Query psy9628
Match_columns 112
No_of_seqs 155 out of 1029
Neff 7.4
Searched_HMMs 46136
Date Sat Aug 17 00:35:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0224 AtpG F0F1-type ATP syn 99.8 5.5E-19 1.2E-23 133.5 8.2 83 8-93 104-191 (287)
2 KOG1531|consensus 99.8 8.5E-19 1.8E-23 130.9 4.9 101 11-111 131-233 (304)
3 PRK13427 F0F1 ATP synthase sub 99.7 4.7E-16 1E-20 117.9 9.1 80 9-91 109-193 (289)
4 PRK14111 F0F1 ATP synthase sub 99.6 1.1E-15 2.4E-20 115.9 9.4 79 10-91 112-195 (290)
5 PRK14110 F0F1 ATP synthase sub 99.6 1.6E-15 3.5E-20 115.1 9.6 80 10-91 111-195 (291)
6 PRK13425 F0F1 ATP synthase sub 99.6 1.8E-15 3.8E-20 114.9 9.7 79 10-91 113-196 (291)
7 PRK13424 F0F1 ATP synthase sub 99.6 1.9E-15 4.1E-20 114.7 9.2 80 10-92 110-194 (291)
8 PF00231 ATP-synt: ATP synthas 99.6 3.2E-15 7E-20 113.1 10.2 80 8-90 107-191 (290)
9 PRK13422 F0F1 ATP synthase sub 99.6 2.2E-15 4.8E-20 114.7 9.0 81 9-91 108-195 (298)
10 PRK13423 F0F1 ATP synthase sub 99.6 2.7E-15 5.8E-20 113.7 8.7 81 9-92 108-193 (288)
11 PRK13426 F0F1 ATP synthase sub 99.6 4.6E-15 1E-19 112.6 9.0 77 12-91 112-193 (291)
12 TIGR01146 ATPsyn_F1gamma ATP s 99.6 1.2E-14 2.6E-19 110.0 9.8 80 10-92 109-193 (287)
13 PRK05621 F0F1 ATP synthase sub 99.6 1.3E-14 2.8E-19 109.6 9.1 80 10-92 108-192 (284)
14 TIGR03323 alt_F1F0_F1_gam alte 99.4 4.5E-13 9.8E-18 101.5 8.8 74 12-91 104-186 (285)
15 PF03960 ArsC: ArsC family; I 34.0 1E+02 0.0022 19.5 4.2 36 20-58 9-44 (110)
16 COG1393 ArsC Arsenate reductas 25.9 1.4E+02 0.0031 19.6 3.9 35 21-58 15-49 (117)
17 cd03035 ArsC_Yffb Arsenate Red 24.9 1.8E+02 0.0038 18.5 4.1 35 21-58 13-47 (105)
18 cd03033 ArsC_15kD Arsenate Red 23.7 1.6E+02 0.0036 19.0 3.8 35 21-58 14-48 (113)
19 TIGR00014 arsC arsenate reduct 23.2 1.9E+02 0.0042 18.5 4.1 36 20-58 12-47 (114)
20 cd03034 ArsC_ArsC Arsenate Red 22.9 2E+02 0.0043 18.4 4.1 36 20-58 12-47 (112)
21 PF11834 DUF3354: Domain of un 22.1 1.3E+02 0.0027 18.1 2.8 25 46-70 25-60 (69)
22 PRK10853 putative reductase; P 21.7 1.8E+02 0.0039 19.0 3.8 35 21-58 14-48 (118)
23 PRK13344 spxA transcriptional 21.3 2.3E+02 0.005 18.8 4.2 35 21-58 14-48 (132)
24 TIGR01616 nitro_assoc nitrogen 20.8 2.1E+02 0.0045 19.0 3.9 35 21-58 15-49 (126)
No 1
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=99.78 E-value=5.5e-19 Score=133.55 Aligned_cols=83 Identities=22% Similarity=0.356 Sum_probs=74.8
Q ss_pred CCCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEe
Q psy9628 8 NAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTT 82 (112)
Q Consensus 8 ~~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p 82 (112)
.++|.++.+++||+||.+||++++. ++...+.++. +.|+|+.+..|++. .+| ++|+|+|+||+|+|+++|+|
T Consensus 104 ~~~~~~~~li~iG~Kg~~~f~~~~~-~i~~~~~~l~-~~p~~~~~~~i~~~~~~~~~~g-~~d~v~l~yn~f~n~~sq~~ 180 (287)
T COG0224 104 KNKGKEVKLILIGKKGIDFFKKRGY-NILESFTGLG-DNPSFEEAIQIADKILDAFLEG-EIDELYLVYNKFKNALSQEP 180 (287)
T ss_pred hccCCceEEEEEchHHHHHHHhcCc-chhhHhhccc-cCCCHHHHHHHHHHHHHHHhCC-CCceEEEEecccccceeeee
Confidence 4567789999999999999999664 7888899996 67999999999998 678 99999999999999999999
Q ss_pred EEeeeecCccc
Q psy9628 83 SDLPIFSLASV 93 (112)
Q Consensus 83 ~~~~lLPi~~~ 93 (112)
++++|||+.+.
