Query psy963
Match_columns 128
No_of_seqs 105 out of 507
Neff 5.3
Searched_HMMs 29240
Date Sat Aug 17 00:38:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aon_B V-type sodium ATPase su 100.0 9.1E-29 3.1E-33 178.3 7.3 97 6-122 2-98 (115)
2 2qai_A V-type ATP synthase sub 100.0 1.3E-28 4.3E-33 176.9 7.3 94 7-122 1-97 (111)
3 2d00_A V-type ATP synthase sub 99.9 7.4E-29 2.5E-33 177.0 5.6 98 6-122 3-103 (109)
4 2ov6_A V-type ATP synthase sub 99.9 1.7E-27 5.7E-32 167.8 0.8 95 7-122 1-95 (101)
5 2i4r_A V-type ATP synthase sub 99.9 2.1E-26 7.3E-31 163.0 6.2 84 6-107 9-93 (102)
6 3ufx_B Succinyl-COA synthetase 76.6 17 0.00057 30.0 9.2 82 7-102 248-342 (397)
7 3lop_A Substrate binding perip 73.1 27 0.00091 26.5 9.0 83 4-100 3-106 (364)
8 3i09_A Periplasmic branched-ch 68.8 25 0.00086 26.7 8.1 81 6-100 4-102 (375)
9 4gnr_A ABC transporter substra 67.3 37 0.0013 25.5 9.8 85 3-101 4-107 (353)
10 3n0w_A ABC branched chain amin 67.3 26 0.0009 26.7 7.9 82 5-100 5-104 (379)
11 3eaf_A ABC transporter, substr 66.7 41 0.0014 25.8 9.8 81 6-98 4-104 (391)
12 2nu8_B SCS-beta, succinyl-COA 66.1 22 0.00074 29.1 7.6 82 8-103 258-352 (388)
13 3kto_A Response regulator rece 65.3 11 0.00038 24.3 4.7 85 1-101 1-88 (136)
14 3sg0_A Extracellular ligand-bi 64.9 38 0.0013 25.5 8.3 85 5-101 26-121 (386)
15 4f06_A Extracellular ligand-bi 63.2 31 0.001 26.5 7.6 83 5-101 4-104 (371)
16 3lkb_A Probable branched-chain 61.4 52 0.0018 25.1 9.3 81 4-98 5-103 (392)
17 3i45_A Twin-arginine transloca 61.4 43 0.0015 25.6 8.1 84 4-101 3-105 (387)
18 2fp4_B Succinyl-COA ligase [GD 59.3 30 0.001 28.5 7.2 60 40-102 291-358 (395)
19 4evq_A Putative ABC transporte 58.0 43 0.0015 25.2 7.5 83 4-100 14-113 (375)
20 4h08_A Putative hydrolase; GDS 55.1 49 0.0017 22.8 9.5 74 5-90 19-108 (200)
21 3td9_A Branched chain amino ac 54.4 66 0.0023 24.1 9.2 87 5-101 15-113 (366)
22 2hk9_A Shikimate dehydrogenase 53.6 23 0.00079 26.9 5.3 58 1-73 7-72 (275)
23 1nvt_A Shikimate 5'-dehydrogen 51.8 16 0.00054 28.0 4.1 58 1-73 6-71 (287)
24 3n0x_A Possible substrate bind 49.1 85 0.0029 23.9 8.8 80 6-99 4-103 (374)
25 2pju_A Propionate catabolism o 48.5 14 0.00048 28.2 3.3 56 4-75 104-163 (225)
26 3uf6_A LMO1369 protein; struct 42.4 84 0.0029 24.8 7.1 80 7-106 44-131 (291)
27 1ivn_A Thioesterase I; hydrola 39.5 42 0.0014 22.9 4.4 48 52-100 48-107 (190)
28 2kpt_A Putative secreted prote 37.8 44 0.0015 23.7 4.4 14 52-65 30-43 (148)
29 3hut_A Putative branched-chain 37.4 1.3E+02 0.0043 22.4 9.9 81 5-99 3-102 (358)
