BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9628
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O01666|ATPG_DROME ATP synthase subunit gamma, mitochondrial OS=Drosophila
melanogaster GN=ATPsyn-gamma PE=2 SV=2
Length = 297
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 73/93 (78%), Gaps = 2/93 (2%)
Query: 15 QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET--SKYNFTSGKIIYN 72
++ +GDKSRAIL RLYG NI++ ANEVGR PPTFLDASK+A E + Y++T GKI+YN
Sbjct: 128 KVFCVGDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYN 187
Query: 73 KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
+FKSVVSY S LPIFS ++V + KL VYDSL
Sbjct: 188 RFKSVVSYQCSTLPIFSGSTVEKSEKLAVYDSL 220
>sp|P05631|ATPG_BOVIN ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1
PE=1 SV=3
Length = 298
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 15 QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYN 72
+II +GDK R+IL R + + ++ EVGRRPPTF DAS +A E S Y F G II+N
Sbjct: 129 KIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFN 188
Query: 73 KFKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
+F+SV+SY T + PIFSL ++++A + +YD +
Sbjct: 189 RFRSVISYKTEEKPIFSLDTISSAESMSIYDDI 221
>sp|P36542|ATPG_HUMAN ATP synthase subunit gamma, mitochondrial OS=Homo sapiens GN=ATP5C1
PE=1 SV=1
Length = 298
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query: 16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
++ IGDK R IL R + + ++A EVGR+PPTF DAS +A E S Y F G II+NK
Sbjct: 130 LVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNK 189
Query: 74 FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
F+SV+SY T + PIFSL +V +A + +YD +
Sbjct: 190 FRSVISYKTEEKPIFSLNTVASADSMSIYDDI 221
>sp|Q5RBS9|ATPG_PONAB ATP synthase subunit gamma, mitochondrial OS=Pongo abelii GN=ATP5C1
PE=2 SV=1
Length = 297
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query: 16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
++ +GDK R IL R + + ++A EVGR+PPTF DAS +A E S Y F G II+NK
Sbjct: 130 LVGVGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNK 189
Query: 74 FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
F+SV+SY T + PIFSL +V +A + +YD +
Sbjct: 190 FRSVISYKTEEKPIFSLNTVASADSMSIYDDI 221
>sp|Q4R5B0|ATPG_MACFA ATP synthase subunit gamma, mitochondrial OS=Macaca fascicularis
GN=ATP5C1 PE=2 SV=1
Length = 298
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query: 16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
++ IGDK R IL R + + ++A EVGR+PPTF DAS +A E S Y F G +I+N+
Sbjct: 130 LVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSVIFNR 189
Query: 74 FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
F+SV+SY T + PIFSL ++ +A + +YD +
Sbjct: 190 FRSVISYKTEEKPIFSLNTIASAESMSIYDDI 221
>sp|P35435|ATPG_RAT ATP synthase subunit gamma, mitochondrial OS=Rattus norvegicus
GN=Atp5c1 PE=1 SV=2
Length = 273
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
I+ IG+K ++IL R + + +++ +VGR+PPTF DAS +A E S Y F G II+N+
Sbjct: 105 IVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQ 164
Query: 74 FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
FKSV+SY T + PIFS ++V AA + +YD +
Sbjct: 165 FKSVISYKTEEKPIFSFSTVVAAENMSIYDDI 196