T Consensus 181 ~~~~llP~~~~ 191 (287)
T COG0224 181 TVQQLLPLDKI 191 (287)
T ss_pred eeEEEecCCcc
Confidence 99999999743
No 2
>KOG1531|consensus
Probab=99.75 E-value=8.5e-19 Score=130.89 Aligned_cols=101 Identities=50% Similarity=0.786 Sum_probs=90.7
Q ss_pred CCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH--hcCCCccEEEEEcccceecceEEeEEeeee
Q psy9628 11 SMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--TSKYNFTSGKIIYNKFKSVVSYTTSDLPIF 88 (112)
Q Consensus 11 g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~--~~~~~~D~V~IiYn~F~s~isq~p~~~~lL 88 (112)
|+++.+++||+|++.+|.|+++..+...+++++..+|+|.++..|++. ..+++||++.|+||+|+|+++++|...+||
T Consensus 131 ~~e~~vv~iGdK~ra~l~R~~~~~i~ls~~eig~~pptf~~asvia~~il~~~~e~d~~~ivyNkF~SvVs~e~~~~~il 210 (304)
T KOG1531|consen 131 GKEVRVVIIGDKIRAILLRLHPNSILLSINEIGRAPPTFEDASVIADEILLSGYEFDKGSIVYNKFKSVVSYETSEKPIL 210 (304)
T ss_pred CCceEEEEEchhhhhheeecCchhhhhhHhhcCCCCCcHHHHHHHHHHHHhhhccccceEEEeecchhheeecccccccc
Confidence 789999999999999999999899999999998889999999999998 555699999999999999999999999999
Q ss_pred cCccccCCCCCCCchhhhhhhhc
Q psy9628 89 SLASVTAAPKLGVYDSLWKRCVE 111 (112)
Q Consensus 89 Pi~~~~~~~~~~~ye~~~~~~~~ 111 (112)
|++..++.+.+.-|+++++|+++
T Consensus 211 ~l~~i~~s~~l~~~d~iddev~q 233 (304)
T KOG1531|consen 211 PLETIEESESLSCYDSIDDEVLQ 233 (304)
T ss_pred CHHHhcccccccchhhhhHHHHh
Confidence 99888777777656657777764
No 3
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.66 E-value=4.7e-16 Score=117.92 Aligned_cols=80 Identities=10% Similarity=0.146 Sum_probs=70.7
Q ss_pred CCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeE
Q psy9628 9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTS 83 (112)
Q Consensus 9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~ 83 (112)
+.|+++.+++||+||.+||++++ ..+...+.++. ++|+|+.+..|++. ..+ ++|+|+|+||+|+|+++|+|+
T Consensus 109 ~~~~~~~~~~vG~kg~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~d~v~viy~~f~s~~~q~~~ 185 (289)
T PRK13427 109 KKGVNVELHIVGKKGISFFKFAG-EKAEKTYTHID-DKSGYKEAEELANLFMERFANE-SVDAVEIASTVYYSAASQKPE 185 (289)
T ss_pred hCCCcEEEEEEeHHHHHHHHHcC-CCceeeecccC-CccCHHHHHHHHHHHHHHHHcC-CCCEEEEEecccccceeccee
Confidence 35667899999999999998765 45777888886 68899999999986 677 999999999999999999999
Q ss_pred EeeeecCc
Q psy9628 84 DLPIFSLA 91 (112)
Q Consensus 84 ~~~lLPi~ 91 (112)
+++|||++
T Consensus 186 ~~~llP~~ 193 (289)
T PRK13427 186 TTRVLPLE 193 (289)
T ss_pred eEEeeCCC
Confidence 99999995
No 4
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.64 E-value=1.1e-15 Score=115.87 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=69.6
Q ss_pred CCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEE
Q psy9628 10 PSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSD 84 (112)
Q Consensus 10 ~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~ 84 (112)
