Query psy9628
Match_columns 112
No_of_seqs 155 out of 1029
Neff 7.4
Searched_HMMs 29240
Date Sat Aug 17 00:36:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs0_G ATP synthase gamma subu 99.8 1.2E-19 4.1E-24 132.4 9.8 81 9-92 90-175 (230)
2 3oee_G ATP synthase subunit ga 99.8 4.8E-19 1.6E-23 132.6 9.1 80 13-93 104-188 (278)
3 3oaa_G ATP synthase gamma chai 99.8 1.8E-18 6.2E-23 129.9 10.7 82 9-93 107-193 (286)
4 2ck3_G ATP synthase subunit ga 99.7 5.2E-19 1.8E-23 132.0 2.0 83 9-92 98-183 (272)
5 2xok_G ATP synthase subunit ga 99.7 1.4E-17 4.8E-22 126.3 9.1 76 16-92 140-220 (311)
6 2qe7_G ATP synthase subunit ga 99.7 2.4E-18 8.3E-23 129.2 -0.0 81 9-92 108-193 (286)
7 4dkx_A RAS-related protein RAB 15.7 52 0.0018 22.4 1.1 27 1-27 1-29 (216)
8 4egs_A Ribose 5-phosphate isom 15.2 57 0.0019 21.9 1.2 27 1-27 24-50 (180)
9 2pk8_A Uncharacterized protein 13.6 1.5E+02 0.005 18.4 2.6 20 10-29 32-51 (103)
10 2g9p_A Antimicrobial peptide l 13.5 52 0.0018 15.0 0.4 11 19-29 10-20 (26)
No 1
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=99.81 E-value=1.2e-19 Score=132.38 Aligned_cols=81 Identities=15% Similarity=0.245 Sum_probs=72.0
Q ss_pred CCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeE
Q psy9628 9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTS 83 (112)
Q Consensus 9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~ 83 (112)
++|+++.+++||+||++||++++ ..+...+.+++ +.|+|.+|..|++. ..| ++|+|+|+||+|+|+++|+|+
T Consensus 90 ~~g~~~~l~~vG~Kg~~~~~~~~-~~i~~~~~~~~-~~p~~~~a~~i~~~i~~~~~~g-~~d~v~lvYn~f~s~~~q~p~ 166 (230)
T 1fs0_G 90 DKGVQCDLAMIGSKGVSFFNSVG-GNVVAQVTGMG-DNPSLSELIGPVKVMLQAYDEG-RLDKLYIVSNKFINTMSQVPT 166 (230)
T ss_dssp HTTCEEEEEEESHHHHHHHHHHC-CCEEEEECCCT-TCCCSHHHHHHHHHHHHHHHTT-SCSCEEEEEEEEEETTEEEEE
T ss_pred cCCCcEEEEEEeHHHHHHHHhCC-CceEEeecCCC-CCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEEeeecccEEeeEE
Confidence 35678899999999999999875 46888888886 68999999999988 467 999999999999999999999
Q ss_pred EeeeecCcc
Q psy9628 84 DLPIFSLAS 92 (112)
Q Consensus 84 ~~~lLPi~~ 92 (112)
+.+|||++.
T Consensus 167 ~~~lLP~~~ 175 (230)
T 1fs0_G 167 ISQLLPLPA 175 (230)
T ss_dssp EEEEESCC-
T ss_pred EEEecCCCh
Confidence 999999964
No 2
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} SCOP: c.49.2.0 PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 4b2q_G* 3oe7_G*
Probab=99.78 E-value=4.8e-19 Score=132.58 Aligned_cols=80 Identities=34% Similarity=0.556 Sum_probs=70.9
Q ss_pred CeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEEeee
Q psy9628 13 TNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSDLPI 87 (112)
Q Consensus 13 ~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~~~l 87 (112)
++.+++||+||++||++.++..+...+.+++.+.|+|.+|..|++. ..| ++|+|+||||+|+|+++|+|+..+|
T Consensus 104 ~~~l~~vG~Kg~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~i~~~~~~g-~~d~v~ivyn~f~s~~~q~~~~~~l 182 (278)
T 3oee_G 104 NADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAG-TYPKISIFYNDPVSSLSFEPSEKPI 182 (278)
T ss_dssp TCEEEEESHHHHHHHHHHCTTTEEEEECSCSSSCCCHHHHHHHHHHHHHTTCGG-GCSEEEEEEEEECSSSCEEEEEEEE
T ss_pred CeEEEEEehHHHHHHHHcCCCceEEeeccCCCCCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEecccccceeeeeEEEec
Confidence 5889999999999999866556777888874478999999999998 467 9999999999999999999999999
Q ss_pred ecCccc
Q psy9628 88 FSLASV 93 (112)
Q Consensus 88 LPi~~~ 93 (112)
||++..
