BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9628
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|G Chain G, Bovine Mitochondrial F1-Atpase
pdb|1NBM|G Chain G, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|G Chain G, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|G Chain G, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|G Chain G, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|G Chain G, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|G Chain G, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|G Chain G, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1W0J|G Chain G, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|G Chain G, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|G Chain G, Azide Inhibited Bovine F1-Atpase
pdb|2JIZ|G Chain G, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|N Chain N, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|G Chain G, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|N Chain N, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|G Chain G, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|N Chain N, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|G Chain G, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|G Chain G, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|P Chain P, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2XND|G Chain G, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 272
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 15 QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYN 72
+II +GDK R+IL R + + ++ EVGRRPPTF DAS +A E S Y F G II+N
Sbjct: 104 KIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFN 163
Query: 73 KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
+F+SV+SY T + PIFSL ++++A + +YD +
Sbjct: 164 RFRSVISYKTEEKPIFSLDTISSAESMSIYDDI 196
>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|4ASU|G Chain G, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 273
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 15 QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYN 72
+II +GDK R+IL R + + ++ EVGRRPPTF DAS +A E S Y F G II+N
Sbjct: 104 KIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFN 163
Query: 73 KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
+F+SV+SY T + PIFSL ++++A + +YD +
Sbjct: 164 RFRSVISYKTEEKPIFSLDTISSAESMSIYDDI 196
>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 298
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 15 QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYN 72
+II +GDK R+IL R + + ++ EVGRRPPTF DAS +A E S Y F G II+N
Sbjct: 129 KIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFN 188
Query: 73 KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
+F+SV+SY T + PIFSL ++++A + +YD +
Sbjct: 189 RFRSVISYKTEEKPIFSLDTISSAESMSIYDDI 221
>pdb|2F43|G Chain G, Rat Liver F1-atpase
Length = 273
Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
I+ IG+K ++IL R + + +++ +VGR+PPTF DAS +A E S Y F G II+N+
Sbjct: 105 IVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQ 164
Query: 74 FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
FKSV+SY T + PIFS ++V AA + +YD +
Sbjct: 165 FKSVISYKTEEKPIFSFSTVVAAENMSIYDDI 196
>pdb|1MAB|G Chain G, Rat Liver F1-Atpase
Length = 270
Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
I+ IG+K ++IL R + + +++ +VGR+PPTF DAS +A E S Y F G II+N+
Sbjct: 102 IVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQ 161
Query: 74 FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
FKSV+SY T + PIFS ++V AA + +YD +
Sbjct: 162 FKSVISYKTEEKPIFSFSTVVAAENMSIYDDI 193
>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
Length = 278
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE----TSKYNFTSGKIIY 71
I+TIGDK + L R + NNI L+ N +G+ PTF +++ +A + + I Y
Sbjct: 107 IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY 166
Query: 72 NKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
N S +S+ S+ PIF+ ++ +P G ++
Sbjct: 167 NDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFE 198
>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 311
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE----TSKYNFTSGKIIY 71
I+TIGDK + L R + NNI L+ N +G+ PTF +++ +A + + I Y
Sbjct: 140 IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY 199
Query: 72 NKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
N S +S+ S+ PIF+ ++ +P G ++
Sbjct: 200 NDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFE 231
>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|P Chain P, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|Y Chain Y, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|G Chain G, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|P Chain P, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|Y Chain Y, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|G Chain G, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OEE|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEH|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OFN|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3ZRY|G Chain G, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|4B2Q|G Chain G, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|GG Chain g, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|3ZIA|G Chain G, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|Q Chain Q, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 278
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE----TSKYNFTSGKIIY 71
I+TIGDK + L R + NNI L+ N +G+ PTF +++ +A + + I Y
Sbjct: 107 IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY 166
Query: 72 NKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
N S +S+ S+ PIF+ ++ +P G ++
Sbjct: 167 NDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFE 198
>pdb|2C5Q|A Chain A, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|B Chain B, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|C Chain C, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|D Chain D, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|E Chain E, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|F Chain F, Crystal Structure Of Yeast Yer010cp
Length = 240
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 60 SKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPK 98
++Y ++G +++ + + V + T + P+F+ + APK
Sbjct: 107 AQYLKSNGTVVFGRIRDVDEHRTLNHPVFAYGVGSCAPK 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,002,610
Number of Sequences: 62578
Number of extensions: 98463
Number of successful extensions: 226
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 9
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)