.|+++.+++||+||++||++++. .+...+.+.. +.|+|+++..|++. ..+ ++|+|+|+||+|+|+++|+|.+
T Consensus 112 ~~~~~~l~~vG~Kg~~~l~~~~~-~i~~~~~~~~-~~p~~~~~~~i~~~~~~~~~~~-~~d~v~iiy~~f~s~~~~~~~~ 188 (290)
T PRK14111 112 MGRTVDVIAIGRKGRDFMVRTGQ-ALVAEFTRLG-DAPKLEAILPVATSAINGFQSG-KYDEVYVLYSEFINTLVQRPTI 188 (290)
T ss_pred CCCceEEEEEehHHHHHHHHcCC-CceeeeecCC-CCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEecccccceeeeeeE
Confidence 46678899999999999997664 5677777775 67899999999976 577 9999999999999999999999
Q ss_pred eeeecCc
Q psy9628 85 LPIFSLA 91 (112)
Q Consensus 85 ~~lLPi~ 91 (112)
.+|||++
T Consensus 189 ~~llP~~ 195 (290)
T PRK14111 189 KQLLPIE 195 (290)
T ss_pred EEecCCC
Confidence 9999995
No 5
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.63 E-value=1.6e-15 Score=115.08 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=69.4
Q ss_pred CCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEE
Q psy9628 10 PSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSD 84 (112)
Q Consensus 10 ~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~ 84 (112)
.|.++.+++||+||.++|++++ ..+...+.++...+++|..+..|++. ..+ ++|+|+|+||||+|+++|+|++
T Consensus 111 ~~~~~~l~~iG~Kg~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~i~~~l~~~~~~~-~~d~v~iiy~~f~s~~~~~~~~ 188 (291)
T PRK14110 111 EGVRVNLILIGRKGVQYFSKRG-YNIIKSYEDVFRKEINFSVVKEVGGILASRYIEE-ETDAVYLINNEMITRATYKPKV 188 (291)
T ss_pred CCCceEEEEehHHHHHHHHHcC-CCceeeeccccCCCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEecccccceeeeEEE
Confidence 5667889999999999998755 45777777775445699999999975 677 9999999999999999999999
Q ss_pred eeeecCc
Q psy9628 85 LPIFSLA 91 (112)
Q Consensus 85 ~~lLPi~ 91 (112)
.+|||++
T Consensus 189 ~~llP~~ 195 (291)
T PRK14110 189 RKFLPFE 195 (291)
T ss_pred EEecCCC
Confidence 9999995
No 6
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.63 E-value=1.8e-15 Score=114.87 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=70.2
Q ss_pred CCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEE
Q psy9628 10 PSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSD 84 (112)
Q Consensus 10 ~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~ 84 (112)
.+.++.+++||+||.++|++++ ..+...+.++. ++|+|..+..|++. ..+ ++|+|+|+||+|+|+++|+|.+
T Consensus 113 ~~~~~~l~~iG~Kg~~~~~~~~-~~i~~~~~~~~-~~~~~~~a~~i~~~~~~~~~~~-~~d~v~viy~~f~~~~~~~~~~ 189 (291)
T PRK13425 113 AKGGVSMICAGTRGFDFFRKRG-YNIVKGYPGVF-QNLDFSVAKEIAETASGMYLRG-EVDKVVVVYNEFKSVLAPNLKS 189 (291)
T ss_pred cCCceEEEEeeHHHHHHHHHcC-CCceeeecCcC-CCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEeccceeceeeeEEE
Confidence 4557789999999999998655 46788888885 68899999999986 677 9999999999999999999999
Q ss_pred eeeecCc
Q psy9628 85 LPIFSLA 91 (112)
Q Consensus 85 ~~lLPi~ 91 (112)
++|||++
T Consensus 190 ~~llP~~ 196 (291)
T PRK13425 190 EVLLPIT 196 (291)
T ss_pred EEeeCCC
Confidence 9999995
No 7