T Consensus 183 lP~~~~ 188 (278)
T 3oee_G 183 FNAKTI 188 (278)
T ss_dssp CCHHHH
T ss_pred CCCCcc
Confidence 999653
No 3
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1}
Probab=99.77 E-value=1.8e-18 Score=129.89 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=73.1
Q ss_pred CCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeE
Q psy9628 9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTS 83 (112)
Q Consensus 9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~ 83 (112)
++|.++.+++||+||++||++++. .+...+.+++ +.|+|.++..|++. ..| ++|+|+||||+|+|+++|+|+
T Consensus 107 ~~~~~~~l~~vG~Kg~~~~~~~~~-~i~~~~~~~~-~~p~~~~~~~i~~~~~~~~~~g-~~d~v~lvyn~f~s~~~q~~~ 183 (286)
T 3oaa_G 107 DKGVQCDLAMIGSKGVSFFNSVGG-NVVAQVTGMG-DNPSLSELIGPVKVMLQAYDEG-RLDKLYIVSNKFINTMSQVPT 183 (286)
T ss_dssp TTTCEEEEEEESHHHHHHHHHHCC-CEEEEECCCT-TCCCHHHHHHHHHHHHHHHHTT-SCSEEEEEEEEEEETTEEEEE
T ss_pred hCCCceEEEEeeHHHHHHHHHcCC-CeEEeecccc-CCCCHHHHHHHHHHHHHHHhcC-CCCEEEEEEccccccccccee
Confidence 356789999999999999998776 5778888886 68999999999987 578 999999999999999999999
Q ss_pred EeeeecCccc
Q psy9628 84 DLPIFSLASV 93 (112)
Q Consensus 84 ~~~lLPi~~~ 93 (112)
+.+|||++..
T Consensus 184 ~~~lLPl~~~ 193 (286)
T 3oaa_G 184 ISQLLPLPAS 193 (286)
T ss_dssp EEECSSCCCC
T ss_pred EEEecCCCcc
Confidence 9999999754
No 4
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ...
Probab=99.73 E-value=5.2e-19 Score=132.04 Aligned_cols=83 Identities=48% Similarity=0.792 Sum_probs=45.5
Q ss_pred CCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH--h-cCCCccEEEEEcccceecceEEeEEe
Q psy9628 9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE--T-SKYNFTSGKIIYNKFKSVVSYTTSDL 85 (112)
Q Consensus 9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~--~-~~~~~D~V~IiYn~F~s~isq~p~~~ 85 (112)
++|+++.+++||+||++||+++.+..+...|.+++..+|+|+++..|++. . .+ ++|+|+|+||+|+|+++|+|++.
T Consensus 98 ~~g~~~~l~~vG~K~~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~~~~~~~-~~d~v~ivyn~f~s~~~q~p~~~ 176 (272)
T 2ck3_G 98 AAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGY-EFDEGSIIFNRFRSVISYKTEEK 176 (272)
T ss_dssp -------CCCBSHHHHHHC----------CBCSCSSSCCCHHHHHHHHHHC-----------CCCCCEECSSSCEECC--
T ss_pred ccCCceEEEEecHHHHHHHHhccCCceeeeecccCCCCCCHHHHHHHHHHHHHccC-CCceEEEEeeccccccceeeeee
Confidence 45667889999999999998633346777888886225999999999999 3 35 99999999999999999999999
Q ss_pred eeecCcc
Q psy9628 86 PIFSLAS 92 (112)
Q Consensus 86 ~lLPi~~ 92 (112)
+|||++.
T Consensus 177 ~lLPl~~ 183 (272)
T 2ck3_G 177 PIFSLDT 183 (272)
T ss_dssp -------
T ss_pred eccCCCc
Confidence 9999964
No 5
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.4e-17 Score=126.34 Aligned_cols=76 Identities=36% Similarity=0.567 Sum_probs=67.2
Q ss_pred EEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeEEeeeecC
Q psy9628 16 IITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSL 90 (112)
Q Consensus 16 l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~~~~lLPi 90 (112)
+++||+||++||+++++..+...+.+++...|+|.+|..|++. ..+ ++|+|+|+||+|+|+++|+|++.+|||+
T Consensus 140 l~~VG~Kg~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~i~~~~~~g-~~d~v~lvYn~f~s~~~q~p~~~~lLPl 218 (311)
T 2xok_G 140 IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAG-TYPKISIFYNDPVSSLSFEPSEKPIFNA 218 (311)
T ss_dssp EEEESHHHHHHHHTTSTTTEEEEEESCTTSCCCHHHHHHHHHHHHHTTCCT-TCSEEEEEEEECSSSSCCEEEEEEECCH
T ss_pred EEEechHHHHHHHHhcCCCeEEEecccCCCCCCHHHHHHHHHHHHHHHhcC-CcceEEEEeeccccceeeeEEEEEccCC
Confidence 9999999999999853456888888886338999999999998 466 9999999999999999999999999998
Q ss_pred cc
Q psy9628 91 AS 92 (112)
Q Consensus 91 ~~ 92 (112)
+.
