2.5E-12 76.7 5.9 65 61-128 485-550 (968)
63 2fwr_A DNA repair protein RAD2 98.5 4.3E-09 1.5E-13 77.3 -1.7 59 62-128 332-390 (472)
64 3rc3_A ATP-dependent RNA helic 98.5 2.8E-08 9.4E-13 76.4 2.1 47 82-128 320-366 (677)
65 3tbk_A RIG-I helicase domain; 98.4 2.1E-07 7.2E-12 69.0 4.3 66 64-129 370-448 (555)
66 1z3i_X Similar to RAD54-like; 98.4 5E-07 1.7E-11 69.1 6.1 65 64-128 398-462 (644)
67 1z63_A Helicase of the SNF2/RA 98.4 5.7E-07 1.9E-11 66.4 6.1 65 63-128 323-388 (500)
68 4a2w_A RIG-I, retinoic acid in 98.3 6.3E-07 2.2E-11 71.1 5.3 65 64-128 612-689 (936)
69 3mwy_W Chromo domain-containin 98.3 2.5E-06 8.4E-11 66.7 7.5 64 64-128 555-618 (800)
70 3fe2_A Probable ATP-dependent 98.2 2E-06 6.8E-11 57.9 5.9 44 4-47 198-241 (242)
71 1wrb_A DJVLGB; RNA helicase, D 98.2 2.6E-06 9E-11 57.6 5.3 45 13-58 209-253 (253)
72 3fmo_B ATP-dependent RNA helic 98.1 5.3E-06 1.8E-10 57.8 6.0 41 5-45 259-299 (300)
73 3ber_A Probable ATP-dependent 98.0 1.1E-05 3.6E-10 54.7 5.5 41 4-44 208-248 (249)
74 2pl3_A Probable ATP-dependent 98.0 1.2E-05 4.2E-10 53.7 5.2 42 4-45 193-234 (236)
75 3bor_A Human initiation factor 97.9 8.6E-06 2.9E-10 54.6 4.3 41 5-45 196-236 (237)
76 3iuy_A Probable ATP-dependent 97.9 1E-05 3.4E-10 53.8 4.6 40 4-43 189-228 (228)
77 2gxq_A Heat resistant RNA depe 97.9 1.6E-05 5.3E-10 51.9 5.0 40 5-44 167-206 (207)
78 1q0u_A Bstdead; DEAD protein, 97.9 1.4E-05 4.7E-10 52.9 4.6 43 4-46 172-214 (219)
79 3dkp_A Probable ATP-dependent 97.9 1.8E-05 6.2E-10 53.1 5.0 37 11-47 208-244 (245)
80 1qde_A EIF4A, translation init 97.8 2.1E-05 7E-10 52.0 4.6 44 4-47 177-220 (224)
81 2oxc_A Probable ATP-dependent 97.8 1.9E-05 6.4E-10 52.7 3.6 40 5-44 190-229 (230)
82 1t6n_A Probable ATP-dependent 97.7 2.5E-05 8.4E-10 51.6 3.6 39 5-43 182-220 (220)
83 3ly5_A ATP-dependent RNA helic 97.3 0.00024 8.1E-09 48.4 4.5 36 4-39 223-258 (262)
84 2w00_A HSDR, R.ECOR124I; ATP-b 96.8 0.00094 3.2E-08 53.8 4.2 25 82-106 537-561 (1038)
85 4a15_A XPD helicase, ATP-depen 96.7 0.0055 1.9E-07 46.8 7.1 108 12-128 374-491 (620)
86 3gk5_A Uncharacterized rhodane 96.1 0.0095 3.3E-07 34.9 4.5 48 70-119 45-92 (108)
87 2jtq_A Phage shock protein E; 96.0 0.026 8.9E-07 31.3 5.8 38 80-118 39-77 (85)
88 3iwh_A Rhodanese-like domain p 95.7 0.01 3.4E-07 34.7 3.4 37 81-117 55-91 (103)
89 1wv9_A Rhodanese homolog TT165 95.7 0.011 3.7E-07 33.6 3.4 36 83-118 54-89 (94)
90 3flh_A Uncharacterized protein 95.6 0.021 7.1E-07 34.3 4.6 38 81-118 70-109 (124)
91 3eme_A Rhodanese-like domain p 95.6 0.012 4E-07 34.1 3.4 38 81-118 55-92 (103)
92 3foj_A Uncharacterized protein 95.5 0.012 4.1E-07 33.9 3.2 38 81-118 55-92 (100)
93 3g5j_A Putative ATP/GTP bindin 95.5 0.02 6.7E-07 34.4 4.3 37 83-119 90-127 (134)
94 1gmx_A GLPE protein; transfera 95.3 0.031 1.1E-06 32.5 4.6 39 81-119 57-96 (108)
95 2ipc_A Preprotein translocase 95.2 0.24 8.3E-06 39.7 10.1 84 15-103 380-464 (997)
96 2fsx_A RV0390, COG0607: rhodan 94.9 0.045 1.6E-06 33.8 4.6 37 81-117 79-116 (148)
97 3hix_A ALR3790 protein; rhodan 94.8 0.021 7.3E-07 33.2 2.8 38 81-118 51-89 (106)
98 1qxn_A SUD, sulfide dehydrogen 94.8 0.04 1.4E-06 33.7 4.1 38 81-118 81-119 (137)
99 1tq1_A AT5G66040, senescence-a 94.7 0.029 9.8E-07 33.9 3.2 38 81-118 81-119 (129)
100 2k0z_A Uncharacterized protein 94.6 0.047 1.6E-06 31.9 4.0 39 80-118 54-92 (110)
101 3d1p_A Putative thiosulfate su 94.5 0.041 1.4E-06 33.5 3.6 38 81-118 90-128 (139)
102 3nhv_A BH2092 protein; alpha-b 94.5 0.038 1.3E-06 34.1 3.4 38 81-118 71-110 (144)
103 2hhg_A Hypothetical protein RP 94.1 0.035 1.2E-06 33.7 2.8 38 81-118 85-123 (139)
104 3crv_A XPD/RAD3 related DNA he 94.1 0.49 1.7E-05 35.4 9.4 55 68-125 379-433 (551)
105 1urh_A 3-mercaptopyruvate sulf 94.0 0.16 5.5E-06 34.5 6.2 39 81-119 229-268 (280)
106 1vee_A Proline-rich protein fa 93.9 0.08 2.7E-06 32.1 4.1 37 81-117 73-110 (134)
107 3ilm_A ALR3790 protein; rhodan 93.6 0.054 1.8E-06 33.3 2.9 38 81-118 55-93 (141)
108 1t6n_A Probable ATP-dependent 93.0 0.55 1.9E-05 30.3 7.3 44 83-126 83-131 (220)
109 3hgt_A HDA1 complex subunit 3; 92.9 0.28 9.4E-06 34.6 5.9 57 62-119 106-162 (328)
110 1e0c_A Rhodanese, sulfurtransf 92.6 0.13 4.3E-06 34.8 3.9 39 80-118 221-260 (271)
111 1urh_A 3-mercaptopyruvate sulf 92.4 0.2 7E-06 34.0 4.7 49 70-118 74-124 (280)
112 3oiy_A Reverse gyrase helicase 91.9 0.67 2.3E-05 33.0 7.1 45 80-124 62-109 (414)
113 3tg1_B Dual specificity protei 91.9 0.15 5.2E-06 31.7 3.3 37 82-118 93-138 (158)
114 1rhs_A Sulfur-substituted rhod 91.2 0.28 9.6E-06 33.7 4.4 39 81-119 239-278 (296)
115 2l82_A Designed protein OR32; 91.2 0.59 2E-05 27.6 5.1 44 85-128 5-48 (162)
116 1uar_A Rhodanese; sulfurtransf 91.1 0.31 1.1E-05 33.1 4.5 49 70-118 221-271 (285)
117 4f67_A UPF0176 protein LPG2838 90.8 0.17 5.7E-06 34.6 2.9 40 81-120 180-220 (265)
118 3aay_A Putative thiosulfate su 90.7 0.34 1.2E-05 32.8 4.4 49 70-118 214-264 (277)
119 2ouc_A Dual specificity protei 90.2 0.24 8.2E-06 29.8 3.0 37 82-118 83-128 (142)
120 1e0c_A Rhodanese, sulfurtransf 90.2 0.45 1.6E-05 32.0 4.6 49 70-118 69-119 (271)
121 2oxc_A Probable ATP-dependent 90.1 1.4 4.9E-05 28.7 6.9 62 64-125 72-140 (230)
122 2eg4_A Probable thiosulfate su 90.0 0.29 9.9E-06 32.3 3.4 38 81-118 183-220 (230)
123 2wlr_A Putative thiosulfate su 89.8 0.47 1.6E-05 34.3 4.7 38 81-118 202-240 (423)
124 3hzu_A Thiosulfate sulfurtrans 89.7 0.6 2.1E-05 32.5 5.0 50 69-118 98-149 (318)
125 1xti_A Probable ATP-dependent 89.7 1.6 5.4E-05 30.5 7.3 45 82-126 76-125 (391)
126 2v1x_A ATP-dependent DNA helic 89.6 0.83 2.9E-05 34.6 6.1 46 81-126 83-128 (591)
127 3olh_A MST, 3-mercaptopyruvate 89.5 0.29 9.8E-06 33.9 3.2 49 70-118 242-291 (302)
128 3fe2_A Probable ATP-dependent 88.9 2.6 8.8E-05 27.6 7.5 46 81-126 101-150 (242)
129 3i2v_A Adenylyltransferase and 88.6 0.31 1.1E-05 28.8 2.6 37 83-119 73-116 (127)
130 3tbk_A RIG-I helicase domain; 88.3 1.1 3.8E-05 32.8 5.9 40 82-121 52-95 (555)
131 2vl7_A XPD; helicase, unknown 88.3 0.3 1E-05 36.5 2.8 54 70-128 372-425 (540)
132 3aay_A Putative thiosulfate su 88.1 0.99 3.4E-05 30.4 5.2 49 70-118 65-115 (277)
133 3ber_A Probable ATP-dependent 88.0 3 0.0001 27.6 7.4 62 64-125 91-158 (249)
134 1gm5_A RECG; helicase, replica 87.7 1.1 3.6E-05 35.3 5.6 46 81-126 416-465 (780)
135 3h11_A CAsp8 and FADD-like apo 87.6 0.29 9.9E-06 33.6 2.2 47 81-128 42-88 (272)
136 1uar_A Rhodanese; sulfurtransf 87.6 0.65 2.2E-05 31.5 4.0 49 70-118 67-117 (285)
137 4ddu_A Reverse gyrase; topoiso 87.6 1.9 6.5E-05 35.3 7.1 45 80-124 119-166 (1104)
138 2j6p_A SB(V)-AS(V) reductase; 87.2 3.5 0.00012 25.2 6.9 38 82-119 67-113 (152)
139 3hzu_A Thiosulfate sulfurtrans 86.8 0.36 1.2E-05 33.6 2.4 38 81-118 258-297 (318)
140 1oyw_A RECQ helicase, ATP-depe 86.2 2.3 8E-05 31.6 6.6 44 82-125 65-108 (523)
141 1rhs_A Sulfur-substituted rhod 86.0 1.5 5.1E-05 30.0 5.1 49 70-118 80-132 (296)
142 4a2p_A RIG-I, retinoic acid in 85.9 1.8 6E-05 31.8 5.8 40 82-121 55-98 (556)
143 2wlr_A Putative thiosulfate su 85.8 0.95 3.3E-05 32.7 4.2 38 81-118 357-395 (423)
144 1okg_A Possible 3-mercaptopyru 85.7 1.9 6.6E-05 30.7 5.7 39 80-118 93-133 (373)
145 1t3k_A Arath CDC25, dual-speci 85.7 1.8 6.3E-05 26.6 5.0 39 81-119 84-132 (152)
146 3ntd_A FAD-dependent pyridine 85.6 0.6 2.1E-05 34.8 3.2 38 81-118 523-560 (565)
147 2pl3_A Probable ATP-dependent 85.5 2.8 9.4E-05 27.3 6.1 45 81-125 96-144 (236)
148 1yt8_A Thiosulfate sulfurtrans 85.4 1.8 6.3E-05 32.3 5.7 38 81-118 321-359 (539)
149 1wp9_A ATP-dependent RNA helic 84.7 3.4 0.00012 29.3 6.7 45 81-125 51-99 (494)
150 3iuy_A Probable ATP-dependent 84.5 3 0.0001 26.9 5.9 45 81-125 93-140 (228)
151 4a2q_A RIG-I, retinoic acid in 84.4 2.4 8E-05 33.2 6.1 40 82-121 296-339 (797)
152 2eg4_A Probable thiosulfate su 84.2 2.8 9.6E-05 27.4 5.7 33 82-115 61-95 (230)
153 2gxq_A Heat resistant RNA depe 84.2 3.1 0.00011 26.2 5.8 45 81-125 71-117 (207)
154 3ics_A Coenzyme A-disulfide re 83.7 0.82 2.8E-05 34.3 3.2 39 81-119 540-578 (588)
155 2h54_A Caspase-1; allosteric s 83.6 1.9 6.6E-05 27.5 4.5 46 82-128 43-99 (178)
156 1vec_A ATP-dependent RNA helic 83.1 6.3 0.00022 24.8 6.9 55 70-124 58-118 (206)
157 1okg_A Possible 3-mercaptopyru 83.0 0.9 3.1E-05 32.5 3.0 38 82-119 246-284 (373)
158 3h11_B Caspase-8; cell death, 83.0 1.6 5.4E-05 29.8 4.1 47 81-128 16-83 (271)
159 1qde_A EIF4A, translation init 82.6 2.8 9.5E-05 26.9 5.1 60 64-123 62-127 (224)
160 1yt8_A Thiosulfate sulfurtrans 82.1 2 6.9E-05 32.1 4.7 39 80-118 61-100 (539)
161 3e4c_A Caspase-1; zymogen, inf 81.9 2 6.7E-05 29.9 4.3 45 83-128 61-116 (302)
162 1rif_A DAR protein, DNA helica 81.2 0.63 2.1E-05 31.5 1.6 25 3-27 242-266 (282)
163 3olh_A MST, 3-mercaptopyruvate 80.9 3.1 0.00011 28.6 5.1 49 70-118 95-147 (302)
164 1c25_A CDC25A; hydrolase, cell 80.7 1.2 4E-05 27.6 2.6 38 82-119 87-138 (161)
165 3tp9_A Beta-lactamase and rhod 80.2 0.94 3.2E-05 33.2 2.3 38 81-118 426-464 (474)
166 1hv8_A Putative ATP-dependent 79.9 8.9 0.00031 26.2 7.2 62 64-125 55-121 (367)
167 2fp3_A Caspase NC; apoptosis, 79.5 2.4 8.1E-05 29.7 4.1 48 81-129 60-119 (316)
168 3dmn_A Putative DNA helicase; 79.5 9 0.00031 23.9 8.1 86 24-115 8-94 (174)
169 1fuu_A Yeast initiation factor 78.1 13 0.00044 25.8 7.6 60 66-125 71-136 (394)
170 2lnd_A De novo designed protei 77.4 7.1 0.00024 21.6 6.2 46 70-116 40-87 (112)
171 1qtn_A Caspase-8; apoptosis, d 77.4 3.4 0.00011 26.0 4.0 47 81-128 22-89 (164)
172 2db3_A ATP-dependent RNA helic 77.0 8.6 0.00029 27.6 6.6 45 82-126 129-177 (434)
173 3od5_A Caspase-6; caspase doma 76.9 3.7 0.00013 28.1 4.4 47 81-128 20-80 (278)
174 3p45_A Caspase-6; protease, hu 76.8 4.8 0.00016 25.8 4.6 47 81-128 43-103 (179)
175 3ly5_A ATP-dependent RNA helic 76.4 13 0.00045 24.6 7.0 45 81-125 125-173 (262)
176 1pyo_A Caspase-2; apoptosis, c 76.2 3.7 0.00013 25.9 4.0 47 81-128 32-92 (167)
177 1wrb_A DJVLGB; RNA helicase, D 75.5 14 0.00049 24.1 7.2 43 83-125 101-147 (253)
178 1m72_A Caspase-1; caspase, cys 75.4 3.4 0.00012 28.2 3.9 46 82-128 32-90 (272)
179 1hzm_A Dual specificity protei 75.3 1.4 4.9E-05 26.8 1.8 39 81-119 91-139 (154)
180 2nn3_C Caspase-1; cysteine pro 75.2 3.9 0.00013 28.6 4.2 48 81-129 59-119 (310)
181 2dko_A Caspase-3; low barrier 75.1 3 0.0001 25.7 3.2 46 82-128 16-75 (146)
182 4a2w_A RIG-I, retinoic acid in 75.0 4.4 0.00015 32.4 4.9 39 82-120 296-338 (936)
183 3ipz_A Monothiol glutaredoxin- 74.6 9.7 0.00033 21.8 6.0 43 81-123 16-64 (109)
184 2fz4_A DNA repair protein RAD2 74.1 11 0.00039 24.7 6.1 50 64-117 119-169 (237)
185 1tf5_A Preprotein translocase 73.8 11 0.00038 30.1 6.7 45 81-125 123-171 (844)
186 1qb0_A Protein (M-phase induce 73.7 3.5 0.00012 26.8 3.5 37 82-118 109-159 (211)
187 1q0u_A Bstdead; DEAD protein, 73.5 9.5 0.00032 24.3 5.6 55 66-120 54-118 (219)
188 3sxu_A DNA polymerase III subu 73.5 7.4 0.00025 24.0 4.8 36 66-102 24-59 (150)
189 3sir_A Caspase; hydrolase; 2.6 73.3 3.2 0.00011 28.1 3.3 36 92-128 43-78 (259)
190 3zyw_A Glutaredoxin-3; metal b 72.5 11 0.00039 21.6 5.7 44 81-124 14-63 (111)
191 3bor_A Human initiation factor 71.7 11 0.00038 24.4 5.7 56 66-121 80-141 (237)
192 1nkt_A Preprotein translocase 71.7 14 0.00047 29.8 6.8 45 81-125 151-199 (922)
193 3op3_A M-phase inducer phospha 71.6 2.8 9.6E-05 27.6 2.6 35 84-118 126-172 (216)
194 1nw9_B Caspase 9, apoptosis-re 71.1 5.6 0.00019 27.1 4.1 47 81-128 20-80 (277)
195 2ykg_A Probable ATP-dependent 71.0 7.8 0.00027 29.5 5.3 37 83-119 62-102 (696)
196 2i4i_A ATP-dependent RNA helic 70.9 13 0.00043 26.1 6.1 43 83-125 102-148 (417)
197 2fsf_A Preprotein translocase 70.8 15 0.00053 29.3 6.9 44 81-124 114-161 (853)
198 2fwr_A DNA repair protein RAD2 70.7 4.4 0.00015 29.3 3.8 50 65-118 120-170 (472)
199 2z0m_A 337AA long hypothetical 70.5 11 0.00036 25.5 5.5 44 82-125 56-103 (337)
200 1u6t_A SH3 domain-binding glut 70.3 4.3 0.00015 24.2 3.0 38 90-127 14-51 (121)
201 3r2u_A Metallo-beta-lactamase 69.3 0.97 3.3E-05 33.2 0.0 38 81-118 424-462 (466)
202 1wik_A Thioredoxin-like protei 68.0 14 0.00048 20.9 5.9 43 82-124 14-62 (109)
203 2lqo_A Putative glutaredoxin R 67.6 14 0.00047 20.6 5.9 44 83-126 4-48 (92)
204 2j32_A Caspase-3; Pro-caspase3 66.9 7.9 0.00027 26.0 4.1 46 82-128 16-75 (250)
205 1s2m_A Putative ATP-dependent 66.9 29 0.00098 24.1 7.3 60 64-123 69-134 (400)
206 2ipc_A Preprotein translocase 66.0 20 0.00069 29.1 6.7 45 81-125 119-167 (997)
207 2j0s_A ATP-dependent RNA helic 65.8 17 0.00058 25.5 5.9 63 64-126 85-153 (410)
208 2yan_A Glutaredoxin-3; oxidore 65.3 16 0.00054 20.5 5.3 42 82-123 16-63 (105)
209 2a2k_A M-phase inducer phospha 65.0 5 0.00017 25.0 2.7 37 82-118 89-139 (175)
210 1gku_B Reverse gyrase, TOP-RG; 64.0 21 0.0007 29.2 6.6 60 66-126 84-151 (1054)
211 2ql9_A Caspase-7; cysteine pro 63.9 5.4 0.00018 25.4 2.7 35 93-128 69-103 (173)
212 1qle_D Cytochrome AA3, ccytoch 63.5 2.5 8.6E-05 20.4 0.8 18 111-128 3-20 (43)
213 1v5x_A PRA isomerase, phosphor 63.3 16 0.00053 23.8 4.9 38 81-120 52-89 (203)
214 3jx9_A Putative phosphoheptose 63.1 15 0.0005 23.3 4.6 35 80-114 76-112 (170)
215 1f1j_A Caspase-7 protease; cas 62.9 5.8 0.0002 27.6 2.9 46 82-128 69-128 (305)
216 4ehd_A Caspase-3; caspase, apo 62.5 7.9 0.00027 26.5 3.5 46 82-128 44-103 (277)
217 3qmx_A Glutaredoxin A, glutare 61.9 19 0.00064 20.1 5.8 43 81-123 14-57 (99)
218 2vsw_A Dual specificity protei 61.8 2.3 7.8E-05 25.9 0.6 39 81-119 77-124 (153)
219 1t1v_A SH3BGRL3, SH3 domain-bi 60.7 18 0.00063 19.7 6.0 41 84-124 3-50 (93)
220 3b6e_A Interferon-induced heli 60.5 6.5 0.00022 24.8 2.7 38 82-119 82-123 (216)
221 1nsj_A PRAI, phosphoribosyl an 59.8 17 0.00058 23.6 4.6 38 81-120 53-90 (205)
222 2eyq_A TRCF, transcription-rep 57.7 38 0.0013 27.9 7.2 46 81-126 651-700 (1151)
223 1wz3_A Autophagy 12B, ATG12B, 56.8 25 0.00085 20.0 5.5 61 52-114 25-91 (96)
224 3eiq_A Eukaryotic initiation f 56.7 47 0.0016 23.1 7.2 60 66-125 90-155 (414)
225 3gx8_A Monothiol glutaredoxin- 55.3 29 0.00098 20.2 6.3 43 82-124 15-66 (121)
226 3utn_X Thiosulfate sulfurtrans 55.2 9.2 0.00031 26.8 2.9 38 81-118 274-312 (327)
227 2gk6_A Regulator of nonsense t 55.0 38 0.0013 25.7 6.4 51 64-114 206-256 (624)
228 3fmo_B ATP-dependent RNA helic 53.5 41 0.0014 22.8 5.9 55 64-118 142-203 (300)
229 2wci_A Glutaredoxin-4; redox-a 52.9 14 0.00048 22.2 3.1 43 82-124 34-82 (135)
230 3dkp_A Probable ATP-dependent 52.6 18 0.00061 23.4 3.9 53 64-116 77-136 (245)
231 8tfv_A Protein (thanatin); bac 52.1 4 0.00014 15.9 0.3 9 84-92 6-14 (21)
232 3gr1_A Protein PRGH; type III 51.2 24 0.00082 23.5 4.2 21 84-104 28-48 (227)
233 3f4a_A Uncharacterized protein 50.4 13 0.00045 23.2 2.8 36 83-118 105-148 (169)
234 4gl2_A Interferon-induced heli 49.4 4.8 0.00016 30.7 0.7 41 82-122 56-100 (699)
235 5nul_A Flavodoxin; electron tr 48.8 15 0.0005 21.6 2.8 23 90-112 11-33 (138)
236 2wjy_A Regulator of nonsense t 48.7 51 0.0017 26.1 6.4 51 64-114 382-432 (800)
237 1pii_A N-(5'phosphoribosyl)ant 47.8 32 0.0011 25.4 4.8 38 81-120 304-341 (452)
238 3w1s_C Ubiquitin-like protein 46.7 37 0.0013 19.0 6.2 61 52-114 20-86 (91)
239 3s5u_A Putative uncharacterize 46.1 61 0.0021 21.3 5.7 49 66-117 148-201 (220)
240 2oca_A DAR protein, ATP-depend 45.8 30 0.001 25.2 4.5 40 81-120 156-199 (510)
241 3qhq_A CSN2, SAG0897 family cr 45.7 57 0.002 21.6 5.4 47 66-115 148-199 (229)
242 2ct6_A SH3 domain-binding glut 45.5 41 0.0014 19.1 6.3 44 83-126 8-58 (111)
243 1rif_A DAR protein, DNA helica 44.3 46 0.0016 22.1 5.0 38 81-118 156-197 (282)
244 2wem_A Glutaredoxin-related pr 44.1 46 0.0016 19.3 5.6 43 82-124 19-68 (118)
245 3q87_B N6 adenine specific DNA 43.2 54 0.0018 19.9 6.1 44 67-113 104-147 (170)
246 3hly_A Flavodoxin-like domain; 42.9 26 0.00088 21.4 3.3 24 90-113 13-36 (161)
247 3fni_A Putative diflavin flavo 42.5 28 0.00095 21.3 3.4 25 90-114 17-41 (159)
248 1fov_A Glutaredoxin 3, GRX3; a 42.3 35 0.0012 17.5 4.4 7 105-111 50-56 (82)
249 3f6r_A Flavodoxin; FMN binding 41.4 26 0.00091 20.7 3.1 24 90-113 14-37 (148)
250 2l82_A Designed protein OR32; 41.2 53 0.0018 19.2 4.5 44 84-128 79-125 (162)
251 4gdk_A Ubiquitin-like protein 40.1 49 0.0017 18.5 6.1 63 52-114 17-86 (91)
252 3sbx_A Putative uncharacterize 39.0 43 0.0015 21.5 3.9 29 81-109 12-47 (189)
253 1v9k_A Ribosomal large subunit 38.5 46 0.0016 21.7 4.1 37 83-119 57-96 (228)
254 3h75_A Periplasmic sugar-bindi 38.3 91 0.0031 21.1 7.3 38 82-119 62-99 (350)
255 1e2b_A Enzyme IIB-cellobiose; 38.2 45 0.0015 19.0 3.6 37 84-120 5-45 (106)
256 2xzl_A ATP-dependent helicase 37.7 49 0.0017 26.1 4.8 50 64-113 386-435 (802)
257 4aaj_A N-(5'-phosphoribosyl)an 37.4 87 0.003 20.6 5.6 26 95-120 81-106 (228)
258 3hjh_A Transcription-repair-co 37.3 18 0.00063 26.7 2.2 29 82-110 382-410 (483)
259 3fht_A ATP-dependent RNA helic 37.3 1E+02 0.0034 21.3 6.3 55 64-118 75-136 (412)
260 3dwg_A Cysteine synthase B; su 36.9 1E+02 0.0035 21.2 6.5 65 64-128 51-118 (325)
261 2hna_A Protein MIOC, flavodoxi 36.9 49 0.0017 19.5 3.9 23 90-112 14-36 (147)
262 2fz5_A Flavodoxin; alpha/beta 36.7 32 0.0011 19.8 2.9 24 90-113 12-35 (137)
263 2khp_A Glutaredoxin; thioredox 35.9 51 0.0017 17.5 4.9 6 105-110 55-60 (92)
264 2i82_A Ribosomal large subunit 35.8 45 0.0015 21.6 3.8 36 83-118 66-104 (217)
265 3l6b_A Serine racemase; pyrido 34.6 1.1E+02 0.0039 21.2 6.7 65 64-128 54-121 (346)
266 1rzw_A Protein AF2095(GR4); be 34.6 73 0.0025 18.9 4.7 34 80-113 46-79 (123)
267 2v6i_A RNA helicase; membrane, 34.2 49 0.0017 23.7 4.0 35 81-117 30-64 (431)
268 1aba_A Glutaredoxin; electron 34.1 55 0.0019 17.3 5.3 23 91-113 13-35 (87)
269 3l6u_A ABC-type sugar transpor 33.6 99 0.0034 20.1 6.9 38 81-118 64-101 (293)
270 2rkb_A Serine dehydratase-like 33.6 1.1E+02 0.0039 20.8 7.1 64 64-128 36-99 (318)
271 2y7e_A 3-keto-5-aminohexanoate 33.4 42 0.0014 23.0 3.4 25 86-110 123-147 (282)
272 3i5x_A ATP-dependent RNA helic 32.8 1.5E+02 0.005 21.8 6.8 40 83-122 147-194 (563)
273 3gr0_A Protein PRGH; type III 32.6 62 0.0021 21.0 3.9 21 84-104 28-48 (197)
274 3rc3_A ATP-dependent RNA helic 32.3 54 0.0018 25.4 4.1 35 83-117 180-214 (677)
275 2zv3_A PTH, peptidyl-tRNA hydr 32.0 77 0.0026 18.4 4.6 32 81-112 48-79 (115)
276 3mwd_B ATP-citrate synthase; A 32.0 68 0.0023 22.5 4.3 107 10-123 7-122 (334)
277 4a4z_A Antiviral helicase SKI2 31.3 69 0.0023 26.0 4.7 38 81-118 81-120 (997)
278 1f4p_A Flavodoxin; electron tr 31.3 45 0.0015 19.6 3.0 23 90-112 13-35 (147)
279 3no5_A Uncharacterized protein 31.2 43 0.0015 22.9 3.1 25 86-110 118-142 (275)
280 4b3f_X DNA-binding protein smu 31.0 1.1E+02 0.0037 23.3 5.6 49 64-113 216-264 (646)
281 3tbh_A O-acetyl serine sulfhyd 30.8 1.3E+02 0.0045 20.7 7.3 65 64-128 49-117 (334)
282 2zj8_A DNA helicase, putative 30.8 46 0.0016 25.6 3.6 49 71-120 58-109 (720)
283 3l9o_A ATP-dependent RNA helic 30.8 91 0.0031 25.7 5.4 38 81-118 226-263 (1108)
284 1wn2_A Peptidyl-tRNA hydrolase 30.5 85 0.0029 18.4 5.0 32 81-112 54-85 (121)
285 2p6r_A Afuhel308 helicase; pro 30.3 64 0.0022 24.7 4.3 48 71-120 59-109 (702)
286 1tdj_A Biosynthetic threonine 30.2 1.4E+02 0.0047 22.4 5.9 63 66-128 62-124 (514)
287 3obe_A Sugar phosphate isomera 30.2 75 0.0026 21.4 4.3 13 103-115 124-136 (305)
288 3miz_A Putative transcriptiona 30.0 59 0.002 21.4 3.7 37 68-108 186-222 (301)
289 3hjh_A Transcription-repair-co 29.8 1.3E+02 0.0045 22.2 5.7 47 55-105 16-62 (483)
290 3c6c_A 3-keto-5-aminohexanoate 29.5 45 0.0015 23.3 3.0 27 84-110 158-184 (316)
291 1uta_A FTSN, MSGA, cell divisi 29.3 54 0.0018 17.4 2.8 17 92-108 20-36 (81)
292 1rlk_A Hypothetical protein TA 29.3 88 0.003 18.2 4.6 34 80-113 49-82 (117)
293 3h8q_A Thioredoxin reductase 3 29.2 80 0.0027 17.8 3.8 35 82-116 16-51 (114)
294 1jr5_A 10 kDa anti-sigma facto 29.1 27 0.00091 19.6 1.5 33 97-129 32-74 (90)
295 1x60_A Sporulation-specific N- 29.1 45 0.0016 17.5 2.5 20 92-111 56-75 (79)
296 3pey_A ATP-dependent RNA helic 29.0 1.4E+02 0.0047 20.3 6.0 53 65-117 56-114 (395)
297 3gon_A Phosphomevalonate kinas 28.7 72 0.0025 21.5 4.0 28 83-110 297-324 (335)
298 2vl7_A XPD; helicase, unknown 28.2 62 0.0021 24.0 3.8 34 82-115 51-84 (540)
299 1p5j_A L-serine dehydratase; l 28.2 1.6E+02 0.0054 20.7 7.1 64 64-128 75-138 (372)
300 2d59_A Hypothetical protein PH 28.2 92 0.0032 18.5 4.0 24 85-109 104-127 (144)
301 2gn0_A Threonine dehydratase c 28.2 58 0.002 22.6 3.5 65 64-128 69-133 (342)
302 3qua_A Putative uncharacterize 28.1 89 0.003 20.2 4.1 28 82-109 22-56 (199)
303 1xty_A PTH, peptidyl-tRNA hydr 28.1 95 0.0032 18.2 5.0 33 80-112 52-84 (120)
304 3gv0_A Transcriptional regulat 27.8 94 0.0032 20.3 4.4 29 80-108 185-213 (288)
305 3msz_A Glutaredoxin 1; alpha-b 27.8 70 0.0024 16.5 5.3 27 84-110 5-32 (89)
306 3g85_A Transcriptional regulat 27.6 91 0.0031 20.3 4.3 29 80-108 185-213 (289)
307 3cs3_A Sugar-binding transcrip 27.6 99 0.0034 20.0 4.5 28 81-108 175-202 (277)
308 3sqw_A ATP-dependent RNA helic 27.5 1.9E+02 0.0065 21.4 7.4 41 83-123 96-144 (579)
309 1ykg_A SIR-FP, sulfite reducta 27.5 42 0.0015 20.5 2.4 20 90-109 22-41 (167)
310 3k9c_A Transcriptional regulat 27.5 1.1E+02 0.0036 20.1 4.6 29 80-108 182-210 (289)
311 2cq9_A GLRX2 protein, glutared 27.4 95 0.0032 18.0 4.8 34 84-117 28-62 (130)
312 2j48_A Two-component sensor ki 27.4 76 0.0026 16.9 4.2 24 95-118 34-57 (119)
313 1bvy_F Protein (cytochrome P45 27.3 48 0.0016 21.0 2.7 22 90-111 34-55 (191)
314 3ngf_A AP endonuclease, family 27.3 1.1E+02 0.0036 20.0 4.6 27 89-115 44-70 (269)
315 3qk7_A Transcriptional regulat 27.0 61 0.0021 21.4 3.4 37 68-108 176-212 (294)
316 3chv_A Prokaryotic domain of u 26.7 49 0.0017 22.7 2.8 26 85-110 121-146 (284)
317 3rhb_A ATGRXC5, glutaredoxin-C 26.7 88 0.003 17.4 3.8 30 84-113 20-50 (113)
318 1tzj_A ACC deaminase, 1-aminoc 26.6 1.6E+02 0.0053 20.2 5.5 53 63-116 48-102 (338)
319 2q3b_A Cysteine synthase A; py 26.6 1.5E+02 0.0052 20.0 7.0 65 64-128 45-112 (313)
320 4dik_A Flavoprotein; TM0755, e 26.1 58 0.002 23.4 3.2 30 83-112 266-300 (410)
321 3k4h_A Putative transcriptiona 25.8 75 0.0026 20.7 3.6 29 80-108 189-217 (292)
322 3pc3_A CG1753, isoform A; CBS, 25.7 1.5E+02 0.005 22.0 5.4 47 82-128 112-158 (527)
323 3e02_A Uncharacterized protein 25.6 59 0.002 22.6 3.0 27 84-110 144-170 (311)
324 3jux_A Protein translocase sub 25.6 1.7E+02 0.006 23.4 5.8 42 70-114 107-152 (822)
325 4b4t_W RPN10, 26S proteasome r 25.5 82 0.0028 21.4 3.7 31 83-113 108-143 (268)
326 3ju3_A Probable 2-oxoacid ferr 25.2 89 0.003 18.0 3.4 26 90-115 23-48 (118)
327 2e0n_A Precorrin-2 C20-methylt 25.1 74 0.0025 21.0 3.4 30 83-112 173-202 (259)
328 1b4b_A Arginine repressor; cor 24.8 83 0.0028 16.5 3.0 24 81-104 46-69 (71)
329 1o58_A O-acetylserine sulfhydr 24.7 1.6E+02 0.0056 19.8 6.4 65 64-128 45-110 (303)
330 1j0a_A 1-aminocyclopropane-1-c 24.6 1.7E+02 0.0058 19.9 7.0 65 63-128 51-118 (325)
331 1y7l_A O-acetylserine sulfhydr 24.4 1.7E+02 0.0058 19.8 6.6 65 64-128 40-107 (316)
332 1vp8_A Hypothetical protein AF 24.4 1.5E+02 0.0052 19.3 5.3 46 81-126 43-96 (201)
333 3m9w_A D-xylose-binding peripl 24.2 1.6E+02 0.0054 19.4 6.6 17 98-114 75-91 (313)
334 3vc3_A Beta-cyanoalnine syntha 24.1 1.8E+02 0.0063 20.1 7.0 47 83-129 87-133 (344)
335 3iau_A Threonine deaminase; py 24.1 93 0.0032 21.8 3.9 46 83-128 108-153 (366)
336 1xxa_A ARGR, arginine represso 24.0 92 0.0032 16.7 3.4 25 81-105 49-73 (78)
337 4d9i_A Diaminopropionate ammon 23.8 2E+02 0.0067 20.4 6.0 48 82-129 110-158 (398)
338 3bbl_A Regulatory protein of L 23.8 1.1E+02 0.0036 20.0 4.1 28 81-108 185-213 (287)
339 4az3_B Lysosomal protective pr 23.5 83 0.0028 19.1 3.2 20 98-117 55-74 (155)
340 2h0a_A TTHA0807, transcription 23.5 1E+02 0.0034 19.8 3.9 28 81-108 178-205 (276)
341 2fep_A Catabolite control prot 23.5 90 0.0031 20.5 3.6 28 81-108 193-220 (289)
342 1iuk_A Hypothetical protein TT 23.1 51 0.0018 19.7 2.2 51 53-109 70-120 (140)
343 2zfz_A Arginine repressor; DNA 23.1 97 0.0033 16.6 3.4 24 81-104 54-77 (79)
344 3e49_A Uncharacterized protein 23.0 70 0.0024 22.2 3.0 26 85-110 145-170 (311)
345 1y9j_A SEC1 family domain cont 23.0 1.2E+02 0.0041 18.8 3.8 26 83-108 93-119 (159)
346 3egc_A Putative ribose operon 22.8 93 0.0032 20.3 3.6 28 81-108 184-211 (291)
347 3d8u_A PURR transcriptional re 22.8 1.6E+02 0.0054 18.9 5.1 28 81-108 179-206 (275)
348 3lfu_A DNA helicase II; SF1 he 22.8 2E+02 0.0067 21.5 5.7 58 57-114 26-92 (647)
349 3kke_A LACI family transcripti 22.7 98 0.0033 20.4 3.7 29 80-108 194-222 (303)
350 3dbi_A Sugar-binding transcrip 22.5 1.3E+02 0.0043 20.3 4.3 28 81-108 240-267 (338)
351 1rw1_A Conserved hypothetical 22.4 1.2E+02 0.004 17.2 4.0 26 86-111 3-29 (114)
352 2hze_A Glutaredoxin-1; thiored 22.4 1.1E+02 0.0038 17.0 4.2 15 98-112 67-81 (114)
353 1v71_A Serine racemase, hypoth 22.4 78 0.0027 21.7 3.2 64 65-128 56-119 (323)
354 3dmq_A RNA polymerase-associat 22.1 77 0.0026 25.6 3.5 39 80-118 198-236 (968)
355 2v03_A Cysteine synthase B; py 22.0 1.9E+02 0.0065 19.5 7.3 65 64-128 39-106 (303)
356 3upu_A ATP-dependent DNA helic 21.6 1.3E+02 0.0046 21.6 4.5 48 64-114 56-103 (459)
357 3m95_A Autophagy related prote 21.6 1.4E+02 0.0047 17.8 8.3 64 52-115 50-120 (125)
358 3h5t_A Transcriptional regulat 21.5 1.2E+02 0.0042 20.6 4.1 36 69-108 258-293 (366)
359 2kok_A Arsenate reductase; bru 21.3 1.3E+02 0.0043 17.2 3.7 29 84-112 6-35 (120)
360 2pg9_A Phosphomevalonate kinas 21.1 1.4E+02 0.0048 20.6 4.3 31 83-113 299-329 (337)
361 4h27_A L-serine dehydratase/L- 21.0 2.2E+02 0.0075 19.9 6.8 64 64-128 75-138 (364)
362 3crv_A XPD/RAD3 related DNA he 20.9 1.3E+02 0.0046 22.3 4.4 34 82-115 47-84 (551)
363 1vhf_A Periplasmic divalent ca 20.8 1.1E+02 0.0039 17.8 3.2 24 85-108 4-29 (113)
364 1v9f_A Ribosomal large subunit 20.8 1.5E+02 0.0051 20.4 4.4 36 83-118 142-180 (325)
365 3d3k_A Enhancer of mRNA-decapp 20.7 1.1E+02 0.0039 20.4 3.6 31 83-113 86-119 (259)
366 1qpz_A PURA, protein (purine n 20.7 1.1E+02 0.0036 20.7 3.6 28 81-108 236-263 (340)
367 3nzn_A Glutaredoxin; structura 20.6 1.2E+02 0.004 16.6 5.1 9 106-114 77-85 (103)
368 3c3k_A Alanine racemase; struc 20.6 1.1E+02 0.0038 19.9 3.6 28 81-108 182-209 (285)
369 2ht9_A Glutaredoxin-2; thiored 20.6 1.4E+02 0.0048 17.8 3.8 32 84-115 50-82 (146)
370 2owl_A Recombination-associate 20.6 1.2E+02 0.0043 20.9 3.9 41 81-121 133-175 (303)
371 1c4o_A DNA nucleotide excision 20.5 2.9E+02 0.01 21.1 6.3 46 56-105 31-76 (664)
372 1uku_A CUTA1, periplasmic diva 20.5 1.2E+02 0.0041 17.3 3.2 22 87-108 6-27 (102)
373 3kjx_A Transcriptional regulat 20.5 1.5E+02 0.0051 20.0 4.4 37 68-108 236-272 (344)
374 1dbq_A Purine repressor; trans 20.4 1.1E+02 0.0038 19.8 3.6 28 81-108 185-212 (289)
375 3e3m_A Transcriptional regulat 20.2 1.5E+02 0.0051 20.1 4.3 37 68-108 239-275 (355)
376 2nuh_A Periplasmic divalent ca 20.1 1.2E+02 0.004 17.9 3.2 24 84-107 5-30 (118)
377 4es6_A Uroporphyrinogen-III sy 20.1 1.2E+02 0.0041 19.7 3.7 27 83-109 6-32 (254)
378 3h5o_A Transcriptional regulat 20.1 1.4E+02 0.0046 20.2 4.1 37 68-108 228-264 (339)
379 3dhx_A Methionine import ATP-b 20.0 30 0.001 19.7 0.6 31 88-118 28-58 (106)
380 1o5j_A Periplasmic divalent ca 20.0 1.2E+02 0.0041 17.7 3.2 27 81-107 10-38 (113)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.84 E-value=6.7e-20 Score=133.95 Aligned_cols=113 Identities=33% Similarity=0.581 Sum_probs=103.2
Q ss_pred CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEec
Q psy9627 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAE 90 (129)
Q Consensus 11 ~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~n 90 (129)
++.+|+++||||+|+.+.+++..++.++..+.++... ....++.|.++.+....|...|..++... ..++||||+
T Consensus 234 ~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~~l~~~----~~~~lVF~~ 308 (434)
T 2db3_A 234 RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKYAKRSKLIEILSEQ----ADGTIVFVE 308 (434)
T ss_dssp CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEEECCGGGHHHHHHHHHHHC----CTTEEEECS
T ss_pred CCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEEEeCcHHHHHHHHHHHHhC----CCCEEEEEe
Confidence 6789999999999999999999999999999888766 56678999999999999999999888863 345999999
Q ss_pred ccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 91 TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 91 t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
|++.|+.+++.|...|+++..+||++++.+|.++++.|
T Consensus 309 t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F 346 (434)
T 2db3_A 309 TKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDF 346 (434)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.76 E-value=4.8e-18 Score=122.56 Aligned_cols=120 Identities=28% Similarity=0.411 Sum_probs=104.9
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccc-hHHHHHHHHHhhhcCCCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHE-KENKLFGLLNDISSKDEN 83 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~ 83 (129)
.+++.+++.+|++++|||+++.+.++...++.+|..+.+.... ....++.+.+..++... |...+..+++.. ..+
T Consensus 202 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~---~~~ 277 (410)
T 2j0s_A 202 DVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE-LTLEGIKQFFVAVEREEWKFDTLCDLYDTL---TIT 277 (410)
T ss_dssp HHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG-CSCTTEEEEEEEESSTTHHHHHHHHHHHHH---TSS
T ss_pred HHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc-ccCCCceEEEEEeCcHHhHHHHHHHHHHhc---CCC
Confidence 4667778889999999999999999988999999888776655 45678889888887755 888888888864 467
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++||||++++.++.+++.|...|+++..+||+|++.+|..+++.|
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 322 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEF 322 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.76 E-value=9.7e-18 Score=121.04 Aligned_cols=113 Identities=39% Similarity=0.620 Sum_probs=99.8
Q ss_pred CceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEeccc
Q psy9627 13 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETK 92 (129)
Q Consensus 13 ~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~ 92 (129)
.+|++++|||+++.+..+...++.++..+.+.... ....++.+.++.++..+|...+.++++.. ...+++||||+++
T Consensus 210 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~lVf~~~~ 286 (417)
T 2i4i_A 210 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNAT--GKDSLTLVFVETK 286 (417)
T ss_dssp TBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CCSSEEEEEEECCGGGHHHHHHHHHHTC--CTTCEEEEECSSH
T ss_pred CcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCccCceEEEEEeccHhHHHHHHHHHHhc--CCCCeEEEEECCH
Confidence 68999999999999999999999999888887665 56688999999999999999999988863 3567999999999
Q ss_pred ccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 93 RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 93 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+.++.+++.|+..|+.+..+||+|++.+|.++++.|
T Consensus 287 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 322 (417)
T 2i4i_A 287 KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 322 (417)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999876
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.76 E-value=2.2e-17 Score=118.19 Aligned_cols=121 Identities=24% Similarity=0.348 Sum_probs=106.9