>sp|Q91VR2|ATPG_MOUSE ATP synthase subunit gamma, mitochondrial OS=Mus musculus GN=Atp5c1
PE=1 SV=1
Length = 298
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Query: 16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNK 73
I+ +G+K + IL R + + +++ +VGR+PPTF DAS +A E S Y F G II+N+
Sbjct: 130 IVGVGEKIKGILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQ 189
Query: 74 FKSVVSYTTSDLPIFSLASVTAAPKLGVYDSL 105
FKSV+SY T + PIFSL ++ A + +YD +
Sbjct: 190 FKSVISYKTEEKPIFSLNTIATAETMSIYDDI 221
>sp|P38077|ATPG_YEAST ATP synthase subunit gamma, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ATP3 PE=1
SV=1
Length = 311
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE----TSKYNFTSGKIIY 71
I+TIGDK + L R + NNI L+ N +G+ PTF +++ +A + + I Y
Sbjct: 140 IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY 199
Query: 72 NKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
N S +S+ S+ PIF+ ++ +P G ++
Sbjct: 200 NDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFE 231
>sp|Q96250|ATPG3_ARATH ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana
GN=ATPC PE=1 SV=1
Length = 325
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSK-YNFTSG 67
P Q + +G+K++AI+ R N+I+L+ E+ + P + S +A + K F +
Sbjct: 137 GPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDAL 196
Query: 68 KIIYNKFKSVVSY 80
+I+YNKF SVV++
Sbjct: 197 RIVYNKFHSVVAF 209
>sp|P49377|ATPG_KLULA ATP synthase subunit gamma, mitochondrial OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=ATP3 PE=1 SV=1
Length = 289
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQ---ETSKYNFTSGKIIYN 72
++ IGDK + L R +N+ A N VG+ PTF + S +A E N+ I +N
Sbjct: 119 VVAIGDKVKGQLLRTNSDNLKFAFNGVGKEAPTFEETSLIANKILEGGASNYKKVSIFWN 178
Query: 73 KFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
S +S+ S+ P+F+ A++ +P ++
Sbjct: 179 DPISSLSFEPSNKPVFNAAAIEQSPSFSKFE 209
>sp|B6IPC7|ATPG_RHOCS ATP synthase gamma chain OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=atpG PE=3 SV=1
Length = 295
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 13 TNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKY----NFTSGK 68
T +++ +G K R +L+R Y I+ + +VGRR +F DA ++ + + F
Sbjct: 115 TVKLLCVGRKGRDLLRREYAGMIVHSFEDVGRRRLSFADADRITAKVLELFEAGEFDVAT 174
Query: 69 IIYNKFKSVVSYTTSDLPIFSLASVTA 95
+IYNKF+S ++ + + A A
Sbjct: 175 VIYNKFRSAITQVVTAQQVIPFAPAVA 201
>sp|Q2VZN1|ATPG_MAGSA ATP synthase gamma chain OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=atpG PE=3 SV=1
Length = 294
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 13 TNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKY----NFTSGK 68
T +I+ +G K+R L+R YG +I +GR+ F +A +VA + S F
Sbjct: 115 TIKIMPVGRKAREQLRRDYGQYMIEGFENLGRKGIVFAEADQVASQISAMFDAEEFDVCT 174
Query: 69 IIYNKFKSVVS 79
++YNKFKS ++
Sbjct: 175 VVYNKFKSAIA 185
>sp|P26360|ATPG3_IPOBA ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas
GN=ATPC PE=1 SV=2
Length = 326
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSK-YNFTSG 67
P N+ + +G+K++A L R +I L E+ + P + S VA + K F +
Sbjct: 140 GPEKENKYVILGEKAKAQLVRDSKKDIELIITELQKNPLNYTQVSVVADDILKNVEFDAL 199
Query: 68 KIIYNKFKSVVSYTTSDLPIFSLASV----TAAPKLGVYDS 104