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.63 E-value=1.9e-15 Score=114.67 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=71.0
Q ss_pred CCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEE
Q psy9628 10 PSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSD 84 (112)
Q Consensus 10 ~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~ 84 (112)
.|+++.+++||+||.++|++++ ..+...+.++. +.|+|..+..|++. ..+ ++|+|+|+||+|+|+++|+|.+
T Consensus 110 ~~~~~~l~~vG~K~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~-~~d~v~viy~~f~s~~~~~~~~ 186 (291)
T PRK13424 110 EGKTVKFYCVGKKGRDAIRKTD-FEIVTAYADQM-TSFDFQLANSIGLEVIDGYLTG-ELDEVVLVYGEFVSMARQLPIT 186 (291)
T ss_pred CCCceEEEEeeHHHHHHHHHcC-CCeeEeeccCC-CCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEeccccccccCceEE
Confidence 5667889999999999998665 46788888886 68999999999976 677 9999999999999999999999
Q ss_pred eeeecCcc
Q psy9628 85 LPIFSLAS 92 (112)
Q Consensus 85 ~~lLPi~~ 92 (112)
++|||++.
T Consensus 187 ~~llP~~~ 194 (291)
T PRK13424 187 LQILPIAP 194 (291)
T ss_pred EEecCCCc
Confidence 99999963
No 8
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=99.62 E-value=3.2e-15 Score=113.07 Aligned_cols=80 Identities=34% Similarity=0.456 Sum_probs=68.6
Q ss_pred CCCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEe
Q psy9628 8 NAPSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTT 82 (112)
Q Consensus 8 ~~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p 82 (112)
...|.++.+++||+||.+||++++. .+...+.++. +.|+|..+..|++. ..+ ++|+|+|+||+|+|+++|+|
T Consensus 107 ~~~g~~~~l~~iG~K~~~~~~~~~~-~i~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~d~v~viy~~~~~~~~~~~ 183 (290)
T PF00231_consen 107 DDQGKEVKLIVIGKKGRDFLKKRGY-NIIASFNGIS-SDPTFEEASEIAEKLIDLYESG-EIDEVYVIYNKFKSAVSQEP 183 (290)
T ss_dssp CTTTSEEEEEEESHHHHHHHHCSST-TEEEEEESBT-SS--HHHHHHHHHHHHHHCCCC-S-SEEEEEEEEECSTTEEEE
T ss_pred cccCCceEEEEeCcchhhhhhhCCC-cceeeeeccc-chhhHHHHHHHHHHHHhhhhcC-CCCeEEEEEEEeccceeeeE
Confidence 3456789999999999999998664 5888888886 78999999999998 567 99999999999999999999
Q ss_pred EEeeeecC
Q psy9628 83 SDLPIFSL 90 (112)
Q Consensus 83 ~~~~lLPi 90 (112)
++++|||+
T Consensus 184 ~~~~llP~ 191 (290)
T PF00231_consen 184 VVEQLLPL 191 (290)
T ss_dssp EEEEESSS
T ss_pred Eeeehhhh
Confidence 99999997
No 9
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.62 E-value=2.2e-15 Score=114.68 Aligned_cols=81 Identities=14% Similarity=0.190 Sum_probs=67.6
Q ss_pred CCCCCeEEEEeCHhHHHHHhhhcCcceeee--eeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEE
Q psy9628 9 APSMTNQIITIGDKSRAILQRLYGNNIILA--ANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYT 81 (112)
Q Consensus 9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~--~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~ 81 (112)
+.|.++.+++||+||.+||+++++..+... +.+.+ ++|+|+.+..|++. ..+ ++|+|+|+||+|+|+++|+