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCc
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENK 84 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 84 (129)
.++...++.+|++++|||+++.+...+..++.+|..+.+..........+.+.+..++...|...+..+++.. ..++
T Consensus 176 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~ 252 (391)
T 1xti_A 176 EIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL---EFNQ 252 (391)
T ss_dssp HHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHS---CCSE
T ss_pred HHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhc---CCCc
Confidence 4556667889999999999999999999999999888877655345578889999999999999998888863 6789
Q ss_pred EEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 85 TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+||||++++.++.+++.|...|+++..+||+|++.+|..+++.|
T Consensus 253 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 296 (391)
T 1xti_A 253 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 296 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876
No 5
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.74 E-value=3.9e-17 Score=117.53 Aligned_cols=120 Identities=20% Similarity=0.271 Sum_probs=104.9
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-cchHHHHHHHHHhhhcCCCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~ 83 (129)
.+...+++..|++++|||++..+..+...++.++..+.+.... .....+.+.++.+.. ..|...+..++... ..+
T Consensus 192 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 267 (412)
T 3fht_A 192 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSSRDEKFQALCNLYGAI---TIA 267 (412)
T ss_dssp HHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGG-SSCTTEEEEEEECSSHHHHHHHHHHHHHHH---SSS
T ss_pred HHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccc-ccccCceEEEEEcCChHHHHHHHHHHHhhc---CCC
Confidence 3555667889999999999999999999999999988877665 566788888888766 56888888888763 568
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|
T Consensus 268 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 312 (412)
T 3fht_A 268 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 312 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=118.57 Aligned_cols=121 Identities=26% Similarity=0.370 Sum_probs=103.0
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccc-hHHHHHHHHHhhhcCCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHE-KENKLFGLLNDISSKDE 82 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~ 82 (129)
..++..+++..|++++|||++..+.+....++.++..+.+.... .....+.+.++.+...+ |...+..+++. ...
T Consensus 205 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~ 280 (414)
T 3eiq_A 205 YDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE-LTLEGIRQFYINVEREEWKLDTLCDLYET---LTI 280 (414)
T ss_dssp HHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCC-CCTTSCCEEEEECSSSTTHHHHHHHHHHS---SCC
T ss_pred HHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCc-cCCCCceEEEEEeChHHhHHHHHHHHHHh---CCC
Confidence 45677788899999999999999999999999999888877666 55678888888877644 88888888875 356
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f 326 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREF 326 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999876
No 7
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.72 E-value=2e-16 Score=113.72 Aligned_cols=119 Identities=26% Similarity=0.330 Sum_probs=103.7
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCc
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENK 84 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 84 (129)
.++..+++..|++++|||+|..+.+.+...+.+|..+.+... ....++.+++..++...|...+..+++. ...++
T Consensus 186 ~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~~~---~~~~~ 260 (400)
T 1s2m_A 186 QILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFSK---LQINQ 260 (400)
T ss_dssp HHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHHHH---SCCSE
T ss_pred HHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHHhh---cCCCc
Confidence 455667788999999999999999999999988877766543 3456788888888888999888888876 35689
Q ss_pred EEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 85 TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+||||++++.++.+++.|+..|+.+..+||+|++.+|..+++.|
T Consensus 261 ~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 304 (400)
T 1s2m_A 261 AIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEF 304 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876
No 8
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.71 E-value=7.2e-18 Score=124.26 Aligned_cols=120 Identities=19% Similarity=0.254 Sum_probs=36.1
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-cchHHHHHHHHHhhhcCCCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~ 83 (129)
.+.+.+++.+|++++|||++..+..++..++.+|..+.+.... .....+.|.++.+.. ..|...|..++.. ...+
T Consensus 259 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~ 334 (479)
T 3fmp_B 259 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSSRDEKFQALCNLYGA---ITIA 334 (479)
T ss_dssp HHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------------------
T ss_pred HHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccc-cCcCCceEEEEEeCCHHHHHHHHHHHHhh---ccCC
Confidence 4566778889999999999999999999999999999888766 566788888888876 5677777777765 3567
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++||||++++.|+.+++.|...|+.+..+||+|++.+|..+++.|
T Consensus 335 ~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f 379 (479)
T 3fmp_B 335 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 379 (479)
T ss_dssp ---------------------------------------------
T ss_pred ceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.70 E-value=2.4e-16 Score=112.65 Aligned_cols=120 Identities=22% Similarity=0.286 Sum_probs=102.1
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-cchHHHHHHHHHhhhcCCCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~ 83 (129)
.+...+++..|++++|||+++.+..+...++.++..+...... .....+.+.+..+.. ..|...+..++.. ...+
T Consensus 169 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~ 244 (395)
T 3pey_A 169 RVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNE-VNVDAIKQLYMDCKNEADKFDVLTELYGL---MTIG 244 (395)
T ss_dssp HHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGG-CSCTTEEEEEEECSSHHHHHHHHHHHHTT---TTSS
T ss_pred HHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccc-cccccccEEEEEcCchHHHHHHHHHHHHh---ccCC
Confidence 3556677889999999999999999999999988887776655 455778888887755 5677777777765 3568
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++||||++++.++.+++.|+..|+.+..+||+|++.+|.++++.|
T Consensus 245 ~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 289 (395)
T 3pey_A 245 SSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDF 289 (395)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876
No 10
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=104.34 Aligned_cols=92 Identities=29% Similarity=0.307 Sum_probs=68.3
Q ss_pred HHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEE
Q psy9627 32 EDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVG 111 (129)
Q Consensus 32 ~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~ 111 (129)
..++++|..|.++... ....+++|.++.++..+|...|..++.. ..+++||||++++.++.+++.|+..|+++..
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~----~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQK----TPPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTT----SCSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHh----CCCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 4578899999998776 6778999999999999999999888875 3568999999999999999999999999999
Q ss_pred ecCCCChhHHHHHHhcC
Q psy9627 112 IHGDKSQQERDYVLKVG 128 (129)
Q Consensus 112 lhg~~~~~~R~~~l~~~ 128 (129)
+||+|++.+|.++++.|
T Consensus 84 lhg~~~~~~R~~~l~~F 100 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAF 100 (191)
T ss_dssp ECTTSCHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHH
Confidence 99999999999999876
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.67 E-value=1.7e-15 Score=107.23 Aligned_cols=115 Identities=31% Similarity=0.494 Sum_probs=99.2
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCc
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENK 84 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 84 (129)
.++..+++..|++++|||++..+.+....++.++..+.... ..++.+.++.+...+|...+..+++ ....+
T Consensus 170 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~ 240 (367)
T 1hv8_A 170 KILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALCRLLK----NKEFY 240 (367)
T ss_dssp HHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHHHHHC----STTCC
T ss_pred HHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHHHHHh----cCCCc
Confidence 45556678899999999999999999999888876665443 2477888888888899888887776 36789
Q ss_pred EEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 85 TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+||||++++.++.+++.|+..|+++..+||++++.+|.++++.|
T Consensus 241 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 284 (367)
T 1hv8_A 241 GLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLF 284 (367)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.65 E-value=8.3e-17 Score=115.18 Aligned_cols=120 Identities=28% Similarity=0.380 Sum_probs=35.9
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccc-hHHHHHHHHHhhhcCCCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHE-KENKLFGLLNDISSKDEN 83 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~ 83 (129)
.++..+++..|++++|||+++.+.+....++.+|..+.+.... ....++.+.+..++..+ |...+..+++.. ..+
T Consensus 185 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 260 (394)
T 1fuu_A 185 QIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE-LTLEGIKQFYVNVEEEEYKYECLTDLYDSI---SVT 260 (394)
T ss_dssp HHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------------------
T ss_pred HHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcc-ccCCCceEEEEEcCchhhHHHHHHHHHhcC---CCC
Confidence 4566677889999999999999999999999999988887665 45567788877776654 777777777653 567
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++||||++++.++.+++.|+..|+.+..+||+|++.+|..+++.|
T Consensus 261 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 305 (394)
T 1fuu_A 261 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF 305 (394)
T ss_dssp ---------------------------------------------
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887
No 13
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.59 E-value=1.6e-14 Score=109.22 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=86.0
Q ss_pred ccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc--cchHHHHHHHHHhhhcCCCCcE
Q psy9627 8 MTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE--HEKENKLFGLLNDISSKDENKT 85 (129)
Q Consensus 8 ~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~--~~k~~~L~~ll~~~~~~~~~~~ 85 (129)
....+..|++++|||+++.+.+.+...+..+..+.+... ...+++...+...+. .++...+..+++.. ...+++
T Consensus 195 ~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~--~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~--~~~~~~ 270 (591)
T 2v1x_A 195 KRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS--FNRPNLYYEVRQKPSNTEDFIEDIVKLINGR--YKGQSG 270 (591)
T ss_dssp HHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC--CCCTTEEEEEEECCSSHHHHHHHHHHHHTTT--TTTCEE
T ss_pred HHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC--CCCcccEEEEEeCCCcHHHHHHHHHHHHHHh--ccCCCe
Confidence 333567899999999999999888888775433332222 123455544444332 23445555555432 256899
Q ss_pred EEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 86 IIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 86 iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
||||+|++.++.+++.|+..|+.+..+||+|++.+|..++++|
T Consensus 271 IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F 313 (591)
T 2v1x_A 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKW 313 (591)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876
No 14
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.59 E-value=1.3e-15 Score=113.31 Aligned_cols=120 Identities=22% Similarity=0.316 Sum_probs=91.8
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-cchHHHHHHHHHhhhcCCCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~ 83 (129)
.+...+++..|++++|||+++.++.+...++.++..+.+.... .....+.+.+..+.. ..|...+..+++. ...+
T Consensus 283 ~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~ll~~---~~~~ 358 (508)
T 3fho_A 283 RIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEE-LSVEGIKQLYMDCQSEEHKYNVLVELYGL---LTIG 358 (508)
T ss_dssp HHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHHHHHHHHHHHC------CC
T ss_pred HHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEecccc-CCcccceEEEEECCchHHHHHHHHHHHHh---cCCC
Confidence 4566678889999999999999999999999998888777665 455677788777755 5577777777765 3568
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++||||++++.|+.+++.|...|+.+..+||+|++.+|..+++.|
T Consensus 359 ~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f 403 (508)
T 3fho_A 359 QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSF 403 (508)
T ss_dssp CEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHH
T ss_pred cEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888776
No 15
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=1.3e-14 Score=109.29 Aligned_cols=118 Identities=22% Similarity=0.287 Sum_probs=89.8
Q ss_pred CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCC---CcccCCCceEEEEEcCcc-chH-HHHHHHHHhhhc-CCCCc
Q psy9627 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL---TLSANHNIQQVVEVCAEH-EKE-NKLFGLLNDISS-KDENK 84 (129)
Q Consensus 11 ~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~---~~~~~~~i~~~~~~~~~~-~k~-~~L~~ll~~~~~-~~~~~ 84 (129)
++.+|+++||||+++.+.+++..++.++..+.+... .......+.+.+..++.. .+. ..+..+.+.+.. ....+
T Consensus 211 ~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 290 (579)
T 3sqw_A 211 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYK 290 (579)
T ss_dssp TTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCE
T ss_pred ccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCc
Confidence 347799999999999999999999988776654322 223456777877777653 333 223333332221 35679
Q ss_pred EEEEecccccHHHHHHHHHhc---CceEEEecCCCChhHHHHHHhcC
Q psy9627 85 TIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+||||+|++.|+.+++.|+.. |+++..+||+|++.+|..+++.|
T Consensus 291 ~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F 337 (579)
T 3sqw_A 291 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 337 (579)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHh
Confidence 999999999999999999887 99999999999999999999876
No 16
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.58 E-value=9.7e-15 Score=94.60 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=68.9
Q ss_pred CCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 51 NHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 51 ~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+.+++|+++.++..+|...|..+++.. ..+++||||++++.++.+++.|...|+++..+||+|++.+|..+++.|
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f 77 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 77 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHH
Confidence 468999999999999999999999863 568999999999999999999999999999999999999999999876
No 17
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.58 E-value=2.7e-14 Score=107.01 Aligned_cols=118 Identities=22% Similarity=0.279 Sum_probs=89.4
Q ss_pred CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCC---CcccCCCceEEEEEcCcc-chHHH-HHHHHHhhhc-CCCCc
Q psy9627 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL---TLSANHNIQQVVEVCAEH-EKENK-LFGLLNDISS-KDENK 84 (129)
Q Consensus 11 ~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~---~~~~~~~i~~~~~~~~~~-~k~~~-L~~ll~~~~~-~~~~~ 84 (129)
++..|+++||||+|+.+.+++..++.++..+.+... .......+.+.+..++.. .+... +..+.+.+.. ....+
T Consensus 262 ~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 341 (563)
T 3i5x_A 262 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYK 341 (563)
T ss_dssp TTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCE
T ss_pred ccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCc
Confidence 447899999999999999999999988766654322 123456677777776652 33332 2233332221 35679
Q ss_pred EEEEecccccHHHHHHHHHhc---CceEEEecCCCChhHHHHHHhcC
Q psy9627 85 TIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+||||+|++.|+.+++.|... ++++..+||+|++.+|..+++.|
T Consensus 342 ~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f 388 (563)
T 3i5x_A 342 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 388 (563)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHH
T ss_pred EEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Confidence 999999999999999999886 99999999999999999999876
No 18
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.57 E-value=1.7e-14 Score=92.56 Aligned_cols=77 Identities=27% Similarity=0.366 Sum_probs=70.7
Q ss_pred ccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 49 SANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 49 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
...++++|.++.++.++|...|..+++.. ..+++||||++++.++.+++.|...|+++..+||+|++.+|..+++.|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f 81 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEF 81 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 34578999999999999999999999863 568999999999999999999999999999999999999999999876
No 19
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=92.61 Aligned_cols=76 Identities=20% Similarity=0.315 Sum_probs=69.5
Q ss_pred cCCCceEEEEEcCccc-hHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 50 ANHNIQQVVEVCAEHE-KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 50 ~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++++++|+|+.++..+ |...|..+++. ...+++||||++++.++.+++.|...|+++..+||+|++.+|..++++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~---~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGS---ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTT---SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHh---CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 4579999999999865 99999998886 3568999999999999999999999999999999999999999999876
No 20
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.52 E-value=2.7e-14 Score=93.57 Aligned_cols=78 Identities=35% Similarity=0.506 Sum_probs=63.1
Q ss_pred ccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 49 SANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 49 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..+++++|.++.++..+|...|..+++.. .+..++||||++++.++.+++.|+..|+++..+||+|++.+|..+++.|
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 46689999999999999999999999873 2568999999999999999999999999999999999999999999876
No 21
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.52 E-value=5.8e-14 Score=90.23 Aligned_cols=74 Identities=32% Similarity=0.438 Sum_probs=67.2
Q ss_pred CCceEEEEEcCccc-hHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 52 HNIQQVVEVCAEHE-KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 52 ~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++++|+|+.++..+ |...|..+++.. ..+++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 76 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF 76 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence 57899999999877 999999999873 568999999999999999999999999999999999999999999876
No 22
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.49 E-value=3.8e-13 Score=100.48 Aligned_cols=108 Identities=18% Similarity=0.241 Sum_probs=82.9
Q ss_pred CCceEEEEEecCcHHHHHHHHHhc--cCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEe
Q psy9627 12 PDRQVLMWSATWPREVQKLAEDFL--DSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFA 89 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~~~--~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~ 89 (129)
+..|++++|||.++.+.+.+...+ .+|..+ +.... .+++.. ...+..++...+..+++. ....++||||
T Consensus 173 ~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~---r~~l~~--~v~~~~~~~~~l~~~l~~---~~~~~~IVf~ 243 (523)
T 1oyw_A 173 PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD---RPNIRY--MLMEKFKPLDQLMRYVQE---QRGKSGIIYC 243 (523)
T ss_dssp TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCCC---CTTEEE--EEEECSSHHHHHHHHHHH---TTTCCEEEEC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCCC---CCceEE--EEEeCCCHHHHHHHHHHh---cCCCcEEEEe
Confidence 468999999999998876555544 345433 33222 245543 334456677777777765 3567999999
Q ss_pred cccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+|++.++.+++.|+..|+++..+||+|++.+|.+++++|
T Consensus 244 ~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f 282 (523)
T 1oyw_A 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKF 282 (523)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.43 E-value=1.1e-12 Score=91.94 Aligned_cols=111 Identities=20% Similarity=0.331 Sum_probs=88.0
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCc
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENK 84 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 84 (129)
.++...+...|++++|||+++.+.+.+..++.++..+... ....++.+.++.++...+.. ...+.. ...++
T Consensus 152 ~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~ 222 (337)
T 2z0m_A 152 IILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWRSK--VQALRE---NKDKG 222 (337)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSHHH--HHHHHT---CCCSS
T ss_pred HHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHHHH--HHHHHh---CCCCc
Confidence 4556667788999999999999999999999887766443 23356778888777655432 233432 46789
Q ss_pred EEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 85 TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+||||++++.++.+++.|. .+..+||++++.+|.++++.|
T Consensus 223 ~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f 262 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAF 262 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHH
Confidence 9999999999999999986 678999999999999999876
No 24
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.39 E-value=1.6e-12 Score=90.99 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=68.2
Q ss_pred CceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 53 NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 53 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.++|+++.++..+|...|..+++.. ..+++||||+|++.++.+++.|...|+.+..+||+|++.+|..+++.|
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~---~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f 74 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAF 74 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhc---CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 4789999999999999999999864 578999999999999999999999999999999999999999999876
No 25
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.37 E-value=1.7e-12 Score=86.58 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=67.4
Q ss_pred CceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 53 NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 53 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+.+.++.++...|...|..+++.. ..+++||||++++.++.+++.|...|+++..+||+|++.+|..+++.|
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f 77 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAF 77 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHH---CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHH
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence 4678888899999999999999863 578999999999999999999999999999999999999999999876
No 26
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.37 E-value=1.9e-12 Score=100.62 Aligned_cols=111 Identities=9% Similarity=0.185 Sum_probs=81.4
Q ss_pred CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHH-HhhhcCCCCcEEEEe
Q psy9627 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLL-NDISSKDENKTIIFA 89 (129)
Q Consensus 11 ~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll-~~~~~~~~~~~iVF~ 89 (129)
.++.|++++|||++. +. +..++.++..+.+.... ..++++|...+..++.......+ +.......+++||||
T Consensus 238 ~~~~~iIl~SAT~~~--~~-l~~~~~~~~vi~v~gr~----~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~ 310 (773)
T 2xau_A 238 RPDLKIIIMSATLDA--EK-FQRYFNDAPLLAVPGRT----YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFL 310 (773)
T ss_dssp CTTCEEEEEESCSCC--HH-HHHHTTSCCEEECCCCC----CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEEC
T ss_pred CCCceEEEEeccccH--HH-HHHHhcCCCcccccCcc----cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 457899999999964 23 34456655556655433 34677777666666554433333 322224578999999
Q ss_pred cccccHHHHHHHHHh-----------cCceEEEecCCCChhHHHHHHhcC
Q psy9627 90 ETKRKVDKITKSIQN-----------YGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 90 nt~~~~~~l~~~L~~-----------~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++++.++.+++.|.. .++.+..+||+|++.+|..+++.|
T Consensus 311 ~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f 360 (773)
T 2xau_A 311 TGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPA 360 (773)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhc
Confidence 999999999999985 588999999999999999999887
No 27
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.05 E-value=6e-14 Score=90.59 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=68.0
Q ss_pred CCceEEEEEcCc-cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 52 HNIQQVVEVCAE-HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 52 ~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++++|.++.++. .+|...|..+++. ...+++||||++++.++.+++.|+..|+++..+||+|++.+|..+++.|
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~---~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f 76 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQ---PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRL 76 (170)
Confidence 478899999998 8899999888875 3568999999999999999999999999999999999999999999887
No 28
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.35 E-value=4.3e-12 Score=101.72 Aligned_cols=123 Identities=13% Similarity=0.171 Sum_probs=85.2
Q ss_pred hhhhhccCCCCceEEEEEecCcHH--HHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCcc---------c------
Q psy9627 3 WASRAMTYKPDRQVLMWSATWPRE--VQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEH---------E------ 65 (129)
Q Consensus 3 ~~~il~~l~~~~Q~ll~SAT~~~~--v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~---------~------ 65 (129)
+.+++..+++..|++++|||+|.. +..++......|..+...... +..++++++..... .
T Consensus 311 ~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~vd~~~~~~~~~ 387 (1108)
T 3l9o_A 311 WEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFREEN 387 (1108)
T ss_dssp HHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC---SSCEEEEEEETTSSCCEEEEETTTEECHHH
T ss_pred HHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC---cccceEEEeecCCcceeeeeccccchhhhh
Confidence 356777889999999999999764 456667777677666555433 12334444322110 0
Q ss_pred ----------------------------------h---HHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 66 ----------------------------------K---ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 66 ----------------------------------k---~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
+ ...+..+++.+...+..++||||++++.|+.++..|...++.
T Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~ 467 (1108)
T 3l9o_A 388 FQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFN 467 (1108)
T ss_dssp HHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCC
Confidence 0 233444554443456679999999999999999998764433
Q ss_pred ---------------------------------------EEEecCCCChhHHHHHHhcC
Q psy9627 109 ---------------------------------------AVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 109 ---------------------------------------~~~lhg~~~~~~R~~~l~~~ 128 (129)
++.+||+|++.+|..+++.|
T Consensus 468 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F 526 (1108)
T 3l9o_A 468 SDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF 526 (1108)
T ss_dssp CC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHH
Confidence 78999999999999999876
No 29
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.27 E-value=1.4e-11 Score=99.09 Aligned_cols=117 Identities=12% Similarity=0.074 Sum_probs=85.5
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN 83 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 83 (129)
.++++.+++..|++++|||.++.........+.++..+...+.. ...+..++.... +......+++.+ ...+
T Consensus 742 ~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~---r~~i~~~~~~~~---~~~i~~~il~~l--~~g~ 813 (1151)
T 2eyq_A 742 KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYD---SMVVREAILREI--LRGG 813 (1151)
T ss_dssp HHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB---CBCEEEEEEECC---HHHHHHHHHHHH--TTTC
T ss_pred HHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC---ccccEEEEecCC---HHHHHHHHHHHH--hcCC
Confidence 34566667788999999998888777776666665554433322 234444444332 223333444444 3568
Q ss_pred cEEEEecccccHHHHHHHHHhc--CceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+++||||+++.++.+++.|+.. ++.+..+||+|++.+|.+++++|
T Consensus 814 qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F 860 (1151)
T 2eyq_A 814 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 860 (1151)
T ss_dssp EEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHH
Confidence 9999999999999999999987 89999999999999999999876
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.26 E-value=4.5e-11 Score=95.17 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=81.1
Q ss_pred hhhhccCCCCceEEEEEecCcHHHH--HHHHHhccCccEEEeCCCCcccCCCceEEEEEcC---------ccc-------
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQ--KLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCA---------EHE------- 65 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~--~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~---------~~~------- 65 (129)
..++..+|+..|++++|||+|...+ +++......+..+...... +..++++++... ...
T Consensus 214 e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1010)
T 2xgj_A 214 EETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFREENF 290 (1010)
T ss_dssp HHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC---SSCEEEEEEETTSSCCEEEECTTCCBCHHHH
T ss_pred HHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC---cccceEEEEecCCcceeeeeccccccchHHH
Confidence 4567778889999999999976432 4444444556665554432 123555544321 000
Q ss_pred ----------------------------h--------HHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce-
Q psy9627 66 ----------------------------K--------ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA- 108 (129)
Q Consensus 66 ----------------------------k--------~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~- 108 (129)
| ...+..+++.+...+..++||||+|++.|+.++..|...++.