+I++NKF+SVVS+ + + S V + KLG DS
Sbjct: 200 RIVFNKFQSVVSFVPTMSTVLSPEVVERESESGGKLGDLDS 240
>sp|A5FZ53|ATPG_ACICJ ATP synthase gamma chain OS=Acidiphilium cryptum (strain JF-5)
GN=atpG PE=3 SV=1
Length = 296
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 15 QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK-----I 69
++ T+G K R +R II AN VG++ F DA +A + F GK +
Sbjct: 117 RLFTVGRKGRDFFRRDMREKIIGEANFVGKKTIEFADAEAIANQIIAA-FNDGKFDVCTL 175
Query: 70 IYNKFKSVVSYTTSDLPIFSLASVTAA 96
++N+F SV+S S+ P+ ++ AA
Sbjct: 176 MFNRFVSVMSQVPSETPLIPASAGQAA 202
>sp|O74754|ATPG_SCHPO ATP synthase subunit gamma, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=atp3 PE=3 SV=1
Length = 301
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKY--NFTSGKIIYNK 73
+ +G+K R L R + L +G P+F +A +++ ++ ++ ++YNK
Sbjct: 134 LCILGEKVRTQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNK 193
Query: 74 FKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
F S VS+ T +++ ++ +P L Y+
Sbjct: 194 FASAVSFETVMKNLYTTKAINESPNLSAYE 223
>sp|Q4FP37|ATPG_PELUB ATP synthase gamma chain OS=Pelagibacter ubique (strain HTCC1062)
GN=atpG PE=3 SV=1
Length = 291
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 13 TNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVA----QETSKYNFTSGK 68
T +IIT+G K L+R+Y + I+ + + +LDA KV + K F
Sbjct: 115 TLKIITVGSKGYDQLKRVYKDAIVERISFKDSKTINYLDAEKVGKMIIENFEKEEFDVCT 174
Query: 69 IIYNKFKSVVSYTTSDLPIFSLASVTA 95
I YNKFK+V++ + I L + A
Sbjct: 175 IFYNKFKNVITQIPQEQQIIPLKTSEA 201
>sp|A5V3X4|ATPG_SPHWW ATP synthase gamma chain OS=Sphingomonas wittichii (strain RW1 /
DSM 6014 / JCM 10273) GN=atpG PE=3 SV=1
Length = 294
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 19 IGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET----SKYNFTSGKIIYNKF 74
IG K RA+LQRL+ I+ ++ + F DA VA++ S F + + KF
Sbjct: 121 IGKKGRAVLQRLFPGKIVHQVDQSHIKNVAFSDAHMVAEDLIGRYSAGEFDVAHLFFAKF 180
Query: 75 KSVVSYTTSDLPIF 88
+S + ++L I
Sbjct: 181 QSALVQEPTELQII 194
>sp|Q0BQE7|ATPG_GRABC ATP synthase gamma chain OS=Granulibacter bethesdensis (strain ATCC
BAA-1260 / CGDNIH1) GN=atpG PE=3 SV=1
Length = 298
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 13 TNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-TSKYN---FTSGK 68
T +I+T+G K+R L+R ++ + G++ F DA ++Q+ T++ + F
Sbjct: 115 TVKILTVGRKARDYLRRDLETRLLPETSLAGKKVLAFADALALSQQITARLDAGEFDVCT 174
Query: 69 IIYNKFKSVVSYTTSDLPIFSLASVTAAP 97
++YN F SV+S T + + AAP
Sbjct: 175 LVYNHFNSVISQTPGETQLIPAQVPQAAP 203
>sp|Q28TJ7|ATPG_JANSC ATP synthase gamma chain OS=Jannaschia sp. (strain CCS1) GN=atpG
PE=3 SV=1
Length = 296
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 13 TNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET----SKYNFTSGK 68
T +I+T+G K R L+R Y +++I + + + DA+ +A + + F
Sbjct: 115 TIKILTVGKKGREQLRRDYADHLIGHVDLSDVKRLGYADAASIATDVLNRFEEDEFDVAT 174
Query: 69 IIYNKFKSVVS 79
I +N+F+SV+S
Sbjct: 175 IFFNRFESVIS 185
>sp|B4RD46|ATPG_PHEZH ATP synthase gamma chain OS=Phenylobacterium zucineum (strain HLK1)
GN=atpG PE=3 SV=1
Length = 290
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 14/73 (19%)
Query: 15 QIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETS---KYNFTSGKI-- 69
