BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy963
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P50408|VATF_RAT V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1
SV=1
Length = 119
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%)
Query: 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
+L+ +IGDED+V GFLLGGIG + N VV+K+T +EIED FR + R D
Sbjct: 6 KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
+GI+LI + +A+ +RH LD +RS P VLEIPS
Sbjct: 61 IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93
>sp|Q9D1K2|VATF_MOUSE V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2
Length = 119
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%)
Query: 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
+L+ +IGDED+V GFLLGGIG + N VV+K+T +EIED FR + R D
Sbjct: 6 KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
+GI+LI + +A+ +RH LD +RS P VLEIPS
Sbjct: 61 IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93
>sp|Q28029|VATF_BOVIN V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2
Length = 119
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%)
Query: 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
+L+ +IGDED+V GFLLGGIG + N VV+K+T +EIED FR + R D
Sbjct: 6 KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
+GI+LI + +A+ +RH LD +RS P VLEIPS
Sbjct: 61 IGIILINQYIAEMVRHALDAHQRS---IPAVLEIPS 93
>sp|Q16864|VATF_HUMAN V-type proton ATPase subunit F OS=Homo sapiens GN=ATP6V1F PE=1 SV=2
Length = 119
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 8/96 (8%)
Query: 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
+L+ +IGDED+V GFLLGGIG + N VV+K+T +EIED FR + R D
Sbjct: 6 KLIAVIGDEDTVTGFLLGGIGELN-----KNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
+GI+LI + +A+ +RH LD ++S P VLEIPS
Sbjct: 61 IGIILINQYIAEMVRHALDAHQQS---IPAVLEIPS 93
>sp|Q9Y756|VATF_NEUCR V-type proton ATPase subunit F OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=vma-7 PE=3 SV=1
Length = 124
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 57/97 (58%), Gaps = 7/97 (7%)
Query: 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAF-RTLVRRT 65
Q + +IGDEDSV G LL GIGH T P Q N VVD +T IE AF R R
Sbjct: 12 QFLAVIGDEDSVTGLLLAGIGHVTAPPDSQ---KNFLVVDNKTDNAAIEAAFDRFTTERK 68
Query: 66 DVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
D+GIVLI + +ADRIRH +D +P VLEIPS
Sbjct: 69 DIGIVLINQHIADRIRHRVDTH---TAAFPTVLEIPS 102
>sp|P31478|VATF_MANSE V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1
Length = 124
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 58/96 (60%), Gaps = 8/96 (8%)
Query: 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
+L+ +IGDED+ VGFLLGGIG + N VVDK TP EIE+ F+ V+R D
Sbjct: 10 KLISVIGDEDTCVGFLLGGIGEIN-----KNRHPNFMVVDKNTPVSEIEECFKRFVKRDD 64
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
+ I+LI + VA+ +RH +D P VLEIPS
Sbjct: 65 IDIILINQNVAELVRHVIDAHTAP---VPSVLEIPS 97
>sp|Q9I8H3|VATF_XENLA V-type proton ATPase subunit F (Fragment) OS=Xenopus laevis
GN=atp6s14 PE=3 SV=1
Length = 110
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 57/92 (61%), Gaps = 8/92 (8%)
Query: 11 LIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIV 70
+IGDED+V GFLLGGIG + N VV+KET EIE+ FR+ + R D+GI+
Sbjct: 1 VIGDEDTVTGFLLGGIGELN-----KNRKPNFLVVEKETSVTEIEETFRSFLNRDDIGII 55
