RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9627
(129 letters)
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 181 bits (463), Expect = 3e-57
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 8 MTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE 67
+T +P+ Q LM+SAT+P E+Q++A +FL +Y+ + IG + A +++Q + ++ K
Sbjct: 231 VTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKYAKR 289
Query: 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
+KL +L++ + TI+F ETKR D + + + IHGD+ Q +R+ L+
Sbjct: 290 SKLIEILSE----QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALR 344
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 178 bits (455), Expect = 5e-56
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 8 MTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE 67
M K R +M+SAT+P+E+Q LA DFLD YI + +G + S + NI Q V E +K
Sbjct: 205 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKR 263
Query: 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
+ L LLN ++ T++F ETK+ D + + + G+A IHGD+SQ++R+ L
Sbjct: 264 SFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 320
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 123 bits (310), Expect = 6e-37
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 30 LAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFA 89
+ + N+ S + NI Q V E +K + L LLN ++ T++F
Sbjct: 1 MHHH----HHHENLY-FQGSTSENITQKVVWVEESDKRSFLLDLLNATG--KDSLTLVFV 53
Query: 90 ETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
ETK+ D + + + G+A IHGD+SQ++R+ L
Sbjct: 54 ETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 90
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 123 bits (311), Expect = 6e-37
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 33 DFLDSYIQINIGSLTL------SANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTI 86
+++G+ L +A+ ++ Q VE E K L L K +
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQ----KTPPPVL 58
Query: 87 IFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
IFAE K VD I + + G AV IHG K Q+ER ++
Sbjct: 59 IFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIE 98
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 101 bits (254), Expect = 9e-27
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS-LTLSANHNIQQVVEVCAEHEKENKL 70
P Q L++SAT+P V++ L +IN+ LTL I Q E +K
Sbjct: 193 PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTL---KGITQYYAFVEERQK---- 245
Query: 71 FGLLNDISSKDE-NKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
LN + SK + N+ IIF + +V+ + K I + G++ H QQER+ V
Sbjct: 246 LHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFH 302
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 99 bits (250), Expect = 5e-26
Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQV-VEVCAEHEKENKL 70
+ Q++++SAT+ V+K AE F + +I + + LS I+Q+ ++ +E K
Sbjct: 290 RNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVE-GIKQLYMDCQSEEHK---- 344
Query: 71 FGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
+ +L ++ ++IIF + K ++I + + G + G+ +RD ++
Sbjct: 345 YNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMD 401
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 98.4 bits (246), Expect = 1e-25
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQV-VEVCAEHEKENKL 70
P QV++ SAT P E+ ++ F+ I+I + L+ I+Q V V E K
Sbjct: 209 PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLE-GIKQFFVAVEREEWK---- 263
Query: 71 FGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
F L D+ + + +IF TKRKVD +T+ ++ + +HGD Q+ER+ ++K
Sbjct: 264 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 320
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 97.2 bits (243), Expect = 3e-25
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQV-VEVCAEHEKENKL 70
+ QV++ SAT P +V ++ + F+ I+I + L+ I+Q + V E K
Sbjct: 213 SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLE-GIRQFYINVEREEWK---- 267
Query: 71 FGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
L D+ + + +IF T+RKVD +T+ + + +HGD Q+ERD +++
Sbjct: 268 LDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMR 324
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 96.9 bits (242), Expect = 4e-25
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINI---GSLTLSANHNIQQVVEVCAEHEKEN 68
++QV+M+SAT +E++ + F+ ++I + LTL H +QQ ++EK
Sbjct: 183 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTL---HGLQQYYVKLKDNEKNR 239
Query: 69 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
KLF LL + N+ +IF ++ ++ + + + + A+ IH Q+ER +
Sbjct: 240 KLFDLL---DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 294
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 95.3 bits (238), Expect = 1e-24