++ITIG K+R L+RL G ++ A E G P VA+E S + F +G++
Sbjct: 116 RVITIGRKARDQLRRLAGERLV-ATYEAGSNPSL-----AVAEEVSARIQEMFEAGEVDV 169
Query: 70 ---IYNKFKSVVS 79
+++ FKSVV+
Sbjct: 170 VHLVFSSFKSVVT 182
>sp|P36980|FHR2_HUMAN Complement factor H-related protein 2 OS=Homo sapiens GN=CFHR2 PE=1
SV=1
Length = 270
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 27 LQRLYGNNIILAANEVGRRPPTFLDASKVAQE-TSKYN----FTSGKIIYNKFKSVVSYT 81
L +L GNN I N PP LD ++QE KYN +T+ + +Y++ +V +
Sbjct: 181 LYQLEGNNQITCRNGQWSEPPKCLDPCVISQEIMEKYNIKLKWTNQQKLYSRTGDIVEFV 240
Query: 82 T 82
Sbjct: 241 C 241
>sp|A8EU90|QUEA_ARCB4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Arcobacter butzleri (strain RM4018) GN=queA PE=3 SV=1
Length = 340
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 37 LAANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIF-SLASVTA 95
L N++ P T D++K+ +N ++ II++ FK ++ + +DL IF + V
Sbjct: 14 LPKNQIATYPVTPADSAKLL----IFNRSTNTIIHSTFKDILEFLPNDLSIFLNDTKVIK 69
Query: 96 APKLGVYDS 104
A GV DS
Sbjct: 70 ARIFGVKDS 78
>sp|Q11DD6|ATPG_MESSB ATP synthase gamma chain OS=Mesorhizobium sp. (strain BNC1) GN=atpG
PE=3 SV=1
Length = 290
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 15 QIITIGDKSRAILQRLYGNNII--LAANEVGRRPPTFLDASKVAQETSKYNFTSGK---- 68
+IIT+G K +L+R +G +I + EV + F +A +A++ F +G+
Sbjct: 116 KIITVGKKGYDLLRRDFGKLVIDRIELREV--KQIGFANADAIAKKVIGL-FEAGEFDVC 172
Query: 69 -IIYNKFKSVVSYTTSDLPIFSLA 91
+IY++FKSV+S ++ I A
Sbjct: 173 TLIYSRFKSVISQIPTEQQIIPAA 196
>sp|A1B8N9|ATPG_PARDP ATP synthase gamma chain OS=Paracoccus denitrificans (strain Pd
1222) GN=atpG PE=3 SV=1
Length = 290
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 12/72 (16%)
Query: 16 IITIGDKSRAILQRLYG----NNIILAANEVGRRPPTFLDASKVAQET-SKYN---FTSG 67
I+T+G K R L+R YG N++ L+ EV R + +A +A E +++ F
Sbjct: 118 ILTVGKKGREQLKREYGDLFVNHVDLS--EVKR--IGYDNARAIADEILDRFDNGEFDVA 173
Query: 68 KIIYNKFKSVVS 79
+ YN+F+SV+S
Sbjct: 174 TLFYNRFESVIS 185
>sp|P05436|ATPG_RHOBL ATP synthase gamma chain OS=Rhodopseudomonas blastica GN=atpG PE=3
SV=1
Length = 286
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK 68
A T +I+T+G K R L+R + + + + R + +A +A+E F +G+
Sbjct: 109 AQGKTVKILTVGKKGREQLKRDWASAFVGHVDLSDVRRLGYSNAQGIAREVLAA-FEAGE 167
Query: 69 -----IIYNKFKSVVSYTTSDLPIFSLASVTAAPKLGVYD 103
I YN+F+SV+S + + A AA +YD
Sbjct: 168 ADVVTIFYNRFQSVISQVPTAQQVIP-AKFEAAETNALYD 206
>sp|Q8UC75|ATPG_AGRT5 ATP synthase gamma chain OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=atpG PE=3 SV=1
Length = 292
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 13 TNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQET-SKYN---FTSGK 68
T +IIT+G K L+R + + II + F +A ++A++ S +N F
Sbjct: 114 TVKIITVGKKGYDSLRREFASLIIERIELRDVKKVGFENADQIAKKVISLFNAGEFDVCT 173
Query: 69 IIYNKFKSVVSYTTSDLPIFSLAS 92
+IY++FKSV+S + L + A+
Sbjct: 174 LIYSEFKSVISQIPTGLQLIPAAT 197
>sp|Q2G5N6|ATPG_NOVAD ATP synthase gamma chain OS=Novosphingobium aromaticivorans (strain
DSM 12444) GN=atpG PE=3 SV=1
Length = 290
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 19 IGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETSKYNFTSGK-----IIYNK 73
+G K RA ++R Y N I + R P F +A+ +AQE F +GK ++ +
