RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9628
         (112 letters)



>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
           second 'additional' domain {Escherichia coli [TaxId:
           562]}
          Length = 162

 Score = 25.5 bits (55), Expect = 1.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 20  GDKSRAILQRLYG 32
           GD +  +LQR+YG
Sbjct: 146 GDSNNKMLQRIYG 158


>d1zmba1 c.23.10.7 (A:1-282) Acetylxylan esterase related enzyme
           {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 282

 Score = 23.9 bits (51), Expect = 4.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 63  NFTSGKIIYNKFKSVVSYTTSD 84
           +F  GKI Y++F S +    +D
Sbjct: 261 DFALGKISYDEFTSELMKINND 282


>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 876

 Score = 23.8 bits (51), Expect = 7.4
 Identities = 6/30 (20%), Positives = 12/30 (40%)

Query: 21  DKSRAILQRLYGNNIILAANEVGRRPPTFL 50
            ++ +I   LY N+      E+  +   F 
Sbjct: 303 QRAESITAVLYPNDNFAQGKELRLKQQYFW 332


>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 142

 Score = 22.9 bits (49), Expect = 10.0
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 46 PPTFL----DASKVAQETSKYNFTSGKIIYNKFKSVVSYTTSDLPIFSLA 91
          P TFL    ++S+    T  +   S       F +V  YT  +L   +  
Sbjct: 28 PGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKKELSAVTFP 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.128    0.358 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 361,825
Number of extensions: 13342
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 5
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)