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQV-VEVCAEHEKENKL 70
P QV++ SAT P +V ++ F+ + ++I + L+ I+Q V V E+E K
Sbjct: 192 PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLE-GIKQFYVNV---EEEEYK- 246
Query: 71 FGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
+ L D+ S + +IF T+RKV+++T ++N + I+ D QQERD ++K
Sbjct: 247 YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMK 303
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 93.0 bits (232), Expect = 8e-24
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 71
D+++L++SAT PRE+ LA+ ++ Y I N NI+Q E+E+ F
Sbjct: 177 KDKRILLFSATMPREILNLAKKYMGDYSFIKA-----KINANIEQSYVEVNENER----F 227
Query: 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
L + E ++F +TKR ++ +++ G+ A IHGD SQ +R+ V++
Sbjct: 228 EALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIR 282
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 91.8 bits (229), Expect = 3e-23
Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQV-VEVCAEHEKENKL 70
+ Q+L++SAT+ V K A+ + I + + + I+Q V ++ K
Sbjct: 199 RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD-TIKQYYVLC---SSRDEKF 254
Query: 71 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
L N + + +IF T++ + + G + G+ ++R V++
Sbjct: 255 QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 310
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA,
N project on protein structural and functional analyses;
2.40A {Dugesia japonica} SCOP: c.37.1.19
Length = 253
Score = 89.5 bits (223), Expect = 4e-23
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 8 MTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVV 58
M +RQ LM+SAT+P+E+QKLA DFL +YI + +G + S + +I+Q +
Sbjct: 204 MPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG-STSDSIKQEI 253
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 91.5 bits (228), Expect = 4e-23
Identities = 26/117 (22%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQV-VEVCAEHEKENKL 70
D Q++++SAT+ V++ A+ + + + + + ++ + I+Q+ ++ E +K
Sbjct: 176 KDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVD-AIKQLYMDCKNEADK---- 230
Query: 71 FGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
F +L ++ +IIF TK+ + + +++ G +HGD QERD ++
Sbjct: 231 FDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLID 287
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 90.1 bits (224), Expect = 2e-22
Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQV-VEVCAEHEKENKL 70
+ Q+L++SAT+ V K A+ + I + + + I+Q V ++ K
Sbjct: 266 RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD-TIKQYYVLC---SSRDEKF 321
Query: 71 FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
L N + + +IF T++ + + G + G+ ++R V++
Sbjct: 322 QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 377
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 86.4 bits (215), Expect = 2e-21
Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKENKLF 71
+ ++SAT P E++K+ +DF+ +Y +I N++ ++
Sbjct: 159 NRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKF-----VHVKDDWR 209
Query: 72 GLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
+ + + I+F T+ +V K+ + N A+ + GD Q R+ +
Sbjct: 210 SKVQALRENKDKGVIVFVRTRNRVAKLVRLFDN----AIELRGDLPQSVRNRNID 260
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 85.3 bits (211), Expect = 1e-20
Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL---TLSANHNIQQVVEVCAEHEKE 67
+ + L++SAT +VQKLA + ++ + + ++ A+ I Q V + +
Sbjct: 211 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS 270
Query: 68 NKL---FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQER 121
K IIFA T + + ++N + HG +Q +R
Sbjct: 271 IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 330
Query: 122 DYVLK 126
++K
Sbjct: 331 TSLVK 335
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding,
hydrolase, nucleotide- RNA-binding, methylation, mRNA
processing, mRNA S nucleus; HET: ADP; 2.60A {Homo
sapiens}
Length = 242
Score = 82.2 bits (204), Expect = 2e-20
Identities = 28/38 (73%), Positives = 33/38 (86%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTL 48
+PDRQ LMWSATWP+EV++LAEDFL YI INIG+L L
Sbjct: 205 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALEL 242
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 84.1 bits (208), Expect = 3e-20
Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSL---TLSANHNIQQVVEVCAEHEKE 67
+ + L++SAT +VQKLA + ++ + + ++ A+ I Q V + +
Sbjct: 262 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS 321
Query: 68 NKL---FGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY---GWAAVGIHGDKSQQER 121
K IIFA T + + ++N + HG +Q +R
Sbjct: 322 IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 381
Query: 122 DYVLK 126
++K
Sbjct: 382 TSLVK 386