Sbjct: 121 VGKKGRAPIRRDYPNGIAAGYDTSLVRTPGFDEAAAIAQELLAL-FEAGKFDVAHLVAPE 179
Query: 74 FKSVVSY---TTSDLPI 87
FK+ ++ TT +P+
Sbjct: 180 FKNALTQLPVTTQIIPV 196
>sp|A9H9A6|ATPG_GLUDA ATP synthase gamma chain OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=atpG PE=3 SV=1
Length = 293
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 8 NAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQETS----KYN 63
A T +++ G K L R + + I+ + G + F A+++ + + K
Sbjct: 110 QAEGKTIRLLPTGRKGYEFLMREFSDLIVDHVHGSGGKEVPFSAAAELGERLTAMLEKGE 169
Query: 64 FTSGKIIYNKFKSVVSYTTSDLPIFSLA 91
F ++YN+F +V+S T +++ + LA
Sbjct: 170 FDVCTVVYNRFNNVMSQTPTEMQLIPLA 197
>sp|Q04995|ENV_FIVU8 Envelope glycoprotein gp150 OS=Feline immunodeficiency virus
(strain UK8) GN=env PE=3 SV=1
Length = 855
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 64 FTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAP 97
T GKI+YNK+ +SY T L I L S T P
Sbjct: 303 LTGGKILYNKYTKQLSYCTDPLQI-PLISYTFGP 335
>sp|Q9LD43|ACCA_ARATH Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha,
chloroplastic OS=Arabidopsis thaliana GN=CAC3 PE=1 SV=1
Length = 769
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 13 TNQIITIGDKSRAILQRLYGNNIILAANEVGRRP--PTFLD 51
T QIIT+ +K R L+ LY + + + R P PTFLD
Sbjct: 126 TEQIITLENKYRQALKDLYTHLTPIQRVNIARHPNRPTFLD 166
>sp|Q39T85|DER_GEOMG GTPase Der OS=Geobacter metallireducens (strain GS-15 / ATCC 53774
/ DSM 7210) GN=der PE=3 SV=1
Length = 439
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 39 ANEVGRRPPTFLDASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPI 87
A +VG +PPTF+ + +F+ + + NKF+ +T S L I
Sbjct: 385 ATQVGTKPPTFV---LFTNQPEGVHFSYERYLMNKFREAFDFTGSPLKI 430
>sp|Q9R6P8|IF1_MYCGA Translation initiation factor IF-1 OS=Mycoplasma gallisepticum
(strain R(low / passage 15 / clone 2)) GN=infA PE=3
SV=1
Length = 70
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 20 GDKSRAILQRLYGNNIILAANEVGR---RPPTFLDASKVAQETSKYNFTSGKIIY 71
GDK + +L+ NN+++ A+ G+ L V E S Y+ T G+IIY
Sbjct: 18 GDKFKVLLE----NNLLIEAHVSGKIRMHKIRILPGDSVEVEFSPYDLTKGRIIY 68
>sp|Q8EWY9|ATPG_MYCPE ATP synthase gamma chain OS=Mycoplasma penetrans (strain HF-2)
GN=atpG PE=3 SV=1
Length = 286
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 55 VAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLASVTAAPKL 99
+A+ + YN S K+IY+KF + +S+T S + L P+L
Sbjct: 152 LAKYKNDYNIKSIKVIYSKFVNSLSFTPSVFSLLPLDKAIEKPRL 196
>sp|Q0C0Z9|ATPG_HYPNA ATP synthase gamma chain OS=Hyphomonas neptunium (strain ATCC
15444) GN=atpG PE=3 SV=1
Length = 292
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 13 TNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDAS-KVAQETSKYNFTSGK--- 68
T +++TIG K R +L R + N + F DAS V Q +K F +G+
Sbjct: 113 TVKVLTIGKKGREVLAREHSALFTGHVNLSDVKSNNFTDASLSVGQMLTK-GFENGEFDV 171
Query: 69 --IIYNKFKSVVS 79
+IY++FK+V+S
Sbjct: 172 ATLIYSQFKNVLS 184
>sp|Q8NXE9|ADDA_STAAW ATP-dependent helicase/nuclease subunit A OS=Staphylococcus aureus
(strain MW2) GN=addA PE=3 SV=1
Length = 1217
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 11 SMTNQIITIGDKSRAILQRLYGNNI---ILAANEVGRRPPTFLDASKVAQETSKYNFTSG 67
S+ + I D+ R + + L G I L +E G R P K A E