T Consensus 108 ~~~~~~~l~~iG~K~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~-~~d~v~iiy~~f~s~~~q~ 185 (298)
T PRK13422 108 EDRVGVDVCVIGSKAENFFAKLKDVNIVATAHYNDKD-KEGSIRAIGGAVKVMLDKFTAG-EIDRLYMSSNQFVSTIKQR 185 (298)
T ss_pred hCCCceEEEEEChhHHHHHHHhcCCCceeeeeeccCC-CCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEeccccCCcccc
Confidence 356678899999999999986444455555 44443 57899999999976 677 9999999999999999999
Q ss_pred eEEeeeecCc
Q psy9628 82 TSDLPIFSLA 91 (112)
Q Consensus 82 p~~~~lLPi~ 91 (112)
|++++|||++
T Consensus 186 ~~~~~llP~~ 195 (298)
T PRK13422 186 PRLQTLLPIQ 195 (298)
T ss_pred eEEEEeeCCC
Confidence 9999999994
No 10
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.61 E-value=2.7e-15 Score=113.71 Aligned_cols=81 Identities=23% Similarity=0.244 Sum_probs=70.2
Q ss_pred CCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeE
Q psy9628 9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTS 83 (112)
Q Consensus 9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~ 83 (112)
++|+++.+++||+||.++|++++ ..+...+.++. ++|+|+.+..|++. ..+ ++|+|+|+||+|+|+++|+|.
T Consensus 108 ~~~~~~~l~~vG~k~~~~~~~~~-~~i~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~d~v~iiy~~f~n~~~q~~~ 184 (288)
T PRK13423 108 DEFEEISLTTVGRKGREFLKNRG-LIIRKNYGGVV-ANLTYETAALLAQELIEGYLAG-EYDEVYLVYNEFKSVMSQDIT 184 (288)
T ss_pred hcCCceEEEEecHHHHHHHHHcC-CCceeeecCcC-CCCCHHHHHHHHHHHHHHHhcC-CCCEEEEEeccccccccccee
Confidence 35667889999999999998755 46777777775 67899999999986 577 999999999999999999999
Q ss_pred EeeeecCcc
Q psy9628 84 DLPIFSLAS 92 (112)
Q Consensus 84 ~~~lLPi~~ 92 (112)
+++|||++.
T Consensus 185 ~~~llP~~~ 193 (288)
T PRK13423 185 VQQLLPIDP 193 (288)
T ss_pred EEEecCCCc
Confidence 999999963
No 11
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional
Probab=99.60 E-value=4.6e-15 Score=112.57 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=68.7
Q ss_pred CCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEEee
Q psy9628 12 MTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSDLP 86 (112)
Q Consensus 12 ~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~~~ 86 (112)
.++.+++||+||.++|++++ ..+...+.... +.|+|+.+..|++. ..+ ++|+|+|+||+|+|+++|+|++++
T Consensus 112 ~~~~~~~vG~k~~~~~~~~~-~~i~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~d~v~iiy~~f~s~~~q~~~~~~ 188 (291)
T PRK13426 112 DNILIYPVGKKIEEAVKKLG-FKVQGDYQTLA-DKPSYEEAAALAMRLMELFLEG-EIDKVELIYHHFKSMGVQVLTRET 188 (291)
T ss_pred CceEEEEeeHHHHHHHHHcC-CCceEeecccC-CCCCHHHHHHHHHHHHHHHhcC-CCCEEEEEecccccccccceeEEE
Confidence 56789999999999998755 46888887775 67899999999986 677 999999999999999999999999
Q ss_pred eecCc
Q psy9628 87 IFSLA 91 (112)
Q Consensus 87 lLPi~ 91 (112)
|||++
T Consensus 189 llPi~ 193 (291)
T PRK13426 189 YLPID 193 (291)
T ss_pred ecCCC
Confidence 99995
No 12
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP.
