RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9627
(129 letters)
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 56.5 bits (136), Expect = 4e-11
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 44 GSLTLSANH-NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSI 102
GS+T H NI++V E +G + + +IF +K+K D++ +
Sbjct: 2 GSVT--VPHPNIEEVALST---TGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKL 56
Query: 103 QNYGWAAVGIHGDKSQQER 121
G AV +
Sbjct: 57 VALGINAVAYYRGLDVSVI 75
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 54.8 bits (131), Expect = 1e-10
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH 113
++ V +V E + L +L + + II+A T + ++I +S++N
Sbjct: 1 VRNVEDVAVNDESISTLSSILEKLGTG----GIIYARTGEEAEEIYESLKN------KFR 50
Query: 114 GDKSQQERDYVLK 126
+ +
Sbjct: 51 IGIVTATKKGDYE 63
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 53.4 bits (127), Expect = 3e-10
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 8 MTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 44
M +RQ LM+SAT+P+E+QKLA DFL +YI + +G
Sbjct: 202 MPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 50.8 bits (120), Expect = 3e-09
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 44
P Q L++SAT+P V++ L +IN+
Sbjct: 172 PPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 49.9 bits (118), Expect = 6e-09
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINI 43
++QV+M+SAT +E++ + F+ ++I +
Sbjct: 175 PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 49.5 bits (117), Expect = 8e-09
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 44
P QV++ SAT P E+ ++ F+ I+I +
Sbjct: 188 PPATQVVLISATLPHEILEMTNKFMTDPIRILVK 221
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 48.9 bits (115), Expect = 1e-08
Identities = 7/32 (21%), Positives = 21/32 (65%)
Query: 12 PDRQVLMWSATWPREVQKLAEDFLDSYIQINI 43
D Q+L++SAT P +++ + ++++ +++
Sbjct: 177 KDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 48.7 bits (115), Expect = 1e-08
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINIG 44
+ QV++ SAT P +V ++ + F+ I+I +
Sbjct: 184 NSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 48.8 bits (115), Expect = 2e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQIN 42
+RQ+L++SAT+P VQK L+ +IN
Sbjct: 175 PKNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 47.7 bits (113), Expect = 3e-08
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINI 43
D+++L++SAT PRE+ LA+ ++ Y I
Sbjct: 174 NKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 46.7 bits (110), Expect = 7e-08
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 11 KPDRQVLMWSATWPREVQKLAEDFLDSYIQINI 43
P QV++ SAT P +V ++ F+ + ++I +
Sbjct: 180 PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 43.3 bits (101), Expect = 1e-06
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 49 SANHNIQQVVEVCAEHEKENKLFGLLNDISSKDEN-KTIIFAETKRKVDKITKSIQNYGW 107
A + Q E+ +H K +KL ++ + + +N K I+F + KI + G
Sbjct: 127 KAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 186
Query: 108 AAVGIHGDKSQQERDY 123
A G S++
Sbjct: 187 KAKRFVGQASKENDRG 202
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 42.2 bits (98), Expect = 3e-06
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 55 QQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHG 114
Q V V E K L L + I + +IF T+RKV+++T ++N + I+
Sbjct: 3 QFYVNVEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYS 59
Query: 115 DKSQQERDY 123
D QQERD
Sbjct: 60 DLPQQERDT 68
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 41.9 bits (97), Expect = 4e-06
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 53 NIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGI 112
NI+ ++ EK L L+ + + II+ ++ KV+ +Q+ G +A
Sbjct: 6 NIRYML-----MEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAY 60
Query: 113 HGDKSQQERDYV 124
H R V
Sbjct: 61 HAGLENNVRADV 72
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 40.8 bits (95), Expect = 5e-06
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 44 GSLTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQ 103
GS+T + NI++V E +G + + +IF +K+K D++ +
Sbjct: 1 GSVT-VPHPNIEEVAL---STTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLV 56
Query: 104 NYGWAAVGIHGDKSQQER 121
G AV +
Sbjct: 57 ALGINAVAYYRGLDVSVI 74
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 39.6 bits (91), Expect = 2e-05
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 51 NHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAV 110