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 76.7 bits (189), Expect = 1e-17
Identities = 16/132 (12%), Positives = 40/132 (30%), Gaps = 29/132 (21%)
Query: 12 PDRQVLMWSATWPREVQKLAED---------------------FLDSYIQINIGSLTLSA 50
+ +S ++ + ++ + +G L S
Sbjct: 169 EEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLV-SV 227
Query: 51 NHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAV 110
NI V EK +L + D +IFA+T+ + ++ + ++ + +
Sbjct: 228 ARNITHVRISSRSKEKLVELLEIFRD-------GILIFAQTEEEGKELYEYLKRFKFNVG 280
Query: 111 GIHGDKSQQERD 122
+ + D
Sbjct: 281 ETWSEFEKNFED 292
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX,
structural genomics, structural genomi consortium, SGC,
ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Length = 228
Score = 71.4 bits (176), Expect = 2e-16
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 43
PDRQ +M SATWP V++LA +L + + +
Sbjct: 197 PDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase;
RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo
sapiens} SCOP: c.37.1.19
Length = 172
Score = 68.0 bits (167), Expect = 1e-15
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 52 HNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVG 111
H +QQ ++EK KLF LL+ + N+ +IF ++ ++ + + + + A+
Sbjct: 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEF---NQVVIFVKSVQRCIALAQLLVEQNFPAIA 60
Query: 112 IHGDKSQQERDYVLK 126
IH Q+ER +
Sbjct: 61 IHRGMPQEERLSRYQ 75
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase;
1.95A {Bacillus subtilis}
Length = 163
Score = 66.0 bits (162), Expect = 5e-15
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 46 LTLSANHNIQQVVEVCAEHEKENKLFGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQN 104
LT NI+ V E K F LL D+ +++ + IIF TK V+++T + +
Sbjct: 5 LTTR---NIEHAVIQVREENK----FSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDD 57
Query: 105 YGWAAVGIHGDKSQQERDYVLK 126
G+ IHG Q++R V+
Sbjct: 58 LGYPCDKIHGGMIQEDRFDVMN 79
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 66.1 bits (162), Expect = 2e-14
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 45
+ M+SAT+ +V++ + LD+ I ++IG+
Sbjct: 209 HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural
genomics, structural consortium, SGC, alternative
initiation, ATP-binding, devel protein; 2.80A {Homo
sapiens}
Length = 175
Score = 63.0 bits (154), Expect = 1e-13
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 46 LTLSANHNIQQV-VEVCAEHEKENKLFGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQ 103
LTL+ NI+Q V +K + L +I S + IIF +T+R +T +
Sbjct: 3 LTLN---NIRQYYVLCEHRKDK----YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMI 55
Query: 104 NYGWAAVGIHGDKSQQERDYVLK 126
G + G+ + ++R +++
Sbjct: 56 QDGHQVSLLSGELTVEQRASIIQ 78
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein,
translation; 1.75A {Saccharomyces cerevisiae} SCOP:
c.37.1.19
Length = 165
Score = 62.2 bits (152), Expect = 2e-13
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 52 HNIQQV-VEVCAEHEKENKLFGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQNYGWAA 109
I+Q V V E+E K + L D+ S + +IF T+RKV+++T ++N +
Sbjct: 2 EGIKQFYVNV---EEEEYK-YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTV 57
Query: 110 VGIHGDKSQQERDYVLK 126
I+ D QQERD ++K
Sbjct: 58 SAIYSDLPQQERDTIMK 74
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA
recognition motif, ATP-BIND helicase,
nucleotide-binding; 2.80A {Thermus thermophilus}
Length = 300
Score = 60.9 bits (148), Expect = 3e-12
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 53 NIQQVVEVCAEHEKENKLFGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVG 111
++ + +L+D+ ++ ++F TK + ++I + + G A
Sbjct: 2 TYEEEAVPAPVRGR----LEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQA 57
Query: 112 IHGDKSQQERDYVLK 126
+HGD SQ ER+ V+
Sbjct: 58 LHGDMSQGERERVMG 72
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity
A; hydrolase inhibitor-hydrolase complex, DEAD box RNA
helicase; 2.90A {Escherichia coli}
Length = 170
Score = 58.3 bits (142), Expect = 7e-12
Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 53 NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGI 112
I Q + E + L L++ + + ++I+F + +V ++ ++ G +
Sbjct: 3 KIHQWYYRADDLEHKTAL--LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYL 60
Query: 113 HGDKSQQERDYVLK 126
G+ Q +R+ +K
Sbjct: 61 EGEMVQGKRNEAIK 74
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer,
ATP-binding, helicase, hydrolase, nucleotide-binding;
2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Length = 212
Score = 58.8 bits (143), Expect = 8e-12
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 53 NIQQVVEVCAEHEKENKLFGLLNDI-SSKDENKTIIFAETKRKVDKITKSIQNYGWAAVG 111
++ + +L+D+ ++ ++F TK + ++I + + G A