Query: 71 LITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
LI + +A+ IRH +D S P VLEIPS
Sbjct: 56 LINQFIAEMIRHVIDTHTIS---IPAVLEIPS 84
>sp|Q55AH5|VATF_DICDI V-type proton ATPase subunit F OS=Dictyostelium discoideum GN=vatF
PE=3 SV=1
Length = 120
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 8/95 (8%)
Query: 8 LVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDV 67
LV +IGDED V GFLL G+G + + N VVD +T +IE AF++ R D+
Sbjct: 11 LVAVIGDEDVVTGFLLAGVGQKD-----KKKNENFLVVDSKTSQAKIETAFKSFTTRNDI 65
Query: 68 GIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
I++IT+ VAD IR+ +D +QV P +LEIPS
Sbjct: 66 AIIMITQKVADEIRYLID---EYHQVIPTILEIPS 97
>sp|O44091|VATF1_DROPS V-type proton ATPase subunit F 1 OS=Drosophila pseudoobscura
pseudoobscura GN=Vha14 PE=2 SV=2
Length = 124
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 8/96 (8%)
Query: 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
+L+ +IGDED+ VGFLLGG+G + N VVDK TP E+ED F+ ++R D
Sbjct: 10 KLISVIGDEDTCVGFLLGGVGEIN-----KNRHPNFMVVDKNTPVSELEDCFKRFLKRDD 64
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
+ I+LI + A+ IRH +D P VLEIPS
Sbjct: 65 IDIILINQNCAELIRHVIDAH---TSPVPAVLEIPS 97
>sp|A6RRW0|VATF_BOTFB V-type proton ATPase subunit F OS=Botryotinia fuckeliana (strain
B05.10) GN=vma7 PE=3 SV=1
Length = 124
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 58/97 (59%), Gaps = 7/97 (7%)
Query: 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAF-RTLVRRT 65
Q + +IGDEDSV G LL GIGH T P Q N VVD +T IE+AF R R
Sbjct: 12 QFLAVIGDEDSVTGLLLAGIGHVTSPPDSQ---KNFLVVDNKTDNAAIEEAFERFTTERK 68
Query: 66 DVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
D+GI+LI + +A+RIRH +D +P +LEIPS
Sbjct: 69 DIGILLINQHIAERIRHRVDT---YTAAFPALLEIPS 102
>sp|Q1HQK8|VATF_AEDAE V-type proton ATPase subunit F OS=Aedes aegypti GN=AAEL002464 PE=2
SV=1
Length = 127
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
+L+ +IGDED+ VGFLLGGIG + N VVDK T EIED F+ ++R D
Sbjct: 10 KLISVIGDEDTCVGFLLGGIGEIN-----KNRHPNFMVVDKNTAVSEIEDCFKRFIKRDD 64
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
+ I+LI + A+ IRH +D P VLEIPS
Sbjct: 65 IDIILINQNYAEMIRHVIDAHTSPT---PAVLEIPS 97
>sp|A1DH48|VATF_NEOFI V-type proton ATPase subunit F OS=Neosartorya fischeri (strain ATCC
1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=vma7 PE=3
SV=1
Length = 124
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 58/97 (59%), Gaps = 7/97 (7%)
Query: 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVR-RT 65
Q + +IGDEDSV G LL GIGH T P Q N VVD +T IE AF+ + R
Sbjct: 12 QFLAVIGDEDSVTGLLLAGIGHVTDGPDAQ---RNFLVVDSKTETSAIEKAFQNFTQERK 68
Query: 66 DVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
D+ ++LI + +A+RIRH++D +P VLEIPS
Sbjct: 69 DIAVLLINQHIAERIRHSVD---SFADPFPAVLEIPS 102
>sp|Q23680|VATF_CAEEL Probable V-type proton ATPase subunit F OS=Caenorhabditis elegans
GN=vha-9 PE=3 SV=1
Length = 121
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 8/96 (8%)
Query: 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
+++ +IGDED+VVGFLLGG+G + N +VDK+T EIE+AF R D
Sbjct: 8 KILAVIGDEDTVVGFLLGGVGELN-----KARKPNYLIVDKQTTVQEIEEAFNGFCARDD 62
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
+ I+LI + +A+ IR+ +D Q P VLEIPS
Sbjct: 63 IAIILINQHIAEMIRYAVD---NHTQSIPAVLEIPS 95
>sp|Q17029|VATF_ANOGA V-type proton ATPase subunit F OS=Anopheles gambiae GN=Vha14 PE=2