T Consensus 291 ~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~ 370 (1010)
T 2xgj_A 291 QKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNS 370 (1010)
T ss_dssp HHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCC
T ss_pred HHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCC
Confidence 1 122333444333235569999999999999999999775542
Q ss_pred --------------------------------------EEEecCCCChhHHHHHHhcC
Q psy9627 109 --------------------------------------AVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 109 --------------------------------------~~~lhg~~~~~~R~~~l~~~ 128 (129)
++.+||+|++.+|..+++.|
T Consensus 371 ~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F 428 (1010)
T 2xgj_A 371 DDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF 428 (1010)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHH
Confidence 78999999999999999876
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.21 E-value=6.5e-12 Score=90.85 Aligned_cols=92 Identities=24% Similarity=0.343 Sum_probs=68.9
Q ss_pred CCceEEEEEec-CcHHHHH-HHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEe
Q psy9627 12 PDRQVLMWSAT-WPREVQK-LAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFA 89 (129)
Q Consensus 12 ~~~Q~ll~SAT-~~~~v~~-~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~ 89 (129)
+.+|++++||| .|..+.. +....+. +.+.... ....++.+.++.+ +|...|..+++.. .+++||||
T Consensus 192 ~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~i~~~~~~~---~~~~~l~~~l~~~----~~~~lVF~ 259 (414)
T 3oiy_A 192 KPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS---RSKEKLVELLEIF----RDGILIFA 259 (414)
T ss_dssp CCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCC-CCCCSEEEEEESS---CCHHHHHHHHHHH----CSSEEEEE
T ss_pred CCceEEEEecCCCcchhHHHHHHHhhc----cCcCccc-cccccchheeecc---CHHHHHHHHHHHc----CCCEEEEE
Confidence 77899999999 6666553 3333322 3333333 4557888888766 4566677777762 48999999
Q ss_pred cccccHHHHHHHHHhcCceEE-EecCC
Q psy9627 90 ETKRKVDKITKSIQNYGWAAV-GIHGD 115 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~-~lhg~ 115 (129)
|+++.|+.+++.|+..|+++. .+||+
T Consensus 260 ~~~~~~~~l~~~L~~~~~~~~~~~h~~ 286 (414)
T 3oiy_A 260 QTEEEGKELYEYLKRFKFNVGETWSEF 286 (414)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEESSSCH
T ss_pred CCHHHHHHHHHHHHHcCCceehhhcCc
Confidence 999999999999999999998 99995
No 32
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.19 E-value=3.3e-10 Score=90.17 Aligned_cols=61 Identities=8% Similarity=0.174 Sum_probs=49.8
Q ss_pred chHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCc-------------------------------------
Q psy9627 65 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW------------------------------------- 107 (129)
Q Consensus 65 ~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~------------------------------------- 107 (129)
.+...+...+.. .+..++||||+|++.|+.++..|...|+
T Consensus 322 ~~~~~li~~l~~---~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l 398 (997)
T 4a4z_A 322 KTWPEIVNYLRK---RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLL 398 (997)
T ss_dssp THHHHHHHHHHH---TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHh---CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHh
Confidence 344455555553 4668999999999999999999987666
Q ss_pred --eEEEecCCCChhHHHHHHhcC
Q psy9627 108 --AAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 108 --~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+..+||+|++.+|..+++.|
T Consensus 399 ~~gi~~~H~gl~~~~R~~v~~~F 421 (997)
T 4a4z_A 399 ERGIAVHHGGLLPIVKELIEILF 421 (997)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHH
T ss_pred hcCeeeecCCCCHHHHHHHHHHH
Confidence 479999999999999999876
No 33
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.18 E-value=2.4e-10 Score=87.56 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=71.2
Q ss_pred CCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecc
Q psy9627 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAET 91 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt 91 (129)
+.+|+++||||.++...... .......+.... ...+. +...+...+...+...+.... ....++||||+|
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~~-l~~p~----i~v~~~~~~~~~Ll~~l~~~~-~~~~~vlVf~~t 454 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DEMVEQIIRPTG-LLDPL----IDVRPIEGQIDDLIGEIQARI-ERNERVLVTTLT 454 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SSCEEECCCTTC-CCCCE----EEEECSTTHHHHHHHHHHHHH-TTTCEEEEECSS
T ss_pred cCCCEEEEecCCChhHHHhh----hCeeeeeecccC-CCCCe----EEEecccchHHHHHHHHHHHH-hcCCeEEEEECC
Confidence 46899999999876543221 111111122111 11111 112233445555555454332 346799999999
Q ss_pred cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 92 KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 92 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++.++.+++.|+..|+++..+||++++.+|.+++++|
T Consensus 455 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f 491 (661)
T 2d7d_A 455 KKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDL 491 (661)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999998875
No 34
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.16 E-value=3e-11 Score=96.86 Aligned_cols=92 Identities=22% Similarity=0.315 Sum_probs=69.7
Q ss_pred CCceEEEEEec-CcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEec
Q psy9627 12 PDRQVLMWSAT-WPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAE 90 (129)
Q Consensus 12 ~~~Q~ll~SAT-~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~n 90 (129)
+.+|+++|||| .|..+...... ++..+.+.... ....++.|.++.+ +|...|..+++.. .+++|||||
T Consensus 249 ~~~q~ll~SAT~~p~~~~~~~~~---~~l~i~v~~~~-~~~~~i~~~~~~~---~k~~~L~~ll~~~----~~~~LVF~~ 317 (1104)
T 4ddu_A 249 KPGILVVSSATAKPRGIRPLLFR---DLLNFTVGRLV-SVARNITHVRISS---RSKEKLVELLEIF----RDGILIFAQ 317 (1104)
T ss_dssp CCCEEEEECBSSCCCSSTTHHHH---HHTCCCCCBCC-CCCCCEEEEEESC---CCHHHHHHHHHHH----CSSEEEEES
T ss_pred CCceEEEEcCCCCcHHHHHHHhh---cceeEEeccCC-CCcCCceeEEEec---CHHHHHHHHHHhc----CCCEEEEEC
Confidence 78899999999 66665533222 12224444333 4567888888876 4666677778763 489999999
Q ss_pred ccccHHHHHHHHHhcCceEE-EecC
Q psy9627 91 TKRKVDKITKSIQNYGWAAV-GIHG 114 (129)
Q Consensus 91 t~~~~~~l~~~L~~~~~~~~-~lhg 114 (129)
|++.|+.+++.|+..|+++. .+||
T Consensus 318 s~~~a~~l~~~L~~~g~~~~~~lhg 342 (1104)
T 4ddu_A 318 TEEEGKELYEYLKRFKFNVGETWSE 342 (1104)
T ss_dssp SSHHHHHHHHHHHHTTCCEEESSSS
T ss_pred cHHHHHHHHHHHHhCCCCeeeEecC
Confidence 99999999999999999998 9999
No 35
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.13 E-value=5.4e-10 Score=85.67 Aligned_cols=107 Identities=16% Similarity=0.079 Sum_probs=70.7
Q ss_pred CCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecc
Q psy9627 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAET 91 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt 91 (129)
..+|+++||||.++..... ........+.... ...+ .+...+...+...+...+.... ....++||||+|
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~-l~~p----~i~v~~~~~~~~~Ll~~l~~~~-~~~~~vlVf~~t 448 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTG-LLDP----LVRVKPTENQILDLMEGIRERA-ARGERTLVTVLT 448 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTC-CCCC----EEEEECSTTHHHHHHHHHHHHH-HTTCEEEEECSS
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCC-CCCC----eEEEecccchHHHHHHHHHHHH-hcCCEEEEEECC
Confidence 4679999999988654222 1111111111111 0111 1112233445555555554332 246799999999
Q ss_pred cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 92 KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 92 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++.++.+++.|...|+++..+||+|++.+|.+++++|
T Consensus 449 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f 485 (664)
T 1c4o_A 449 VRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDL 485 (664)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999998875
No 36
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.08 E-value=9.9e-12 Score=99.29 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=76.8
Q ss_pred CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEec
Q psy9627 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAE 90 (129)
Q Consensus 11 ~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~n 90 (129)
++.+|+++||||++.. ..+...++.++..+.+.... ....++.|.++ ..+|...|..+++. ..+++||||+
T Consensus 213 ~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L~~ll~~----~~~~~LVF~~ 283 (1054)
T 1gku_B 213 VGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESISTLSSILEK----LGTGGIIYAR 283 (1054)
T ss_dssp EECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTTHHHHTT----SCSCEEEEES
T ss_pred ccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHHHHHHHHhh----cCCCEEEEEc
Confidence 5678999999999988 65555566666556655544 45567888776 35667777777775 3578999999
Q ss_pred ccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 91 TKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 91 t~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
|++.|+.+++.|+.. +++..+||+|..
T Consensus 284 t~~~a~~l~~~L~~~-~~v~~lhg~~~~ 310 (1054)
T 1gku_B 284 TGEEAEEIYESLKNK-FRIGIVTATKKG 310 (1054)
T ss_dssp SHHHHHHHHHTTTTS-SCEEECTTSSSH
T ss_pred CHHHHHHHHHHHhhc-cCeeEEeccHHH
Confidence 999999999999988 999999999953
No 37
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.03 E-value=1.6e-09 Score=84.25 Aligned_cols=109 Identities=9% Similarity=0.033 Sum_probs=79.1
Q ss_pred eEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceE-EEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccc
Q psy9627 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQ-VVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93 (129)
Q Consensus 15 Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~-~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~ 93 (129)
.+..+|+|...+..++...+--+ .+.++... ....+++ .++.+...+|...+...+.... ...+++||||+|++
T Consensus 369 kl~GmTGTa~te~~e~~~iY~l~--vv~IPtn~--p~~r~d~~d~v~~~~~~K~~al~~~i~~~~-~~~~pvLVft~s~~ 443 (844)
T 1tf5_A 369 KLAGMTGTAKTEEEEFRNIYNMQ--VVTIPTNR--PVVRDDRPDLIYRTMEGKFKAVAEDVAQRY-MTGQPVLVGTVAVE 443 (844)
T ss_dssp EEEEEESCCGGGHHHHHHHHCCC--EEECCCSS--CCCCEECCCEEESSHHHHHHHHHHHHHHHH-HHTCCEEEEESCHH
T ss_pred hhccCCcccchhHHHHHHHhCCc--eEEecCCC--CcccccCCcEEEeCHHHHHHHHHHHHHHHH-hcCCcEEEEECCHH
Confidence 45678999988777766555333 33343322 1122222 3555677889999888886531 24678999999999
Q ss_pred cHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 94 KVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 94 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.++.++..|+..|+++..|||++.+++|.-+.++|
T Consensus 444 ~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag 478 (844)
T 1tf5_A 444 TSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAG 478 (844)
T ss_dssp HHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcC
Confidence 99999999999999999999999999988766655
No 38
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.01 E-value=2.9e-09 Score=82.80 Aligned_cols=109 Identities=9% Similarity=0.071 Sum_probs=80.1
Q ss_pred eEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceE-EEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccc
Q psy9627 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQ-VVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93 (129)
Q Consensus 15 Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~-~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~ 93 (129)
.+..+|+|...+-.++...+ + ...+.++... .....++ .++.+...+|...+...+.... ...+++||||+|++
T Consensus 378 kl~GmTGTa~te~~ef~~iY-~-l~vv~IPtn~--p~~R~d~~d~v~~~~~~K~~al~~~i~~~~-~~gqpvLVft~sie 452 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIY-K-LDTVVVPTNR--PMIRKDLPDLVYMTEAEKIQAIIEDIKERT-AKGQPVLVGTISIE 452 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHH-C-CEEEECCCSS--CCCCEECCCEEESSHHHHHHHHHHHHHHHH-TTTCCEEEEESSHH
T ss_pred hhhcCCCCchhHHHHHHHHh-C-CcEEEcCCCC--CceeecCCcEEEeCHHHHHHHHHHHHHHHh-cCCCCEEEEECcHH
Confidence 45568889877766665555 2 2234444433 2222333 3455677889999988886542 34679999999999
Q ss_pred cHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 94 KVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 94 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.++.++..|+..|+++..|||++.+++|.-+.++|
T Consensus 453 ~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~ag 487 (853)
T 2fsf_A 453 KSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAG 487 (853)
T ss_dssp HHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcC
Confidence 99999999999999999999999988888777766
No 39
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.01 E-value=1.3e-09 Score=83.90 Aligned_cols=108 Identities=11% Similarity=0.112 Sum_probs=77.7
Q ss_pred eEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceE-EEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccc
Q psy9627 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQ-VVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93 (129)
Q Consensus 15 Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~-~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~ 93 (129)
.+..+|+|+..+..++...+ + ...+.++... ....+.+ ..+......|...+...+.... ...+++||||+|++
T Consensus 411 kL~GMTGTa~te~~Ef~~iY-~-l~vv~IPtnk--p~~R~d~~d~vy~t~~eK~~al~~~I~~~~-~~gqpVLVFt~S~e 485 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVY-G-MEVVVIPTHK--PMIRKDHDDLVFRTQKEKYEKIVEEIEKRY-KKGQPVLVGTTSIE 485 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHS-C-CCEEECCCSS--CCCCEECCCEEESSHHHHHHHHHHHHHHHH-HHTCCEEEEESSHH
T ss_pred HHeEECCCCchHHHHHHHHh-C-CeEEEECCCC--CcceeecCcEEEecHHHHHHHHHHHHHHHh-hCCCCEEEEECCHH
Confidence 57789999988777766555 3 2344444433 2233333 3455677889999888887542 24679999999999
Q ss_pred cHHHHHHHHHhcCceEEEecCCCChhHHHHHHhc
Q psy9627 94 KVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 94 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
.++.++..|+..|+++..|||++.+++|.-+..+
T Consensus 486 ~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~a 519 (822)
T 3jux_A 486 KSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKA 519 (822)
T ss_dssp HHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhC
Confidence 9999999999999999999999666665544433
No 40
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.01 E-value=2.4e-09 Score=77.72 Aligned_cols=65 Identities=26% Similarity=0.363 Sum_probs=52.8
Q ss_pred cchHHHHHHHHHhhhc-CCCCcEEEEecccccHHHHHHHHHhcCceEEEecC--------CCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG--------DKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~-~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg--------~~~~~~R~~~l~~~ 128 (129)
..|...|..++..... ....++||||++++.++.+++.|+..|+++..+|| +|++.+|.++++.|
T Consensus 342 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F 415 (494)
T 1wp9_A 342 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEF 415 (494)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHH
Confidence 4466777777765421 35789999999999999999999999999999999 99999999999886
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.00 E-value=6.1e-10 Score=85.87 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=68.2
Q ss_pred hhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEE------EEcC-----ccchHHHHHHHH
Q psy9627 6 RAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVV------EVCA-----EHEKENKLFGLL 74 (129)
Q Consensus 6 il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~------~~~~-----~~~k~~~L~~ll 74 (129)
++..++++.|++++|||++. .+.+.. ++..+ .+.... +. ..+...+ .... ...+...+...+
T Consensus 162 ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~---rp-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (720)
T 2zj8_A 162 ILAHMLGKAQIIGLSATIGN-PEELAE-WLNAE-LIVSDW---RP-VKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI 234 (720)
T ss_dssp HHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEE-EEECCC---CS-SEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH
T ss_pred HHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCc-ccCCCC---CC-CcceEEEEeCCeeeccccchhhhhHHHHHHHHHH
Confidence 44445457899999999974 333333 33321 111111 00 1111111 1111 123444444444
Q ss_pred HhhhcCCCCcEEEEecccccHHHHHHHHHhc------------------C---------------ceEEEecCCCChhHH
Q psy9627 75 NDISSKDENKTIIFAETKRKVDKITKSIQNY------------------G---------------WAAVGIHGDKSQQER 121 (129)
Q Consensus 75 ~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~------------------~---------------~~~~~lhg~~~~~~R 121 (129)
. ..+++||||+|++.++.++..|... + ..+..+||+|++.+|
T Consensus 235 ~-----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 309 (720)
T 2zj8_A 235 R-----KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDER 309 (720)
T ss_dssp H-----TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred h-----CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHH
Confidence 3 4689999999999999999999753 1 248999999999999
Q ss_pred HHHHhcC
Q psy9627 122 DYVLKVG 128 (129)
Q Consensus 122 ~~~l~~~ 128 (129)
..+.+.|
T Consensus 310 ~~v~~~f 316 (720)
T 2zj8_A 310 VLVEENF 316 (720)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
No 42
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.99 E-value=7.6e-10 Score=85.12 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=41.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc------------------------------CceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY------------------------------GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~------------------------------~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..+++||||++++.++.++..|... +..+..+||+|++.+|..+.+.|
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 318 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHH
Confidence 4789999999999999999998753 23578899999999999998876
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.98 E-value=6.2e-11 Score=90.16 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=61.5
Q ss_pred CCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecc
Q psy9627 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAET 91 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt 91 (129)
+++|+++||||++..+..+.. .++..+.+.... +.. +...+...+.. ..+++||||+|
T Consensus 307 ~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--------------~~~-~~~~ll~~l~~----~~~~~LVF~~s 364 (618)
T 2whx_A 307 GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--------------PER-SWNTGFDWITD----YQGKTVWFVPS 364 (618)
T ss_dssp TSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--------------CSS-CCSSSCHHHHH----CCSCEEEECSS
T ss_pred cCccEEEEECCCchhhhhhhc---cCCceeeecccC--------------CHH-HHHHHHHHHHh----CCCCEEEEECC
Confidence 678999999999877553322 233333333211 111 11112222322 36799999999
Q ss_pred cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 92 KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 92 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++.|+.+++.|+..|+++..+||+ +|.++++.|
T Consensus 365 ~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F 397 (618)
T 2whx_A 365 IKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKT 397 (618)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHH
T ss_pred hhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhh
Confidence 999999999999999999999995 677777765
No 44
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.97 E-value=4.1e-10 Score=86.17 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=40.2
Q ss_pred ccchHHHHHHHHHhhhc-CCCCcEEEEecccccHHHHHHHHHhcC----ceEEEe--------cCCCChhHHHHHHhcC
Q psy9627 63 EHEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYG----WAAVGI--------HGDKSQQERDYVLKVG 128 (129)
Q Consensus 63 ~~~k~~~L~~ll~~~~~-~~~~~~iVF~nt~~~~~~l~~~L~~~~----~~~~~l--------hg~~~~~~R~~~l~~~ 128 (129)
...|...|..++..... .+..++||||++++.++.+++.|+..| +++..+ ||+|++.+|.++++.|
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F 456 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 456 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHH
Confidence 35577788888875422 245799999999999999999999988 899999 5599999999999988
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.96 E-value=5.3e-11 Score=87.20 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=55.7
Q ss_pred CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEec
Q psy9627 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAE 90 (129)
Q Consensus 11 ~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~n 90 (129)
++++|+++||||+++.+..+... +.+ +......++...+...+..+.+ ..+++|||||
T Consensus 128 ~~~~~~l~~SAT~~~~~~~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~l~~-----~~~~~lVF~~ 185 (440)
T 1yks_A 128 ANESATILMTATPPGTSDEFPHS--NGE---------------IEDVQTDIPSEPWNTGHDWILA-----DKRPTAWFLP 185 (440)
T ss_dssp TTSCEEEEECSSCTTCCCSSCCC--SSC---------------EEEEECCCCSSCCSSSCHHHHH-----CCSCEEEECS
T ss_pred cCCceEEEEeCCCCchhhhhhhc--CCC---------------eeEeeeccChHHHHHHHHHHHh-----cCCCEEEEeC
Confidence 35789999999998765433221 011 1111111222222211222222 3679999999
Q ss_pred ccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 91 TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 91 t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
|++.|+.+++.|+..|+++..+|| .+|.++++.|
T Consensus 186 s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F 219 (440)
T 1yks_A 186 SIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTI 219 (440)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECCS----SSCC------
T ss_pred CHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhh
Confidence 999999999999999999999999 3577777776
No 46
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.93 E-value=6e-10 Score=82.54 Aligned_cols=125 Identities=13% Similarity=0.055 Sum_probs=76.8
Q ss_pred hhhhhccCCCCceEEEEEecCcHHHHHHHH-HhccCccEEEeCCCCc-----ccCCCceEEEEEcC--------------
Q psy9627 3 WASRAMTYKPDRQVLMWSATWPREVQKLAE-DFLDSYIQINIGSLTL-----SANHNIQQVVEVCA-------------- 62 (129)
Q Consensus 3 ~~~il~~l~~~~Q~ll~SAT~~~~v~~~~~-~~~~~~~~i~~~~~~~-----~~~~~i~~~~~~~~-------------- 62 (129)
+..+++.+++..+++++|||.+........ ..+.++..+.+..... -.+..+....+..+
T Consensus 242 ~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (510)
T 2oca_A 242 ISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQE 321 (510)
T ss_dssp HHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHH
T ss_pred HHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHH
Confidence 346778887888999999998765433221 1222333333322210 01111111111111
Q ss_pred -------ccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 63 -------EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 63 -------~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
...|...+..++.........++||||+ .+.++.+++.|...+.++..+||+|++.+|.+++++|
T Consensus 322 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f 393 (510)
T 2oca_A 322 EIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLA 393 (510)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHH
Confidence 1223444555665543334566777777 8889999999999988999999999999999999876
No 47
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.92 E-value=1.1e-08 Score=79.97 Aligned_cols=109 Identities=11% Similarity=0.056 Sum_probs=79.1
Q ss_pred eEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceE-EEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccc
Q psy9627 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQ-VVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93 (129)
Q Consensus 15 Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~-~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~ 93 (129)
.+..+|+|...+-.++...+ + ...+.++... .....++ .++.+....|...+...+.... ...+++||||+|++
T Consensus 397 kL~GMTGTa~te~~Ef~~iY-~-l~vv~IPtn~--p~~R~d~~d~v~~t~~~K~~al~~~i~~~~-~~gqpvLVft~Sie 471 (922)
T 1nkt_A 397 KLAGMTGTAQTEAAELHEIY-K-LGVVSIPTNM--PMIREDQSDLIYKTEEAKYIAVVDDVAERY-AKGQPVLIGTTSVE 471 (922)
T ss_dssp EEEEEESCCGGGHHHHHHHH-C-CEEEECCCSS--CCCCEECCCEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEESCHH
T ss_pred hhhccccCchhHHHHHHHHh-C-CCeEEeCCCC--CcccccCCcEEEeCHHHHHHHHHHHHHHHH-hcCCcEEEEECCHH
Confidence 45668899877766665555 2 2234444433 1122222 3455677889999888886532 24679999999999
Q ss_pred cHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 94 KVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 94 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.++.++..|+..|+++..|||++.+++|.-+.++|
T Consensus 472 ~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~ag 506 (922)
T 1nkt_A 472 RSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAG 506 (922)
T ss_dssp HHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcC
Confidence 99999999999999999999999888887776665
No 48
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.90 E-value=1.2e-08 Score=78.53 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=42.1
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcC------------------------------------ceEEEecCCCChhHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYG------------------------------------WAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~------------------------------------~~~~~lhg~~~~~~R~~~ 124 (129)
..+++||||++++.++.++..|.... ..+..+||+|++.+|..+
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 56899999999999999999997642 248999999999999999
Q ss_pred HhcC
Q psy9627 125 LKVG 128 (129)
Q Consensus 125 l~~~ 128 (129)
.+.|
T Consensus 331 ~~~f 334 (715)
T 2va8_A 331 EEGF 334 (715)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.88 E-value=1.2e-09 Score=83.48 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=39.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQER 121 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 121 (129)
..+++||||||++.++++++.|++.|+++..+||+|++++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er 435 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVI 435 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGS
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHH
Confidence 57899999999999999999999999999999999999875
No 50
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.86 E-value=2.9e-09 Score=81.75 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=40.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..+++||||||++.++.+++.|+..|+++..+||+ +|.++++.|
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F 452 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKC 452 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHH
Confidence 47899999999999999999999999999999993 788888887
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.86 E-value=3.8e-09 Score=77.16 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=39.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..+++|||||+++.++.+++.|+..|+++..+||+ +|.+++++|
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f 213 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKC 213 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhh
Confidence 46799999999999999999999999999999997 566777665
No 52
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.82 E-value=5.2e-09 Score=80.15 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=42.3
Q ss_pred CCcEEEEecccccHHHHHHHHHhc------CceEEEecCC--------CChhHHHHHHhcC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNY------GWAAVGIHGD--------KSQQERDYVLKVG 128 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~------~~~~~~lhg~--------~~~~~R~~~l~~~ 128 (129)
..++||||++++.++.+++.|+.. |+++..+||+ |++.+|.+++++|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F 460 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKF 460 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHH
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHH
Confidence 689999999999999999999987 9999999999 9999999999987
No 53
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.80 E-value=1.9e-08 Score=74.74 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHhhh-cCCCCcEEEEecccccHHHHHHHHHhc------------CceEEEecCCCChhHHHHHHhcCC
Q psy9627 64 HEKENKLFGLLNDIS-SKDENKTIIFAETKRKVDKITKSIQNY------------GWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~-~~~~~~~iVF~nt~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
..|...|..++.... ..+..++||||++++.++.+++.|+.. |.....+||+|++.+|.+++++|.
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 346666666665432 135689999999999999999999875 566667788899999999999883
No 54
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.76 E-value=1.3e-09 Score=80.20 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=59.2
Q ss_pred CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEec
Q psy9627 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAE 90 (129)
Q Consensus 11 ~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~n 90 (129)
++++|+++||||+|..+..+... +.|+... .. .++. .+...+...+.. ..+++|||||
T Consensus 141 ~~~~~~il~SAT~~~~~~~~~~~--~~pi~~~-~~--------------~~~~-~~~~~~~~~l~~----~~~~~LVF~~ 198 (459)
T 2z83_A 141 LGEAAAIFMTATPPGTTDPFPDS--NAPIHDL-QD--------------EIPD-RAWSSGYEWITE----YAGKTVWFVA 198 (459)
T ss_dssp TTSCEEEEECSSCTTCCCSSCCC--SSCEEEE-EC--------------CCCS-SCCSSCCHHHHH----CCSCEEEECS
T ss_pred cCCccEEEEEcCCCcchhhhccC--CCCeEEe-cc--------------cCCc-chhHHHHHHHHh----cCCCEEEEeC
Confidence 36789999999998764332211 1222221 10 0111 111111223333 3679999999
Q ss_pred ccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 91 TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 91 t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
|++.|+.+++.|+..|+++..+||+ +|..+++.|
T Consensus 199 s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f 232 (459)
T 2z83_A 199 SVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKC 232 (459)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGS
T ss_pred ChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhc
Confidence 9999999999999999999999995 555666655
No 55
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.75 E-value=1.3e-08 Score=70.25 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=59.2
Q ss_pred cCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc-CceEEEecCCCChhHHHHHHhcC
Q psy9627 61 CAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 61 ~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.....|+..|..+++.+. ....++||||++...++.+...|... |+++..+||++++.+|.++++.|
T Consensus 92 ~~~s~K~~~L~~ll~~~~-~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F 159 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKF 159 (271)
T ss_dssp STTCHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHH-hCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHh
Confidence 345679999999998764 24679999999999999999999885 99999999999999999999887
No 56
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.74 E-value=4.8e-09 Score=77.00 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=60.5
Q ss_pred CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEec
Q psy9627 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAE 90 (129)
Q Consensus 11 ~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~n 90 (129)
++++|++++|||+|.++... ...++..+.+.... +. .+ + ..+...+.. ..+++|||||
T Consensus 139 ~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~---p~--~~-~---------~~~~~~l~~----~~~~~lVF~~ 196 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREI---PE--RS-W---------NTGFDWITD----YQGKTVWFVP 196 (451)
T ss_dssp TTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCC---CS--SC-C---------SSSCHHHHH----CCSCEEEECS
T ss_pred CCCceEEEEccCCCccchhh---hcCCCceEecCccC---Cc--hh-h---------HHHHHHHHh----CCCCEEEEcC
Confidence 56789999999998754432 22344444433211 00 00 0 011222332 3679999999
Q ss_pred ccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 91 TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 91 t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
|++.|+.+++.|+..|+++..+||++. .++++.|
T Consensus 197 s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f 230 (451)
T 2jlq_A 197 SIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKT 230 (451)
T ss_dssp SHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGG
T ss_pred CHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhh
Confidence 999999999999999999999999865 3566655
No 57
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.72 E-value=1e-07 Score=79.50 Aligned_cols=115 Identities=10% Similarity=0.083 Sum_probs=70.9
Q ss_pred cCCCCceEEEEEecCcHHHHHHHHHhccCc-cEEEeCCCCcccCCCceEEEEEcCccchHHH-------HHHHHHhhhcC
Q psy9627 9 TYKPDRQVLMWSATWPREVQKLAEDFLDSY-IQINIGSLTLSANHNIQQVVEVCAEHEKENK-------LFGLLNDISSK 80 (129)
Q Consensus 9 ~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~-~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~-------L~~ll~~~~~~ 80 (129)
.++++.|++++|||++. .++++...-.++ ....+.... +. ..+++++........... +...+... .
T Consensus 1079 ~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~-RP-vpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~--~ 1153 (1724)
T 4f92_B 1079 QIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNV-RP-VPLELHIQGFNISHTQTRLLSMAKPVYHAITKH--S 1153 (1724)
T ss_dssp TTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGG-CS-SCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH--C
T ss_pred hcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCC-CC-CCeEEEEEeccCCCchhhhhhhcchHHHHHHHh--c
Confidence 45678899999999974 444554432232 222333222 22 234444443333222211 22233332 4
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc----------------------------------CceEEEecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY----------------------------------GWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~----------------------------------~~~~~~lhg~~~~~~R~~~l~ 126 (129)
+.+++||||+|++.|+..+..|... ...++.+||+|++.+|..+.+
T Consensus 1154 ~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~ 1233 (1724)
T 4f92_B 1154 PKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQ 1233 (1724)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHH
T ss_pred CCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHH
Confidence 5689999999999999888776321 235889999999999999988
Q ss_pred cC
Q psy9627 127 VG 128 (129)
Q Consensus 127 ~~ 128 (129)
.|
T Consensus 1234 lF 1235 (1724)
T 4f92_B 1234 LF 1235 (1724)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 58
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.70 E-value=1.2e-07 Score=73.89 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=31.8
Q ss_pred cchHHHHHHHHHhhh-cCCCCcEEEEecccccHHHHHHHHHhc------------CceEEEecCCCChhHHHHHHhcCC
Q psy9627 64 HEKENKLFGLLNDIS-SKDENKTIIFAETKRKVDKITKSIQNY------------GWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~-~~~~~~~iVF~nt~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
..|+..|..++.... ..+..++||||++++.++.+++.|+.. |..+..+||+|++.+|..+++.|.
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 336666666665432 245689999999999999999999873 667778899999999999999883
No 59
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.64 E-value=1.4e-07 Score=78.72 Aligned_cols=116 Identities=16% Similarity=0.237 Sum_probs=71.3
Q ss_pred cCCCCceEEEEEecCcHHHHHHHHHhcc-Cc-cEE-EeCCCCcccCCCceEEEEEcCccc---hHHHHHHHHHh-hhc-C
Q psy9627 9 TYKPDRQVLMWSATWPREVQKLAEDFLD-SY-IQI-NIGSLTLSANHNIQQVVEVCAEHE---KENKLFGLLND-ISS-K 80 (129)
Q Consensus 9 ~l~~~~Q~ll~SAT~~~~v~~~~~~~~~-~~-~~i-~~~~~~~~~~~~i~~~~~~~~~~~---k~~~L~~ll~~-~~~-~ 80 (129)
.+++..|++++|||+|. .+++++ ++. ++ ..+ .+.... + +..+++.++.+.... +...+...+.. +.. .
T Consensus 240 ~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~~~-R-PvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 315 (1724)
T 4f92_B 240 MTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFYFDNSF-R-PVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHA 315 (1724)
T ss_dssp HHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEECCGGG-C-SSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred hCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEEECCCC-c-cCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHh
Confidence 45678899999999974 444443 333 21 112 222221 2 234566665555433 22223322221 111 2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc-------------------------------------CceEEEecCCCChhHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY-------------------------------------GWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~-------------------------------------~~~~~~lhg~~~~~~R~~ 123 (129)
...++||||+|++.|+.++..|... ...++..||+|++.+|..
T Consensus 316 ~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~ 395 (1724)
T 4f92_B 316 GKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTL 395 (1724)
T ss_dssp SSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHH
T ss_pred cCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHH
Confidence 4579999999999999998888531 234789999999999999
Q ss_pred HHhcC
Q psy9627 124 VLKVG 128 (129)
Q Consensus 124 ~l~~~ 128 (129)
+-++|
T Consensus 396 vE~~F 400 (1724)
T 4f92_B 396 VEDLF 400 (1724)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88766
No 60
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.62 E-value=6.4e-08 Score=72.99 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=40.1
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce--------EEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA--------AVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~--------~~~lhg~~~~~~R~~~l~~~ 128 (129)
..+++||||++++.|+.+++.|...+.. +..+||++++ +|.+++++|
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F 492 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRF 492 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHH
Confidence 4589999999999999999999876543 7889999875 788888876
No 61
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.60 E-value=2.7e-08 Score=77.50 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=67.7
Q ss_pred cCCCCceEEEEEecCcHHHHHHHHHhccC--ccEEEeCCCCcccCCCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEE
Q psy9627 9 TYKPDRQVLMWSATWPREVQKLAEDFLDS--YIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTI 86 (129)
Q Consensus 9 ~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~--~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~i 86 (129)
.....+|++++|||.++...... ...+ ...+...... ...+...+ ++ ..+...+...+.... ....+++
T Consensus 512 ~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~---r~~i~~~~--~~-~~~~~~l~~~i~~~l-~~g~qvl 582 (780)
T 1gm5_A 512 NKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPG---RKEVQTML--VP-MDRVNEVYEFVRQEV-MRGGQAF 582 (780)
T ss_dssp SSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSS---CCCCEECC--CC-SSTHHHHHHHHHHHT-TTSCCBC
T ss_pred HhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCC---CcceEEEE--ec-cchHHHHHHHHHHHH-hcCCcEE
Confidence 33456899999999766554433 2222 2222111111 12233222 22 233344444444322 3567999
Q ss_pred EEeccc--------ccHHHHHHHHHh---cCceEEEecCCCChhHHHHHHhcC
Q psy9627 87 IFAETK--------RKVDKITKSIQN---YGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 87 VF~nt~--------~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
|||++. ..++.+++.|.. .++.+..+||+|++.+|.+++++|
T Consensus 583 Vf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F 635 (780)
T 1gm5_A 583 IVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEF 635 (780)
T ss_dssp CBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHH
T ss_pred EEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 999965 558889999988 578999999999999999999987
No 62
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.57 E-value=7.3e-08 Score=76.68 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=58.2
Q ss_pred cCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh-cCceEEEecCCCChhHHHHHHhcC
Q psy9627 61 CAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN-YGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 61 ~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+....|...|..+++. ....++||||++++.++.+++.|.. .|+++..+||+|++.+|.++++.|
T Consensus 485 ~~~~~K~~~L~~ll~~---~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F 550 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTS---HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF 550 (968)
T ss_dssp TTTSHHHHHHHHHHHH---TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHh---CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 4456789999998886 4678999999999999999999995 699999999999999999999887
No 63
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.54 E-value=4.3e-09 Score=77.28 Aligned_cols=59 Identities=27% Similarity=0.328 Sum_probs=49.8
Q ss_pred CccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 62 AEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 62 ~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
....|...|..+++. ....++||||++.+.++.+++.|. +..+||++++.+|.+++++|
T Consensus 332 ~~~~k~~~l~~~l~~---~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F 390 (472)
T 2fwr_A 332 NSKNKIRKLREILER---HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGF 390 (472)
T ss_dssp SCSHHHHHHHHHHHH---TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHH
T ss_pred cChHHHHHHHHHHHh---CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHH
Confidence 345577778888876 457899999999999999999984 55799999999999999876
No 64
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.52 E-value=2.8e-08 Score=76.37 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=43.3
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
....||||+|++.++.+++.|+..|+.+..+||+|++.+|..+++.|
T Consensus 320 ~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F 366 (677)
T 3rc3_A 320 RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKF 366 (677)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999876
No 65
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.40 E-value=2.1e-07 Score=68.98 Aligned_cols=66 Identities=24% Similarity=0.267 Sum_probs=35.1
Q ss_pred cchHHHHHHHHHhhhc-CCCCcEEEEecccccHHHHHHHHHhcC------------ceEEEecCCCChhHHHHHHhcCC
Q psy9627 64 HEKENKLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNYG------------WAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~-~~~~~~iVF~nt~~~~~~l~~~L~~~~------------~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
..|...|..++..... .+..++||||++++.++.+++.|+..+ .....+||+|++.+|.++++.|.