Probab=99.58 E-value=1.2e-14 Score=109.96 Aligned_cols=80 Identities=29% Similarity=0.481 Sum_probs=69.6
Q ss_pred CCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEE
Q psy9628 10 PSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSD 84 (112)
Q Consensus 10 ~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~ 84 (112)
.+.++.+++||+||.++|++++ ..+...+.+.. ++++|+.+..|++. ..+ ++|+|+|+||+|+|+++|+|.+
T Consensus 109 ~~~~~~l~~vG~k~~~~l~~~~-~~i~~~~~~~~-~~~~~~~~~~i~~~i~~~~~~~-~~d~v~viy~~f~~~~~~~~~~ 185 (287)
T TIGR01146 109 AGKEVKLVVIGRKGKSFFKRRG-DNIVLSITGLS-DQPTFEEASGIADKLLDAFASG-EFDEVYIVYNKFVSSISQEPTV 185 (287)
T ss_pred cCCceEEEEeeHHHHHHHHHcC-CCeeEeecccC-CCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEecccccceeeeEEE
Confidence 4556789999999999998654 46777887775 68899999999987 577 9999999999999999999999
Q ss_pred eeeecCcc
Q psy9628 85 LPIFSLAS 92 (112)
Q Consensus 85 ~~lLPi~~ 92 (112)
.+|||++.
T Consensus 186 ~~llP~~~ 193 (287)
T TIGR01146 186 KQLLPLSE 193 (287)
T ss_pred EEeeCCCc
Confidence 99999963
No 13
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=99.57 E-value=1.3e-14 Score=109.60 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=70.1
Q ss_pred CCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEE
Q psy9628 10 PSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSD 84 (112)
Q Consensus 10 ~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~ 84 (112)
+|.++.+++||+||.++|++++. .+...+.+.. +.|+|..+..|++. ..+ ++|+|+|+||+|+|+++|+|.+
T Consensus 108 ~~~~~~l~~iG~k~~~~l~~~~~-~i~~~~~~~~-~~~~~~~~~~i~~~i~~~~~~~-~~~~i~viy~~f~~~~~~~~~~ 184 (284)
T PRK05621 108 QGKEVKLIVIGRKGVDFFKRRGI-NVVAEYTGLG-DQPTFEEAIGIAKKLLDAYDNG-EFDELYIVYNKFVNTLSQEPTV 184 (284)
T ss_pred cCCceEEEEehHHHHHHHHHcCC-CceeeeeccC-CCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEecccccceecceEE
Confidence 45678899999999999987664 4777787776 57899999999986 577 9999999999999999999999
Q ss_pred eeeecCcc
Q psy9628 85 LPIFSLAS 92 (112)
Q Consensus 85 ~~lLPi~~ 92 (112)
++|||++.