SV=2
Length = 127
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
+L+ +IGDED+ VGFLLGG+G + N VVDK T EIED F+ ++R D
Sbjct: 10 KLISVIGDEDTCVGFLLGGVGEIN-----KNRHPNFMVVDKNTAVSEIEDCFKRFIKRDD 64
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
+ I+LI + A+ IRH +D P VLEIPS
Sbjct: 65 IDIILINQNYAELIRHVID---SHTAPTPAVLEIPS 97
>sp|Q24583|VATF1_DROME V-type proton ATPase subunit F 1 OS=Drosophila melanogaster
GN=Vha14-1 PE=1 SV=1
Length = 124
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66
+L+ +IGDED+ VGFLLGG+G + N VVDK T E+ED F+ ++R D
Sbjct: 10 KLISVIGDEDTCVGFLLGGVGEIN-----KNRHPNFMVVDKNTAVSELEDCFKRFLKRDD 64
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
+ I+LI + A+ IRH +D P VLEIPS
Sbjct: 65 IDIILINQNCAELIRHVIDAH---TSPVPAVLEIPS 97
>sp|Q9ZQX4|VATF_ARATH V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F
PE=2 SV=1
Length = 128
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 8/95 (8%)
Query: 8 LVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDV 67
L+ +I DED+VVGFL+ G+G+ I +N +VD +T +IEDAF+ R D+
Sbjct: 14 LIAMIADEDTVVGFLMAGVGNVDIRR-----KTNYLIVDSKTTVRQIEDAFKEFSARDDI 68
Query: 68 GIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
I+L+++ +A+ IR +D N+ P +LEIPS
Sbjct: 69 AIILLSQYIANMIRFLVD---SYNKPVPAILEIPS 100
>sp|O43046|VATF_SCHPO V-type proton ATPase subunit F OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vma7 PE=3 SV=1
Length = 120
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 9/101 (8%)
Query: 8 LVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTL-VRRTD 66
LV +IGD+D+V G LL G G + N F++ ++T ++I +AF +R D
Sbjct: 11 LVSVIGDDDTVTGMLLAGTGQVN-----ENGDKNFFIITQKTTDEQIAEAFDDYTTKRKD 65
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAF 107
+ IVLI + A+RIR + E Q +P VLEIPS D +
Sbjct: 66 IAIVLINQFAAERIRDRI---ENHVQAFPAVLEIPSKDDPY 103
>sp|P39111|VATF_YEAST V-type proton ATPase subunit F OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=VMA7 PE=1 SV=1
Length = 118
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 1 MAEEVLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDK-ETPADEIEDAFR 59
MAE+ L+ +I DED+ G LL GIG ITP +T N FV + +T +EI D F
Sbjct: 1 MAEK-RTLIAVIADEDTTTGLLLAGIGQ--ITP--ETQEKNFFVYQEGKTTKEEITDKFN 55
Query: 60 TLV-RRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
R D+ I+LI + +A+ IR +D +P +LEIPS
Sbjct: 56 HFTEERDDIAILLINQHIAENIRARVD---SFTNAFPAILEIPS 96
>sp|A7TMI5|VATF_VANPO V-type proton ATPase subunit F OS=Vanderwaltozyma polyspora (strain
ATCC 22028 / DSM 70294) GN=VMA7 PE=3 SV=1
Length = 119
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 8 LVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVV-DKETPADEIEDAFRTLVR-RT 65
L+ +IGDED+ G LL GIG T +T N F+ D +T ++I + F + R
Sbjct: 8 LIAVIGDEDTTTGLLLAGIGQIT----KETNEKNFFIYEDGKTTKEQILNNFINYTQERQ 63
Query: 66 DVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
D+ I+LI + +A++IR +D +P +LEIPS
Sbjct: 64 DIAILLINQHIAEKIRSDID---NYTNAFPAILEIPS 97
>sp|Q9VNL3|VATF2_DROME Probable V-type proton ATPase subunit F 2 OS=Drosophila
melanogaster GN=Vha14-2 PE=3 SV=2
Length = 129
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 42 VFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIP 101
VF +T +IE+ F+ +RR D+ I+LI ++ AD IR T+D N P VLEIP
Sbjct: 45 VFHCIPDTTPKQIEECFKKFLRRPDIVIILINQVYADMIRPTVDAH---NLAVPTVLEIP 101