T Consensus 370 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 5688888888875432 346899999999999999999998764 34445566999999999999883
No 66
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.39 E-value=5e-07 Score=69.05 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=56.5
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|...|..++..+......++||||++...++.+...|...|+++..+||++++.+|.++++.|
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F 462 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERF 462 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 44777777777765334578999999999999999999999999999999999999999999887
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.38 E-value=5.7e-07 Score=66.41 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=56.7
Q ss_pred ccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc-CceEEEecCCCChhHHHHHHhcC
Q psy9627 63 EHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY-GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 63 ~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
...|...+..++.... ....++||||++...++.+.+.|... |+++..+||++++.+|.++++.|
T Consensus 323 ~s~K~~~l~~~l~~~~-~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F 388 (500)
T 1z63_A 323 RSGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKF 388 (500)
T ss_dssp TCHHHHHHHHHHHHHH-TTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHH-ccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHh
Confidence 3568888888887653 35679999999999999999999885 99999999999999999999887
No 68
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.31 E-value=6.3e-07 Score=71.13 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHhhh-cCCCCcEEEEecccccHHHHHHHHHhc------------CceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDIS-SKDENKTIIFAETKRKVDKITKSIQNY------------GWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~-~~~~~~~iVF~nt~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|...|..++.... .....++||||++++.++.+++.|... |..+..+||+|++.+|.+++++|
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHh
Confidence 558888888887643 234689999999999999999999986 66667779999999999999988
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.5e-06 Score=66.73 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=57.7
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|+..|..++..+. ....++||||+....++.+...|...|+++..+||++++.+|.++++.|
T Consensus 555 s~K~~~L~~lL~~~~-~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F 618 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHF 618 (800)
T ss_dssp CHHHHHHHHHHHHHT-TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHh-hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 457888888888763 3567999999999999999999999999999999999999999999998
No 70
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.25 E-value=2e-06 Score=57.90 Aligned_cols=44 Identities=61% Similarity=1.083 Sum_probs=38.6
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLT 47 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~ 47 (129)
..+++.+++++|+++||||+|++++++++.++++|+.|.++..+
T Consensus 198 ~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~e 241 (242)
T 3fe2_A 198 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALE 241 (242)
T ss_dssp HHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC--
T ss_pred HHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCCC
Confidence 45777888899999999999999999999999999999988754
No 71
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.17 E-value=2.6e-06 Score=57.57 Aligned_cols=45 Identities=49% Similarity=0.830 Sum_probs=30.7
Q ss_pred CceEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEEE
Q psy9627 13 DRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVV 58 (129)
Q Consensus 13 ~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~ 58 (129)
++|+++||||+|++++++++.++.+|..|.++... ...++++|++
T Consensus 209 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~q~~ 253 (253)
T 1wrb_A 209 NRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG-STSDSIKQEI 253 (253)
T ss_dssp GCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--------------
T ss_pred CcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC-CCcCCceecC
Confidence 68999999999999999999999999999998876 5667787753
No 72
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.12 E-value=5.3e-06 Score=57.81 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=37.0
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 45 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~ 45 (129)
.+++.+++.+|+++||||+|.++.++++.++++|..|.+..
T Consensus 259 ~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 259 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp HHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 46677788999999999999999999999999999998764
No 73
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.99 E-value=1.1e-05 Score=54.71 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=36.6
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 44 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~ 44 (129)
..+++.+++.+|+++||||++.+++++++.++++|..|.++
T Consensus 208 ~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 208 DKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 45677778899999999999999999999999999988765
No 74
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.95 E-value=1.2e-05 Score=53.66 Aligned_cols=42 Identities=24% Similarity=0.206 Sum_probs=37.1
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 45 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~ 45 (129)
..+++.+++.+|++++|||+|++++++++.++.+|..|.++.
T Consensus 193 ~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 193 NAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 356677788999999999999999999999999999988764
No 75
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.94 E-value=8.6e-06 Score=54.62 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=34.6
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 45 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~ 45 (129)
.+++.+++.+|++++|||+|++++++++.++++|..|.++.
T Consensus 196 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~~ 236 (237)
T 3bor_A 196 EIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKK 236 (237)
T ss_dssp HHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC---
T ss_pred HHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEecC
Confidence 46667788899999999999999999999999999887653
No 76
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.94 E-value=1e-05 Score=53.80 Aligned_cols=40 Identities=35% Similarity=0.617 Sum_probs=35.2
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEe
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINI 43 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~ 43 (129)
..+++.+++++|++++|||+|+++++++..++++|..|.+
T Consensus 189 ~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 189 RKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp HHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred HHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 3566777889999999999999999999999999988764
No 77
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.91 E-value=1.6e-05 Score=51.90 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=35.2
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 44 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~ 44 (129)
.++..+++.+|++++|||+|++++++++.++.+|..|.+.
T Consensus 167 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 167 ALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp HHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 4566678889999999999999999999999999988764
No 78
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.90 E-value=1.4e-05 Score=52.87 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=36.6
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL 46 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 46 (129)
..+++.+++.+|++++|||+|+++.++++.++++|..+.+...
T Consensus 172 ~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 172 DQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp HHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred HHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 3566777888999999999999999999999999998887653
No 79
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.87 E-value=1.8e-05 Score=53.09 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=32.6
Q ss_pred CCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCC
Q psy9627 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLT 47 (129)
Q Consensus 11 ~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~ 47 (129)
+++.|+++||||+|++++++++.++++|..|.++..+
T Consensus 208 ~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~ 244 (245)
T 3dkp_A 208 SHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARN 244 (245)
T ss_dssp CTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC--
T ss_pred CCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCCC
Confidence 4578999999999999999999999999999988754
No 80
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.83 E-value=2.1e-05 Score=52.04 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=35.0
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeCCCC
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLT 47 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~ 47 (129)
..++..+++.+|++++|||+|+++.++++.++.+|..|.+....
T Consensus 177 ~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~~ 220 (224)
T 1qde_A 177 YQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE 220 (224)
T ss_dssp HHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-----
T ss_pred HHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCCc
Confidence 34666778899999999999999999999999999998877654
No 81
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.77 E-value=1.9e-05 Score=52.67 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=34.6
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEeC
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 44 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~ 44 (129)
.+++.+++.+|++++|||+|+++.+++..++++|..|.+.
T Consensus 190 ~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 190 WIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp HHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred HHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 3667778889999999999999999999999999888654
No 82
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.72 E-value=2.5e-05 Score=51.57 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=34.0
Q ss_pred hhhccCCCCceEEEEEecCcHHHHHHHHHhccCccEEEe
Q psy9627 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINI 43 (129)
Q Consensus 5 ~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~ 43 (129)
.+++.+++.+|++++|||+|.+++++++.++.+|..|.+
T Consensus 182 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 182 EIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp HHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred HHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence 456667888999999999999999999999999987753
No 83
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.34 E-value=0.00024 Score=48.36 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=30.9
Q ss_pred hhhhccCCCCceEEEEEecCcHHHHHHHHHhccCcc
Q psy9627 4 ASRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYI 39 (129)
Q Consensus 4 ~~il~~l~~~~Q~ll~SAT~~~~v~~~~~~~~~~~~ 39 (129)
..+++.+++.+|+++||||+|++++++++.+++++.
T Consensus 223 ~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 223 KQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 456777788999999999999999999999987543
No 84
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=96.84 E-value=0.00094 Score=53.80 Aligned_cols=25 Identities=0% Similarity=0.008 Sum_probs=22.1
Q ss_pred CCcEEEEecccccHHHHHHHHHhcC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYG 106 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~ 106 (129)
..++||||+|+..|..+++.|...+
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhh
Confidence 4689999999999999999997754
No 85
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.67 E-value=0.0055 Score=46.79 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=61.8
Q ss_pred CCceEEEEEecCcHHHHHHHHH-hccCccEEEeCCCCcccCCCceEEEEEcCc-------cch--HHHHHHHHHhhhcCC
Q psy9627 12 PDRQVLMWSATWPREVQKLAED-FLDSYIQINIGSLTLSANHNIQQVVEVCAE-------HEK--ENKLFGLLNDISSKD 81 (129)
Q Consensus 12 ~~~Q~ll~SAT~~~~v~~~~~~-~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-------~~k--~~~L~~ll~~~~~~~ 81 (129)
..+.++++|||+++ ...+... .+. +..+.+++.- . ..+. ..+.++. .+. ...+...+..+....
T Consensus 374 ~~~~~il~SaTL~p-~~~~~~~lGl~-~~~~~~~spf-~-~~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~ 447 (620)
T 4a15_A 374 KESKTIHMSGTLDP-FDFYSDITGFE-IPFKKIGEIF-P-PENR--YIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV 447 (620)
T ss_dssp GGSEEEEEESSCCS-HHHHHHHHCCC-CCEEECCCCS-C-GGGE--EEEEECCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEEccCCCc-HHHHHHHhCCC-ceeeecCCCC-C-HHHe--EEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC
Confidence 55789999999986 3333322 222 4444444432 1 1221 2221111 111 223333343333345
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++.++||++|-...+.+++.++. +... ...+++..+|...++.|
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f 491 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKF 491 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHh
Confidence 78899999999999999998873 3322 55566677888888876
No 86
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=96.11 E-value=0.0095 Score=34.92 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=38.3
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
+...+..+ .+..+++|||.+..++...+..|+..|+++..|.||+..=
T Consensus 45 l~~~~~~l--~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~W 92 (108)
T 3gk5_A 45 LREKWKIL--ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQSW 92 (108)
T ss_dssp HHHHGGGS--CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHHH
T ss_pred HHHHHHhC--CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHHH
Confidence 33344443 3457899999999999999999999999999999997653
No 87
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=95.99 E-value=0.026 Score=31.35 Aligned_cols=38 Identities=8% Similarity=0.309 Sum_probs=31.7
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
.+..+++|+|++..++...+..|+..|++ +..+ |++..
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~~ 77 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLKD 77 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETTT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHHH
Confidence 34578999999999999999999999986 6666 87654
No 88
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=95.72 E-value=0.01 Score=34.70 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=33.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 117 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~ 117 (129)
+..+++|+|.+..++...+..|+..|+++..+.||+.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 4578999999999999999999999999999998864
No 89
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=95.68 E-value=0.011 Score=33.64 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=33.1
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
.+++|||.+..++...+..|+..|+++..|.|++..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHHH
Confidence 889999999999999999999999998899999764
No 90
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=95.62 E-value=0.021 Score=34.27 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=33.6
Q ss_pred CCCcEEEEeccccc--HHHHHHHHHhcCceEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRK--VDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~--~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
+..+++|||.+..+ +...+..|+..|+++..|.||+..
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 45689999999888 899999999999999999998764
No 91
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=95.61 E-value=0.012 Score=34.09 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=33.9
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
+..+++|||++..++...+..|+..|+++..|.|++..
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHA 92 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHHH
Confidence 45789999999999999999999999999999998753
No 92
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=95.54 E-value=0.012 Score=33.90 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=34.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
+..+++|||.+..++...+..|+..|+++..|.|++..
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMDE 92 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHHH
Confidence 45789999999999999999999999999999998753
No 93
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=95.54 E-value=0.02 Score=34.44 Aligned_cols=37 Identities=11% Similarity=0.252 Sum_probs=33.5
Q ss_pred CcEEEEe-cccccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 83 NKTIIFA-ETKRKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 83 ~~~iVF~-nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
.+++||| ++..++...+..|+..|+.+..|.||+..=
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 7899999 588899999999999999999999998754
No 94
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=95.32 E-value=0.031 Score=32.54 Aligned_cols=39 Identities=8% Similarity=0.130 Sum_probs=34.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 119 (129)
+..+++|||.+..++...+..|+..|++ +..|.|++..=
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 96 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHH
Confidence 4578999999999999999999999995 88999997653
No 95
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.15 E-value=0.24 Score=39.70 Aligned_cols=84 Identities=8% Similarity=0.016 Sum_probs=54.3
Q ss_pred eEEEEEecCcHHHHHHHHHhccCccEEEeCCCCcccCCCceEE-EEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccc
Q psy9627 15 QVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQV-VEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKR 93 (129)
Q Consensus 15 Q~ll~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~-~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~ 93 (129)
....+|.|...+-.++...+ +-. .+.++...+. ...++. .+......|+..+..-+.... ...+|+||+|.|.+
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY-~l~-Vv~IPTn~p~--~R~D~~d~vy~t~~~K~~AIv~eI~~~~-~~GqPVLVgT~SIe 454 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIY-GMD-VVVVPTNRPV--IRKDFPDVVYRTEKGKFYAVVEEIAEKY-ERGQPVLVGTISIE 454 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHH-CCC-EEECCCSSCC--CCEEEEEEEESSHHHHHHHHHHHHHHHH-HHTCCEEEECSSHH
T ss_pred HheecCCCchHHHHHHHHHh-CCC-EEEcCCCCCc--ccccCCCeEEcCHHHHHHHHHHHHHHHH-HCCCCEEEEeCCHH
Confidence 46678999877766655544 322 3444443311 222222 233455778888766665442 35789999999999
Q ss_pred cHHHHHHHHH
Q psy9627 94 KVDKITKSIQ 103 (129)
Q Consensus 94 ~~~~l~~~L~ 103 (129)
..+.++..|+
T Consensus 455 ~SE~LS~~L~ 464 (997)
T 2ipc_A 455 KSERLSQMLK 464 (997)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999999
No 96
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=94.89 E-value=0.045 Score=33.76 Aligned_cols=37 Identities=11% Similarity=0.111 Sum_probs=32.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCc-eEEEecCCCC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKS 117 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~-~~~~lhg~~~ 117 (129)
+..+++|||++..++...+..|+..|+ .+..|-|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 457899999999999999999999999 4999999984
No 97
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=94.83 E-value=0.021 Score=33.23 Aligned_cols=38 Identities=5% Similarity=0.269 Sum_probs=33.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+..+++|||++..++...+..|+..|+. +..|.||+..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 4568999999999999999999999995 8899998764
No 98
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=94.76 E-value=0.04 Score=33.66 Aligned_cols=38 Identities=18% Similarity=0.448 Sum_probs=33.9
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCc-eEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 118 (129)
+..+++|||.+..++...+..|+..|+ .+..|.||+..
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 457899999999999999999999999 59999999764
No 99
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=94.69 E-value=0.029 Score=33.88 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=33.9
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+..+++|||++..++...+..|+..|++ +..|.|++..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 4578999999999999999999999995 8899999865
No 100
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=94.60 E-value=0.047 Score=31.92 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=33.8
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
.+..+++|||.+..++...+..|+..|+....|.|++..
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 92 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYD 92 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHHH
Confidence 345789999999999999999999999976888899764
No 101
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.041 Score=33.50 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=33.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+..+++|||.+..++...+..|+..|++ +..|.|++..
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMND 128 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 4578999999999999999999999995 8899998754
No 102
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=94.46 E-value=0.038 Score=34.11 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=33.6
Q ss_pred CCCcEEEEeccc--ccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 81 DENKTIIFAETK--RKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~--~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
+..+++|||.+. .++...+..|+..|+++..|.||+..
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 457899999988 68999999999999999999999764
No 103
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=94.14 E-value=0.035 Score=33.73 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=33.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+..+++|||.+..++...+..|+..|+. +..|.|++..
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 4578999999999999999999999996 9999998754
No 104
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.08 E-value=0.49 Score=35.43 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHH
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l 125 (129)
..+...+..+....++.++||++|-...+.+++. .+.++..=..+++..++.+.+
T Consensus 379 ~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~~~~~~~~ 433 (551)
T 3crv_A 379 KRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSVEDLYSAI 433 (551)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCHHHHHHHH
Confidence 3444555444445678999999999999999873 455554433356655555444
No 105
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=93.98 E-value=0.16 Score=34.49 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=34.4
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 119 (129)
...+++|||.+..++...+..|+..|++ +..|.|++..=
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W 268 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 268 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHH
Confidence 4578999999999999999999999995 99999998764
No 106
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=93.92 E-value=0.08 Score=32.06 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=32.9
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKS 117 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~ 117 (129)
+..+++|||.+-.++...+..|+..|+. +..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3478999999999999999999999994 999999984
No 107
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=93.61 E-value=0.054 Score=33.29 Aligned_cols=38 Identities=5% Similarity=0.269 Sum_probs=33.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+..+++|||++..++...+..|+..|+. +..|.||+..
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 93 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 93 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 4568999999999999999999999995 8889988654
No 108
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.99 E-value=0.55 Score=30.33 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=36.6
Q ss_pred CcEEEEecccccHHHHHHHHHhc-----CceEEEecCCCChhHHHHHHh
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.++||.|+|+.-++.+++.++.. ++.+..++|+.+..++.+.+.
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 131 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK 131 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh
Confidence 48999999999999888887664 789999999999877665554
No 109
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=92.90 E-value=0.28 Score=34.64 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=48.2
Q ss_pred CccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 62 AEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 62 ~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
...-|+..|..++..+. ....+++||++..+..+-+.+++...|++...+-|....+
T Consensus 106 ~~SGKf~~L~~LL~~l~-~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~ 162 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQ-EYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS 162 (328)
T ss_dssp HTCHHHHHHHHHHHHHT-TSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--
T ss_pred HcCccHHHHHHHHHHHH-hCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh
Confidence 45669999999998774 3567999999999999999999999999999999995543
No 110
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=92.62 E-value=0.13 Score=34.84 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=33.7
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
.+..+++|||.+..++...+..|+..|++ +..|.|++..
T Consensus 221 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 260 (271)
T 1e0c_A 221 TPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGE 260 (271)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHH
Confidence 34578999999999999999999999995 8899998754
No 111
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=92.38 E-value=0.2 Score=33.99 Aligned_cols=49 Identities=8% Similarity=0.169 Sum_probs=36.7
Q ss_pred HHHHHHhhhcCCCCcEEEEeccccc-HHHHHHHHHhcCc-eEEEecCCCCh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRK-VDKITKSIQNYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~-~~~l~~~L~~~~~-~~~~lhg~~~~ 118 (129)
+...+..+...+..++||||.+-.+ +...+..|+..|+ .+..|.|++..
T Consensus 74 ~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~ 124 (280)
T 1urh_A 74 FAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAG 124 (280)
T ss_dssp HHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 3344444322356789999998777 8999999999999 59999998754
No 112
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.89 E-value=0.67 Score=32.98 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=38.5
Q ss_pred CCCCcEEEEecccccHHHHHHHHHh---cCceEEEecCCCChhHHHHH
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~ 124 (129)
....++||-++|+.-+..+++.++. .|+++..+||+.+..+|...
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 109 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKF 109 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHH
Confidence 3567999999999999999999988 58899999999998665443
No 113
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=91.89 E-value=0.15 Score=31.71 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=31.8
Q ss_pred CCcEEEEecccc---------cHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 82 ENKTIIFAETKR---------KVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 82 ~~~~iVF~nt~~---------~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
..++||||.+-. .+..++..|...|+++..|.||+..
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~~ 138 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSS 138 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHHH
Confidence 579999998884 4888999999999999999998653
No 114
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=91.23 E-value=0.28 Score=33.67 Aligned_cols=39 Identities=10% Similarity=-0.104 Sum_probs=34.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 119 (129)
...++++||.+-.++...+..|...|++ +..|.|++..=
T Consensus 239 ~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W 278 (296)
T 1rhs_A 239 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEW 278 (296)
T ss_dssp TTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHHH
Confidence 4578999999999999999999999995 88999987653
No 115
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=91.19 E-value=0.59 Score=27.60 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=34.2
Q ss_pred EEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 85 TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+||.....-..++...++..|..+..++++.+...|.+-++.|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleef 48 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEF 48 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHH
Confidence 34566666667777788888899999999999998887776654
No 116
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=91.09 E-value=0.31 Score=33.13 Aligned_cols=49 Identities=8% Similarity=0.221 Sum_probs=36.8
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHH-hcCc-eEEEecCCCCh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQ-NYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~-~~~~-~~~~lhg~~~~ 118 (129)
+...+.........+++|||.+-.++...+..|+ ..|+ .+..|.|++..
T Consensus 221 l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~ 271 (285)
T 1uar_A 221 LRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTE 271 (285)
T ss_dssp HHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHH
T ss_pred HHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHHH
Confidence 3344443211345789999999999999999999 8999 58999998754
No 117
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=90.82 E-value=0.17 Score=34.63 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=35.1
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCc-eEEEecCCCChhH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKSQQE 120 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~-~~~~lhg~~~~~~ 120 (129)
+..++++||++..++...+..|+..|+ .+..|.||+..-.
T Consensus 180 kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~ 220 (265)
T 4f67_A 180 KDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILNYL 220 (265)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHHHH
Confidence 567999999999999999999999999 5999999986543
No 118
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=90.74 E-value=0.34 Score=32.80 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=36.5
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh-cCce-EEEecCCCCh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN-YGWA-AVGIHGDKSQ 118 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~-~~~~-~~~lhg~~~~ 118 (129)
|...+.........++++||.+-.++...+..|+. .|++ +..|.|++..
T Consensus 214 l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~ 264 (277)
T 3aay_A 214 LAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTE 264 (277)
T ss_dssp HHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHH
T ss_pred HHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHHH
Confidence 44444432123457899999999999999999985 8995 8999998653
No 119
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=90.19 E-value=0.24 Score=29.75 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=30.5
Q ss_pred CCcEEEEeccccc---------HHHHHHHHHhcCceEEEecCCCCh
Q psy9627 82 ENKTIIFAETKRK---------VDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 82 ~~~~iVF~nt~~~---------~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
..+++|||++..+ +.+++..|...|+.+..|.||+..
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~~ 128 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSS 128 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHHH
Confidence 4689999988776 357888899999999999998753
No 120
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=90.17 E-value=0.45 Score=32.05 Aligned_cols=49 Identities=10% Similarity=0.180 Sum_probs=35.9
Q ss_pred HHHHHHhhhcCCCCcEEEEecccc-cHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKR-KVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~-~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+...+..+...+..+++|||.+.. ++...+..|+..|++ +..|.||+..
T Consensus 69 ~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~ 119 (271)
T 1e0c_A 69 LESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTA 119 (271)
T ss_dssp HHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHH
T ss_pred HHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 333444431134578999998876 888999999999995 8899998654
No 121
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=90.07 E-value=1.4 Score=28.65 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=44.3
Q ss_pred cchHHH-HHHHHHhhhc-CCCCcEEEEecccccHHHHHHHHHhc-----CceEEEecCCCChhHHHHHH
Q psy9627 64 HEKENK-LFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 64 ~~k~~~-L~~ll~~~~~-~~~~~~iVF~nt~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l 125 (129)
.-|-.. +..++..+.. ....++||.|+|+.-++.+.+.++.. ++++..++|+.+..++...+
T Consensus 72 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 140 (230)
T 2oxc_A 72 TGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL 140 (230)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc
Confidence 345533 4444554322 23469999999999999988888763 78899999999887766554
No 122
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=89.96 E-value=0.29 Score=32.28 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=33.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
+..++++||++-.++...+..|+..|..+..|.|++..
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~~ 220 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMHE 220 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHHH
Confidence 45789999999999999999999999779999998764
No 123
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=89.79 E-value=0.47 Score=34.32 Aligned_cols=38 Identities=8% Similarity=0.176 Sum_probs=33.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCc-eEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 118 (129)
+..++++||.+..++...+..|+..|+ .+..|.|++..
T Consensus 202 ~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~ 240 (423)
T 2wlr_A 202 HDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQT 240 (423)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHH
T ss_pred CCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHH
Confidence 457899999999999999999999999 58999998754
No 124
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=89.71 E-value=0.6 Score=32.49 Aligned_cols=50 Identities=10% Similarity=0.207 Sum_probs=37.4
Q ss_pred HHHHHHHhhhcCCCCcEEEEecccc-cHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 69 KLFGLLNDISSKDENKTIIFAETKR-KVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 69 ~L~~ll~~~~~~~~~~~iVF~nt~~-~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
.+...+..+...+..+++|||++.. ++...+..|+..|+. +..|.|++..
T Consensus 98 ~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~ 149 (318)
T 3hzu_A 98 QFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRDL 149 (318)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCHHH
Confidence 3445555432235679999999876 788999999999995 9999998643
No 125
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.67 E-value=1.6 Score=30.49 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=37.4
Q ss_pred CCcEEEEecccccHHHHHHHHHhc-----CceEEEecCCCChhHHHHHHh
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~ 126 (129)
..++||.|+++.-++.+++.++.. ++.+..++|+.+..+....+.
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 125 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK 125 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh
Confidence 458999999999999888888764 789999999999877666554
No 126
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.63 E-value=0.83 Score=34.64 Aligned_cols=46 Identities=11% Similarity=0.202 Sum_probs=40.8
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
..+.+||.++++.-++...+.|+..|+++..++|+++..++..+++
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~ 128 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHA 128 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHH
Confidence 3579999999999999999999999999999999999988776553
No 127
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=89.48 E-value=0.29 Score=33.86 Aligned_cols=49 Identities=6% Similarity=-0.048 Sum_probs=36.8
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCc-eEEEecCCCCh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 118 (129)
+...+.........++++||.+-.++...+..|+..|+ .+..|-|++..
T Consensus 242 l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~ 291 (302)
T 3olh_A 242 IRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVE 291 (302)
T ss_dssp HHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHH
T ss_pred HHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHH
Confidence 44444432123457899999999999999999999999 58888888765
No 128
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=88.93 E-value=2.6 Score=27.64 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=37.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
...++||.|+|+.-++.+.+.++. .++.+..++|+.+.......+.
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 150 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE 150 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc
Confidence 356899999999999888777754 4899999999999887666554
No 129
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=88.61 E-value=0.31 Score=28.76 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=31.2
Q ss_pred CcEEEEecccccHHHHHHHHHhc------C-ceEEEecCCCChh
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNY------G-WAAVGIHGDKSQQ 119 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~------~-~~~~~lhg~~~~~ 119 (129)
.+++|+|.+..++...+..|... | ..+..|.|++..=
T Consensus 73 ~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W 116 (127)
T 3i2v_A 73 VPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAW 116 (127)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHH
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHH
Confidence 38999999999999999999887 3 4799999987653
No 130
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=88.34 E-value=1.1 Score=32.78 Aligned_cols=40 Identities=20% Similarity=0.386 Sum_probs=33.5
Q ss_pred CCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhHH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQER 121 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R 121 (129)
..++||.|+|+.-+....+.++.. ++.+..+||+.+...+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVS 95 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhh
Confidence 679999999999888877777654 8999999999976654
No 131
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=88.26 E-value=0.3 Score=36.54 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=37.8
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+...+..+....++.++||++|...++.+++.+.. +++ ..+|.. .+|.++++.|
T Consensus 372 ~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~~-~~q~~~--~~~~~~l~~f 425 (540)
T 2vl7_A 372 YSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IPV-IEENKK--TRHEEVLELM 425 (540)
T ss_dssp HHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SCE-EESTTT--CCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cce-EecCCC--CcHHHHHHHH
Confidence 44444444335678999999999999999998865 343 557665 4566676654
No 132
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=88.14 E-value=0.99 Score=30.45 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=34.9
Q ss_pred HHHHHHhhhcCCCCcEEEEeccc-ccHHHHHHHHHhcCc-eEEEecCCCCh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETK-RKVDKITKSIQNYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~-~~~~~l~~~L~~~~~-~~~~lhg~~~~ 118 (129)
+...+..+.-.+..+++|||++. ..+...+..|+..|+ .+..|.|++..
T Consensus 65 ~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~ 115 (277)
T 3aay_A 65 FSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKK 115 (277)
T ss_dssp HHHHHHHHTCCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHHH
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHHH
Confidence 44444443223457899999885 367888889999999 68899998654
No 133
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.95 E-value=3 Score=27.60 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=42.0
Q ss_pred cchHHH-HHHHHHhhhcC-CCCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhHHHHHH
Q psy9627 64 HEKENK-LFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 64 ~~k~~~-L~~ll~~~~~~-~~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l 125 (129)
.-|-.. +..+++.+... ...++||.++|+.-++.+++.++.. ++.+..++|+.+..+....+
T Consensus 91 sGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 158 (249)
T 3ber_A 91 SGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL 158 (249)
T ss_dssp SCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH
T ss_pred CCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh
Confidence 335432 33444433222 3458999999999998888777654 88999999999876655443
No 134
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=87.74 E-value=1.1 Score=35.34 Aligned_cols=46 Identities=9% Similarity=0.071 Sum_probs=38.1
Q ss_pred CCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
...+++|.++|+.-|+..++.++. .|+++..+||+++..+|...++
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~ 465 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKS 465 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHH
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHH
Confidence 357999999999988887777754 3899999999999998876654
No 135
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=87.63 E-value=0.29 Score=33.59 Aligned_cols=47 Identities=9% Similarity=0.031 Sum_probs=41.1
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+.+-+|||.|+...++.+.+.|+..|+.|. .|.+++.++-.+.|+.|
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~ 88 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQ-KFLHLSMHGISQILGQF 88 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEE-EEESCBHHHHHHHHHHH
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHH
Confidence 457899999999999999999999999985 56789999888888765
No 136
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=87.58 E-value=0.65 Score=31.52 Aligned_cols=49 Identities=6% Similarity=0.185 Sum_probs=35.7
Q ss_pred HHHHHHhhhcCCCCcEEEEecccc-cHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKR-KVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~-~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+...+..+...+..+++|||++.. .+...+..|+..|+. +..|.|++..
T Consensus 67 ~~~~~~~~gi~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~ 117 (285)
T 1uar_A 67 FAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQK 117 (285)
T ss_dssp HHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 334444332234578999998876 688899999999994 8899998754
No 137
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=87.57 E-value=1.9 Score=35.27 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=38.6
Q ss_pred CCCCcEEEEecccccHHHHHHHHHh---cCceEEEecCCCChhHHHHH
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~ 124 (129)
....++||.++|+.-|..+++.++. .++.+..+||+++..+|...
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~ 166 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKF 166 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHH
Confidence 3567999999999999999999988 57899999999998665443
No 138
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=87.25 E-value=3.5 Score=25.22 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=25.6
Q ss_pred CCcEEE-Ee-cccccHHHHH----HHHHhcCc---eEEEecCCCChh
Q psy9627 82 ENKTII-FA-ETKRKVDKIT----KSIQNYGW---AAVGIHGDKSQQ 119 (129)
Q Consensus 82 ~~~~iV-F~-nt~~~~~~l~----~~L~~~~~---~~~~lhg~~~~~ 119 (129)
..++|| +| .+..++...+ ..|...|+ .+..|.||+..=
T Consensus 67 ~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W 113 (152)
T 2j6p_A 67 KKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAF 113 (152)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHH
T ss_pred CCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHH
Confidence 344455 59 5655555444 78888896 688999997653
No 139
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=86.79 E-value=0.36 Score=33.62 Aligned_cols=38 Identities=11% Similarity=0.247 Sum_probs=32.9
Q ss_pred CCCcEEEEecccccHHHHHHHHHh-cCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN-YGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~-~~~~-~~~lhg~~~~ 118 (129)
...++|+||++-.++...+..|.+ .|++ +..|.|++..
T Consensus 258 ~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~~ 297 (318)
T 3hzu_A 258 PDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTE 297 (318)
T ss_dssp TTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHHH
T ss_pred CCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHHH
Confidence 457899999999999999999986 8995 8999998654
No 140
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=86.16 E-value=2.3 Score=31.60 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=39.2
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l 125 (129)
.+.+||.++++.-++...+.|+..|+++..+||+.+..++...+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~ 108 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVM 108 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 57899999999999999999999999999999999987766544
No 141
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=86.00 E-value=1.5 Score=30.00 Aligned_cols=49 Identities=4% Similarity=0.200 Sum_probs=34.5
Q ss_pred HHHHHHhhhcCCCCcEEEEecc--cc-cHHHHHHHHHhcCc-eEEEecCCCCh
Q psy9627 70 LFGLLNDISSKDENKTIIFAET--KR-KVDKITKSIQNYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt--~~-~~~~l~~~L~~~~~-~~~~lhg~~~~ 118 (129)
+...+..+.-.+..+++|||.+ .. .+...+..|+..|+ .+..|.|++..
T Consensus 80 ~~~~l~~lgi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~ 132 (296)
T 1rhs_A 80 FADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRN 132 (296)
T ss_dssp HHHHHHHTTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHH
T ss_pred HHHHHHHcCCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHH
Confidence 3334443222345789999987 44 48888999999998 58899998754
No 142
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=85.93 E-value=1.8 Score=31.83 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=30.1
Q ss_pred CCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhHH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQER 121 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R 121 (129)
..++||.|+|+.-+....+.++.. ++.+..+||+.+...+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 98 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS 98 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchh
Confidence 678999999999888888777664 8999999999976553
No 143
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=85.81 E-value=0.95 Score=32.72 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=32.8
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCc-eEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 118 (129)
+..++++||.+-.++...+..|+..|+ .+..|.|++..