T Consensus 185 ~~llP~~~ 192 (284)
T PRK05621 185 EQLLPLEK 192 (284)
T ss_pred EEeCCCCc
Confidence 99999963
No 14
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=99.45 E-value=4.5e-13 Score=101.47 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=61.4
Q ss_pred CCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----h----cCCCccEEEEEcccceecceEEe
Q psy9628 12 MTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----T----SKYNFTSGKIIYNKFKSVVSYTT 82 (112)
Q Consensus 12 ~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~----~~~~~D~V~IiYn~F~s~isq~p 82 (112)
.++.+++||+||.++|++++. .+...+. ..+++..+..|++. . .+ ++|+|+|+||+|+|+++|+|
T Consensus 104 ~~~~~~~iG~K~~~~~~~~~~-~i~~~~~----~~~~~~~~~~i~~~i~~~~~~~~~~~-~~d~v~iiY~~f~s~~~~~~ 177 (285)
T TIGR03323 104 GEATIWAVGERVASRLEDSGL-TIGELFR----LPNSVGAITPLVSELLIEVEARREQG-QLAELYLFFNRPSSGGSYEP 177 (285)
T ss_pred CCeEEEEECHHHHHHHHHcCC-CceEeec----CcCCHHHHHHHHHHHHHHHHhhhhcC-CCcEEEEEecccccCcccce
Confidence 456899999999999986553 4655553 34478888888865 3 77 99999999999999999999
Q ss_pred EEeeeecCc
Q psy9628 83 SDLPIFSLA 91 (112)
Q Consensus 83 ~~~~lLPi~ 91 (112)
++++|||++
T Consensus 178 ~~~~llP~~ 186 (285)
T TIGR03323 178 TCQRLLPLD 186 (285)
T ss_pred eeEEeeCCC
Confidence 999999995
No 15
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=34.01 E-value=1e+02 Score=19.53 Aligned_cols=36 Identities=8% Similarity=-0.059 Sum_probs=23.0
Q ss_pred CHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH
Q psy9628 20 GDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE 58 (112)
Q Consensus 20 GkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~ 58 (112)
-+|+..||..++. ...+.++.+.+++-++...+.+.
T Consensus 9 ~rka~~~L~~~gi---~~~~~d~~k~p~s~~el~~~l~~ 44 (110)
T PF03960_consen 9 CRKALKWLEENGI---EYEFIDYKKEPLSREELRELLSK 44 (110)
T ss_dssp HHHHHHHHHHTT-----EEEEETTTS---HHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CeEeehhhhCCCCHHHHHHHHHH
Confidence 3799999988653 33344554567999999888877
No 16
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=25.94 E-value=1.4e+02 Score=19.59 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=24.7
Q ss_pred HhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH
Q psy9628 21 DKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE 58 (112)
Q Consensus 21 kKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~ 58 (112)
||+..||+.++... .+.++.+++|+-++...+.+.
T Consensus 15 rka~~~L~~~gi~~---~~~~y~~~~~s~~eL~~~l~~ 49 (117)
T COG1393 15 RKALAWLEEHGIEY---TFIDYLKTPPSREELKKILSK 49 (117)
T ss_pred HHHHHHHHHcCCCc---EEEEeecCCCCHHHHHHHHHH
Confidence 79999998866432 222333468999998888776
No 17
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=24.91 E-value=1.8e+02 Score=18.50 Aligned_cols=35 Identities=9% Similarity=-0.034 Sum_probs=24.3
Q ss_pred HhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH
Q psy9628 21 DKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE 58 (112)
Q Consensus 21 kKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~ 58 (112)
+|+..||..++. ...+.++.+++|+-++...+...
T Consensus 13 rka~~~L~~~~i---~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 13 KKARKWLEARGV---AYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred HHHHHHHHHcCC---CeEEEecccCCCCHHHHHHHHHH
Confidence 689999987642 22333443578999999888764
No 18
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=23.74 E-value=1.6e+02 Score=19.01 Aligned_cols=35 Identities=11% Similarity=0.062 Sum_probs=24.8
Q ss_pred HhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH
Q psy9628 21 DKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE 58 (112)
Q Consensus 21 kKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~ 58 (112)
||+..||..++. ...+.++-+++|+.++...+...
T Consensus 14 rkA~~~L~~~gi---~~~~~d~~~~p~s~~eL~~~l~~ 48 (113)
T cd03033 14 ARQKALLEAAGH---EVEVRDLLTEPWTAETLRPFFGD 48 (113)
T ss_pred HHHHHHHHHcCC---CcEEeehhcCCCCHHHHHHHHHH
Confidence 699999987653 23334444578999999888775
No 19
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=23.18 E-value=1.9e+02 Score=18.53 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=24.9
Q ss_pred CHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH
Q psy9628 20 GDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE 58 (112)
Q Consensus 20 GkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~ 58 (112)
.||+..||..++. ...+.++.+.+|+-++...+.+.