Sbjct: 244 SVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDA 303
Query: 68 KIIYNKFKSVVSYTTSD 84
K+ Y K+KS++ SD
Sbjct: 304 KLQYKKYKSLIDKVKSD 320
>sp|Q6GAV9|ADDA_STAAS ATP-dependent helicase/nuclease subunit A OS=Staphylococcus aureus
(strain MSSA476) GN=addA PE=3 SV=1
Length = 1217
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 11 SMTNQIITIGDKSRAILQRLYGNNI---ILAANEVGRRPPTFLDASKVAQETSKYNFTSG 67
S+ + I D+ R + + L G I L +E G R P K A E
Sbjct: 244 SVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDA 303
Query: 68 KIIYNKFKSVVSYTTSD 84
K+ Y K+KS++ SD
Sbjct: 304 KLQYKKYKSLIDKVKSD 320
>sp|A6QFH8|ADDA_STAAE ATP-dependent helicase/nuclease subunit A OS=Staphylococcus aureus
(strain Newman) GN=addA PE=3 SV=1
Length = 1217
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 11 SMTNQIITIGDKSRAILQRLYGNNI---ILAANEVGRRPPTFLDASKVAQETSKYNFTSG 67
S+ + I D+ R + + L G I L +E G R P K A E
Sbjct: 244 SVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDA 303
Query: 68 KIIYNKFKSVVSYTTSD 84
K+ Y K+KS++ SD
Sbjct: 304 KLQYKKYKSLIDKVKSD 320
>sp|Q5HHB7|ADDA_STAAC ATP-dependent helicase/nuclease subunit A OS=Staphylococcus aureus
(strain COL) GN=addA PE=3 SV=1
Length = 1217
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 11 SMTNQIITIGDKSRAILQRLYGNNI---ILAANEVGRRPPTFLDASKVAQETSKYNFTSG 67
S+ + I D+ R + + L G I L +E G R P K A E
Sbjct: 244 SVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDA 303
Query: 68 KIIYNKFKSVVSYTTSD 84
K+ Y K+KS++ SD
Sbjct: 304 KLQYKKYKSLIDKVKSD 320
>sp|Q2FZT5|ADDA_STAA8 ATP-dependent helicase/nuclease subunit A OS=Staphylococcus aureus
(strain NCTC 8325) GN=addA PE=3 SV=1
Length = 1217
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 11 SMTNQIITIGDKSRAILQRLYGNNI---ILAANEVGRRPPTFLDASKVAQETSKYNFTSG 67
S+ + I D+ R + + L G I L +E G R P K A E
Sbjct: 244 SVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDA 303
Query: 68 KIIYNKFKSVVSYTTSD 84
K+ Y K+KS++ SD
Sbjct: 304 KLQYKKYKSLIDKVKSD 320
>sp|A8Z073|ADDA_STAAT ATP-dependent helicase/nuclease subunit A OS=Staphylococcus aureus
(strain USA300 / TCH1516) GN=addA PE=3 SV=1
Length = 1217
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 11 SMTNQIITIGDKSRAILQRLYGNNI---ILAANEVGRRPPTFLDASKVAQETSKYNFTSG 67
S+ + I D+ R + + L G I L +E G R P K A E
Sbjct: 244 SVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDA 303
Query: 68 KIIYNKFKSVVSYTTSD 84
K+ Y K+KS++ SD
Sbjct: 304 KLQYKKYKSLIDKVKSD 320
>sp|Q2FIA8|ADDA_STAA3 ATP-dependent helicase/nuclease subunit A OS=Staphylococcus aureus
(strain USA300) GN=addA PE=3 SV=1
Length = 1217
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 11 SMTNQIITIGDKSRAILQRLYGNNI---ILAANEVGRRPPTFLDASKVAQETSKYNFTSG 67
S+ + I D+ R + + L G I L +E G R P K A E
Sbjct: 244 SVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDA 303
Query: 68 KIIYNKFKSVVSYTTSD 84
K+ Y K+KS++ SD
Sbjct: 304 KLQYKKYKSLIDKVKSD 320
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,403,516
Number of Sequences: 539616
Number of extensions: 1228574
Number of successful extensions: 3562
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 3529
Number of HSP's gapped (non-prelim): 46
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)