T Consensus 357 ~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~~ 395 (423)
T 2wlr_A 357 PEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYE 395 (423)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHHH
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHHH
Confidence 457899999999999999999999999 58889888643
No 144
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=85.75 E-value=1.9 Score=30.70 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=30.5
Q ss_pred CCCCcEEEEe-cccccH-HHHHHHHHhcCceEEEecCCCCh
Q psy9627 80 KDENKTIIFA-ETKRKV-DKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 80 ~~~~~~iVF~-nt~~~~-~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
.+..+++||| .+-.++ ...+..|+..|+++..|.||+..
T Consensus 93 ~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~a 133 (373)
T 1okg_A 93 AGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQA 133 (373)
T ss_dssp SSSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHHH
Confidence 3557899999 555344 47888899999999999999865
No 145
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=85.65 E-value=1.8 Score=26.57 Aligned_cols=39 Identities=5% Similarity=0.108 Sum_probs=29.0
Q ss_pred CCCcEEEEec-ccccHHHHHHHHH--------hcCc-eEEEecCCCChh
Q psy9627 81 DENKTIIFAE-TKRKVDKITKSIQ--------NYGW-AAVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~n-t~~~~~~l~~~L~--------~~~~-~~~~lhg~~~~~ 119 (129)
+..+++|||+ +..++...+..|. ..|+ ++..|.|++..=
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W 132 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGW 132 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHH
Confidence 4568999998 7777666666653 4788 689999998653
No 146
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=85.64 E-value=0.6 Score=34.75 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=34.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
+..++++||++..++...+..|+..|+++..|.|++..
T Consensus 523 ~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~~ 560 (565)
T 3ntd_A 523 KDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYRT 560 (565)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHHH
T ss_pred CcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHHH
Confidence 44689999999999999999999999999999998754
No 147
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.55 E-value=2.8 Score=27.27 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=34.1
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhHHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l 125 (129)
...++||.++|+.-++..++.++.. ++.+..++|+.+.......+
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 144 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI 144 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC
Confidence 3568999999999999888888764 48899999998876554433
No 148
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=85.43 E-value=1.8 Score=32.30 Aligned_cols=38 Identities=8% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecC-CCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG-DKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg-~~~~ 118 (129)
+..+++|+|.+..++...+..|+..|+.+..|.| ++..
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~~ 359 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEAD 359 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGGG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChHH
Confidence 3578999999999999999999999999999999 8743
No 149
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=84.70 E-value=3.4 Score=29.35 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=37.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc-Cc---eEEEecCCCChhHHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY-GW---AAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~-~~---~~~~lhg~~~~~~R~~~l 125 (129)
...++||.|+++.-++...+.++.. ++ .+..+||+.+..++....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 99 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW 99 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc
Confidence 5679999999999998888888764 66 899999999988776544
No 150
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=84.55 E-value=3 Score=26.90 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=31.8
Q ss_pred CCCcEEEEecccccHHHHHHHHHh---cCceEEEecCCCChhHHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~l 125 (129)
...++||.++|+.-++.+.+.++. .++.+..++|+.+..++...+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI 140 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh
Confidence 457899999999999999988877 478899999998876554443
No 151
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=84.40 E-value=2.4 Score=33.21 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=30.3
Q ss_pred CCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhHH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQER 121 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R 121 (129)
.+++||.|+|+.-+....+.++.. ++++..+||+.+...+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 339 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS 339 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhh
Confidence 679999999999988877777664 8999999999976654
No 152
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=84.22 E-value=2.8 Score=27.41 Aligned_cols=33 Identities=6% Similarity=0.044 Sum_probs=29.5
Q ss_pred CCcEEEEecccc-cHHHHHHHHHhcCce-EEEecCC
Q psy9627 82 ENKTIIFAETKR-KVDKITKSIQNYGWA-AVGIHGD 115 (129)
Q Consensus 82 ~~~~iVF~nt~~-~~~~l~~~L~~~~~~-~~~lhg~ 115 (129)
..+++|||++.. .+..++..|+ .|++ +..|.|+
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 578999999988 8999999999 9995 8899998
No 153
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=84.15 E-value=3.1 Score=26.23 Aligned_cols=45 Identities=9% Similarity=0.219 Sum_probs=36.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc--CceEEEecCCCChhHHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l 125 (129)
...+++|.|+|+.-++.+.+.++.. ++++..++|+.+..+....+
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL 117 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh
Confidence 4568999999999999999998775 57899999998866554433
No 154
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=83.73 E-value=0.82 Score=34.33 Aligned_cols=39 Identities=8% Similarity=0.080 Sum_probs=34.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
+..++++||++..++...+..|+..|+++..|.|++..=
T Consensus 540 ~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~~w 578 (588)
T 3ics_A 540 VDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFKLY 578 (588)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHHHH
Confidence 456899999999999999999999999999999998653
No 155
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=83.65 E-value=1.9 Score=27.55 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=36.4
Q ss_pred CCcEEEEeccc-----------ccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 82 ENKTIIFAETK-----------RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 82 ~~~~iVF~nt~-----------~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+.+||+.|.. ..++.+.+.|+..|+.|. .+-+++..+-.++++.|
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f 99 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAF 99 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHH
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHH
Confidence 45688888763 678889999999999985 66778888888777765
No 156
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.08 E-value=6.3 Score=24.77 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=38.8
Q ss_pred HHHHHHhhhc-CCCCcEEEEecccccHHHHHHHHHhc-----CceEEEecCCCChhHHHHH
Q psy9627 70 LFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 70 L~~ll~~~~~-~~~~~~iVF~nt~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~ 124 (129)
+..++..+.. ....++||.|+|+.-++.+++.++.. ++.+..++|+.+..+....
T Consensus 58 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 118 (206)
T 1vec_A 58 LIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 118 (206)
T ss_dssp HHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH
T ss_pred HHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh
Confidence 3344443322 23458999999999999888887653 6889999999887665443
No 157
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=83.01 E-value=0.9 Score=32.45 Aligned_cols=38 Identities=8% Similarity=-0.042 Sum_probs=33.5
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChh
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQ 119 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~ 119 (129)
..++++||.+-.++...+..|+..|++ +..|.|++..=
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W 284 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEY 284 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHHH
Confidence 568999999999999999999999995 89999987653
No 158
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=82.98 E-value=1.6 Score=29.84 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=37.9
Q ss_pred CCCcEEEEec---------------------ccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAE---------------------TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~n---------------------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+.+-+|||.| +...++.+.+.|+..|+.|. .+-+++.++-.++|+.|
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~ 83 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIY 83 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHH
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHH
Confidence 4578888887 34578889999999999975 66789999888888765
No 159
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=82.61 E-value=2.8 Score=26.93 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=35.9
Q ss_pred cchHHH-HHHHHHhhhc-CCCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHH
Q psy9627 64 HEKENK-LFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 64 ~~k~~~-L~~ll~~~~~-~~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~ 123 (129)
.-|-.. +..+++.+.. ....++||.++++.-++.+.+.++. .++.+..++|+.+..+...
T Consensus 62 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (224)
T 1qde_A 62 TGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE 127 (224)
T ss_dssp SSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC---------
T ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh
Confidence 345543 4455554422 2346999999999999888887765 3788999999987665443
No 160
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=82.09 E-value=2 Score=32.09 Aligned_cols=39 Identities=8% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCc-eEEEecCCCCh
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 118 (129)
.+..+++|||++...+...+..|+..|+ .+..|.||+..
T Consensus 61 ~~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~~~ 100 (539)
T 1yt8_A 61 RRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSG 100 (539)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCHHH
Confidence 3567999999998899999999999999 48899998654
No 161
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=81.86 E-value=2 Score=29.90 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=38.4
Q ss_pred CcEEEEecc-----------cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 83 NKTIIFAET-----------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 83 ~~~iVF~nt-----------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+-+|||+|. ...++.+.+.|+..|+.|. .+-+++..+-.++|+.|
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f 116 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAF 116 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHH
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHH
Confidence 469999988 5678899999999999975 67789999988888776
No 162
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=81.15 E-value=0.63 Score=31.46 Aligned_cols=25 Identities=8% Similarity=-0.209 Sum_probs=19.8
Q ss_pred hhhhhccCCCCceEEEEEecCcHHH
Q psy9627 3 WASRAMTYKPDRQVLMWSATWPREV 27 (129)
Q Consensus 3 ~~~il~~l~~~~Q~ll~SAT~~~~v 27 (129)
+..+++.+++.+|++++|||.+...
T Consensus 242 ~~~il~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 242 ISSIISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp HHHHTTTCTTCCEEEEECSSCCTTS
T ss_pred HHHHHHHhhcCCeEEEEeCCCCCcc
Confidence 4567788877899999999987553
No 163
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=80.95 E-value=3.1 Score=28.60 Aligned_cols=49 Identities=6% Similarity=0.151 Sum_probs=34.9
Q ss_pred HHHHHHhhhcCCCCcEEEEecc---cccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 70 LFGLLNDISSKDENKTIIFAET---KRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt---~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+...+..+...+..+++|||.+ ...+.+++..|+..|++ +..|.|++..
T Consensus 95 ~~~~~~~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~ 147 (302)
T 3olh_A 95 FAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRH 147 (302)
T ss_dssp HHHHHHHTTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHH
T ss_pred HHHHHHHcCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHH
Confidence 4444544322455789999964 34588899999999985 8889998654
No 164
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=80.68 E-value=1.2 Score=27.56 Aligned_cols=38 Identities=5% Similarity=0.221 Sum_probs=28.9
Q ss_pred CCcE--EEEec-ccccHHHHHHHHHhc----------Cc-eEEEecCCCChh
Q psy9627 82 ENKT--IIFAE-TKRKVDKITKSIQNY----------GW-AAVGIHGDKSQQ 119 (129)
Q Consensus 82 ~~~~--iVF~n-t~~~~~~l~~~L~~~----------~~-~~~~lhg~~~~~ 119 (129)
..++ +++|+ +..++...+..|+.. |+ .+..|.||+..=
T Consensus 87 ~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W 138 (161)
T 1c25_A 87 GKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEF 138 (161)
T ss_dssp TSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHH
T ss_pred CCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHH
Confidence 3454 45798 888898999988753 87 699999997653
No 165
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=80.22 E-value=0.94 Score=33.15 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=33.4
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
+..++++||++-.++...+..|+..|++ +..|.|++..
T Consensus 426 ~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~~ 464 (474)
T 3tp9_A 426 RDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEA 464 (474)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 4578999999999999999999999995 9999998764
No 166
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=79.88 E-value=8.9 Score=26.19 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=42.4
Q ss_pred cchHHH-HHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHH
Q psy9627 64 HEKENK-LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 64 ~~k~~~-L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l 125 (129)
.-|-.. +..++..+...+..++||.|+++.-++.+++.++. .++.+..++|+.+..+....+
T Consensus 55 sGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 121 (367)
T 1hv8_A 55 SGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL 121 (367)
T ss_dssp SSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc
Confidence 335433 33344433223467999999999998888888865 378899999998876654443
No 167
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=79.49 E-value=2.4 Score=29.66 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=39.7
Q ss_pred CCCcEEEEeccc------------ccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 81 DENKTIIFAETK------------RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 81 ~~~~~iVF~nt~------------~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
+.+-+|||.|.. ..++.+.+.|+..|+.| ..|-+++..+-.++|+.|+
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~ 119 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTI-FPYGNVNQDQFFKLLTMVT 119 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEE-EEECSCCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEccCCCHHHHHHHHHHHH
Confidence 457889998763 67889999999999997 4778999999888887763
No 168
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=79.45 E-value=9 Score=23.89 Aligned_cols=86 Identities=12% Similarity=0.161 Sum_probs=49.7
Q ss_pred cHHHHHHHHHhccCccEEEeCCCCcccCCCceEEEEEcCc-cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHH
Q psy9627 24 PREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAE-HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102 (129)
Q Consensus 24 ~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L 102 (129)
|.+|-+++..++.+...+..... .+-.-.+..+.+ .+-...+...++. .....+.+-|.|.+...++.+.+.|
T Consensus 8 t~~Il~~An~li~~~~~~~~~~~-----~G~~p~~~~~~~~~~e~~~i~~~I~~-~~~g~~~iAVL~r~~~~~~~l~~~L 81 (174)
T 3dmn_A 8 TQQITDFTKEILVNGEAVTAFDR-----QGDLPNVVVTPNFEAGVDQVVDQLAM-NDSERDTTAIIGKSLAECEALTKAL 81 (174)
T ss_dssp CHHHHHHHHTTSCC--------C-----CCCCCEEEEESSHHHHHHHHHHHHHH-HHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCcccCCCC-----CCCCCEEEEeCCHHHHHHHHHHHHHH-hccCCCcEEEEecCHHHHHHHHHHH
Confidence 46677777777653222211111 111223444443 3334445555544 2234678889999999999999999
Q ss_pred HhcCceEEEecCC
Q psy9627 103 QNYGWAAVGIHGD 115 (129)
Q Consensus 103 ~~~~~~~~~lhg~ 115 (129)
...|+++..+.++
T Consensus 82 ~~~gi~~~~l~~~ 94 (174)
T 3dmn_A 82 KARGEQVTLIQTE 94 (174)
T ss_dssp HTTTCCEEECSSC
T ss_pred HHcCCcceeeccc
Confidence 9988888766553
No 169
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=78.13 E-value=13 Score=25.76 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=42.0
Q ss_pred hHHH-HHHHHHhhhcC-CCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHH
Q psy9627 66 KENK-LFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 66 k~~~-L~~ll~~~~~~-~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l 125 (129)
|-.. +..+++.+... ...++||.|+++.-++...+.+.. .++.+..++|+.+..+....+
T Consensus 71 KT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 136 (394)
T 1fuu_A 71 KTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL 136 (394)
T ss_dssp HHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhc
Confidence 5433 44444443222 346999999999999888887765 478999999999887665543
No 170
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=77.45 E-value=7.1 Score=21.61 Aligned_cols=46 Identities=7% Similarity=0.267 Sum_probs=35.1
Q ss_pred HHHHHHhhhcCCCCcEEEEec--ccccHHHHHHHHHhcCceEEEecCCC
Q psy9627 70 LFGLLNDISSKDENKTIIFAE--TKRKVDKITKSIQNYGWAAVGIHGDK 116 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~n--t~~~~~~l~~~L~~~~~~~~~lhg~~ 116 (129)
+.++++... .+..+.+||+| ++..+.++...-++.|.....+.+.-
T Consensus 40 irdiiksmk-dngkplvvfvngasqndvnefqneakkegvsydvlkstd 87 (112)
T 2lnd_A 40 IRDIIKSMK-DNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTD 87 (112)
T ss_dssp HHHHHHHHT-TCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred HHHHHHHHH-hcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCC
Confidence 556777653 46789999996 56777888888888899888887753
No 171
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=77.39 E-value=3.4 Score=26.03 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=35.6
Q ss_pred CCCcEEEEecc---------------------cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAET---------------------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt---------------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+.+-+|||.|. ...++.+.+.|+..|+.| ..|-+++..+-.+.|+.|
T Consensus 22 ~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~ 89 (164)
T 1qtn_A 22 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIY 89 (164)
T ss_dssp SCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHH
T ss_pred CceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHH
Confidence 45778888773 466778888888899988 467788888877777654
No 172
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=76.97 E-value=8.6 Score=27.61 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=36.3
Q ss_pred CCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHh
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
..++||.++|++-|..+++.+++ .++.+..++|+.+.......+.
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~ 177 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 177 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHT
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhh
Confidence 45899999999999998888875 3678999999998876555443
No 173
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=76.86 E-value=3.7 Score=28.11 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=36.9
Q ss_pred CCCcEEEEeccc--------------ccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETK--------------RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~--------------~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+.+-+|||+|.. ..++.+.+.|+..|+.|. .+-+++..+-.++|+.|
T Consensus 20 ~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~ 80 (278)
T 3od5_A 20 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEV 80 (278)
T ss_dssp BCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHH
T ss_pred CcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHH
Confidence 446788888753 568889999999999975 56789988888877764
No 174
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=76.79 E-value=4.8 Score=25.80 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=36.7
Q ss_pred CCCcEEEEeccc--------------ccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETK--------------RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~--------------~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+.+-+|||.|.. ..++.|.+.|+..|+.|. .|-+++.++-.+.|+.+
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~-~~~dlt~~em~~~l~~~ 103 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEV 103 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHH
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHH
Confidence 446789998853 468889999999999986 55678888888777654
No 175
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=76.41 E-value=13 Score=24.64 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=36.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l 125 (129)
...++||.++|+.-|+..++.++. .++.+..+.|+.+.......+
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 173 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 173 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh
Confidence 356899999999999998888876 467889999998877655443
No 176
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=76.24 E-value=3.7 Score=25.92 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=37.1
Q ss_pred CCCcEEEEeccc--------------ccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETK--------------RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~--------------~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+.+-+|||.|.. ..++.+.+.|+..|+.| ..|.+++.++-.+.++.|
T Consensus 32 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~ 92 (167)
T 1pyo_A 32 PRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDV-HVLCDQTAQEMQEKLQNF 92 (167)
T ss_dssp SSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHH
T ss_pred CceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHh
Confidence 457888988762 26788999999999998 567888988888877765
No 177
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=75.51 E-value=14 Score=24.09 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=34.2
Q ss_pred CcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHH
Q psy9627 83 NKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l 125 (129)
.++||.|+|+.-+..+.+.++. .++.+..++|+.+..+....+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 147 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV 147 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh
Confidence 5899999999999988887765 367899999998876654443
No 178
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=75.35 E-value=3.4 Score=28.19 Aligned_cols=46 Identities=15% Similarity=0.339 Sum_probs=36.0
Q ss_pred CCcEEEEecc-------------cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 82 ENKTIIFAET-------------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 82 ~~~~iVF~nt-------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+-+|||.|. ...++.+.+.|+..|+.|. .+-+++..+-.++|+.|
T Consensus 32 rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~ 90 (272)
T 1m72_A 32 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQT 90 (272)
T ss_dssp EEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHH
T ss_pred CCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHH
Confidence 3567777764 6678889999999999875 66788988888888765
No 179
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=75.33 E-value=1.4 Score=26.82 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=26.3
Q ss_pred CCCcEEEEecccccH----------HHHHHHHHhcCceEEEecCCCChh
Q psy9627 81 DENKTIIFAETKRKV----------DKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~----------~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
+..+++|||.+..+. .++...+...|+++..|.||+..=
T Consensus 91 ~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~v~~L~GG~~~W 139 (154)
T 1hzm_A 91 GTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGGFSKF 139 (154)
T ss_dssp TSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCCCEECCCCHHHH
T ss_pred CCCeEEEEeCCCCccccccccchHHHHHHHHHHHCCCceEEEcChHHHH
Confidence 346899999765332 334444445588899999998664
No 180
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=75.24 E-value=3.9 Score=28.55 Aligned_cols=48 Identities=15% Similarity=0.335 Sum_probs=38.7
Q ss_pred CCCcEEEEecc-------------cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 81 DENKTIIFAET-------------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 81 ~~~~~iVF~nt-------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
+.+-+|||.|. ...++.+.+.|+..|+.|. .+-+++..+-.++|+.|+
T Consensus 59 ~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~ 119 (310)
T 2nn3_C 59 HRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTA 119 (310)
T ss_dssp BCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHH
T ss_pred CcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHH
Confidence 45678898875 6678899999999999985 667899999888887663
No 181
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=75.05 E-value=3 Score=25.71 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=32.6
Q ss_pred CCcEEEEec--------------ccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 82 ENKTIIFAE--------------TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 82 ~~~~iVF~n--------------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+-+|||.| |...++.+.+.++..|+.|. .|.+++.++-.+.++.|
T Consensus 16 rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~ 75 (146)
T 2dko_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDV 75 (146)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHH
T ss_pred ceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHH
Confidence 456777766 33466778888888888864 56678888877777655
No 182
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=75.01 E-value=4.4 Score=32.45 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=29.6
Q ss_pred CCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQE 120 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~ 120 (129)
..++||.|+|+.-+....+.++.. ++++..+||+.+...
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~ 338 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNV 338 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhh
Confidence 678999999998888877777664 899999999986654
No 183
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=74.62 E-value=9.7 Score=21.75 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=32.1
Q ss_pred CCCcEEEEec------ccccHHHHHHHHHhcCceEEEecCCCChhHHHH
Q psy9627 81 DENKTIIFAE------TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 81 ~~~~~iVF~n------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 123 (129)
...+++||.. .+-.|...-+.|...|++...+.=..+...|..
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~ 64 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQG 64 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHH
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHH
Confidence 4568999997 499999999999999988766654444444444
No 184
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=74.12 E-value=11 Score=24.66 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKS 117 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~ 117 (129)
.-|-.....++.. ...+++|+|+++.-++.+.+.+...++. +..++|+..
T Consensus 119 ~GKT~~a~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 119 SGKTHVAMAAINE----LSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (237)
T ss_dssp TTHHHHHHHHHHH----SCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB
T ss_pred CCHHHHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 3365444444443 2679999999999999999999888888 999998754
No 185
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=73.85 E-value=11 Score=30.07 Aligned_cols=45 Identities=7% Similarity=-0.012 Sum_probs=36.9
Q ss_pred CCCcEEEEecccccHHHHHHHHH----hcCceEEEecCCCChhHHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQ----NYGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~l 125 (129)
...+++|.|+|+.-|...++.+. ..|+.+.++.|+++.++|....
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~ 171 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY 171 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc
Confidence 35689999999999987777764 4599999999999998876653
No 186
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=73.68 E-value=3.5 Score=26.80 Aligned_cols=37 Identities=11% Similarity=0.276 Sum_probs=28.3
Q ss_pred CCcE--EEEec-ccccHHHHHHHHHh----------cCc-eEEEecCCCCh
Q psy9627 82 ENKT--IIFAE-TKRKVDKITKSIQN----------YGW-AAVGIHGDKSQ 118 (129)
Q Consensus 82 ~~~~--iVF~n-t~~~~~~l~~~L~~----------~~~-~~~~lhg~~~~ 118 (129)
..++ |+||+ +..++...+..|+. .|+ .+..|.||+..
T Consensus 109 d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~ 159 (211)
T 1qb0_A 109 DKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKE 159 (211)
T ss_dssp TSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHH
T ss_pred CCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHH
Confidence 3565 67899 88888888888875 587 58899998643
No 187
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=73.54 E-value=9.5 Score=24.34 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=37.9
Q ss_pred hHHH-HHHHHHhhhcC-CCCcEEEEecccccHHHHHHHHHhc--------CceEEEecCCCChhH
Q psy9627 66 KENK-LFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQNY--------GWAAVGIHGDKSQQE 120 (129)
Q Consensus 66 k~~~-L~~ll~~~~~~-~~~~~iVF~nt~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~ 120 (129)
|-.. +..++..+... ...+++|.|+|+.-++.+++.++.. ++.+..++|+.+..+
T Consensus 54 KT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 118 (219)
T 1q0u_A 54 KTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK 118 (219)
T ss_dssp HHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHH
T ss_pred HHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHH
Confidence 5433 44444443222 3468999999999998888877653 688999999976554
No 188
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=73.49 E-value=7.4 Score=24.05 Aligned_cols=36 Identities=8% Similarity=0.250 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHH
Q psy9627 66 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102 (129)
Q Consensus 66 k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L 102 (129)
+....++|+++.. ....+++|.|.+.+.++.+-+.|
T Consensus 24 ~~~~aCrL~~ka~-~~G~rv~V~~~d~~~a~~LD~~L 59 (150)
T 3sxu_A 24 VEQLVCEIAAERW-RSGKRVLIACEDEKQAYRLDEAL 59 (150)
T ss_dssp HHHHHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HcCCeEEEECCCHHHHHHHHHHH
Confidence 5667788887664 35689999999999999999998
No 189
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=73.31 E-value=3.2 Score=28.11 Aligned_cols=36 Identities=6% Similarity=0.166 Sum_probs=27.9
Q ss_pred cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 92 KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 92 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
...++.+.+.|+..|+.|. .+-+++.++-.++|+.|
T Consensus 43 ~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~ 78 (259)
T 3sir_A 43 NVDCENLTRVLKQLDFEVT-VYKDCRYKDILRTIEYS 78 (259)
T ss_dssp CCHHHHHHHHHHHTTCEEE-EEEECSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHH
Confidence 4668888888888898864 66688888877777765
No 190
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=72.45 E-value=11 Score=21.62 Aligned_cols=44 Identities=5% Similarity=0.015 Sum_probs=33.0
Q ss_pred CCCcEEEEe------cccccHHHHHHHHHhcCceEEEecCCCChhHHHHH
Q psy9627 81 DENKTIIFA------ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 81 ~~~~~iVF~------nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 124 (129)
...+++||. +++-.|...-+.|...|++...+.=..+...|...
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l 63 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGL 63 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHH
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHH
Confidence 467999999 57888999999999999887766544455555443
No 191
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=71.75 E-value=11 Score=24.44 Aligned_cols=56 Identities=18% Similarity=0.317 Sum_probs=34.3
Q ss_pred hHHH-HHHHHHhhhcC-CCCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhHH
Q psy9627 66 KENK-LFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQER 121 (129)
Q Consensus 66 k~~~-L~~ll~~~~~~-~~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R 121 (129)
|-.. +..+++.+... ...++||.++|+.-+..+++.++.. ++.+..++|+.+....
T Consensus 80 KT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 141 (237)
T 3bor_A 80 KTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE 141 (237)
T ss_dssp HHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH
Confidence 5433 44444443222 3469999999999999888888654 6788889998765443
No 192
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=71.70 E-value=14 Score=29.84 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=36.5
Q ss_pred CCCcEEEEecccccHHHHHHHHH----hcCceEEEecCCCChhHHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQ----NYGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~l 125 (129)
...+++|-|+|+.-|...++.+. ..|+.+.++.|+++.++|....
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y 199 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY 199 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc
Confidence 35689999999998877776664 4699999999999998877654
No 193
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}
Probab=71.56 E-value=2.8 Score=27.57 Aligned_cols=35 Identities=6% Similarity=0.174 Sum_probs=27.0
Q ss_pred cEEEEec-ccccHHHHHHHHHhc----------Cc-eEEEecCCCCh
Q psy9627 84 KTIIFAE-TKRKVDKITKSIQNY----------GW-AAVGIHGDKSQ 118 (129)
Q Consensus 84 ~~iVF~n-t~~~~~~l~~~L~~~----------~~-~~~~lhg~~~~ 118 (129)
.++++|. +..++...+..|+.. |+ .+..|.||+..
T Consensus 126 ~VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~a 172 (216)
T 3op3_A 126 IIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRD 172 (216)
T ss_dssp EEEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHH
T ss_pred EEEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHH
Confidence 3889999 999999999988875 66 58999998754
No 194
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=71.07 E-value=5.6 Score=27.12 Aligned_cols=47 Identities=11% Similarity=0.179 Sum_probs=36.9
Q ss_pred CCCcEEEEeccc--------------ccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 81 DENKTIIFAETK--------------RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 81 ~~~~~iVF~nt~--------------~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
+.+-+|||.|.. ..++.+.+.|+..|+.|. .|-+++.++-.++|+.|
T Consensus 20 ~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~ 80 (277)
T 1nw9_B 20 PCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVE-VKGDLTAKKMVLALLEL 80 (277)
T ss_dssp SCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHH
T ss_pred cccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EEcCCCHHHHHHHHHHH
Confidence 457788887762 378889999999999874 67789988888888765
No 195
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=71.00 E-value=7.8 Score=29.49 Aligned_cols=37 Identities=22% Similarity=0.479 Sum_probs=31.3
Q ss_pred CcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChh
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQ 119 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~ 119 (129)
+++||.++|+.-+....+.++.. ++++..++|+.+..
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~ 102 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAEN 102 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSS
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCcccc
Confidence 79999999998888887777654 89999999998654
No 196
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=70.90 E-value=13 Score=26.11 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=35.1
Q ss_pred CcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHH
Q psy9627 83 NKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l 125 (129)
.++||.++|+.-+..+++.++. .++.+..++|+.+..+....+
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 148 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL 148 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh
Confidence 5799999999999988888765 478899999999877655544
No 197
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=70.79 E-value=15 Score=29.31 Aligned_cols=44 Identities=2% Similarity=-0.111 Sum_probs=35.9
Q ss_pred CCCcEEEEecccccHHHHHHHHH----hcCceEEEecCCCChhHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQ----NYGWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~ 124 (129)
...+++|-|+|+.-|...++.+. ..|+.+.++.|+++.++|...
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~ 161 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREA 161 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHh
Confidence 35689999999998887777664 459999999999998877654
No 198
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=70.70 E-value=4.4 Score=29.26 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=38.7
Q ss_pred chHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 65 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 65 ~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
=|-.....++... ..++||.|+++.-+....+.+...|++ +..+||+.+.
T Consensus 120 GKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~ 170 (472)
T 2fwr_A 120 GKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE 170 (472)
T ss_dssp CHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC
T ss_pred CHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC
Confidence 3554433444432 579999999999999999999888999 9999998753
No 199
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=70.51 E-value=11 Score=25.52 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=36.0
Q ss_pred CCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l 125 (129)
..++||.|+++.-++..++.++. .++++..+||+.+..+....+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV 103 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc
Confidence 67899999999999988888874 368899999999887655443
No 200
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=70.35 E-value=4.3 Score=24.25 Aligned_cols=38 Identities=8% Similarity=0.070 Sum_probs=31.4
Q ss_pred cccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhc
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKV 127 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~ 127 (129)
.+++.|..+-..|...|++...+-=++++..|.+..+.
T Consensus 14 ~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~ 51 (121)
T 1u6t_A 14 AIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMREN 51 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHh
Confidence 34555689999999999999988888999999887754
No 201
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=69.35 E-value=0.97 Score=33.16 Aligned_cols=38 Identities=3% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCc-eEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGW-AAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~-~~~~lhg~~~~ 118 (129)
+..++++||.+..++...+..|+..|+ .+..|-|++..
T Consensus 424 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 462 (466)
T 3r2u_A 424 KNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYKD 462 (466)
T ss_dssp ---------------------------------------
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 346899999999999999999999998 68889998864
No 202
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=68.00 E-value=14 Score=20.90 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=31.8
Q ss_pred CCcEEEEec------ccccHHHHHHHHHhcCceEEEecCCCChhHHHHH
Q psy9627 82 ENKTIIFAE------TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 82 ~~~~iVF~n------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 124 (129)
..+++||.. ++-.|..+...|...|++...+.=..+...|...
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l 62 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGL 62 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHH
Confidence 446888876 6778889999999888888777766665555443
No 203
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=67.61 E-value=14 Score=20.62 Aligned_cols=44 Identities=7% Similarity=0.050 Sum_probs=30.3
Q ss_pred CcEEEEe-cccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 83 NKTIIFA-ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 83 ~~~iVF~-nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.++.||. +++-.|...-+.|++.|++...+-=+.++..|....+
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~ 48 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGS 48 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHH
Confidence 3566776 5577777777778777777777766666666666544
No 204
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=66.94 E-value=7.9 Score=25.97 Aligned_cols=46 Identities=11% Similarity=0.147 Sum_probs=35.8
Q ss_pred CCcEEEEecc--------------cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 82 ENKTIIFAET--------------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 82 ~~~~iVF~nt--------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+-+||+.|. ...++.+.+.|+..|+.|. .+-+++..+-.++++.|
T Consensus 16 rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~-~~~dlt~~em~~~l~~~ 75 (250)
T 2j32_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDV 75 (250)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHH
T ss_pred ccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHH
Confidence 3567787763 3378889999999999975 67788998888888765
No 205
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=66.86 E-value=29 Score=24.11 Aligned_cols=60 Identities=12% Similarity=0.217 Sum_probs=40.4
Q ss_pred cchHH-HHHHHHHhhhcC-CCCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhHHHH
Q psy9627 64 HEKEN-KLFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 64 ~~k~~-~L~~ll~~~~~~-~~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~ 123 (129)
.-|-. ++..++..+... ...+++|.|+++.-++..++.++.. ++.+..++|+....+...
T Consensus 69 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 134 (400)
T 1s2m_A 69 TGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL 134 (400)
T ss_dssp SCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH
Confidence 33543 234444433222 3458999999999998888877653 788999999988765433
No 206
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=66.02 E-value=20 Score=29.12 Aligned_cols=45 Identities=9% Similarity=0.047 Sum_probs=36.8
Q ss_pred CCCcEEEEecccccHHHHHHHHH----hcCceEEEecCCCChhHHHHHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQ----NYGWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~l 125 (129)
...+++|-++|+.-|...++.+. ..|+.+.++.|+++.++|....
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay 167 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY 167 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc
Confidence 35689999999988887776664 4699999999999988877654
No 207
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=65.80 E-value=17 Score=25.45 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=43.1
Q ss_pred cchHH-HHHHHHHhhhc-CCCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHh
Q psy9627 64 HEKEN-KLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 64 ~~k~~-~L~~ll~~~~~-~~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.-|-. ++..+++.+.. ....++||.|+|+.-+..+++.++. .++.+..++|+.+..+....+.
T Consensus 85 sGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 153 (410)
T 2j0s_A 85 TGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 153 (410)
T ss_dssp SSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh
Confidence 33553 33344443321 2457999999999999988888765 3688999999998776655443
No 208
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=65.28 E-value=16 Score=20.46 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=29.7
Q ss_pred CCcEEEEe------cccccHHHHHHHHHhcCceEEEecCCCChhHHHH
Q psy9627 82 ENKTIIFA------ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 82 ~~~~iVF~------nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 123 (129)
..+++||. +.+..|..+...|...+++...+.=+.++..|..
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~ 63 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQG 63 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHH
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHH
Confidence 34688887 4678888888889888887766655555544443
No 209
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A
Probab=65.00 E-value=5 Score=25.01 Aligned_cols=37 Identities=11% Similarity=0.298 Sum_probs=26.9
Q ss_pred CCcEEE--Eec-ccccHHHHHHHHHh----------cCc-eEEEecCCCCh
Q psy9627 82 ENKTII--FAE-TKRKVDKITKSIQN----------YGW-AAVGIHGDKSQ 118 (129)
Q Consensus 82 ~~~~iV--F~n-t~~~~~~l~~~L~~----------~~~-~~~~lhg~~~~ 118 (129)
..+++| +|. +..++...+..|+. .|+ .+..|.||+..