Query: 102 SALDAFHYTITDEDKQCRNIATLPKK 127
S + + K+ + + T P++
Sbjct: 102 SKQHPYDSSRDSILKRAQRVITPPER 127
>sp|Q8U4A7|VATF_PYRFU V-type ATP synthase subunit F OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=atpF PE=1 SV=1
Length = 103
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 22/100 (22%)
Query: 11 LIGDEDSVVGFLLGGIGHQTIT--PPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
++GD D+VVGF L G+ H+ L++V + + R L+ R DVG
Sbjct: 5 VMGDSDTVVGFRLAGV-HEAYEYDESLESV-------------ERARNKLRELLERDDVG 50
Query: 69 IVLITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFH 108
I+LIT +A RI +++ +PI+L+IP + +
Sbjct: 51 IILITERLAQRIGSLPEVK------FPIILQIPDKFGSIY 84
>sp|C6A5E9|VATF_THESM V-type ATP synthase subunit F OS=Thermococcus sibiricus (strain MM
739 / DSM 12597) GN=atpF PE=3 SV=1
Length = 102
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 19/98 (19%)
Query: 11 LIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIV 70
++GD+D+V+GF L G+ H+T + + T + + + + L+ R DVG++
Sbjct: 5 VLGDKDTVLGFRLAGV-HETYS--FEDTTHEI---------ERVRNKIMELIEREDVGVI 52
Query: 71 LITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFH 108
LIT +A R+ E + +PI+L+IP + +
Sbjct: 53 LITERLAQRV-------EIPDVAFPIILQIPDKYGSLY 83
>sp|O57727|VATF_PYRHO V-type ATP synthase subunit F OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=atpF PE=3 SV=1
Length = 103
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 11 LIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIV 70
++GD D+VVGF L GI H+ L E + + + LV R DVGI+
Sbjct: 5 IMGDSDTVVGFRLAGI-HEAYEFDLS-----------ELSIERARNKLKELVERDDVGII 52
Query: 71 LITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFH 108
LIT +A +I + PI+L+IP + +
Sbjct: 53 LITERLAQKIGELPQVN------LPIILQIPDKFGSIY 84
>sp|O27037|VATF_METTH V-type ATP synthase subunit F OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=atpF PE=3 SV=1
Length = 106
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 18/93 (19%)
Query: 9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
+ ++GD D+V GF LGG+ +VV ETP DE E+ R L+ R
Sbjct: 5 IAVVGDRDTVTGFRLGGVREG-------------YVV--ETP-DEAEETIRNLI-RDGFS 47
Query: 69 IVLITRLVADRIRHTLDIRERSNQVYPIVLEIP 101
I+++T + D +R ++ S+ P+++EIP
Sbjct: 48 IIIVTEKIGDELREFIE-ETTSSSALPMIIEIP 79
>sp|Q5JIR4|VATF_PYRKO V-type ATP synthase subunit F OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=atpF PE=3 SV=1
Length = 102
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 23/95 (24%)
Query: 9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPAD--EIEDAFRTLVRRTD 66
+ ++GD D+V+GF L G+ H+ + F +ETP D +++ L+ R D
Sbjct: 3 IAVLGDSDTVLGFRLAGV-HE----------AYAF---EETPLDIERLKNKLNELIERED 48
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIP 101
VGI+LIT +A+++ E + PI+L++P
Sbjct: 49 VGIILITERLAEKV-------EIPDVKLPIILQVP 76
>sp|C5A335|VATF_THEGJ V-type ATP synthase subunit F OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=atpF PE=3 SV=1
Length = 102
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 25/96 (26%)
Query: 9 VGLIGDEDSVVGFLLGGIGHQTIT---PPLQTVTSNVFVVDKETPADEIEDAFRTLVRRT 65
+ ++GD D+ +GF L G H+ + PL+ +N + + LV R
Sbjct: 3 IAVMGDPDTALGFKLAG-AHEVYSFGSSPLEIERAN--------------NKLKELVERD 47
Query: 66 DVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIP 101
D+GI+LIT +A R+ E +PI+L+IP