T Consensus 12 ~rkA~~~L~~~~i---~~~~~di~~~p~t~~el~~~l~~ 47 (114)
T TIGR00014 12 SRNTLALLEDKGI---EPEVVKYLKNPPTKSELEAIFAK 47 (114)
T ss_pred HHHHHHHHHHCCC---CeEEEeccCCCcCHHHHHHHHHH
Confidence 4799999987543 22233443578999998888765
No 20
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=22.86 E-value=2e+02 Score=18.37 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=25.3
Q ss_pred CHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH
Q psy9628 20 GDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE 58 (112)
Q Consensus 20 GkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~ 58 (112)
.||+..||+.++. ...+.++.+++|+-++...+.+.
T Consensus 12 ~rkA~~~L~~~~i---~~~~~di~~~~~t~~el~~~l~~ 47 (112)
T cd03034 12 SRNALALLEEAGI---EPEIVEYLKTPPTAAELRELLAK 47 (112)
T ss_pred HHHHHHHHHHCCC---CeEEEecccCCcCHHHHHHHHHH
Confidence 4799999987642 22233444578899999888876
No 21
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=22.09 E-value=1.3e+02 Score=18.14 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHH-----------hcCCCccEEEEE
Q psy9628 46 PPTFLDASKVAQE-----------TSKYNFTSGKII 70 (112)
Q Consensus 46 ~~~f~~a~~Ia~~-----------~~~~~~D~V~Ii 70 (112)
+-|+++...+|.+ .+|+++|.|.+|
T Consensus 25 P~SleeLl~ia~~kfg~~~~~v~~~dgaeIdDI~~I 60 (69)
T PF11834_consen 25 PDSLEELLKIASEKFGFSATKVLNEDGAEIDDIDVI 60 (69)
T ss_pred CccHHHHHHHHHHHhCCCceEEEcCCCCEEeEEEEE
Confidence 3478888888887 455588888776
No 22
>PRK10853 putative reductase; Provisional
Probab=21.65 E-value=1.8e+02 Score=18.96 Aligned_cols=35 Identities=11% Similarity=-0.158 Sum_probs=24.6
Q ss_pred HhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH
Q psy9628 21 DKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE 58 (112)
Q Consensus 21 kKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~ 58 (112)
||+..||..++. ...+.++-+++|+-++...+...
T Consensus 14 rkA~~~L~~~~i---~~~~~d~~k~p~s~~eL~~~l~~ 48 (118)
T PRK10853 14 KKARRWLEAQGI---DYRFHDYRVDGLDSELLQGFIDE 48 (118)
T ss_pred HHHHHHHHHcCC---CcEEeehccCCcCHHHHHHHHHH
Confidence 699999987543 22344443568899999888765
No 23
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=21.26 E-value=2.3e+02 Score=18.85 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=24.2
Q ss_pred HhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH
Q psy9628 21 DKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE 58 (112)
Q Consensus 21 kKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~ 58 (112)
+|+..||..++. ...+.++.+++++.++...+.+.
T Consensus 14 rkA~~~L~~~~i---~~~~~d~~~~~~s~~eL~~~l~~ 48 (132)
T PRK13344 14 KKAKTWLNAHQL---SYKEQNLGKEPLTKEEILAILTK 48 (132)
T ss_pred HHHHHHHHHcCC---CeEEEECCCCCCCHHHHHHHHHH
Confidence 589999987653 23333454578899988888765
No 24
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=20.77 E-value=2.1e+02 Score=19.02 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=24.7
Q ss_pred HhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH
Q psy9628 21 DKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE 58 (112)
Q Consensus 21 kKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~ 58 (112)
||+..||..++. ...+.++-+++|+-++...+...
T Consensus 15 RKA~~~L~~~gi---~~~~~d~~~~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 15 ARQKAALKASGH---DVEVQDILKEPWHADTLRPYFGN 49 (126)
T ss_pred HHHHHHHHHCCC---CcEEEeccCCCcCHHHHHHHHHH
Confidence 699999987653 23334443578999998888775
Done!