T Consensus 89 ~~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~ 139 (175)
T 2a2k_A 89 DKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKE 139 (175)
T ss_dssp -CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHH
T ss_pred CCCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHH
Confidence 356644 488 88888888888875 387 68899998653
No 210
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=64.02 E-value=21 Score=29.15 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh----cCc----eEEEecCCCChhHHHHHHh
Q psy9627 66 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQN----YGW----AAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 66 k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~----~~~----~~~~lhg~~~~~~R~~~l~ 126 (129)
|-....-++..+. ....++||.++|+.-|..+++.++. .++ .+..+||+.+..++.+..+
T Consensus 84 KTl~~lp~l~~~~-~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~ 151 (1054)
T 1gku_B 84 KTSFGLAMSLFLA-LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQ 151 (1054)
T ss_dssp SHHHHHHHHHHHH-TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHh
Confidence 5433333443332 2467999999999999988888864 366 8999999999988655443
No 211
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=63.90 E-value=5.4 Score=25.39 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=24.5
Q ss_pred ccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 93 RKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 93 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..++.+.+.|+..|+.|. .|-+++..+-.+.|+.+
T Consensus 69 ~D~~~L~~~F~~LgF~V~-v~~dlt~~em~~~l~~~ 103 (173)
T 2ql9_A 69 KDAEALFKCFRSLGFDVI-VYNDCSCAKMQDLLKKA 103 (173)
T ss_dssp HHHHHHHHHHHHHTEEEE-EEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHH
Confidence 446678888888888874 55577777766666654
No 212
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=63.48 E-value=2.5 Score=20.44 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=14.9
Q ss_pred EecCCCChhHHHHHHhcC
Q psy9627 111 GIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 111 ~lhg~~~~~~R~~~l~~~ 128 (129)
.-||+||-.+-+++.+.|
T Consensus 3 ~~hG~MD~~~hE~Ty~gF 20 (43)
T 1qle_D 3 HKHGEMDIRHQQATFAGF 20 (43)
T ss_dssp CCTTCSCCHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHH
Confidence 358999999999888765
No 213
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=63.34 E-value=16 Score=23.77 Aligned_cols=38 Identities=8% Similarity=0.202 Sum_probs=31.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
...++-||+|. ..+.+.+..+..++.+..|||+-++..
T Consensus 52 ~~~~VgVfvn~--~~~~i~~~~~~~~ld~vQLHG~e~~~~ 89 (203)
T 1v5x_A 52 FVVRVGVFRDQ--PPEEVLRLMEEARLQVAQLHGEEPPEW 89 (203)
T ss_dssp SSEEEEEESSC--CHHHHHHHHHHTTCSEEEECSCCCHHH
T ss_pred CCCEEEEEeCC--CHHHHHHHHHhhCCCEEEECCCCCHHH
Confidence 35788999975 477888888889999999999987754
No 214
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=63.08 E-value=15 Score=23.26 Aligned_cols=35 Identities=9% Similarity=0.024 Sum_probs=29.6
Q ss_pred CCCCcEEEEecccccH--HHHHHHHHhcCceEEEecC
Q psy9627 80 KDENKTIIFAETKRKV--DKITKSIQNYGWAAVGIHG 114 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~--~~l~~~L~~~~~~~~~lhg 114 (129)
.+...+|||.|+-.+. -+++..+++.|+++..+.+
T Consensus 76 ~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 76 HAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp CTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 3568999999997765 5788888999999999988
No 215
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=62.93 E-value=5.8 Score=27.56 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=36.0
Q ss_pred CCcEEEEecc--------------cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 82 ENKTIIFAET--------------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 82 ~~~~iVF~nt--------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+-+|||.|. ...++.+.+.|+..|+.|. .+-+++..+-.++|+.|
T Consensus 69 rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~ 128 (305)
T 1f1j_A 69 LGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVI-VYNDCSCAKMQDLLKKA 128 (305)
T ss_dssp EEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEE-EEESCCHHHHHHHHHHH
T ss_pred CCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHH
Confidence 4568888864 3578889999999999985 66788888888877765
No 216
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=62.47 E-value=7.9 Score=26.48 Aligned_cols=46 Identities=11% Similarity=0.147 Sum_probs=34.8
Q ss_pred CCcEEEEecc--------------cccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 82 ENKTIIFAET--------------KRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 82 ~~~~iVF~nt--------------~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+-+|||.|. ...++.+.+.|+..|+.|. .+-+++..+-.++|+.|
T Consensus 44 rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f 103 (277)
T 4ehd_A 44 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDV 103 (277)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHH
T ss_pred CCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHH
Confidence 4667777653 3367889999999999874 67778888888887765
No 217
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=61.92 E-value=19 Score=20.14 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=27.8
Q ss_pred CCCcEEEEe-cccccHHHHHHHHHhcCceEEEecCCCChhHHHH
Q psy9627 81 DENKTIIFA-ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 81 ~~~~~iVF~-nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 123 (129)
...++.||. +.+..|..+...|.+.|++...+-=+.+...+..
T Consensus 14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~ 57 (99)
T 3qmx_A 14 VSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREA 57 (99)
T ss_dssp CCCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHH
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHH
Confidence 445677776 5577777777777777777666655555554443
No 218
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Probab=61.84 E-value=2.3 Score=25.91 Aligned_cols=39 Identities=10% Similarity=0.232 Sum_probs=25.2
Q ss_pred CCCcEEEEecccccHHHH------HHHHH--hcCc-eEEEecCCCChh
Q psy9627 81 DENKTIIFAETKRKVDKI------TKSIQ--NYGW-AAVGIHGDKSQQ 119 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l------~~~L~--~~~~-~~~~lhg~~~~~ 119 (129)
...+++|||++..++... +..|+ ..|+ ++..|.||+..=
T Consensus 77 ~~~~iVvyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W 124 (153)
T 2vsw_A 77 CSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEF 124 (153)
T ss_dssp TTSEEEEECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHH
T ss_pred CCCeEEEEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHHHH
Confidence 457899999886554332 34443 2266 688999997653
No 219
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=60.69 E-value=18 Score=19.68 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=24.5
Q ss_pred cEEEEe-cccccH------HHHHHHHHhcCceEEEecCCCChhHHHHH
Q psy9627 84 KTIIFA-ETKRKV------DKITKSIQNYGWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 84 ~~iVF~-nt~~~~------~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 124 (129)
+++||. +.+..| ...-+.|...|++...+.=..+...|...
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l 50 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEM 50 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHH
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHH
Confidence 455555 335555 67777777777776666555555555543
No 220
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=60.50 E-value=6.5 Score=24.78 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=26.5
Q ss_pred CCcEEEEecccccHHH-HHHHHHh---cCceEEEecCCCChh
Q psy9627 82 ENKTIIFAETKRKVDK-ITKSIQN---YGWAAVGIHGDKSQQ 119 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~-l~~~L~~---~~~~~~~lhg~~~~~ 119 (129)
..+++|.|+++.-++. +.+.++. .++.+..++|+.+..
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~ 123 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLK 123 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CC
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccc
Confidence 5799999999888776 5544443 378999999987654
No 221
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=59.76 E-value=17 Score=23.60 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=30.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
...++-||+|. ..+.+.+.....++.+..|||+-++..
T Consensus 53 ~~~~VgVfvn~--~~~~i~~~~~~~~ld~vQLHG~e~~~~ 90 (205)
T 1nsj_A 53 FVFRVGVFVNE--EPEKILDVASYVQLNAVQLHGEEPIEL 90 (205)
T ss_dssp SSEEEEEESSC--CHHHHHHHHHHHTCSEEEECSCCCHHH
T ss_pred CCCEEEEEeCC--CHHHHHHHHHhhCCCEEEECCCCCHHH
Confidence 35788999975 467788888888999999999987753
No 222
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=57.67 E-value=38 Score=27.93 Aligned_cols=46 Identities=11% Similarity=0.142 Sum_probs=37.4
Q ss_pred CCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCChhHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
...+++|.|+|+.-|+..++.++. .++.+..++|..+..++...++
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~ 700 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 700 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHH
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHH
Confidence 456999999999999888877764 3688999999999888766544
No 223
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=56.84 E-value=25 Score=19.97 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=44.1
Q ss_pred CCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecc------cccHHHHHHHHHhcCceEEEecC
Q psy9627 52 HNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAET------KRKVDKITKSIQNYGWAAVGIHG 114 (129)
Q Consensus 52 ~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt------~~~~~~l~~~L~~~~~~~~~lhg 114 (129)
+.++...+.++....+..+...|++-...+ .+.+|+|. ......|++..+..|.=...|.+
T Consensus 25 P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Ys~ 91 (96)
T 1wz3_A 25 PILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYAC 91 (96)
T ss_dssp CCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEEES
T ss_pred CcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 466677777888888888888887554333 88889987 56788888888776654444443
No 224
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.69 E-value=47 Score=23.07 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=41.6
Q ss_pred hHHH-HHHHHHhhhcC-CCCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhHHHHHH
Q psy9627 66 KENK-LFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQERDYVL 125 (129)
Q Consensus 66 k~~~-L~~ll~~~~~~-~~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l 125 (129)
|-.. +..+++.+... ...+++|.++++.-++.+++.++.. +..+..++|+.+.......+
T Consensus 90 KT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (414)
T 3eiq_A 90 KTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKL 155 (414)
T ss_dssp SHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHH
Confidence 5433 44455443222 4578999999999998888888653 67888999988876655444
No 225
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=55.30 E-value=29 Score=20.23 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=31.4
Q ss_pred CCcEEEEec------ccccHHHHHHHHHhcCce---EEEecCCCChhHHHHH
Q psy9627 82 ENKTIIFAE------TKRKVDKITKSIQNYGWA---AVGIHGDKSQQERDYV 124 (129)
Q Consensus 82 ~~~~iVF~n------t~~~~~~l~~~L~~~~~~---~~~lhg~~~~~~R~~~ 124 (129)
..+++||.. .+-.|...-+.|...|++ ...+-=..+...|...
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l 66 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGI 66 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHH
Confidence 568999997 488999999999999887 5555444455555443
No 226
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=55.18 E-value=9.2 Score=26.81 Aligned_cols=38 Identities=16% Similarity=0.023 Sum_probs=31.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 118 (129)
...++|++|.|--+|-.+.-.|+..|++ +..|-|..++
T Consensus 274 ~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsE 312 (327)
T 3utn_X 274 PSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTE 312 (327)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHH
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHH
Confidence 4568999999999888888888889995 7788876654
No 227
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=54.99 E-value=38 Score=25.73 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=39.0
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG 114 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg 114 (129)
.-|-..+..++..+......+++|-++|...++.+.+.+...|+++.-+.+
T Consensus 206 TGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~ 256 (624)
T 2gk6_A 206 TGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA 256 (624)
T ss_dssp SCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeecc
Confidence 447777777776654335679999999999999999999888877655543
No 228
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=53.46 E-value=41 Score=22.78 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=37.2
Q ss_pred cchHH-HHHHHHHhhhcC-CCCcEEEEecccccHHHHHHHHHhc-----CceEEEecCCCCh
Q psy9627 64 HEKEN-KLFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQ 118 (129)
Q Consensus 64 ~~k~~-~L~~ll~~~~~~-~~~~~iVF~nt~~~~~~l~~~L~~~-----~~~~~~lhg~~~~ 118 (129)
.-|-. ++.-++..+... ...++||.++|+.-|..+++.++.. ++.+..+.|+.+.
T Consensus 142 sGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~ 203 (300)
T 3fmo_B 142 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 203 (300)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCC
T ss_pred CCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccH
Confidence 33543 344556554322 3348999999999999988777653 5778888887654
No 229
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=52.92 E-value=14 Score=22.24 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=32.3
Q ss_pred CCcEEEEec------ccccHHHHHHHHHhcCceEEEecCCCChhHHHHH
Q psy9627 82 ENKTIIFAE------TKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 124 (129)
Q Consensus 82 ~~~~iVF~n------t~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 124 (129)
..+++||+. .+-.|..+-..|...|++...+.=..+...|...
T Consensus 34 ~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L 82 (135)
T 2wci_A 34 ENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAEL 82 (135)
T ss_dssp HCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHH
T ss_pred cCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHH
Confidence 347999987 6888999999999999887777655555555443
No 230
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=52.64 E-value=18 Score=23.41 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=35.8
Q ss_pred cchHH-HHHHHHHhhhc--CCCCcEEEEecccccHHHHHHHHHhc----CceEEEecCCC
Q psy9627 64 HEKEN-KLFGLLNDISS--KDENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDK 116 (129)
Q Consensus 64 ~~k~~-~L~~ll~~~~~--~~~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~ 116 (129)
.-|-. ++..++..+.. ....++||.++|+.-++.+++.++.. ++.+..++|+.
T Consensus 77 sGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 136 (245)
T 3dkp_A 77 SGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAA 136 (245)
T ss_dssp SCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHH
T ss_pred CcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCc
Confidence 33543 34445554422 23458999999999999988888764 77888887764
No 231
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=52.10 E-value=4 Score=15.91 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=6.3
Q ss_pred cEEEEeccc
Q psy9627 84 KTIIFAETK 92 (129)
Q Consensus 84 ~~iVF~nt~ 92 (129)
--|||||.+
T Consensus 6 vpiiycnrr 14 (21)
T 8tfv_A 6 VPIIYCNRR 14 (26)
T ss_dssp CCCEEEEGG
T ss_pred ccEEEEcCc
Confidence 347899865
No 232
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=51.20 E-value=24 Score=23.49 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=9.5
Q ss_pred cEEEEecccccHHHHHHHHHh
Q psy9627 84 KTIIFAETKRKVDKITKSIQN 104 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~ 104 (129)
.+.|+++|.+.++|....|.+
T Consensus 28 ~~yVla~~qrd~~W~rq~L~k 48 (227)
T 3gr1_A 28 MLYVAAQNERDTLWARQVLAR 48 (227)
T ss_dssp CEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEEccccHHHHHHHHHHh
Confidence 344444444444444444433
No 233
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*
Probab=50.43 E-value=13 Score=23.17 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=23.3
Q ss_pred CcEEEEeccc-ccHHHHH----HHHHhcC---ceEEEecCCCCh
Q psy9627 83 NKTIIFAETK-RKVDKIT----KSIQNYG---WAAVGIHGDKSQ 118 (129)
Q Consensus 83 ~~~iVF~nt~-~~~~~l~----~~L~~~~---~~~~~lhg~~~~ 118 (129)
.++||+|.+- .+....+ ..|...| ..+..|.|++..
T Consensus 105 ~~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~a 148 (169)
T 3f4a_A 105 LNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSR 148 (169)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHH
T ss_pred CeEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHH
Confidence 5889999874 4443333 3333334 579999999765
No 234
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=49.39 E-value=4.8 Score=30.67 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=29.5
Q ss_pred CCcEEEEecccccHHHH-HHHHHhcC---ceEEEecCCCChhHHH
Q psy9627 82 ENKTIIFAETKRKVDKI-TKSIQNYG---WAAVGIHGDKSQQERD 122 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l-~~~L~~~~---~~~~~lhg~~~~~~R~ 122 (129)
.+++||.++++.-+... .+.++..+ +.+..+||+.+..++.
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~ 100 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISF 100 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHH
Confidence 37999999999888887 77776643 8999999998776543
No 235
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=48.84 E-value=15 Score=21.60 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=14.2
Q ss_pred cccccHHHHHHHHHhcCceEEEe
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGI 112 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~l 112 (129)
||.+-|+.+++.|...|+.+..+
T Consensus 11 nT~~iA~~ia~~l~~~g~~v~~~ 33 (138)
T 5nul_A 11 NTEKMAELIAKGIIESGKDVNTI 33 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEE
T ss_pred hHHHHHHHHHHHHHHCCCeEEEE
Confidence 56666666666666666655444
No 236
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=48.66 E-value=51 Score=26.07 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG 114 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg 114 (129)
.-|-..+..++..+......+++|-++|...++.+.+.+...|+++.-+.+
T Consensus 382 TGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~ 432 (800)
T 2wjy_A 382 TGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA 432 (800)
T ss_dssp SCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEeecc
Confidence 447777777776654335679999999999999999999888877655543
No 237
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=47.80 E-value=32 Score=25.35 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=31.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
....+=||+|. ..+.+.+.++..++.+..|||+-++..
T Consensus 304 ~v~~VgVFvn~--~~~~i~~~~~~~~ld~vQLHG~E~~~~ 341 (452)
T 1pii_A 304 PLQYVGVFRNH--DIADVVDKAKVLSLAAVQLHGNEEQLY 341 (452)
T ss_dssp CCEEEEEESSC--CHHHHHHHHHHHTCSEEEECSCCCHHH
T ss_pred CCCEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 45788899985 477888888888999999999977754
No 238
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=46.75 E-value=37 Score=19.04 Aligned_cols=61 Identities=5% Similarity=0.026 Sum_probs=40.0
Q ss_pred CCceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecc------cccHHHHHHHHHhcCceEEEecC
Q psy9627 52 HNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAET------KRKVDKITKSIQNYGWAAVGIHG 114 (129)
Q Consensus 52 ~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt------~~~~~~l~~~L~~~~~~~~~lhg 114 (129)
+.++...+.++....+..+...|++-.. -..+.+|||. ...+..|++..+..|.=...|.+
T Consensus 20 P~l~k~KflV~~~~t~~~~v~~lRkrL~--l~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys~ 86 (91)
T 3w1s_C 20 GQLKPSVCKISMSQSFAMVILFLKRRLK--MDHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYCA 86 (91)
T ss_dssp ------EEEEETTSBHHHHHHHHHHHHT--CSCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEEC
T ss_pred CcccccEEEcCCCCCHHHHHHHHHHhhC--CceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEeC
Confidence 5677777888999999888888875432 3789999976 35778888888766654444443
No 239
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=46.06 E-value=61 Score=21.30 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEec-----ccccHHHHHHHHHhcCceEEEecCCCC
Q psy9627 66 KENKLFGLLNDISSKDENKTIIFAE-----TKRKVDKITKSIQNYGWAAVGIHGDKS 117 (129)
Q Consensus 66 k~~~L~~ll~~~~~~~~~~~iVF~n-----t~~~~~~l~~~L~~~~~~~~~lhg~~~ 117 (129)
|......+... -...+++||+| |.+..+.+.++....++++..+-....
T Consensus 148 ~i~~~lki~~e---l~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vL~IE~~~~ 201 (220)
T 3s5u_A 148 KVMEITQVHRY---LSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVV 201 (220)
T ss_dssp HHHHHHHHHHH---CTTCCEEEEESGGGGCCHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHHHHHH---hcCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEecccc
Confidence 44444444444 46789999998 467888899999999999988877643
No 240
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=45.77 E-value=30 Score=25.16 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=32.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc----CceEEEecCCCChhH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGDKSQQE 120 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~ 120 (129)
..++++|.|+++.-++...+.++.. +..+..++|+.+..+
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~ 199 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD 199 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTG
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCcccc
Confidence 4469999999999999888888764 357899999987654
No 241
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=45.70 E-value=57 Score=21.61 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEec-----ccccHHHHHHHHHhcCceEEEecCC
Q psy9627 66 KENKLFGLLNDISSKDENKTIIFAE-----TKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 66 k~~~L~~ll~~~~~~~~~~~iVF~n-----t~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
|......+... -...+++||+| |.+..+.+.++....++++..+-..
T Consensus 148 ki~~~lki~~e---l~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vLlIE~~ 199 (229)
T 3qhq_A 148 KCFEIIQVYHY---LTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPR 199 (229)
T ss_dssp HHHHHHHHHHH---CTTCCEEEEESCGGGCCHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred HHHHHHHHHHH---hcCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 44444444444 46789999998 4678888999999889998887665
No 242
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.52 E-value=41 Score=19.10 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=30.2
Q ss_pred CcEEEEe-cccccHH------HHHHHHHhcCceEEEecCCCChhHHHHHHh
Q psy9627 83 NKTIIFA-ETKRKVD------KITKSIQNYGWAAVGIHGDKSQQERDYVLK 126 (129)
Q Consensus 83 ~~~iVF~-nt~~~~~------~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 126 (129)
.+++||. +.+..|+ .+-+.|...|++...+.=..+...|.+..+
T Consensus 8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~ 58 (111)
T 2ct6_A 8 MVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYK 58 (111)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHH
T ss_pred cEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 3566776 5566666 788888888888777776666666665544
No 243
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=44.31 E-value=46 Score=22.06 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=29.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcC----ceEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYG----WAAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~----~~~~~lhg~~~~ 118 (129)
..+++||.|+++.-++...+.++..+ ..+..++|+.+.
T Consensus 156 ~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~ 197 (282)
T 1rif_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASK 197 (282)
T ss_dssp CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcc
Confidence 34599999999999988888887653 356778777654
No 244
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=44.09 E-value=46 Score=19.31 Aligned_cols=43 Identities=9% Similarity=0.117 Sum_probs=31.6
Q ss_pred CCcEEEEec------ccccHHHHHHHHHhcCce-EEEecCCCChhHHHHH
Q psy9627 82 ENKTIIFAE------TKRKVDKITKSIQNYGWA-AVGIHGDKSQQERDYV 124 (129)
Q Consensus 82 ~~~~iVF~n------t~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~ 124 (129)
..+++||.. .+-.|...-+.|...|++ ...+.=..+...|...
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l 68 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGI 68 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHH
Confidence 458999997 488999999999999985 6665544555555443
No 245
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=43.23 E-value=54 Score=19.88 Aligned_cols=44 Identities=2% Similarity=0.145 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEec
Q psy9627 67 ENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 67 ~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
...+..+++.. +.+..++.++.....+.+.+.|+..|+....+.
T Consensus 104 ~~~~~~~~~~l---pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~ 147 (170)
T 3q87_B 104 REVIDRFVDAV---TVGMLYLLVIEANRPKEVLARLEERGYGTRILK 147 (170)
T ss_dssp CHHHHHHHHHC---CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhhC---CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEE
Confidence 45566666654 566777777888999999999999988765544
No 246
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=42.91 E-value=26 Score=21.39 Aligned_cols=24 Identities=17% Similarity=0.172 Sum_probs=13.5
Q ss_pred cccccHHHHHHHHHhcCceEEEec
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
||.+.|+.+++.|...|+.+..+.
T Consensus 13 nT~~~A~~ia~~l~~~g~~v~~~~ 36 (161)
T 3hly_A 13 YSDRLSQAIGRGLVKTGVAVEMVD 36 (161)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEE
Confidence 555556666666655565554443
No 247
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=42.48 E-value=28 Score=21.27 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=17.5
Q ss_pred cccccHHHHHHHHHhcCceEEEecC
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGIHG 114 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~lhg 114 (129)
||.+.|+.+++.|...|+.+..+.-
T Consensus 17 nT~~iA~~ia~~l~~~g~~v~~~~~ 41 (159)
T 3fni_A 17 YSDRLAQAIINGITKTGVGVDVVDL 41 (159)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 6777777777777777777665543
No 248
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=42.27 E-value=35 Score=17.49 Aligned_cols=7 Identities=0% Similarity=-0.358 Sum_probs=3.1
Q ss_pred cCceEEE
Q psy9627 105 YGWAAVG 111 (129)
Q Consensus 105 ~~~~~~~ 111 (129)
.++|+..
T Consensus 50 ~~vP~l~ 56 (82)
T 1fov_A 50 TTVPQIF 56 (82)
T ss_dssp CCSCEEE
T ss_pred CCcCEEE
Confidence 3445443
No 249
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=41.40 E-value=26 Score=20.70 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=15.9
Q ss_pred cccccHHHHHHHHHhcCceEEEec
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
||++-|+.+++.+...|+.+..+.
T Consensus 14 nT~~~A~~ia~~l~~~g~~v~~~~ 37 (148)
T 3f6r_A 14 NTESIAQKLEELIAAGGHEVTLLN 37 (148)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCeEEEEe
Confidence 566667777777777776665543
No 250
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=41.15 E-value=53 Score=19.24 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=30.3
Q ss_pred cEEEEecccccHHHHHHHH---HhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 84 KTIIFAETKRKVDKITKSI---QNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L---~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
-++|.+ |.+.-+|+.+.+ +..|..+...+.+-+...|.++-+.|
T Consensus 79 dvvviv-ttddkewikdfieeakergvevfvvynnkdddrrkeaqqef 125 (162)
T 2l82_A 79 DVVVIV-TTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEF 125 (162)
T ss_dssp CEEEEE-ECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHH
T ss_pred cEEEEE-ecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHh
Confidence 344444 344556666655 45799999999999988888876654
No 251
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=40.13 E-value=49 Score=18.50 Aligned_cols=63 Identities=6% Similarity=0.090 Sum_probs=44.5
Q ss_pred CCceEEEEEcCccchHHHHHHHHHhhhcC-CCCcEEEEecc------cccHHHHHHHHHhcCceEEEecC
Q psy9627 52 HNIQQVVEVCAEHEKENKLFGLLNDISSK-DENKTIIFAET------KRKVDKITKSIQNYGWAAVGIHG 114 (129)
Q Consensus 52 ~~i~~~~~~~~~~~k~~~L~~ll~~~~~~-~~~~~iVF~nt------~~~~~~l~~~L~~~~~~~~~lhg 114 (129)
+.++...+.++.+..+..+...|+.-... +...+.+|||. ......|++..+..|.=...|.+
T Consensus 17 P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys~ 86 (91)
T 4gdk_A 17 PIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCK 86 (91)
T ss_dssp CCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEES
T ss_pred CcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 46677777788888888888888754433 34678899975 35777888888766655555544
No 252
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=39.00 E-value=43 Score=21.45 Aligned_cols=29 Identities=10% Similarity=0.321 Sum_probs=20.6
Q ss_pred CCCcEEEEeccc-------ccHHHHHHHHHhcCceE
Q psy9627 81 DENKTIIFAETK-------RKVDKITKSIQNYGWAA 109 (129)
Q Consensus 81 ~~~~~iVF~nt~-------~~~~~l~~~L~~~~~~~ 109 (129)
+..++-|||.++ +.|.++.+.|.+.|+.+
T Consensus 12 ~~~~I~Vfg~s~~~~~~~~~~A~~lg~~la~~g~~l 47 (189)
T 3sbx_A 12 GRWTVAVYCAAAPTHPELLELAGAVGAAIAARGWTL 47 (189)
T ss_dssp -CCEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEE
Confidence 446788999765 45777888888887654
No 253
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=38.54 E-value=46 Score=21.72 Aligned_cols=37 Identities=8% Similarity=0.264 Sum_probs=28.6
Q ss_pred CcEEEEecccccHHHHHHHHHhcCce---EEEecCCCChh
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWA---AVGIHGDKSQQ 119 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~---~~~lhg~~~~~ 119 (129)
.-+|||+++.+.+..+.+.+....+. .+..+|.++..
T Consensus 57 SGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~~ 96 (228)
T 1v9k_A 57 SGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 96 (228)
T ss_dssp EEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCTT
T ss_pred eEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEecccCCC
Confidence 46889999999999999999876554 45667776543
No 254
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=38.28 E-value=91 Score=21.10 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=28.7
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChh
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQ 119 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 119 (129)
.--.||+++.......+.+.+...|+++..+....+..
T Consensus 62 ~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~ 99 (350)
T 3h75_A 62 KPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLD 99 (350)
T ss_dssp CCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTT
T ss_pred CCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChH
Confidence 44667777765666777788888999999998876654
No 255
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=38.22 E-value=45 Score=19.00 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=25.9
Q ss_pred cEEEEecc----cccHHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 84 KTIIFAET----KRKVDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 84 ~~iVF~nt----~~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
++++.|.+ .--++.+.+.+++.|+++...|.+.++-.
T Consensus 5 kIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~ 45 (106)
T 1e2b_A 5 HIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAG 45 (106)
T ss_dssp EEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTT
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHH
Confidence 67888843 34555666777778998888887766543
No 256
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=37.70 E-value=49 Score=26.15 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=37.2
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEec
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
.-|-..+..++..+......+++|.+.|...++.+.+.|...|+++.-+.
T Consensus 386 TGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g 435 (802)
T 2xzl_A 386 TGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLT 435 (802)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECC
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEeec
Confidence 44766666666544322467999999999999999999988887665544
No 257
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=37.41 E-value=87 Score=20.61 Aligned_cols=26 Identities=15% Similarity=0.242 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCceEEEecCCCChhH
Q psy9627 95 VDKITKSIQNYGWAAVGIHGDKSQQE 120 (129)
Q Consensus 95 ~~~l~~~L~~~~~~~~~lhg~~~~~~ 120 (129)
.+++.+.+...++.+..|||+-+++.
T Consensus 81 ~~ei~~~i~~~~ld~vQLHG~E~~~~ 106 (228)
T 4aaj_A 81 FSEWAMAIERTGAQYIQVHSNALPQT 106 (228)
T ss_dssp HHHHHHHHHHHTCSEEEECSCCCHHH
T ss_pred hHHHHHHHHhccchheecccccCHHH
Confidence 56777888888999999999988764
No 258
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=37.29 E-value=18 Score=26.72 Aligned_cols=29 Identities=7% Similarity=0.157 Sum_probs=25.4
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEE
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~ 110 (129)
..+++|.|.|..+++.+.+.|...|+++.
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~ 410 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQ 410 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCE
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCce
Confidence 57999999999999999999998887643
No 259
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=37.25 E-value=1e+02 Score=21.27 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=36.2
Q ss_pred cchHHH-HHHHHHhhhcC-CCCcEEEEecccccHHHHHHHHHhc-----CceEEEecCCCCh
Q psy9627 64 HEKENK-LFGLLNDISSK-DENKTIIFAETKRKVDKITKSIQNY-----GWAAVGIHGDKSQ 118 (129)
Q Consensus 64 ~~k~~~-L~~ll~~~~~~-~~~~~iVF~nt~~~~~~l~~~L~~~-----~~~~~~lhg~~~~ 118 (129)
.-|-.. +..+++.+... ...++||.++|+.-+..+++.++.. ++.+....|+...
T Consensus 75 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (412)
T 3fht_A 75 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 136 (412)
T ss_dssp SCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCC
T ss_pred chHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcch
Confidence 335433 44455544322 3358999999999999988877652 5677777776543
No 260
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=36.94 E-value=1e+02 Score=21.21 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHhhhc---CCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISS---KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~---~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|......++..... ..++.+||=+.+-+.+..++..-+..|++|..+...-....+...++.+
T Consensus 51 SfK~R~a~~~l~~a~~~g~l~~~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 118 (325)
T 3dwg_A 51 SIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELY 118 (325)
T ss_dssp BTTHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHC
Confidence 3466554444432211 1235788888889999999999999999988776665555566655543
No 261
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=36.91 E-value=49 Score=19.53 Aligned_cols=23 Identities=4% Similarity=0.291 Sum_probs=17.9
Q ss_pred cccccHHHHHHHHHhcCceEEEe
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGI 112 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~l 112 (129)
||++-|+.+++.|...|+.+..+
T Consensus 14 nT~~~A~~ia~~l~~~g~~v~~~ 36 (147)
T 2hna_A 14 GAEYVAEHLAEKLEEAGFTTETL 36 (147)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHCCCceEEe
Confidence 77888888888888777776554
No 262
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=36.72 E-value=32 Score=19.83 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=13.1
Q ss_pred cccccHHHHHHHHHhcCceEEEec
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
||++-|+.+++.+...|+.+..+.
T Consensus 12 nT~~~a~~i~~~l~~~g~~v~~~~ 35 (137)
T 2fz5_A 12 NTEAMANEIEAAVKAAGADVESVR 35 (137)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCeEEEEE
Confidence 455555556666655555554443
No 263
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=35.93 E-value=51 Score=17.46 Aligned_cols=6 Identities=0% Similarity=0.241 Sum_probs=2.7
Q ss_pred cCceEE
Q psy9627 105 YGWAAV 110 (129)
Q Consensus 105 ~~~~~~ 110 (129)
.++|+.
T Consensus 55 ~~vP~l 60 (92)
T 2khp_A 55 NTFPQI 60 (92)
T ss_dssp SCCCEE
T ss_pred CCcCEE
Confidence 345543
No 264
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=35.81 E-value=45 Score=21.56 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=28.4
Q ss_pred CcEEEEecccccHHHHHHHHHhcCce---EEEecCCCCh
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWA---AVGIHGDKSQ 118 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~---~~~lhg~~~~ 118 (129)
.-+|||+++.+.+..+.+.+....+. .+..+|..+.
T Consensus 66 SGlll~ak~~~~~~~l~~~f~~~~v~K~Y~a~v~G~~~~ 104 (217)
T 2i82_A 66 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP 104 (217)
T ss_dssp EEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCSS
T ss_pred eEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEecccCC
Confidence 46889999999999999999887664 5566776654
No 265
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=34.65 E-value=1.1e+02 Score=21.17 Aligned_cols=65 Identities=8% Similarity=0.058 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHhhhcC---CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSK---DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~---~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|..-....+...... ...+.||=+.+-+.+..++..-+..|++|..+-.+-....+...++.+
T Consensus 54 SfK~Rga~~~i~~a~~~g~~~~~~~vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 121 (346)
T 3l6b_A 54 SFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAY 121 (346)
T ss_dssp BTHHHHHHHHHHTTC-----CCCSCEEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHhccccCCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHC
Confidence 34665555555443221 244567777888999999999899999988776655555566666654
No 266
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=34.60 E-value=73 Score=18.89 Aligned_cols=34 Identities=9% Similarity=0.182 Sum_probs=28.1
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCceEEEec
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
....++++-|++.+.-..+.+..+..|+++..++
T Consensus 46 ~G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~I~ 79 (123)
T 1rzw_A 46 EGQKKVVLKVKSLEELLGIKHKAESLGLVTGLVQ 79 (123)
T ss_dssp GCSSEEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 3456788899999999999999999999887663
No 267
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=34.23 E-value=49 Score=23.75 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=25.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCC
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 117 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~ 117 (129)
...+++|-++|+.-|+.+++.++ |+++..++|++.
T Consensus 30 ~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~ 64 (431)
T 2v6i_A 30 KRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQ 64 (431)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTT--TSCEEEC-----
T ss_pred CCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCcc
Confidence 45699999999999999999886 677777777654
No 268
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=34.10 E-value=55 Score=17.30 Aligned_cols=23 Identities=9% Similarity=-0.114 Sum_probs=12.4
Q ss_pred ccccHHHHHHHHHhcCceEEEec
Q psy9627 91 TKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 91 t~~~~~~l~~~L~~~~~~~~~lh 113 (129)
++-.|...-..|+..|++...+.
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~id 35 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFIN 35 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCccHHHHHHHHHHcCCCEEEEE
Confidence 34455556666666665544443
No 269
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=33.63 E-value=99 Score=20.11 Aligned_cols=38 Identities=8% Similarity=0.033 Sum_probs=24.1
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
...-+|++...........+.+...|+++..+....+.
T Consensus 64 ~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~ 101 (293)
T 3l6u_A 64 KVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRS 101 (293)
T ss_dssp TCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCC
T ss_pred CCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCC
Confidence 34444544444444446667788889999988776553
No 270
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=33.56 E-value=1.1e+02 Score=20.76 Aligned_cols=64 Identities=6% Similarity=-0.015 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|...+..++..... ....+||=+.+-+.+..++..-+..|++|..+..+-....+.+.++.+
T Consensus 36 S~K~R~a~~~l~~a~~-~g~~~vv~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~ 99 (318)
T 2rkb_A 36 SFKIRGIGHFCQEMAK-KGCRHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGE 99 (318)
T ss_dssp BTTHHHHHHHHHHHHH-TTCCEEEECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHH-cCCCEEEEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhc
Confidence 4465555445543322 246777877888888889988888999988877654445555555544
No 271
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=33.45 E-value=42 Score=23.04 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=21.4
Q ss_pred EEEecccccHHHHHHHHHhcCceEE
Q psy9627 86 IIFAETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 86 iVF~nt~~~~~~l~~~L~~~~~~~~ 110 (129)
.||.||-..+++++..+++.|++..
