BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy963
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QAI|A Chain A, Crystal Structure Of The V-Type Atp Synthase Subunit F
From Pyrococcus Furiosus. Nesg Target Pfr7.
pdb|2QAI|B Chain B, Crystal Structure Of The V-Type Atp Synthase Subunit F
From Pyrococcus Furiosus. Nesg Target Pfr7
Length = 111
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 22/98 (22%)
Query: 13 GDEDSVVGFLLGGIGHQTIT--PPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIV 70
GD D+VVGF L G+ H+ L++V + + R L+ R DVGI+
Sbjct: 7 GDSDTVVGFRLAGV-HEAYEYDESLESV-------------ERARNKLRELLERDDVGII 52
Query: 71 LITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFH 108
LIT +A RI +++ +PI+L+IP + +
Sbjct: 53 LITERLAQRIGSLPEVK------FPIILQIPDKFGSIY 84
>pdb|3BPX|A Chain A, Crystal Structure Of Marr
pdb|3BPX|B Chain B, Crystal Structure Of Marr
Length = 148
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 36 QTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYP 95
Q + F VDK T A RTL R + G + + +R R+ L++ R ++ P
Sbjct: 53 QDELATFFHVDKGTIA-------RTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIP 105
Query: 96 IVLEIPSALDAFHYTITDED------KQCRNIA 122
++L++ + + ED K CR +A
Sbjct: 106 LILKVEERWEDLLFRDFTEDERKLFRKMCRRLA 138
>pdb|3BPV|A Chain A, Crystal Structure Of Marr
Length = 138
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 36 QTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYP 95
Q + F VDK T A RTL R + G + + +R R+ L++ R ++ P
Sbjct: 46 QDELATFFHVDKGTIA-------RTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIP 98
Query: 96 IVLEIPSALDAFHYTITDED------KQCRNIA 122
++L++ + + ED K CR +A
Sbjct: 99 LILKVEERWEDLLFRDFTEDERKLFRKMCRRLA 131
>pdb|3VR6|H Chain H, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 115
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
Query: 9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
+G++GD+DSV F L G F V T EI + + + G
Sbjct: 5 IGVVGDKDSVSPFRLFG-----------------FDVQHGTTKTEIRKTIDEMAKN-EYG 46
Query: 69 IVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
++ IT A+ + T I Q+ P ++ IPS
Sbjct: 47 VIYITEQCANLVPET--IERYKGQLTPAIILIPS 78
>pdb|3AON|B Chain B, Crystal Structure Of The Central Axis (Ntpd-Ntpg) In The
Catalytic Portion Of Enterococcus Hirae V-Type Sodium
Atpase
pdb|3VR4|H Chain H, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|H Chain H, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 115
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
+G++GD+DSV F L G F V T EI + + G
Sbjct: 5 IGVVGDKDSVSPFRLFG-----------------FDVQHGTTKTEIRKTIDEXAKN-EYG 46
Query: 69 IVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
++ IT A+ + T I Q+ P ++ IPS
Sbjct: 47 VIYITEQCANLVPET--IERYKGQLTPAIILIPS 78
>pdb|2I4R|A Chain A, Crystal Structure Of The V-Type Atp Synthase Subunit F
From Archaeoglobus Fulgidus. Nesg Target Gr52a.
pdb|2I4R|B Chain B, Crystal Structure Of The V-Type Atp Synthase Subunit F
From Archaeoglobus Fulgidus. Nesg Target Gr52a
Length = 102
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 11 LIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIV 70
++GD D +GF L GI S+++ V T +EI A +++R DVG+V
Sbjct: 14 VVGDPDFTIGFXLAGI-------------SDIYEV---TSDEEIVKAVEDVLKRDDVGVV 57
Query: 71 LITRLVADRIRHTLDIRERSNQVYPIVLEI 100
+ + ++ L RE +V P + +
Sbjct: 58 IXKQEYLKKLPPVLR-REIDEKVEPTFVSV 86
>pdb|3ERP|A Chain A, Structure Of Idp01002, A Putative Oxidoreductase From And
Essential Gene Of Salmonella Typhimurium
pdb|3ERP|B Chain B, Structure Of Idp01002, A Putative Oxidoreductase From And
Essential Gene Of Salmonella Typhimurium
Length = 353
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 46 DKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRE 88
D ETP E A LVR V I+ AD R +DI E
Sbjct: 162 DPETPLKETMKALDHLVRHGKALYVGISNYPADLARQAIDILE 204
>pdb|3RQT|A Chain A, 1.5 Angstrom Crystal Structure Of The Complex Of Ligand
Binding Component Of Abc-Type Import System From
Staphylococcus Aureus With Nickel And Two Histidines
Length = 486
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 78 DRIRHTLDIRERSNQVYPIV----LEIPSALDAFHYTITDEDKQCRNIATLPK 126
+++ HT+D++ER N I+ ++P++ A++ I + + +N P+
Sbjct: 421 NQLNHTVDVKERHNISNDIIKLSSRDVPNSYIAYNDQIVAANSKVKNYKVTPE 473
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,467,178
Number of Sequences: 62578
Number of extensions: 122619
Number of successful extensions: 302
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 11
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)