Sbjct: 5 TYEEEAVPAPVRGR----LEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQA 60
Query: 112 IHGDKSQQERDYVLK 126
+HGD SQ ER+ VL
Sbjct: 61 LHGDLSQGERERVLG 75
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding
protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Length = 206
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQIN 42
+RQ+L++SAT+P VQK L+ +IN
Sbjct: 176 KNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 40.7 bits (96), Expect = 3e-05
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 45
+Q+L SAT+P + ++ + + S
Sbjct: 197 ASKQMLAVSATYPEFLANALTKYMRDPTFVRLNS 230
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA
processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP:
c.37.1.19
Length = 220
Score = 40.3 bits (95), Expect = 4e-05
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 43
++QV+M+SAT +E++ + F+ ++I +
Sbjct: 189 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 39.9 bits (94), Expect = 5e-05
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 45
D Q+L++SAT P +++ + ++++ +++
Sbjct: 180 KDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 39.8 bits (94), Expect = 6e-05
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS--LTL 48
P QV++ SAT P +V ++ F+ + ++I + LTL
Sbjct: 185 PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTL 223
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic
resolution, AMP complex, ribosome biogenesis,
thermophilic, hydrolase; HET: AMP; 1.20A {Thermus
thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A*
3mwl_A* 3nbf_A* 3nej_A
Length = 207
Score = 39.4 bits (93), Expect = 8e-05
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 43
P RQ L++SAT P ++LAE ++ + + IN+
Sbjct: 174 PSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB:
2g9n_A*
Length = 237
Score = 39.1 bits (92), Expect = 1e-04
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 43
QV++ SAT P +V ++ + F+ I+I +
Sbjct: 203 TSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 38.2 bits (89), Expect = 3e-04
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 43
+ Q+L++SAT+ V K A+ + I +
Sbjct: 266 RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 9e-04
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 17/104 (16%)
Query: 28 QKLAEDFLDSYIQ----INIGSLTLSA--NHNIQQVVEVCAEHEKENKLFGLLNDISSKD 81
+ + F D+++ ++ + S I ++ +LF L K
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS---KQ 75
Query: 82 ENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125
E F E + NY + I ++ Q +
Sbjct: 76 EEMVQKFVEEVLR--------INYKFLMSPIKTEQRQPSMMTRM 111
Score = 33.3 bits (75), Expect = 0.015
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 18/116 (15%)
Query: 15 QVLM--WSATWPREVQKLAEDFLD-SYIQINIGSLTLSANHNIQQVVEVCAEHEKE--NK 69
+L W +V + S ++ T+S +I ++V E+E
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEYALHRS 448
Query: 70 LFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVL 125
+ N + D + D I + Y ++ +G H + L
Sbjct: 449 IVDHYNIPKTFDSD------------DLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 36.5 bits (85), Expect = 0.001
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINIGS 45
DR+ ++SAT ++VQKL L + ++ + S
Sbjct: 216 RDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 249
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.002
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 21/86 (24%)
Query: 25 REVQKLAEDFLDSYIQINIGSLT---LS-ANHNIQ--QVVEVCAEHEKE-NKLFGLLNDI 77
R +++ L ++ +G T + N+N++ Q V A + + + +LN I
Sbjct: 1816 RVAASFSQEALQYVVE-RVGKRTGWLVEIVNYNVENQQY--VAAGDLRALDTVTNVLNFI 1872
Query: 78 SSKDENKTIIFAETKRKVDKITKSIQ 103
+ K + ++ KS+
Sbjct: 1873 KLQ-----------KIDIIELQKSLS 1887
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 35.6 bits (82), Expect = 0.002
Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 7/119 (5%)
Query: 8 MTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEKE 67
+ Y+ +V + AEDF + A ++ + +
Sbjct: 277 VEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSK-- 334
Query: 68 NKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYVLK 126
NK+ L + ++K IIF V +I+K I S++ER+ +L+
Sbjct: 335 NKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILE 388
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural
genomics, structural genomic consortium, SGC, hydrolase;
HET: ADP; 2.15A {Homo sapiens}
Length = 236
Score = 34.5 bits (80), Expect = 0.005
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 43
RQ L++SAT + V+ LA L + + +
Sbjct: 201 KKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 32.1 bits (74), Expect = 0.040
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 65 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 124