Sbjct: 48 DIGIILITETLAQRV-------EVPEVEFPIILQIP 76
>sp|Q9UXU6|VATF_PYRAB V-type ATP synthase subunit F OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=atpF PE=3 SV=1
Length = 103
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 11 LIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIV 70
++GD D+V GF L G+ H+ E + + + LV R DVGI+
Sbjct: 5 VMGDSDTVTGFRLAGV-HEAYEFDFS-----------ELSIERARNKLKELVERDDVGII 52
Query: 71 LITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFH 108
LIT +A RI + PI+L+IP + +
Sbjct: 53 LITERLAQRIGDLPQVN------LPIILQIPDKFGSIY 84
>sp|O06503|VATF_DESSY V-type ATP synthase subunit F OS=Desulfurococcus sp. (strain SY)
GN=atpF PE=3 SV=1
Length = 102
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 23/95 (24%)
Query: 9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETP--ADEIEDAFRTLVRRTD 66
+ ++GD D+ +GF L G V+ + +TP + + + + LV R D
Sbjct: 3 IAVLGDRDTALGFKLAG-------------AHEVYAFE-DTPLEMERLRNKLKELVERGD 48
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIP 101
VGI+LIT A R+ E + PI+L++P
Sbjct: 49 VGIILITERFAQRV-------EIPDVTIPIILQVP 76
>sp|B6YV13|VATF_THEON V-type ATP synthase subunit F OS=Thermococcus onnurineus (strain
NA1) GN=atpF PE=3 SV=1
Length = 102
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 23/95 (24%)
Query: 9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPAD--EIEDAFRTLVRRTD 66
+ ++GD+D+ +GF L G H+ + ++TP D +++ LV R D
Sbjct: 3 IAVLGDKDTALGFKLAG-AHEVYSF-------------EDTPLDMERLKNKLNELVERED 48
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIP 101
+GI+LIT +I + +PI+L++P
Sbjct: 49 IGIILITERFVQKIGL-------PDVTFPIILQVP 76
>sp|Q48440|HPAB_KLEOX 4-hydroxyphenylacetate 3-monooxygenase oxygenase component
OS=Klebsiella oxytoca GN=hpaB PE=2 SV=1
Length = 520
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 10/44 (22%)
Query: 28 HQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVL 71
H + PP +D+ PADE++D + L + TD GI++
Sbjct: 155 HAIVNPP----------IDRHKPADEVKDVYIKLEKETDAGIIV 188
>sp|Q85G59|PSBA_CYAME Photosystem Q(B) protein OS=Cyanidioschyzon merolae GN=psbA PE=3
SV=1
Length = 360
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 18 VVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVA 77
VVG L IG T+ L N VVD E + + + ++ R ++GI ++
Sbjct: 280 VVGIWLTAIGISTMAFNLNGFNFNQSVVDSE---GRVINTWADILNRANLGI----EVMH 332
Query: 78 DRIRHTLDIRERSNQVYPIVLEIPS 102
+R H + SN V P+ L PS
Sbjct: 333 ERNAHNFPLDLASNSVVPVALTAPS 357
>sp|P24726|PSBA_ECTSI Photosystem Q(B) protein OS=Ectocarpus siliculosus GN=psbA PE=3
SV=1
Length = 360
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 18 VVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVA 77
VVG L +G T+ L N VVD E + + + ++ R D+G+ ++
Sbjct: 280 VVGIWLTALGVSTMAFNLNGFNFNQSVVDSE---GRVINTWADIINRADLGM----EVMH 332
Query: 78 DRIRHTLDIRERSNQVYPIVLEIPS 102
+R H + SN++ P+ + PS
Sbjct: 333 ERNAHNFPLDLASNEILPVAISAPS 357
>sp|B0S2A3|VATF_FINM2 V-type ATP synthase subunit F OS=Finegoldia magna (strain ATCC
29328) GN=atpF PE=3 SV=1
Length = 103
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 24/96 (25%)
Query: 9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVR--RTD 66
V ++GD DSV+ F G+ +VF + E DA +T+ R + D
Sbjct: 5 VAVVGDRDSVLVFKALGV--------------DVF------ESIESTDARKTVDRLAKED 44
Query: 67 VGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