T Consensus 219 ~~ 220 (311)
T 2xok_G 219 KT 220 (311)
T ss_dssp HH
T ss_pred cc
Confidence 63
No 6
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}
Probab=99.68 E-value=2.4e-18 Score=129.16 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=71.1
Q ss_pred CCCCCeEEEEeCHhHHHHHhhhcCcceeeeeeccCCCCCCHHHHHHHHHH-----hcCCCccEEEEEcccceecceEEeE
Q psy9628 9 APSMTNQIITIGDKSRAILQRLYGNNIILAANEVGRRPPTFLDASKVAQE-----TSKYNFTSGKIIYNKFKSVVSYTTS 83 (112)
Q Consensus 9 ~~g~~~~l~~IGkKg~~~l~r~~~~~i~~~~~~~~~~~~~f~~a~~Ia~~-----~~~~~~D~V~IiYn~F~s~isq~p~ 83 (112)
++|.++.+++||+||++||++++ ..+...+.+++ +.|+|.+|..|++. ..| ++|+|+||||+|+|+++|+|+
T Consensus 108 ~~~~~~~~~~iG~Kg~~~~~~~~-~~i~~~~~~~~-~~p~~~~a~~i~~~i~~~~~~~-~~d~v~lvyn~f~s~~~q~~~ 184 (286)
T 2qe7_G 108 QSKDEYVIFAVGRKGRDFFKKRG-YPVVEEVTGIS-DTPSLTEIQDIAQSAIGMFADE-TFDKLTIFYNEFVSPIVQRPV 184 (286)
T ss_dssp TTSSCCCCCCCSHHHHHHHHSSS-SCCSCCCSCCC-SSCCSTTTHHHHHHHHHHHSSS-SCSCCCCCCCCCSBTTBCCCC
T ss_pred ccCCceEEEEechHHHHHHHHcC-CCceeeeccCC-CCCCHHHHHHHHHHHHHHHhcC-CcceEEEEEeecccceeeeeE
Confidence 45677899999999999999875 45777888876 58999999999987 467 999999999999999999999
Q ss_pred EeeeecCcc
Q psy9628 84 DLPIFSLAS 92 (112)
Q Consensus 84 ~~~lLPi~~ 92 (112)
+.+|||++.
T Consensus 185 ~~~lLP~~~ 193 (286)
T 2qe7_G 185 EKQLLPLTS 193 (286)
T ss_dssp CCCCSSCCC
T ss_pred EEEecCCCc
Confidence 999999964
No 7
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=15.73 E-value=52 Score=22.39 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCeEEEEeCHh--HHHHH
Q psy9628 1 MSGTSSTNAPSMTNQIITIGDK--SRAIL 27 (112)
Q Consensus 1 ~~~~~~~~~~g~~~~l~~IGkK--g~~~l 27 (112)
||...+..+.-++++|++||.. |..-|
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsL 29 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSL 29 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHH
Confidence 4544444444457899999987 44444
No 8
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}
Probab=15.23 E-value=57 Score=21.91 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCCeEEEEeCHhHHHHH
Q psy9628 1 MSGTSSTNAPSMTNQIITIGDKSRAIL 27 (112)
Q Consensus 1 ~~~~~~~~~~g~~~~l~~IGkKg~~~l 27 (112)
|+|.+.|......+-++|.|.-.|+.+
T Consensus 24 ~~~g~~m~~~~mkVLFVC~GNiCRSpm 50 (180)
T 4egs_A 24 MTGGQQMGRGSMRVLFVCTGNTCRSPM 50 (180)
T ss_dssp ----------CCEEEEEESSSSSHHHH
T ss_pred CCCCCcCCCCCeEEEEEeCCCcccCHH
Confidence 456677777777899999999777655
No 9
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=13.58 E-value=1.5e+02 Score=18.42 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=17.4
Q ss_pred CCCCeEEEEeCHhHHHHHhh
Q psy9628 10 PSMTNQIITIGDKSRAILQR 29 (112)
Q Consensus 10 ~g~~~~l~~IGkKg~~~l~r 29 (112)
.|.+..++.+|+-++.|++.
T Consensus 32 dG~ePDIiL~G~eayef~~e 51 (103)
T 2pk8_A 32 DGFNPDIILFGREAYNFLSN 51 (103)
T ss_dssp TTCCCCEEEECHHHHHHHHH
T ss_pred cCCCCCeEEEcHHHHHHHHH
Confidence 57788899999999999974
No 10
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=13.51 E-value=52 Score=15.02 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=8.4
Q ss_pred eCHhHHHHHhh
Q psy9628 19 IGDKSRAILQR 29 (112)
Q Consensus 19 IGkKg~~~l~r 29 (112)
.|+|+.+|--+
T Consensus 10 fgrkaisyavk 20 (26)
T 2g9p_A 10 FGRKAISYAVK 20 (26)
T ss_dssp HTSHHHHHHHH
T ss_pred HhHHHHHHHHH
Confidence 58899988743
Done!