EK L L+ + + II+ ++ KV+ +Q+ G +A H R V
Sbjct: 219 EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADV 278
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 31.1 bits (71), Expect = 0.071
Identities = 12/60 (20%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 66 KENKLFGLLNDISSKDENKT-IIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 124
E+ + ++ I+ + + ++ II+ +++ +++T S+QN G A H + +++ V
Sbjct: 250 TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTV 309
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 31.2 bits (70), Expect = 0.072
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 69 KLFGLLNDISSKDENKTIIFAETKRKVDKITKSI-QNYGWAAVGIHGDKSQQERD 122
++ L+ ++S K ++ ++ + + + G A H S ERD
Sbjct: 490 RVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERD 544
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant
helicase, T4-bacteriophage, recombination, hydrolase;
2.70A {Enterobacteria phage T4}
Length = 510
Score = 30.6 bits (68), Expect = 0.14
Identities = 10/76 (13%), Positives = 25/76 (32%)
Query: 51 NHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAV 110
Q+ +++ K NK L ++ + + + I I+N
Sbjct: 316 GKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVY 375
Query: 111 GIHGDKSQQERDYVLK 126
+ G+ + R+ +
Sbjct: 376 YVSGEVDTETRNIMKT 391
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 29.2 bits (66), Expect = 0.27
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 12 PDRQVLMWSATWPREVQKLA 31
RQ +++SAT R+V+ LA
Sbjct: 231 TRRQTMLFSATQTRKVEDLA 250
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.57
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 10/34 (29%)
Query: 92 KRKVDKITKSIQNYGWA-----AVGIHGDKSQQE 120
K+ + K+ S++ Y A A+ I K+ E
Sbjct: 19 KQALKKLQASLKLY--ADDSAPALAI---KATME 47
Score = 26.1 bits (56), Expect = 3.3
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 15/36 (41%)
Query: 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQ 40
+ Y D SA P LA + + ++
Sbjct: 27 ASLKLYADD------SA--P----ALA---IKATME 47
>3h1t_A Type I site-specific restriction-modification system, R
(restriction) subunit; hydrolase, restriction enzyme
HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Length = 590
Score = 26.7 bits (59), Expect = 3.1
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 84 KTIIFAETKRKVDKITKSIQNYGWAAVGIHGD 115
KTI+F + D++ +++ N H D
Sbjct: 441 KTIVFCVDQEHADEMRRALNNLNSDLSRKHPD 472
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A
{Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A
1esj_A 1esq_A*
Length = 272
Score = 25.7 bits (56), Expect = 5.6
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 21 ATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEK 66
A EV +A+ + + +NIG+L+ + + + EH
Sbjct: 46 AYAKEEVADMAK--IAGALVLNIGTLSKESVEAMIIAGKSANEHGV 89
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT,
protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A
{Moloney murine leukemia virus} PDB: 1d1u_A 1n4l_A*
1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A
2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A
1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Length = 255
Score = 25.3 bits (55), Expect = 7.0
Identities = 3/47 (6%), Positives = 9/47 (19%), Gaps = 6/47 (12%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITK 100
+ + L + + T + K +
Sbjct: 48 RLGIKPHIQRLLDQGILVPCQSPWN------TPLLPVKKPGTNDYRP 88
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.84A {Homo sapiens}
Length = 160
Score = 24.9 bits (54), Expect = 7.6
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 41 INIGSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFA----ETKRKVD 96
I+ + + VV + A H++ +LFG + SS + E+ + +
Sbjct: 71 IDPQTQVTRLTFPLPCVV-LYATHQENKRLFGFVLRTSSGRSESNLSSVCYIFESNNEGE 129
Query: 97 KITKSI 102
KI S+
Sbjct: 130 KICDSV 135
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor,
AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA
recombination; HET: T27; 1.80A {Human immunodeficiency
virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B*
3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B*
3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B*
1n5y_B* 1bqm_B* 1n6q_B* ...
Length = 428
Score = 25.1 bits (55), Expect = 8.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITK 100
I+ +VE+C E EKE K ++ I ++ T +FA K+ K K
Sbjct: 31 IKALVEICTEMEKEGK----ISKIGPENPYNTPVFAIKKKDSTKWRK 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.129 0.379
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,811,181
Number of extensions: 88725
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 62
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.8 bits)