T Consensus 123 ~v~~n~~~~~~~~~~~~~e~Gv~pE 147 (282)
T 2y7e_A 123 DIFINHPADIIRLAEAFKQYNVVPE 147 (282)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEE
T ss_pred ccccCCHHHHHHHHHHHHHcCCeEE
Confidence 7899999999999999998887643
No 272
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=32.77 E-value=1.5e+02 Score=21.79 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=31.3
Q ss_pred CcEEEEecccccHHHHHHHHHhc--------CceEEEecCCCChhHHH
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNY--------GWAAVGIHGDKSQQERD 122 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~R~ 122 (129)
.++||.++|+.-|..+++.++.. ++.+..+.|+.+.....
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 194 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM 194 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHH
Confidence 48999999999999988888762 45688888887765433
No 273
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=32.65 E-value=62 Score=21.00 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=9.6
Q ss_pred cEEEEecccccHHHHHHHHHh
Q psy9627 84 KTIIFAETKRKVDKITKSIQN 104 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~ 104 (129)
.+.|++++.+.++|....|.+
T Consensus 28 ~iyVla~~qrd~~W~rQ~L~k 48 (197)
T 3gr0_A 28 MLYVAAQNERDTLWARQVLAR 48 (197)
T ss_dssp CEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEEccccHHHHHHHHHHh
Confidence 344444444444444444433
No 274
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=32.33 E-value=54 Score=25.41 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=30.9
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKS 117 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~ 117 (129)
++.++-++|+.-|..+++.++..|+++..+.|+.+
T Consensus 180 ~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~ 214 (677)
T 3rc3_A 180 KSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEER 214 (677)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCE
T ss_pred CCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCee
Confidence 34577799999999999999999999999999854
No 275
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=32.02 E-value=77 Score=18.40 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=26.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEe
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGI 112 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~l 112 (129)
...++++-|++.+.-..+.+..+..|+++..+
T Consensus 48 g~~kivlk~~~e~~l~~l~~~a~~~gl~~~~i 79 (115)
T 2zv3_A 48 GQKKVVVKVNSEKELIDIYNKARSEGLPCSII 79 (115)
T ss_dssp TCCEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 44577778999899999999999999987655
No 276
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=32.00 E-value=68 Score=22.52 Aligned_cols=107 Identities=10% Similarity=0.063 Sum_probs=58.2
Q ss_pred CCCCceEEEEEecCcHHHHHHHHHh-c---cCccEEEeCCCCcccCCCceEEEEEcCc----cchHHHHHHHHHhhhcCC
Q psy9627 10 YKPDRQVLMWSATWPREVQKLAEDF-L---DSYIQINIGSLTLSANHNIQQVVEVCAE----HEKENKLFGLLNDISSKD 81 (129)
Q Consensus 10 l~~~~Q~ll~SAT~~~~v~~~~~~~-~---~~~~~i~~~~~~~~~~~~i~~~~~~~~~----~~k~~~L~~ll~~~~~~~ 81 (129)
+.++.+++...+| ...+++++..- . .++..+-.-+.. . ..--+.++ ... -.-+..+.++.... .+
T Consensus 7 ~~~~tkviV~G~~-Gk~~~~ml~~~~~~~r~~~~vVagV~P~-~--~g~~~~v~-~G~~~~Gvpvy~sv~ea~~~~--p~ 79 (334)
T 3mwd_B 7 FSRHTKAIVWGMQ-TRAVQGMLDFDYVCSRDEPSVAAMVYPF-T--GDHKQKFY-WGHKEILIPVFKNMADAMRKH--PE 79 (334)
T ss_dssp CCTTCCEEEESCC-HHHHHHHHHHHHHTTCSSCSEEEEECTT-S--CSEEEEEE-ETTEEEEEEEESSHHHHHHHC--TT
T ss_pred cCCCCeEEEECCc-hHHHHHHHHhcccccCCCceEEEEEcCC-C--CCccceEe-ccCccCCceeeCCHHHHhhcC--CC
Confidence 4567788888888 34555555542 2 234444322211 0 10001111 000 01123344455431 13
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCce-EEEecCCCChhHHHH
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWA-AVGIHGDKSQQERDY 123 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~ 123 (129)
..-++||++-....+.+.+.+.+.|++ +.++..++++.+..+
T Consensus 80 ~DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~ 122 (334)
T 3mwd_B 80 VDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRK 122 (334)
T ss_dssp CCEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHH
T ss_pred CcEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
Confidence 578899998888888888999888997 555599999855443
No 277
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=31.35 E-value=69 Score=26.04 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=32.4
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc--CceEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~--~~~~~~lhg~~~~ 118 (129)
...++||.++++.-+...++.++.. ++.+..++|+.+.
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~ 120 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQI 120 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcc
Confidence 4578999999999999999999875 7899999998754
No 278
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=31.28 E-value=45 Score=19.56 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=14.3
Q ss_pred cccccHHHHHHHHHhcCceEEEe
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGI 112 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~l 112 (129)
||+.-|+.+++.+...|+.+..+
T Consensus 13 nt~~~a~~i~~~l~~~g~~v~~~ 35 (147)
T 1f4p_A 13 NTEYTAETIARELADAGYEVDSR 35 (147)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCeeEEE
Confidence 55666666777776666655443
No 279
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=31.24 E-value=43 Score=22.87 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=21.1
Q ss_pred EEEecccccHHHHHHHHHhcCceEE
Q psy9627 86 IIFAETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 86 iVF~nt~~~~~~l~~~L~~~~~~~~ 110 (129)
.||.||-..+++++..+++.|++..
T Consensus 118 ~v~~N~~~~~~~~~~~~~e~Gi~pE 142 (275)
T 3no5_A 118 RVYDNPPELVDWLAAEMKTYGIKPE 142 (275)
T ss_dssp SEECCCHHHHHHHHHHHHHTTCEEE
T ss_pred ccccCCHHHHHHHHHHHHHcCCeeE
Confidence 5799999999999999998887644
No 280
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=31.03 E-value=1.1e+02 Score=23.31 Aligned_cols=49 Identities=10% Similarity=0.117 Sum_probs=37.5
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEec
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
.=|-..+..++..+.. ...+++|-+.|...++.+.+.|...+.++..+.
T Consensus 216 TGKT~ti~~~I~~l~~-~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 216 TGKTTTVVEIILQAVK-QGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp SCHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCHHHHHHHHHHHHHh-CCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 4466666666665543 467999999999999999999998887776553
No 281
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=30.79 E-value=1.3e+02 Score=20.72 Aligned_cols=65 Identities=11% Similarity=0.117 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHhhhcC---CCCcE-EEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSK---DENKT-IIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~---~~~~~-iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|......++...... .++.+ ||-+.+-+.+..++..-+..|++|..+..+-....+...++.+
T Consensus 49 SfK~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 117 (334)
T 3tbh_A 49 SVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIF 117 (334)
T ss_dssp BTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHC
Confidence 34665444444322111 23455 5777788899999999999999998887765556666666655
No 282
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=30.79 E-value=46 Score=25.58 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=36.9
Q ss_pred HHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh---cCceEEEecCCCChhH
Q psy9627 71 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQE 120 (129)
Q Consensus 71 ~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~ 120 (129)
..+++.+. ....++++-++++.-+...++.++. .|+++..++|+.+...
T Consensus 58 l~il~~~~-~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~ 109 (720)
T 2zj8_A 58 IAMVHRIL-TQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKD 109 (720)
T ss_dssp HHHHHHHH-HHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCC
T ss_pred HHHHHHHH-hCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccc
Confidence 44444432 1357999999999999999998853 4899999999877654
No 283
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=30.78 E-value=91 Score=25.68 Aligned_cols=38 Identities=11% Similarity=0.021 Sum_probs=32.8
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
..++++|-++|+.-+...+..+....-.+..++|+.+.
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~ 263 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI 263 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBC
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCcccc
Confidence 46799999999999999999998865589999998764
No 284
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=30.52 E-value=85 Score=18.43 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=26.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEe
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGI 112 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~l 112 (129)
...++++-|++.+.-..+.+..+..|+++..+
T Consensus 54 g~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~i 85 (121)
T 1wn2_A 54 GQKKVVVKVESEEELFKLKAEAEKLGLPNALI 85 (121)
T ss_dssp TCCEEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHCCCCEEEE
Confidence 44577778999999999999999999997666
No 285
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=30.26 E-value=64 Score=24.69 Aligned_cols=48 Identities=10% Similarity=0.170 Sum_probs=36.4
Q ss_pred HHHHHhhhcCCCCcEEEEecccccHHHHHHHHHh---cCceEEEecCCCChhH
Q psy9627 71 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQN---YGWAAVGIHGDKSQQE 120 (129)
Q Consensus 71 ~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~ 120 (129)
..+++.+. ..+++++.++++.-|...++.++. .|+++..++|+....+
T Consensus 59 l~il~~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~ 109 (702)
T 2p6r_A 59 MAMVREAI--KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRD 109 (702)
T ss_dssp HHHHHHHH--TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCS
T ss_pred HHHHHHHH--hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcch
Confidence 44444442 367999999999999999998843 4789999999876544
No 286
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=30.20 E-value=1.4e+02 Score=22.36 Aligned_cols=63 Identities=10% Similarity=0.112 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 66 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 66 k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
|..--...+.........+.||=+.+-+.+.-++..-+..|+++..+...-...++.+.++.+
T Consensus 62 KdRgA~n~i~~l~~~~~~~gVV~aSsGNhg~avA~aa~~lGi~~~IvmP~~~p~~Kv~~~r~~ 124 (514)
T 1tdj_A 62 KLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGF 124 (514)
T ss_dssp THHHHHHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHC
Confidence 443333334333222345678878889999999999999999999887655555566555543
No 287
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=30.18 E-value=75 Score=21.42 Aligned_cols=13 Identities=8% Similarity=-0.048 Sum_probs=7.6
Q ss_pred HhcCceEEEecCC
Q psy9627 103 QNYGWAAVGIHGD 115 (129)
Q Consensus 103 ~~~~~~~~~lhg~ 115 (129)
+..|.+...++|.
T Consensus 124 ~~lG~~~v~~~~~ 136 (305)
T 3obe_A 124 AELGVSCMVQPSL 136 (305)
T ss_dssp HHHTCSEEEECCC
T ss_pred HHcCCCEEEeCCC
Confidence 3457776666643
No 288
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=30.01 E-value=59 Score=21.44 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
..+..+++ ..+.+.-|||.+-..|-.+...|++.|+.
T Consensus 186 ~~~~~~l~----~~~~~~ai~~~~d~~A~g~~~al~~~g~~ 222 (301)
T 3miz_A 186 AAATEMLK----QDDRPTAIMSGNDEMAIQIYIAAMALGLR 222 (301)
T ss_dssp HHHHHHHT----STTCCSEEEESSHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHc----CCCCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 34445554 34667888998888898999999998875
No 289
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=29.76 E-value=1.3e+02 Score=22.17 Aligned_cols=47 Identities=6% Similarity=0.151 Sum_probs=37.2
Q ss_pred eEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc
Q psy9627 55 QQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY 105 (129)
Q Consensus 55 ~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~ 105 (129)
.+.+.-+.+..|.-.+..+++. ...+++|.|++...|+.+++.|+..
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~----~~~p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER----HAGPVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH----SSSCEEEEESSHHHHHHHHHHHHHT
T ss_pred eEEEeCCCchHHHHHHHHHHHH----hCCCEEEEeCCHHHHHHHHHHHHhh
Confidence 4555667777787777777765 3668999999999999999999864
No 290
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=29.50 E-value=45 Score=23.30 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=23.1
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEE
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~ 110 (129)
+-.||.||-..+++++..+++.|++..
T Consensus 158 ~~~v~~n~~~~i~~~~~~~~e~Gv~pE 184 (316)
T 3c6c_A 158 LEFVYLNTTRTLRAMARRFQELGIKPE 184 (316)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEE
T ss_pred CceeecCCHHHHHHHHHHHHHcCCeEE
Confidence 367899999999999999999888644
No 291
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=29.31 E-value=54 Score=17.40 Aligned_cols=17 Identities=6% Similarity=0.272 Sum_probs=7.4
Q ss_pred cccHHHHHHHHHhcCce
Q psy9627 92 KRKVDKITKSIQNYGWA 108 (129)
Q Consensus 92 ~~~~~~l~~~L~~~~~~ 108 (129)
.+.|+.+...|...|++
T Consensus 20 ~~~A~~l~~~L~~~G~~ 36 (81)
T 1uta_A 20 AEQAETVRAQLAFEGFD 36 (81)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 44444444444444443
No 292
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=29.29 E-value=88 Score=18.21 Aligned_cols=34 Identities=9% Similarity=0.184 Sum_probs=27.3
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCceEEEec
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
....++++-|++.+.-..+.+..+..|+++..++
T Consensus 49 ~g~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~v~ 82 (117)
T 1rlk_A 49 EGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQ 82 (117)
T ss_dssp TTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 3456777888998999999999999999876663
No 293
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=29.18 E-value=80 Score=17.76 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=25.5
Q ss_pred CCcEEEEe-cccccHHHHHHHHHhcCceEEEecCCC
Q psy9627 82 ENKTIIFA-ETKRKVDKITKSIQNYGWAAVGIHGDK 116 (129)
Q Consensus 82 ~~~~iVF~-nt~~~~~~l~~~L~~~~~~~~~lhg~~ 116 (129)
..+++||. +++-.|..+...|...|++...+.=+.
T Consensus 16 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~~~~~dvd~ 51 (114)
T 3h8q_A 16 RSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQ 51 (114)
T ss_dssp HCSEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHcCCCcEEEEecC
Confidence 34688887 568888888888888888766655443
No 294
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=29.10 E-value=27 Score=19.61 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=21.7
Q ss_pred HHHHHHHhcCceE----------EEecCCCChhHHHHHHhcCC
Q psy9627 97 KITKSIQNYGWAA----------VGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 97 ~l~~~L~~~~~~~----------~~lhg~~~~~~R~~~l~~~~ 129 (129)
.+-+.|.+.|+.. ..+-+++++.+|.+.++.|+
T Consensus 32 ~FIaFLNElG~t~~G~~~t~~sfr~m~~~lt~~ek~elieeFn 74 (90)
T 1jr5_A 32 NFIAFLNEIGVTHEGRKLNQNSFRKIVSELTQEDKKTLIDEFN 74 (90)
T ss_dssp HHHHHHHHHTCCSSSSCCCSHHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHcCCCCCcchhHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 3445666666621 12334589999999999985
No 295
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=29.09 E-value=45 Score=17.49 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=10.8
Q ss_pred cccHHHHHHHHHhcCceEEE
Q psy9627 92 KRKVDKITKSIQNYGWAAVG 111 (129)
Q Consensus 92 ~~~~~~l~~~L~~~~~~~~~ 111 (129)
++.|+.+...|+..|+++..
T Consensus 56 ~~~A~~~~~~L~~~g~~~~i 75 (79)
T 1x60_A 56 KDNADTLAARAKNAGFDAIV 75 (79)
T ss_dssp HHHHHHHHHHHHHHTSCCEE
T ss_pred HHHHHHHHHHHHHcCCceEE
Confidence 44555566666555555443
No 296
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=28.98 E-value=1.4e+02 Score=20.33 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=35.4
Q ss_pred chHH-HHHHHHHhhhc-CCCCcEEEEecccccHHHHHHHHHh----cCceEEEecCCCC
Q psy9627 65 EKEN-KLFGLLNDISS-KDENKTIIFAETKRKVDKITKSIQN----YGWAAVGIHGDKS 117 (129)
Q Consensus 65 ~k~~-~L~~ll~~~~~-~~~~~~iVF~nt~~~~~~l~~~L~~----~~~~~~~lhg~~~ 117 (129)
-|-. ++..++..+.. ....++||.|+++.-++..++.++. .++.+..++|+..
T Consensus 56 GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 114 (395)
T 3pey_A 56 GKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSF 114 (395)
T ss_dssp CHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSS
T ss_pred cHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCch
Confidence 3543 23344444322 2456899999999999988888876 4577888887754
No 297
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=28.67 E-value=72 Score=21.55 Aligned_cols=28 Identities=7% Similarity=0.140 Sum_probs=24.5
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEE
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~ 110 (129)
+-+|.+|.+.+.++.+.+.+++.|++..
T Consensus 297 gc~ial~~~~~~~~~i~~~~~~~Gi~~~ 324 (335)
T 3gon_A 297 DCGIALSFDAQSTKTLKNRWADLGIELL 324 (335)
T ss_dssp SEEEEEECSHHHHHHHHHHHHHTTCEEE
T ss_pred heEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 4678899989999999999999999863
No 298
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=28.22 E-value=62 Score=24.04 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=27.9
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
..+++|-++|+..++.+.+.+...++++..+.|.
T Consensus 51 ~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~gr 84 (540)
T 2vl7_A 51 KKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLIGK 84 (540)
T ss_dssp TCEEEEEESCHHHHHHHHHHHGGGTCCEEEC---
T ss_pred CCcEEEEcCCHHHHHHHHHHHHhcCCcEEEecCC
Confidence 5799999999999999999998888888888774
No 299
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=28.20 E-value=1.6e+02 Score=20.75 Aligned_cols=64 Identities=8% Similarity=-0.086 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|...+..++..... ....+||=+.+-+.+..++..-...|++|..+-.+-....+...++.+
T Consensus 75 SfKdRga~~~l~~a~~-~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 138 (372)
T 1p5j_A 75 SFKIRGIGHFCKRWAK-QGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNE 138 (372)
T ss_dssp BTTHHHHHHHHHHHHH-TTCCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhc
Confidence 3466555555543322 246778878888899999988888999998887665556666666554
No 300
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=28.17 E-value=92 Score=18.54 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=13.0
Q ss_pred EEEEecccccHHHHHHHHHhcCceE
Q psy9627 85 TIIFAETKRKVDKITKSIQNYGWAA 109 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~~~~~ 109 (129)
.+++.... ..+++.+..++.|+.+
T Consensus 104 ~i~~~~g~-~~~~l~~~a~~~Gi~v 127 (144)
T 2d59_A 104 VVWFQYNT-YNREASKKADEAGLII 127 (144)
T ss_dssp EEEECTTC-CCHHHHHHHHHTTCEE
T ss_pred EEEECCCc-hHHHHHHHHHHcCCEE
Confidence 44444332 3566666666666654
No 301
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine deaminase, PLP, threonine DEH L-threonine metabolism; HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A* 2gn2_A*
Probab=28.17 E-value=58 Score=22.62 Aligned_cols=65 Identities=9% Similarity=0.056 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|......++..........+||=+.+-+.+..++..-+..|++|..+..+-....+...++.+
T Consensus 69 SfKdR~a~~~i~~a~~~~~~~~vv~~ssGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 133 (342)
T 2gn0_A 69 SFKIRGAFNKLSSLTEAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDY 133 (342)
T ss_dssp BTHHHHHHHHHHHSCHHHHHTCEEEECSSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHc
Confidence 34766555555432111234567777888889999998889999988877654445555555543
No 302
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=28.14 E-value=89 Score=20.16 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=19.8
Q ss_pred CCcEEEEeccc-------ccHHHHHHHHHhcCceE
Q psy9627 82 ENKTIIFAETK-------RKVDKITKSIQNYGWAA 109 (129)
Q Consensus 82 ~~~~iVF~nt~-------~~~~~l~~~L~~~~~~~ 109 (129)
..++-|||.++ +.|.++.+.|.+.|+.+
T Consensus 22 ~~~v~Vfggs~~~~~~~~~~A~~lg~~La~~g~~l 56 (199)
T 3qua_A 22 QWAVCVYCASGPTHPELLELAAEVGSSIAARGWTL 56 (199)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 35778898664 45667788888887765
No 303
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=28.09 E-value=95 Score=18.17 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=27.2
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCceEEEe
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWAAVGI 112 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~l 112 (129)
....++++-|++.+.-..+.+..+..|+++..+
T Consensus 52 ~g~~KiVlk~~~e~el~~l~~~a~~~gl~~~~i 84 (120)
T 1xty_A 52 QGQPKIIVKVNSLDEIISRAKKAETMNLPFSII 84 (120)
T ss_dssp TTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEE
Confidence 345677888999899999999999999987655
No 304
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=27.77 E-value=94 Score=20.31 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=23.3
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
..+.+.-|||.+-..|-.+...|++.|+.
T Consensus 185 ~~~~~~ai~~~~d~~A~g~~~al~~~g~~ 213 (288)
T 3gv0_A 185 SSDRPDGIVSISGSSTIALVAGFEAAGVK 213 (288)
T ss_dssp SSSCCSEEEESCHHHHHHHHHHHHTTTCC
T ss_pred CCCCCcEEEEcCcHHHHHHHHHHHHcCCC
Confidence 34567888998888888899999988764
No 305
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=27.76 E-value=70 Score=16.53 Aligned_cols=27 Identities=11% Similarity=-0.072 Sum_probs=13.7
Q ss_pred cEEEEe-cccccHHHHHHHHHhcCceEE
Q psy9627 84 KTIIFA-ETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 84 ~~iVF~-nt~~~~~~l~~~L~~~~~~~~ 110 (129)
++.||. +.+..|..+...|...|++..
T Consensus 5 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~ 32 (89)
T 3msz_A 5 KVKIYTRNGCPYCVWAKQWFEENNIAFD 32 (89)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCE
T ss_pred EEEEEEcCCChhHHHHHHHHHHcCCCce
Confidence 344554 345555555555555554443
No 306
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=27.64 E-value=91 Score=20.27 Aligned_cols=29 Identities=3% Similarity=0.080 Sum_probs=23.5
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
..+.+.-|||.+-..|..+...|++.|+.
T Consensus 185 ~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 185 LKNTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp SSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHcCCC
Confidence 35567888998888888899999888764
No 307
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=27.62 E-value=99 Score=20.02 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=23.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+...-|||.+-..+..+.+.|++.|+.
T Consensus 175 ~~~~~ai~~~~d~~a~g~~~al~~~g~~ 202 (277)
T 3cs3_A 175 QTEPVDVFAFNDEMAIGVYKYVAETNYQ 202 (277)
T ss_dssp CCSSEEEEESSHHHHHHHHHHHTTSSCC
T ss_pred CCCCcEEEEcChHHHHHHHHHHHHcCCC
Confidence 4578889998888888899999888764
No 308
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=27.52 E-value=1.9e+02 Score=21.44 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=31.8
Q ss_pred CcEEEEecccccHHHHHHHHHhc--------CceEEEecCCCChhHHHH
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNY--------GWAAVGIHGDKSQQERDY 123 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~R~~ 123 (129)
.++||.++|+.-+..+++.++.. .+.+..+.|+.+......
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 144 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMN 144 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHH
Confidence 58999999999999888888752 456888888877655433
No 309
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=27.50 E-value=42 Score=20.46 Aligned_cols=20 Identities=5% Similarity=0.167 Sum_probs=11.6
Q ss_pred cccccHHHHHHHHHhcCceE
Q psy9627 90 ETKRKVDKITKSIQNYGWAA 109 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~ 109 (129)
||++-|+.+++.|...|+.+
T Consensus 22 nT~~~A~~ia~~l~~~g~~v 41 (167)
T 1ykg_A 22 NARRVAEALRDDLLAAKLNV 41 (167)
T ss_dssp HHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHCCCce
Confidence 55566666666665555443
No 310
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=27.48 E-value=1.1e+02 Score=20.10 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=23.6
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
..+.+.-|||.+-..|-.+...|++.|+.
T Consensus 182 ~~~~~~ai~~~~d~~A~g~~~al~~~g~~ 210 (289)
T 3k9c_A 182 MPTPPTAVVAFNDRCATGVLDLLVRSGRD 210 (289)
T ss_dssp SSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 35677889998888888899999888764
No 311
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.43 E-value=95 Score=17.96 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=21.6
Q ss_pred cEEEEe-cccccHHHHHHHHHhcCceEEEecCCCC
Q psy9627 84 KTIIFA-ETKRKVDKITKSIQNYGWAAVGIHGDKS 117 (129)
Q Consensus 84 ~~iVF~-nt~~~~~~l~~~L~~~~~~~~~lhg~~~ 117 (129)
+++||. +.+-.|..+...|...+++...+.=+.+
T Consensus 28 ~vvvf~~~~Cp~C~~~~~~L~~~~i~~~~vdid~~ 62 (130)
T 2cq9_A 28 CVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLL 62 (130)
T ss_dssp SEEEEECSSCSHHHHHHHHHHHHTCCCEEEETTTS
T ss_pred cEEEEEcCCChHHHHHHHHHHHcCCCcEEEECcCC
Confidence 566666 5566777777777777766655554444
No 312
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=27.37 E-value=76 Score=16.86 Aligned_cols=24 Identities=0% Similarity=-0.187 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCceEEEecCCCCh
Q psy9627 95 VDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 95 ~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
.+.....+......+..+--.++.
T Consensus 34 ~~~~~~~l~~~~~dlii~d~~~~~ 57 (119)
T 2j48_A 34 GSTALDQLDLLQPIVILMAWPPPD 57 (119)
T ss_dssp HHHHHHHHHHHCCSEEEEECSTTC
T ss_pred HHHHHHHHHhcCCCEEEEecCCCC
Confidence 334444555556677766655543
No 313
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=27.31 E-value=48 Score=21.03 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=14.7
Q ss_pred cccccHHHHHHHHHhcCceEEE
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVG 111 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~ 111 (129)
||.+-|+.+++.|...|+.+..
T Consensus 34 nTe~~A~~ia~~l~~~g~~v~v 55 (191)
T 1bvy_F 34 TAEGTARDLADIAMSKGFAPQV 55 (191)
T ss_dssp HHHHHHHHHHHHHHTTTCCCEE
T ss_pred HHHHHHHHHHHHHHhCCCceEE
Confidence 5667777777777766665543
No 314
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=27.29 E-value=1.1e+02 Score=19.98 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=22.1
Q ss_pred ecccccHHHHHHHHHhcCceEEEecCC
Q psy9627 89 AETKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 89 ~nt~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
.+....++.+.+.+++.|+++..+|..
T Consensus 44 ~~~~~~~~~~~~~l~~~gl~~~~~~~~ 70 (269)
T 3ngf_A 44 FPYDFDADVIARELKQHNLTQVLFNMP 70 (269)
T ss_dssp CCTTSCHHHHHHHHHHTTCEEEEEECC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEEecC
Confidence 344567899999999999999998843
No 315
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=27.00 E-value=61 Score=21.35 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
..+..+++ ..+.+.-|||.+-..|-.+...|++.|+.
T Consensus 176 ~~~~~~l~----~~~~~~ai~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 176 LAASRLLA----LEVPPTAIITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp HHHHHHHH----SSSCCSEEEESSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHc----CCCCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 34444554 34667889998888888899999888764
No 316
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=26.75 E-value=49 Score=22.71 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=22.1
Q ss_pred EEEEecccccHHHHHHHHHhcCceEE
Q psy9627 85 TIIFAETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~~~~~~ 110 (129)
-.||.|+-..+++++..+++.|++..
T Consensus 121 ~~v~~n~~~~~~~~~~~~~e~Gv~pE 146 (284)
T 3chv_A 121 SRVYENPPDLVDWLAAQMRSYRVTPE 146 (284)
T ss_dssp SSEECCCHHHHHHHHHHHHHHTCEEE
T ss_pred CccccCCHHHHHHHHHHHHHcCCEEE
Confidence 46799999999999999999887643
No 317
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=26.67 E-value=88 Score=17.35 Aligned_cols=30 Identities=7% Similarity=0.180 Sum_probs=18.9
Q ss_pred cEEEEe-cccccHHHHHHHHHhcCceEEEec
Q psy9627 84 KTIIFA-ETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 84 ~~iVF~-nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
+++||. +.+..|..+...|...|++...+.
T Consensus 20 ~v~vy~~~~Cp~C~~~~~~L~~~~i~~~~~d 50 (113)
T 3rhb_A 20 TVVIYSKTWCSYCTEVKTLFKRLGVQPLVVE 50 (113)
T ss_dssp SEEEEECTTCHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCCCeEEE
Confidence 466665 556667777777777766654443
No 318
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Probab=26.63 E-value=1.6e+02 Score=20.19 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=33.5
Q ss_pred ccchHHHHHHHHHhhhcCCCCcEEE-E-ecccccHHHHHHHHHhcCceEEEecCCC
Q psy9627 63 EHEKENKLFGLLNDISSKDENKTII-F-AETKRKVDKITKSIQNYGWAAVGIHGDK 116 (129)
Q Consensus 63 ~~~k~~~L~~ll~~~~~~~~~~~iV-F-~nt~~~~~~l~~~L~~~~~~~~~lhg~~ 116 (129)
...|...+..++...... ..++|| | ..+-+.+..++..-+..|++|..+-.+-
T Consensus 48 gs~K~R~a~~~l~~a~~~-g~~~vv~~GassGN~g~alA~~a~~~G~~~~iv~p~~ 102 (338)
T 1tzj_A 48 GGNKTRKLEYLIPEALAQ-GCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENW 102 (338)
T ss_dssp CCHHHHHHHTTHHHHHHT-TCCEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred CchHHHHHHHHHHHHHHc-CCCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCC
Confidence 345665555455433212 234555 3 4777888888888888999988776543
No 319
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=26.59 E-value=1.5e+02 Score=20.04 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHhhhcC---CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSK---DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~---~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|...+..++...... .++.+||=..+-+.+..++..-+..|+++..+..+-....+...++.+
T Consensus 45 SfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 112 (313)
T 2q3b_A 45 SVKDRIGVAMLQAAEQAGLIKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAY 112 (313)
T ss_dssp BTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHC
Confidence 34665555555433211 233577778889999999999999999988877554444555555544
No 320
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=26.13 E-value=58 Score=23.44 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=23.1
Q ss_pred CcEEE-Ee----cccccHHHHHHHHHhcCceEEEe
Q psy9627 83 NKTII-FA----ETKRKVDKITKSIQNYGWAAVGI 112 (129)
Q Consensus 83 ~~~iV-F~----nt~~~~~~l~~~L~~~~~~~~~l 112 (129)
.+++| |. ||.+.|+.+++-|.+.|+++..+
T Consensus 266 ~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~ 300 (410)
T 4dik_A 266 GKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVY 300 (410)
T ss_dssp TEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cceeeEEecccChHHHHHHHHHHHHHhcCCceEEE
Confidence 35544 44 78899999999999999887643
No 321
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.79 E-value=75 Score=20.70 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=23.2
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
..+...-|||.+-..+-.+...|++.|+.
T Consensus 189 ~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 189 LQQPPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp SSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 34567788898888888899999888764
No 322
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=25.75 E-value=1.5e+02 Score=21.98 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=36.4
Q ss_pred CCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
++.+||=+.+-+.+..++..-+..|++|..+-..-....+...++.+
T Consensus 112 ~g~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 158 (527)
T 3pc3_A 112 PGYTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTL 158 (527)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHC
Confidence 45788888889999999998888999988777665555666666655
No 323
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=25.55 E-value=59 Score=22.64 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=22.1
Q ss_pred cEEEEecccccHHHHHHHHHhcCceEE
Q psy9627 84 KTIIFAETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 84 ~~iVF~nt~~~~~~l~~~L~~~~~~~~ 110 (129)
+-.||.||-+.++++...+++.|++..
T Consensus 144 ~d~v~~n~~~~i~~~~~~~~e~Gi~pE 170 (311)
T 3e02_A 144 RDFILSNTFSQIERGMTELGASGTRFE 170 (311)
T ss_dssp GGCEECCCHHHHHHHHHHHHTTTCEEE
T ss_pred CCceecCCHHHHHHHHHHHHHcCCeEE
Confidence 357899999999999999998887643
No 324
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=25.55 E-value=1.7e+02 Score=23.40 Aligned_cols=42 Identities=10% Similarity=-0.016 Sum_probs=27.4
Q ss_pred HHHHHHhhhcCCCCcEEEEecccccHHH----HHHHHHhcCceEEEecC
Q psy9627 70 LFGLLNDISSKDENKTIIFAETKRKVDK----ITKSIQNYGWAAVGIHG 114 (129)
Q Consensus 70 L~~ll~~~~~~~~~~~iVF~nt~~~~~~----l~~~L~~~~~~~~~lhg 114 (129)
|...+..+ ....+.|-+.+..-|.. .....+..|+.|+++.+
T Consensus 107 lp~~lnAL---~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~ 152 (822)
T 3jux_A 107 MPIYLNAL---IGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINS 152 (822)
T ss_dssp HHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred HHHHHHHh---cCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcC
Confidence 44444543 45677787877665554 44444567999999888
No 325
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.55 E-value=82 Score=21.36 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=23.9
Q ss_pred CcEEEEecc-----cccHHHHHHHHHhcCceEEEec
Q psy9627 83 NKTIIFAET-----KRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 83 ~~~iVF~nt-----~~~~~~l~~~L~~~~~~~~~lh 113 (129)
.++|||+-+ .+.+..+++.+++.|+.+..+.
T Consensus 108 ~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIg 143 (268)
T 4b4t_W 108 QRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIIN 143 (268)
T ss_dssp EEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEE
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 578889733 4567788999999999877665
No 326
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=25.17 E-value=89 Score=18.00 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=19.6
Q ss_pred cccccHHHHHHHHHhcCceEEEecCC
Q psy9627 90 ETKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 90 nt~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
.+...+.+..+.|++.|+++..+|=.
T Consensus 23 s~~~~a~eA~~~L~~~Gi~v~vi~~r 48 (118)
T 3ju3_A 23 SQKGPILDVIEDLKEEGISANLLYLK 48 (118)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccHHHHHHHHHHHHHCCCceEEEEEC
Confidence 56677777778888888888877755
No 327
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=25.08 E-value=74 Score=21.00 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=22.9
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEe
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGI 112 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~l 112 (129)
..++||..+..+..++.+.|.+.|.++...