G++ IT +A++I+ T+D +++V P ++ IPS
Sbjct: 45 YGVIFITEQIAEKIKETID--RYNDKVSPAIILIPS 78
>sp|Q8RI76|VATF_FUSNN V-type ATP synthase subunit F OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=atpF PE=3 SV=1
Length = 105
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 24/117 (20%)
Query: 4 EVLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVR 63
+++ + +IGD+DSV+ F + G+ +VF+ + ++A +T+ R
Sbjct: 2 KLMYKIAVIGDKDSVLAFKILGV--------------DVFI------TLDAQEARKTIDR 41
Query: 64 --RTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQC 118
+ + GI+ +T +A I T I+ ++++ P V+ IPS + + +T+ DK
Sbjct: 42 IAKENYGIIFVTEQLAKDIPET--IKRYNSEIIPAVILIPSNKGSLNIGLTNIDKNV 96
>sp|Q8XJW4|VATF_CLOPE V-type ATP synthase subunit F OS=Clostridium perfringens (strain 13
/ Type A) GN=atpF PE=3 SV=1
Length = 105
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 24/101 (23%)
Query: 4 EVLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTL-- 61
++ + +G++GD+DSV+ F GI +VF P E E+A +T+
Sbjct: 2 DMYKKIGVVGDKDSVLAFKALGI--------------DVF------PVVEDEEARKTIDK 41
Query: 62 VRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
+ T ++ +T VA I T I + QV P V+ IPS
Sbjct: 42 LAMTGYAVIFVTEHVAKNIEET--IERYTRQVLPAVILIPS 80
>sp|B2TP92|VATF_CLOBB V-type ATP synthase subunit F OS=Clostridium botulinum (strain
Eklund 17B / Type B) GN=atpF PE=3 SV=1
Length = 103
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 26/101 (25%)
Query: 5 VLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTL--V 62
+ + +G++GD+DSV+ F GI +VF P E+A +T+ +
Sbjct: 1 MFKKIGVVGDKDSVLAFKALGI--------------DVF------PVVGNEEAKKTVDKL 40
Query: 63 RRTDVGIVLITRLVADRIRHTLDIRERSN-QVYPIVLEIPS 102
+ D +V +T VA I T+ ER N +V P V+ IPS
Sbjct: 41 AKNDYAVVFVTEHVAQGIEETI---ERYNKEVLPAVILIPS 78
>sp|B2UWY5|VATF_CLOBA V-type ATP synthase subunit F OS=Clostridium botulinum (strain
Alaska E43 / Type E3) GN=atpF PE=3 SV=1
Length = 103
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 26/101 (25%)
Query: 5 VLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTL--V 62
+ + +G++GD+DSV+ F GI +VF P E+A +T+ +
Sbjct: 1 MFKKIGVVGDKDSVLAFKALGI--------------DVF------PVVGNEEAKKTVDKL 40
Query: 63 RRTDVGIVLITRLVADRIRHTLDIRERSN-QVYPIVLEIPS 102
+ D +V +T VA I T+ ER N +V P V+ IPS
Sbjct: 41 AKNDYAVVFVTEHVAQGIEETI---ERYNKEVLPAVILIPS 78
>sp|O29102|VATF_ARCFU V-type ATP synthase subunit F OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=atpF PE=1 SV=1
Length = 101
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 17/90 (18%)
Query: 6 LQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRT 65
++ + ++GD D +GF+L GI S+++ V T +EI A +++R
Sbjct: 1 MKKLAVVGDPDFTIGFMLAGI-------------SDIYEV---TSDEEIVKAVEDVLKRD 44
Query: 66 DVGIVLITRLVADRIRHTLDIRERSNQVYP 95
DVG+V+I + ++ L RE +V P
Sbjct: 45 DVGVVIIKQEYLKKLPPVLR-REIDEKVEP 73
>sp|Q8KD79|THIE_CHLTE Thiamine-phosphate synthase OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=thiE PE=3 SV=1
Length = 204
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 23 LGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRR 64
+GGIGH ++ S + V+ + +D+ E A R LVRR
Sbjct: 160 IGGIGHDNAAEVIRAGASGIAVISAVSDSDDPETATRELVRR 201
>sp|Q7VGZ3|RSMA_HELHP Ribosomal RNA small subunit methyltransferase A OS=Helicobacter
hepaticus (strain ATCC 51449 / 3B1) GN=rsmA PE=3 SV=1
Length = 283