N NI+Q E+E+ L LL + E ++F +TKR ++ +++ G+ A
Sbjct: 1 NANIEQSYVEVNENERFEALCRLLKN----KEFYGLVFCKTKRDTKELASMLRDIGFKAG 56
Query: 111 GIHGDKSQQERDYV 124
IHGD SQ +R+ V
Sbjct: 57 AIHGDLSQSQREKV 70
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 39.5 bits (91), Expect = 4e-05
Identities = 12/116 (10%), Positives = 28/116 (24%), Gaps = 22/116 (18%)
Query: 6 RAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHE 65
+ + +AT P + N I E
Sbjct: 124 STRVEMGEAAGIFMTATPPGSRDPFPQS-----------------NAPIMDEEREIPERS 166
Query: 66 KENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQER 121
+ + + + KT+ F + + + I ++ G + + E
Sbjct: 167 WNSGHEWVTDF-----KGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY 217
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 38.1 bits (87), Expect = 9e-05
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 46 LTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY 105
LTL +NI+Q +C +++K L N S + IIF +T+R +T +
Sbjct: 1 LTL---NNIRQYYVLCEH--RKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD 55
Query: 106 GWAAVGIHGDKSQQERDYV 124
G + G+ + ++R +
Sbjct: 56 GHQVSLLSGELTVEQRASI 74
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 36.4 bits (83), Expect = 4e-04
Identities = 6/44 (13%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 6 RAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYIQINIGSLTLS 49
++ + +++ +AT + + L + +IGS ++
Sbjct: 197 KSWVGEARGCLMVSTATAKKGKKAELFRQL---LNFDIGSSRIT 237
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 35.0 bits (79), Expect = 0.001
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 54 IQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIH 113
+QQ ++EK KLF LL+ + + N+ +IF ++ ++ + + + + A+ IH
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIH 58
Query: 114 GDKSQQERDY 123
Q+ER
Sbjct: 59 RGMPQEERLS 68
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 34.2 bits (77), Expect = 0.002
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 8 MTYKPDRQVLMWSATWPREVQKLAEDFL---DSYIQIN 42
P + +AT ++ L D IQI+
Sbjct: 169 RQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS 206
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 31.0 bits (69), Expect = 0.022
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 65 EKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERDYV 124
+NK+ L + ++K IIF V +I+K + I S++ER+ +
Sbjct: 76 NSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKV-----FLIPAITHRTSREEREEI 130
Query: 125 LK 126
L+
Sbjct: 131 LE 132
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 28.9 bits (63), Expect = 0.13
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 46 LTLSANHNIQQVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNY 105
LTL I Q E +K + L L + + N+ IIF + +V+ + K I +
Sbjct: 2 LTL---KGITQYYAFVEERQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDL 55
Query: 106 GWAAVGIH 113
G++ H
Sbjct: 56 GYSCYYSH 63
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 28.4 bits (62), Expect = 0.23
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 5 SRAMTYKPDRQVLMWSATWPREVQKLAEDFLDSYI 39
++ +V+ SAT P V ++AE +LD+
Sbjct: 164 TKMRRMNKALRVIGLSATAP-NVTEIAE-WLDADY 196
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 27.3 bits (60), Expect = 0.51
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 79 SKDENKTIIFAETKRKVDKITKSIQNYGWAAVGIHGDKSQQERD 122
D+ T F + R + + S++ G + V ++ ++E
Sbjct: 33 LADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP 76
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 26.0 bits (56), Expect = 1.2
Identities = 6/51 (11%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 56 QVVEVCAEHEKENKLFGLLNDISSKDENKTIIFAETKRKVDKITKSIQNYG 106
++ + + K L+ + +++ ++F T+R +K +
Sbjct: 15 ELFDGAFSTSRRVKFEELVEECVAENG-GVLVFESTRRGAEKTAVKLSAIT 64
>d1t6ja_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Fungi
(Rhodosporidium toruloides) [TaxId: 5286]}
Length = 678
Score = 25.7 bits (56), Expect = 1.9
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 26 EVQKLAEDFLDSYIQINIGSLTLSANHNIQQVVEVCAEHEK 66
V+K+ DS ++++ SL + VV +
Sbjct: 9 IVEKMLAAPTDSTLELDGYSLN------LGDVVSAARKGRP 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.129 0.379
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 442,493
Number of extensions: 16625
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 29
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.0 bits)