T Consensus 173 ~~t~vl~~~~~~~~~i~~~L~~~g~~v~v~ 202 (259)
T 2e0n_A 173 HSTVVVMKLSTVRDELVSFLERYAKPFLYA 202 (259)
T ss_dssp CSEEEECCTTSSGGGHHHHHHHHCSCEEEE
T ss_pred CCEEEEEcccccHHHHHHHHHhCCCCEEEE
Confidence 468888888888888999888877664433
No 328
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=24.81 E-value=83 Score=16.47 Aligned_cols=24 Identities=13% Similarity=0.416 Sum_probs=20.6
Q ss_pred CCCcEEEEecccccHHHHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN 104 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~ 104 (129)
...-++|.|.+.+.++.+.+.+++
T Consensus 46 GDDTIlvi~r~~~~a~~l~~~i~~ 69 (71)
T 1b4b_A 46 GDDTCLIICRTPKDAKKVSNQLLS 69 (71)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHT
T ss_pred eCCEEEEEECCHHHHHHHHHHHHH
Confidence 567888999999999999998864
No 329
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=24.74 E-value=1.6e+02 Score=19.81 Aligned_cols=65 Identities=15% Similarity=0.062 Sum_probs=40.4
Q ss_pred cchHHHHHHHHHhhhcCCC-CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKDE-NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~-~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|...+..++........ .+.||=..+-+.+..++..-+..|++|..+..+-....+...++.+
T Consensus 45 SfK~R~a~~~l~~a~~~g~~~~~vv~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 110 (303)
T 1o58_A 45 SVKDRPALFMILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKML 110 (303)
T ss_dssp BTTHHHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHcCCCCCCEEEECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHc
Confidence 3466555555543321121 2446666778888899999889999988877554445555555544
No 330
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=24.58 E-value=1.7e+02 Score=19.94 Aligned_cols=65 Identities=20% Similarity=0.094 Sum_probs=41.9
Q ss_pred ccchHHHHHHHHHhhhcCCCCcEEEEe--cccccHHHHHHHHHhcCceEEEecCCCC-hhHHHHHHhcC
Q psy9627 63 EHEKENKLFGLLNDISSKDENKTIIFA--ETKRKVDKITKSIQNYGWAAVGIHGDKS-QQERDYVLKVG 128 (129)
Q Consensus 63 ~~~k~~~L~~ll~~~~~~~~~~~iVF~--nt~~~~~~l~~~L~~~~~~~~~lhg~~~-~~~R~~~l~~~ 128 (129)
...|...+..++..-... ...+||=+ .+-+.+..++..-+..|+++..+-.+-. ...+...++.+
T Consensus 51 gs~K~R~~~~~i~~a~~~-G~~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~ 118 (325)
T 1j0a_A 51 GGNKIRKLEYLLGDALSK-GADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIM 118 (325)
T ss_dssp CSTHHHHHHHHHHHHHHT-TCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHc-CCCEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHC
Confidence 456776666555532212 23456644 7788888899888899999887655444 55566666554
No 331
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=24.45 E-value=1.7e+02 Score=19.84 Aligned_cols=65 Identities=12% Similarity=-0.018 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHhhhcC---CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSK---DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~---~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|...+..++...... .++.+||=+.+-+.+..++..-+..|++|..+..+-....+...++.+
T Consensus 40 SfK~R~a~~~i~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 107 (316)
T 1y7l_A 40 SVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGL 107 (316)
T ss_dssp BTHHHHHHHHHHHHHHTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHc
Confidence 34665555555432211 223678878889999999999999999998877654445566666554
No 332
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=24.43 E-value=1.5e+02 Score=19.26 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=29.2
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCceEEEecCC--------CChhHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGD--------KSQQERDYVLK 126 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~--------~~~~~R~~~l~ 126 (129)
+...++|.-.|-+.|..+.+.+....+-|...|-+ |+++.|++.-+
T Consensus 43 ~Ik~iVVAS~sG~TA~k~~e~~~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~ 96 (201)
T 1vp8_A 43 GIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPPEVEEELRK 96 (201)
T ss_dssp TCCEEEEECSSSHHHHHHHHHCTTCEEEEEECCTTSSSTTCCSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCChHHHHHHHHhcCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHh
Confidence 55788888888888888888772223344455554 45555555443
No 333
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=24.19 E-value=1.6e+02 Score=19.42 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=7.8
Q ss_pred HHHHHHhcCceEEEecC
Q psy9627 98 ITKSIQNYGWAAVGIHG 114 (129)
Q Consensus 98 l~~~L~~~~~~~~~lhg 114 (129)
..+.+.+.|+++..+..
T Consensus 75 ~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 75 VVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp HHHHHHTTTCEEEEESS
T ss_pred HHHHHHHCCCeEEEECC
Confidence 33444444555544443
No 334
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=24.09 E-value=1.8e+02 Score=20.14 Aligned_cols=47 Identities=13% Similarity=0.025 Sum_probs=37.0
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
.+.+|=+.+-+.+.-++..-+..|++|..+=..-....|...++.++
T Consensus 87 ~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~G 133 (344)
T 3vc3_A 87 KTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFG 133 (344)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTT
T ss_pred CCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcC
Confidence 46788778888999999988899999888877766666777776653
No 335
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}
Probab=24.08 E-value=93 Score=21.82 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=34.9
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
.+.||=+.+-+.+..++..-+..|++|..+..+-....+...++.+
T Consensus 108 ~~~vv~assGN~g~a~A~aa~~~G~~~~iv~P~~~~~~k~~~~~~~ 153 (366)
T 3iau_A 108 DKGVITASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRAL 153 (366)
T ss_dssp HHCEEEECSSHHHHHHHHHHHHTTCCEEEEECTTCCHHHHHHHHHT
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhCCceEEEeCCCCCHHHHHHHHHC
Confidence 3567777888899999999889999998887765555566666554
No 336
>1xxa_A ARGR, arginine repressor; complex (DNA binding protein/peptide); HET: ARG; 2.20A {Escherichia coli K12} SCOP: d.74.2.1 PDB: 1xxb_A* 1xxc_A
Probab=24.04 E-value=92 Score=16.67 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=21.4
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY 105 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~ 105 (129)
...-++|.|.+...++.+.+.+++.
T Consensus 49 GDDTIlvi~r~~~~a~~l~~~i~~l 73 (78)
T 1xxa_A 49 GDDTIFTTPANGFTVKDLYEAILEL 73 (78)
T ss_dssp CSSEEEEEECTTCCHHHHHHHHHTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHHH
Confidence 4568889999999999999999753
No 337
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=23.81 E-value=2e+02 Score=20.39 Aligned_cols=48 Identities=21% Similarity=0.043 Sum_probs=37.8
Q ss_pred CCc-EEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcCC
Q psy9627 82 ENK-TIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVGS 129 (129)
Q Consensus 82 ~~~-~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~~ 129 (129)
..+ +||=..+-+.+..++..-+..|++|..+...-....|...++.++
T Consensus 110 ~~~~~vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~G 158 (398)
T 4d9i_A 110 GEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLG 158 (398)
T ss_dssp SCCCEEEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTT
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcC
Confidence 456 788788899999999998889999988877666667777776653
No 338
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=23.78 E-value=1.1e+02 Score=20.02 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=22.2
Q ss_pred CC-CcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DE-NKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~-~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+ .+.-|||.+-..+..+...|++.|+.
T Consensus 185 ~~~~~~ai~~~~d~~a~g~~~al~~~G~~ 213 (287)
T 3bbl_A 185 PERRPTAIMTLNDTMAIGAMAAARERGLT 213 (287)
T ss_dssp TTTSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 34 67888998888888888899887764
No 339
>4az3_B Lysosomal protective protein 20 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_B*
Probab=23.54 E-value=83 Score=19.06 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=14.0
Q ss_pred HHHHHHhcCceEEEecCCCC
Q psy9627 98 ITKSIQNYGWAAVGIHGDKS 117 (129)
Q Consensus 98 l~~~L~~~~~~~~~lhg~~~ 117 (129)
+...|.+.|+++..++|+.+
T Consensus 55 ~~~~Ll~~girVliy~Gd~D 74 (155)
T 4az3_B 55 YLKLLSSQKYQILLYNGDVD 74 (155)
T ss_dssp HHHHHHTCCCEEEEEEETTC
T ss_pred HHHHHHHcCceEEEEecccC
Confidence 44455567788888888766
No 340
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=23.50 E-value=1e+02 Score=19.85 Aligned_cols=28 Identities=11% Similarity=0.117 Sum_probs=22.9
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+...-|||.+-..+..+...+++.|+.
T Consensus 178 ~~~~~ai~~~~d~~a~g~~~al~~~g~~ 205 (276)
T 2h0a_A 178 ASPPLNVFAGADQVALGVLEEAVRLGLT 205 (276)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTSCT
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHcCCC
Confidence 4567888998888888899999888764
No 341
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=23.46 E-value=90 Score=20.45 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=22.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+.+.-|||.+-..|-.+...|++.|++
T Consensus 193 ~~~~~ai~~~~d~~A~g~~~al~~~G~~ 220 (289)
T 2fep_A 193 DKKPTAILSATDEMALGIIHAAQDQGLS 220 (289)
T ss_dssp SSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 4567788898888888888888887763
No 342
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=23.14 E-value=51 Score=19.66 Aligned_cols=51 Identities=8% Similarity=0.038 Sum_probs=23.3
Q ss_pred CceEEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceE
Q psy9627 53 NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAA 109 (129)
Q Consensus 53 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~ 109 (129)
.++--++.++...-...+.++.+. ..+.+++|..+. .+++.+..++.|+.+
T Consensus 70 ~vDlavi~vp~~~~~~v~~~~~~~----gi~~i~~~~g~~--~~~~~~~a~~~Gir~ 120 (140)
T 1iuk_A 70 PVDILDVFRPPSALMDHLPEVLAL----RPGLVWLQSGIR--HPEFEKALKEAGIPV 120 (140)
T ss_dssp CCSEEEECSCHHHHTTTHHHHHHH----CCSCEEECTTCC--CHHHHHHHHHTTCCE
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHc----CCCEEEEcCCcC--HHHHHHHHHHcCCEE
Confidence 344444444443333333344432 233444433322 356666666666654
No 343
>2zfz_A Arginine repressor; DNA binding protein, core, oligomeriza domain, alpha/beta topology, structural genomics; HET: ARG; 1.85A {Mycobacterium tuberculosis} PDB: 3bue_A 3cag_A*
Probab=23.12 E-value=97 Score=16.57 Aligned_cols=24 Identities=8% Similarity=0.249 Sum_probs=21.0
Q ss_pred CCCcEEEEecccccHHHHHHHHHh
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQN 104 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~ 104 (129)
...-++|.|.+...++.+.+.++.
T Consensus 54 GDDTIlvi~r~~~~a~~l~~~l~~ 77 (79)
T 2zfz_A 54 GDDTILVVAREPTTGAQLAGMFEN 77 (79)
T ss_dssp CSSEEEEEECTTCCHHHHHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHHh
Confidence 567888999999999999999865
No 344
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=23.03 E-value=70 Score=22.25 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=21.8
Q ss_pred EEEEecccccHHHHHHHHHhcCceEE
Q psy9627 85 TIIFAETKRKVDKITKSIQNYGWAAV 110 (129)
Q Consensus 85 ~iVF~nt~~~~~~l~~~L~~~~~~~~ 110 (129)
-.||.||-+.++++...+++.|++..
T Consensus 145 ~~v~~n~~~~i~~~~~~~~e~Gi~pE 170 (311)
T 3e49_A 145 DLVFKNTFADIEFILKTCGGNGTRFE 170 (311)
T ss_dssp GCEECCCHHHHHHHHHHHHTTTCEEE
T ss_pred CceecCCHHHHHHHHHHHHHcCCeeE
Confidence 46899999999999999998887643
No 345
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=23.00 E-value=1.2e+02 Score=18.80 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=15.0
Q ss_pred CcEEEEe-cccccHHHHHHHHHhcCce
Q psy9627 83 NKTIIFA-ETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 83 ~~~iVF~-nt~~~~~~l~~~L~~~~~~ 108 (129)
-++|.|+ +|.+.++.+.+.++...++
T Consensus 93 ~~aIYfv~Pt~enI~~i~~D~~~~~Y~ 119 (159)
T 1y9j_A 93 VPAVYFVMPTEENIDRLCQDLRNQLYE 119 (159)
T ss_dssp SCCEEEECCCHHHHHHHHHHHHHTCBS
T ss_pred CCEEEEecCCHHHHHHHHHHhhhcccC
Confidence 3555555 5666666666666554444
No 346
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=22.82 E-value=93 Score=20.29 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=22.4
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+...-|||.+-..|..+...|++.|+.
T Consensus 184 ~~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 184 ADRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp -CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 4567788998888888899999887764
No 347
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=22.81 E-value=1.6e+02 Score=18.87 Aligned_cols=28 Identities=4% Similarity=-0.111 Sum_probs=21.9
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+...-|||.+-..+..+...|++.|++
T Consensus 179 ~~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (275)
T 3d8u_A 179 DSSLNALVCSHEEIAIGALFECHRRVLK 206 (275)
T ss_dssp CTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 4567788898888888888888887764
No 348
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=22.79 E-value=2e+02 Score=21.54 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=0.0
Q ss_pred EEEEcCccchHHHHHHHHHhhhcC---CCCcEEEEecccccHHHHHHHHHh------cCceEEEecC
Q psy9627 57 VVEVCAEHEKENKLFGLLNDISSK---DENKTIIFAETKRKVDKITKSIQN------YGWAAVGIHG 114 (129)
Q Consensus 57 ~~~~~~~~~k~~~L~~ll~~~~~~---~~~~~iVF~nt~~~~~~l~~~L~~------~~~~~~~lhg 114 (129)
.+.-.++.-|-..+...+..+... ++.++++.+-|.+.++++.+.|.. .++.+..+|+
T Consensus 26 lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~~v~Tfhs 92 (647)
T 3lfu_A 26 LVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHG 92 (647)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTCEEEEHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccCCcEEEcHHH
No 349
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=22.67 E-value=98 Score=20.44 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=23.8
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
..+.+.-|||.+-..|-.+...|++.|+.
T Consensus 194 ~~~~~~ai~~~nd~~A~g~~~al~~~G~~ 222 (303)
T 3kke_A 194 KPDGPTAVVVASVNAAVGALSTALRLGLR 222 (303)
T ss_dssp STTSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 35678889998888888899999988764
No 350
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=22.46 E-value=1.3e+02 Score=20.27 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=22.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+.+.-|||.+-..|-.+.+.|++.|+.
T Consensus 240 ~~~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 240 GAKFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp TCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCeEEEECChHHHHHHHHHHHHcCCC
Confidence 4667889998888888888999888764
No 351
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=22.41 E-value=1.2e+02 Score=17.23 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=15.4
Q ss_pred EEEe-cccccHHHHHHHHHhcCceEEE
Q psy9627 86 IIFA-ETKRKVDKITKSIQNYGWAAVG 111 (129)
Q Consensus 86 iVF~-nt~~~~~~l~~~L~~~~~~~~~ 111 (129)
.||. ++|..|...-++|+..|++...
T Consensus 3 ~iY~~~~C~~C~kak~~L~~~gi~~~~ 29 (114)
T 1rw1_A 3 VLYGIKACDTMKKARTWLDEHKVAYDF 29 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCChHHHHHHHHHHHCCCceEE
Confidence 3444 4566666666677666665433
No 352
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=22.40 E-value=1.1e+02 Score=17.03 Aligned_cols=15 Identities=0% Similarity=-0.170 Sum_probs=6.4
Q ss_pred HHHHHHhcCceEEEe
Q psy9627 98 ITKSIQNYGWAAVGI 112 (129)
Q Consensus 98 l~~~L~~~~~~~~~l 112 (129)
+.+.....++|+..+
T Consensus 67 l~~~~g~~~vP~v~i 81 (114)
T 2hze_A 67 FEQITGGKTVPRIFF 81 (114)
T ss_dssp HHHHHSCCSSCEEEE
T ss_pred HHHHhCCCCcCEEEE
Confidence 333333344555444
No 353
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*
Probab=22.40 E-value=78 Score=21.66 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=38.9
Q ss_pred chHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 65 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 65 ~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
-|......++...........||=+.+-+.+..++..-+..|+++..+-.+-....+...++.+
T Consensus 56 ~KdRga~~~i~~~~~~~~~~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 119 (323)
T 1v71_A 56 FKFRGALNALSQLNEAQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGY 119 (323)
T ss_dssp THHHHHHHHHTTCCHHHHHHCEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEeCCCcHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHc
Confidence 3554444444322111233567777788888888888888899988766544445555555554
No 354
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=22.11 E-value=77 Score=25.59 Aligned_cols=39 Identities=3% Similarity=0.121 Sum_probs=28.7
Q ss_pred CCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 80 KDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 80 ~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
....+++|.|++.-..+|..+..+..++++..+||+...
T Consensus 198 g~~~rvLIVvP~sLl~Qw~~E~~~~f~l~v~v~~~~~~~ 236 (968)
T 3dmq_A 198 GAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYA 236 (968)
T ss_dssp SSCCCEEEECCTTTHHHHHHHHHHHSCCCCEECCHHHHH
T ss_pred CCCCeEEEEeCHHHHHHHHHHHHHHhCCCEEEEccchhh
Confidence 345699999999555555555557789999999887543
No 355
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=21.98 E-value=1.9e+02 Score=19.50 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHhhhcC---CCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSK---DENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~---~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|......++...... .++.+||=+.+-+.+..++..-+..|+++..+..+-....+...++.+
T Consensus 39 SfK~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 106 (303)
T 2v03_A 39 SVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAY 106 (303)
T ss_dssp BTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHc
Confidence 34665555555432211 233678878889999999999999999998877654444555555544
No 356
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=21.63 E-value=1.3e+02 Score=21.59 Aligned_cols=48 Identities=21% Similarity=0.152 Sum_probs=31.6
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG 114 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg 114 (129)
.=|-..+..++..+......++++.+.|.+.++.+.+.+ +..+..+|+
T Consensus 56 TGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~---~~~~~T~h~ 103 (459)
T 3upu_A 56 TGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS---GKEASTIHS 103 (459)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH---SSCEEEHHH
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh---ccchhhHHH
Confidence 346666666665553333357888999999998888776 455555554
No 357
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=21.61 E-value=1.4e+02 Score=17.78 Aligned_cols=64 Identities=5% Similarity=0.107 Sum_probs=42.6
Q ss_pred CCceEEEEEcCccchHHHHHHHHHhhhcC-CCCcEEEEecc-----cccHHHHHHHHH-hcCceEEEecCC
Q psy9627 52 HNIQQVVEVCAEHEKENKLFGLLNDISSK-DENKTIIFAET-----KRKVDKITKSIQ-NYGWAAVGIHGD 115 (129)
Q Consensus 52 ~~i~~~~~~~~~~~k~~~L~~ll~~~~~~-~~~~~iVF~nt-----~~~~~~l~~~L~-~~~~~~~~lhg~ 115 (129)
+.++..-+.++.+..+..+..+|+.-... +.....+|||. ......+++.-+ +.|+=...+.+.
T Consensus 50 P~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e 120 (125)
T 3m95_A 50 GDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDE 120 (125)
T ss_dssp CCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEESS
T ss_pred ccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecCc
Confidence 45666666788888888888888755433 34567888864 455677887776 456655555543
No 358
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=21.47 E-value=1.2e+02 Score=20.63 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=26.1
Q ss_pred HHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 69 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 69 ~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+..+++. .+.+.-|||.+-..|-.+...|++.|+.
T Consensus 258 ~~~~ll~~----~~~~~ai~~~nD~~A~g~~~al~~~G~~ 293 (366)
T 3h5t_A 258 VAKELLET----HPDLTAVLCTVDALAFGVLEYLKSVGKS 293 (366)
T ss_dssp HHHHHHHH----CTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcC----CCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 34445543 4567889998888888888888888764
No 359
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=21.33 E-value=1.3e+02 Score=17.25 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=18.9
Q ss_pred cEEEEe-cccccHHHHHHHHHhcCceEEEe
Q psy9627 84 KTIIFA-ETKRKVDKITKSIQNYGWAAVGI 112 (129)
Q Consensus 84 ~~iVF~-nt~~~~~~l~~~L~~~~~~~~~l 112 (129)
.+.||. ++|..|...-..|.+.|++...+
T Consensus 6 ~i~iY~~~~C~~C~ka~~~L~~~gi~y~~~ 35 (120)
T 2kok_A 6 SVTIYGIKNCDTMKKARIWLEDHGIDYTFH 35 (120)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCCEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCcEEEE
Confidence 455665 45577777777777777765433
No 360
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=21.10 E-value=1.4e+02 Score=20.58 Aligned_cols=31 Identities=6% Similarity=0.068 Sum_probs=24.2
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceEEEec
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lh 113 (129)
+-++.+|...+.++.+.+.|++.|+....++
T Consensus 299 g~vial~~~~~~~~~~~~~l~~~g~~~~~~~ 329 (337)
T 2pg9_A 299 DCGIALSFDAQSTKTLKNRWADLGIELLYQE 329 (337)
T ss_dssp SEEEEEECSHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3457788877889999999999998865443
No 361
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=20.97 E-value=2.2e+02 Score=19.89 Aligned_cols=64 Identities=9% Similarity=-0.065 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCceEEEecCCCChhHHHHHHhcC
Q psy9627 64 HEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLKVG 128 (129)
Q Consensus 64 ~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~~ 128 (129)
..|..-+..++.... .....+||=+.+-+.+..++..-+..|++|..+-.+-....+.+.++.+
T Consensus 75 SfK~Rga~~~i~~a~-~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 138 (364)
T 4h27_A 75 SFKIRGIGHFCKRWA-KQGCAHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNE 138 (364)
T ss_dssp BTHHHHHHHHHHHHH-HTTCCEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHH-hcCCCEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHc
Confidence 346654444444332 1334677777888888888888888899988777665555666666654
No 362
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=20.91 E-value=1.3e+02 Score=22.25 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=29.2
Q ss_pred CCcEEEEecccccHHHHHHHHHhc----CceEEEecCC
Q psy9627 82 ENKTIIFAETKRKVDKITKSIQNY----GWAAVGIHGD 115 (129)
Q Consensus 82 ~~~~iVF~nt~~~~~~l~~~L~~~----~~~~~~lhg~ 115 (129)
..+++|-++|+..++.+.+.+... ++++..+.|+
T Consensus 47 ~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr 84 (551)
T 3crv_A 47 KPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGK 84 (551)
T ss_dssp CSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccc
Confidence 579999999999999999998765 7888888773
No 363
>1vhf_A Periplasmic divalent cation tolerance protein; structural genomics, unknown function; 1.54A {Thermotoga maritima} SCOP: d.58.5.2
Probab=20.82 E-value=1.1e+02 Score=17.79 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=17.6
Q ss_pred EEEEe--cccccHHHHHHHHHhcCce
Q psy9627 85 TIIFA--ETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 85 ~iVF~--nt~~~~~~l~~~L~~~~~~ 108 (129)
++||+ ++.+.|+.++..|-+.++.
T Consensus 4 ~~V~tT~p~~e~A~~iA~~Lve~rLA 29 (113)
T 1vhf_A 4 ILVYSTFPNEEKALEIGRKLLEKRLI 29 (113)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHTTSC
T ss_pred EEEEEecCCHHHHHHHHHHHHHCCeE
Confidence 34554 7788899999999776543
No 364
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=20.75 E-value=1.5e+02 Score=20.42 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=28.1
Q ss_pred CcEEEEecccccHHHHHHHHHhcCce---EEEecCCCCh
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWA---AVGIHGDKSQ 118 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~---~~~lhg~~~~ 118 (129)
.-+|||+++...+..+.+.+....+. .+..+|.++.
T Consensus 142 SGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~ 180 (325)
T 1v9f_A 142 TGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 180 (325)
T ss_dssp EEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCC
T ss_pred eeEEEEEcCHHHHHHHHHHHHcCCeeEEEEEEEeCCCCC
Confidence 45789999999999999998877664 5566776654
No 365
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=20.71 E-value=1.1e+02 Score=20.43 Aligned_cols=31 Identities=3% Similarity=-0.042 Sum_probs=20.6
Q ss_pred CcEEEEecccc---cHHHHHHHHHhcCceEEEec
Q psy9627 83 NKTIIFAETKR---KVDKITKSIQNYGWAAVGIH 113 (129)
Q Consensus 83 ~~~iVF~nt~~---~~~~l~~~L~~~~~~~~~lh 113 (129)
.+++|+|-+-+ ..=-++..|...|+.|..+.
T Consensus 86 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~ 119 (259)
T 3d3k_A 86 PTVALLCGPHVKGAQGISCGRHLANHDVQVILFL 119 (259)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEE
Confidence 47888884433 33457777888888876664
No 366
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=20.68 E-value=1.1e+02 Score=20.72 Aligned_cols=28 Identities=11% Similarity=0.060 Sum_probs=22.3
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+.+.-|||.+-..+-.+...|++.|+.
T Consensus 236 ~~~~~ai~~~nd~~A~g~~~al~~~G~~ 263 (340)
T 1qpz_A 236 PHRPTAVFCGGDIMAMGALCAADEMGLR 263 (340)
T ss_dssp SSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 4567889998888888888889887764
No 367
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=20.65 E-value=1.2e+02 Score=16.57 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=4.7
Q ss_pred CceEEEecC
Q psy9627 106 GWAAVGIHG 114 (129)
Q Consensus 106 ~~~~~~lhg 114 (129)
++|+..+-|
T Consensus 77 ~vP~l~i~~ 85 (103)
T 3nzn_A 77 SFPTTIIND 85 (103)
T ss_dssp CSCEEEETT
T ss_pred ccCEEEECC
Confidence 456655544
No 368
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=20.61 E-value=1.1e+02 Score=19.91 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=21.4
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+.+.-|||.+-..+..+...|++.|+.
T Consensus 182 ~~~~~ai~~~~d~~A~g~~~al~~~g~~ 209 (285)
T 3c3k_A 182 AVKPDAIFAISDVLAAGAIQALTESGLS 209 (285)
T ss_dssp SSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCeEEEECCHHHHHHHHHHHHHcCCC
Confidence 4557788888887888888888887764
No 369
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=20.56 E-value=1.4e+02 Score=17.79 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=20.1
Q ss_pred cEEEEe-cccccHHHHHHHHHhcCceEEEecCC
Q psy9627 84 KTIIFA-ETKRKVDKITKSIQNYGWAAVGIHGD 115 (129)
Q Consensus 84 ~~iVF~-nt~~~~~~l~~~L~~~~~~~~~lhg~ 115 (129)
+++||. +.+-.|..+...|...+++...+-=+
T Consensus 50 ~Vvvf~~~~Cp~C~~~k~~L~~~~i~~~~vdId 82 (146)
T 2ht9_A 50 CVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELD 82 (146)
T ss_dssp SEEEEECTTCHHHHHHHHHHHHHTCCCEEEEGG
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCCeEEEECc
Confidence 566666 55666777777777766665544433
No 370
>2owl_A Recombination-associated protein RDGC; replication, RECA; 2.40A {Escherichia coli}
Probab=20.56 E-value=1.2e+02 Score=20.89 Aligned_cols=41 Identities=5% Similarity=0.068 Sum_probs=33.1
Q ss_pred CCCcEEEEecccccHHHHHHHHHhc--CceEEEecCCCChhHH
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNY--GWAAVGIHGDKSQQER 121 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R 121 (129)
..+-++|.+.|.+.|+.+-..|++. ++++..++-..++...
T Consensus 133 ~~~~l~VdaaS~k~aE~~l~lLrktlgsLpv~pl~~~~~p~~~ 175 (303)
T 2owl_A 133 VNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELT 175 (303)
T ss_dssp TTTEEEECCSCHHHHHHHHHHHHHHHSCCCEEECCBSSCHHHH
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHhhCCCccccCCCCCCHHHH
Confidence 4466677778899999999999874 6999999988887654
No 371
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=20.54 E-value=2.9e+02 Score=21.15 Aligned_cols=46 Identities=7% Similarity=0.134 Sum_probs=36.2
Q ss_pred EEEEEcCccchHHHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhc
Q psy9627 56 QVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY 105 (129)
Q Consensus 56 ~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~ 105 (129)
+...-+.+.-|-..+..++... ..++||-+++...|..+++.|+..
T Consensus 31 ~~l~g~tgs~kt~~~a~~~~~~----~~~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 31 VTLLGATGTGKTVTMAKVIEAL----GRPALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH----TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecCHHHHHHHHHHHHHH
Confidence 3455567777877777777753 458999999999999999999875
No 372
>1uku_A CUTA1, periplasmic divalent cation tolerance protein CUT; copper tolerance, structural genomics, metal binding P; 1.45A {Pyrococcus horikoshii} SCOP: d.58.5.2 PDB: 1umj_A 1v99_A* 1v9b_A 1j2v_A 2e66_A
Probab=20.48 E-value=1.2e+02 Score=17.28 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=16.6
Q ss_pred EEecccccHHHHHHHHHhcCce
Q psy9627 87 IFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 87 VF~nt~~~~~~l~~~L~~~~~~ 108 (129)
+-|++.+.|+.++..|-+.++.
T Consensus 6 ~T~p~~~~A~~ia~~Lve~rLA 27 (102)
T 1uku_A 6 TTFPDWESAEKVVKTLLKERLI 27 (102)
T ss_dssp EEESSHHHHHHHHHHHHHTTSC
T ss_pred EecCCHHHHHHHHHHHHHCCeE
Confidence 3447788999999999776543
No 373
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=20.47 E-value=1.5e+02 Score=19.97 Aligned_cols=37 Identities=5% Similarity=0.016 Sum_probs=26.4
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
..+..+++. .+.+.-|||.+-..|-.+...|++.|+.
T Consensus 236 ~~~~~ll~~----~~~~~ai~~~nd~~A~g~~~al~~~g~~ 272 (344)
T 3kjx_A 236 EMTQAMLER----SPDLDFLYYSNDMIAAGGLLYLLEQGID 272 (344)
T ss_dssp HHHHHHHHH----STTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhc----CCCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 334455543 4567888898888888888888888764
No 374
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=20.40 E-value=1.1e+02 Score=19.80 Aligned_cols=28 Identities=11% Similarity=0.060 Sum_probs=21.7
Q ss_pred CCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 81 DENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 81 ~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
.+...-|||.+-..+..+...|++.|++
T Consensus 185 ~~~~~ai~~~~d~~a~g~~~al~~~G~~ 212 (289)
T 1dbq_A 185 PHRPTAVFCGGDIMAMGALCAADEMGLR 212 (289)
T ss_dssp SSCCSEEEESCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHcCCC
Confidence 4567778888888888888888887764
No 375
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=20.21 E-value=1.5e+02 Score=20.13 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
..+..+++. .+.+.-|||.+-..|-.+...|++.|+.
T Consensus 239 ~~~~~ll~~----~~~~~ai~~~nD~~A~g~~~al~~~G~~ 275 (355)
T 3e3m_A 239 AAAELILQE----YPDTDCIFCVSDMPAFGLLSRLKSIGVA 275 (355)
T ss_dssp HHHHHHHHH----CTTCCEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcC----CCCCcEEEECChHHHHHHHHHHHHcCCC
Confidence 334445543 4567889998888888888888887764
No 376
>2nuh_A Periplasmic divalent cation tolerance protein; CUTA, unknown function; 1.39A {Xylella fastidiosa}
Probab=20.11 E-value=1.2e+02 Score=17.86 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=17.8
Q ss_pred cEEEEe--cccccHHHHHHHHHhcCc
Q psy9627 84 KTIIFA--ETKRKVDKITKSIQNYGW 107 (129)
Q Consensus 84 ~~iVF~--nt~~~~~~l~~~L~~~~~ 107 (129)
-++||+ ++.+.|+.++..|-+.++
T Consensus 5 ~~lV~tT~p~~e~A~~iA~~Lve~rL 30 (118)
T 2nuh_A 5 VYLIFSTCPDLPSAEIISRVLVQERL 30 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred EEEEEEecCCHHHHHHHHHHHHHCCe
Confidence 355665 677889999999976654
No 377
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=20.11 E-value=1.2e+02 Score=19.74 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=15.0
Q ss_pred CcEEEEecccccHHHHHHHHHhcCceE
Q psy9627 83 NKTIIFAETKRKVDKITKSIQNYGWAA 109 (129)
Q Consensus 83 ~~~iVF~nt~~~~~~l~~~L~~~~~~~ 109 (129)
++.|+.+-....++.+.+.|+..|..+
T Consensus 6 g~~vlvtRp~~~~~~l~~~L~~~G~~~ 32 (254)
T 4es6_A 6 GWRLLLTRPDEECAALAASLGEAGVHS 32 (254)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred CCEEEEeCChHHhHHHHHHHHHCCCcE
Confidence 344555555555566666666655543
No 378
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=20.10 E-value=1.4e+02 Score=20.15 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhcCCCCcEEEEecccccHHHHHHHHHhcCce
Q psy9627 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWA 108 (129)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~iVF~nt~~~~~~l~~~L~~~~~~ 108 (129)
..+..+++. .+.+.-|||.+-..|-.+...|++.|+.
T Consensus 228 ~~~~~ll~~----~~~~~ai~~~nD~~A~g~~~al~~~G~~ 264 (339)
T 3h5o_A 228 DMLDRALAE----RPDCDALFCCNDDLAIGALARSQQLGIA 264 (339)
T ss_dssp HHHHHHHHH----CTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcC----CCCCcEEEECChHHHHHHHHHHHHcCCC
Confidence 334455543 4567888998888888888899888764
No 379
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=20.04 E-value=30 Score=19.71 Aligned_cols=31 Identities=6% Similarity=0.098 Sum_probs=19.3
Q ss_pred EecccccHHHHHHHHHhcCceEEEecCCCCh
Q psy9627 88 FAETKRKVDKITKSIQNYGWAAVGIHGDKSQ 118 (129)
Q Consensus 88 F~nt~~~~~~l~~~L~~~~~~~~~lhg~~~~ 118 (129)
|......-..+++..++.|+.+-.++|+++.
T Consensus 28 f~g~~~~~PiIs~l~~~~~v~vnIL~g~I~~ 58 (106)
T 3dhx_A 28 FTGQSVDAPLLSETARRFNVNNNIISAQMDY 58 (106)
T ss_dssp EEEECTTCCHHHHHHHHSCCEEEEEEEEEEE
T ss_pred EcCCccChhHHHHHHHHHCCCEEEEEEEeEE
Confidence 4443334445666667777777777777654
No 380
>1o5j_A Periplasmic divalent cation tolerance protein; TM1056, struc genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.5.2
Probab=20.00 E-value=1.2e+02 Score=17.68 Aligned_cols=27 Identities=7% Similarity=0.227 Sum_probs=20.2
Q ss_pred CCCcEEEEe--cccccHHHHHHHHHhcCc
Q psy9627 81 DENKTIIFA--ETKRKVDKITKSIQNYGW 107 (129)
Q Consensus 81 ~~~~~iVF~--nt~~~~~~l~~~L~~~~~ 107 (129)
...-++||+ ++.+.|+.++..|-+.++
T Consensus 10 ~~~~~lV~tT~p~~e~A~~iA~~Lve~rL 38 (113)
T 1o5j_A 10 HHHMILVYSTFPNEEKALEIGRKLLEKRL 38 (113)
T ss_dssp CCCEEEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred cceEEEEEEecCCHHHHHHHHHHHHhCCe
Confidence 345677776 667889999999977654
Done!