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 34 PLQTVTSNVFVVDKETPADEIEDAF 58
P+ VTS+VFV+ K + ++IED+F
Sbjct: 177 PMPKVTSSVFVIHKYSQQNQIEDSF 201
>sp|Q57160|HPAB_ECOLX 4-hydroxyphenylacetate 3-monooxygenase oxygenase component
OS=Escherichia coli GN=hpaB PE=1 SV=1
Length = 520
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Query: 28 HQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVL 71
H + PP +D+ P D+++D + L + TD GI++
Sbjct: 155 HAIVNPP----------IDRHLPTDKVKDVYIKLEKETDAGIIV 188
>sp|Q6LYE8|VATF_METMP V-type ATP synthase subunit F OS=Methanococcus maripaludis (strain
S2 / LL) GN=atpF PE=3 SV=1
Length = 99
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 22/93 (23%)
Query: 9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
+G++GD D V GF L G+ ++V+ V+ A + A L +++G
Sbjct: 3 IGVVGDPDVVAGFRLAGL-------------TDVYEVNSPEQAAK---AIEELNSNSEIG 46
Query: 69 IVLITRLVADRIRHTLDIRERSNQVYPIVLEIP 101
+++ T + ++IR + + + +V+E+P
Sbjct: 47 LIITTERIGEKIRDAI------SSIKKVVVEVP 73
>sp|Q57671|VATF_METJA V-type ATP synthase subunit F OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=atpF PE=3 SV=1
Length = 98
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
VG++GD ++ +GF L G+ ++V+ V + +E A L ++
Sbjct: 3 VGVVGDRETAIGFRLAGL-------------TDVYEVKND---EEAVKAINELANNENIA 46
Query: 69 IVLITRLVADRIRHTLDIRERSNQVYPIVLEIP 101
++IT +A+ I+ L + +++EIP
Sbjct: 47 FIIITERIAESIKDKL------KNINKVIVEIP 73
>sp|Q2NF86|VATF_METST V-type ATP synthase subunit F OS=Methanosphaera stadtmanae (strain
DSM 3091) GN=atpF PE=3 SV=1
Length = 106
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 18/93 (19%)
Query: 9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
+ ++ D D+V GF+LGGI S V +KE E + + LV +
Sbjct: 5 IAIMADPDTVTGFMLGGI------------KSGFPVHNKE----EAKTTLKQLV-DDEYS 47
Query: 69 IVLITRLVADRIRHTLDIRERSNQVYPIVLEIP 101
I++ T + D +R + + ++ P+++E+P
Sbjct: 48 IIITTEKIGDELRDDI-TKYTGSKALPMIIEVP 79
>sp|Q8RQQ0|NPHA1_RHOSO 4-nitrophenol 2-monooxygenase, oxygenase component OS=Rhodococcus
sp. GN=nphA1 PE=1 SV=2
Length = 519
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 10/46 (21%)
Query: 26 IGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVL 71
+ H + PP +D++ PADE D +V TD G+++
Sbjct: 159 LNHAIVNPP----------IDRDKPADETADVCVHVVEETDAGLIV 194
>sp|B0K0U8|EX7L_THEPX Exodeoxyribonuclease 7 large subunit OS=Thermoanaerobacter sp.
(strain X514) GN=xseA PE=3 SV=1
Length = 401
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 44 VVDKETPADEIEDAFRTLVRRTDVGIVLITR 74
+V + ADEI +AFR L +R D+ ++++ R
Sbjct: 172 LVQGSSAADEICNAFRILNKREDIDVIILAR 202
>sp|Q04359|SPO20_YEAST Sporulation-specific protein 20 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SPO20 PE=1 SV=1
Length = 397
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 12 IGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVL 71
+G+ DSV+ LG ++ P + V S + + + DEI D R+ +R T + V
Sbjct: 128 LGETDSVIHRDLGNFANENDYPQWRKVESQYNLENVQPEEDEIVDRLRSEIRSTKLKSVK 187
Query: 72 IT 73
T
Sbjct: 188 TT 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,853,271
Number of Sequences: 539616
Number of extensions: 1716566
Number of successful extensions: 4205
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 4147
Number of HSP's gapped (non-prelim): 63
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)