30 3h5l_A Putative branched-chain 37.1 1.1E+02 0.0037 23.6 7.0 81 4-98 12-112 (419)
31 3hp4_A GDSL-esterase; psychrot 36.0 96 0.0033 20.7 8.6 48 52-100 52-111 (185)
32 3ado_A Lambda-crystallin; L-gu 35.1 79 0.0027 25.2 5.9 27 1-27 1-31 (319)
33 3tnl_A Shikimate dehydrogenase 34.6 85 0.0029 24.9 6.0 56 3-73 34-97 (315)
34 3q2i_A Dehydrogenase; rossmann 34.3 1.6E+02 0.0054 22.7 8.4 83 1-104 8-110 (354)
35 2q5c_A NTRC family transcripti 33.9 41 0.0014 24.6 3.8 60 4-79 92-155 (196)
36 3h5i_A Response regulator/sens 33.1 30 0.001 22.3 2.7 13 5-17 4-16 (140)
37 3ipc_A ABC transporter, substr 33.0 1.5E+02 0.0051 22.0 8.7 53 42-100 46-100 (356)
38 2lqo_A Putative glutaredoxin R 32.3 54 0.0018 21.2 3.8 68 52-124 18-85 (92)
39 3lte_A Response regulator; str 31.6 39 0.0013 21.2 3.0 18 1-18 1-18 (132)
40 2rdm_A Response regulator rece 31.1 46 0.0016 20.7 3.3 12 6-17 5-16 (132)
41 3l07_A Bifunctional protein fo 30.4 79 0.0027 25.1 5.1 42 20-73 58-99 (285)
42 3p2o_A Bifunctional protein fo 29.7 78 0.0027 25.2 5.0 42 20-73 57-98 (285)
43 4eyg_A Twin-arginine transloca 29.2 1.5E+02 0.0051 22.0 6.4 82 5-100 5-103 (368)
44 1jlj_A Gephyrin; globular alph 29.1 1.5E+02 0.0051 21.6 6.2 24 50-73 62-85 (189)
45 3rst_A Signal peptide peptidas 28.8 1.4E+02 0.0048 22.3 6.1 51 50-101 30-87 (240)
46 1npy_A Hypothetical shikimate 27.6 53 0.0018 25.3 3.6 44 3-62 3-53 (271)
47 3eod_A Protein HNR; response r 27.4 1.1E+02 0.0039 18.9 5.1 46 56-102 42-88 (130)
48 2i6x_A Hydrolase, haloacid deh 27.4 36 0.0012 23.2 2.3 40 7-63 168-208 (211)
49 4a5o_A Bifunctional protein fo 27.0 99 0.0034 24.6 5.1 42 20-73 59-100 (286)
50 2wm8_A MDP-1, magnesium-depend 27.0 1.5E+02 0.0051 20.2 5.7 43 7-63 138-181 (187)
51 2qxy_A Response regulator; reg 26.1 1.3E+02 0.0043 19.0 4.9 13 6-18 4-16 (142)
52 3u26_A PF00702 domain protein; 25.4 1.1E+02 0.0038 20.8 4.7 22 7-28 173-196 (234)
53 3mil_A Isoamyl acetate-hydroly 25.2 1.7E+02 0.0058 20.1 9.7 95 6-103 3-124 (240)
54 3n6q_A YGHZ aldo-keto reductas 24.5 2.5E+02 0.0084 21.8 8.2 90 21-121 124-215 (346)
55 2qr3_A Two-component system re 24.3 1.3E+02 0.0046 18.6 4.9 11 7-17 4-14 (140)
56 4a26_A Putative C-1-tetrahydro 24.1 1.2E+02 0.0041 24.3 5.1 43 20-74 61-103 (300)
57 3snr_A Extracellular ligand-bi 24.0 2.1E+02 0.0073 20.9 6.4 84 5-100 6-100 (362)
58 2hz5_A Dynein light chain 2A, 23.7 45 0.0015 22.8 2.2 25 51-75 11-36 (106)
59 3grc_A Sensor protein, kinase; 23.6 95 0.0033 19.5 3.8 17 1-17 1-17 (140)
60 4hf7_A Putative acylhydrolase; 23.3 1.9E+02 0.0066 20.1 8.9 53 52-105 64-132 (209)
61 3hyn_A Putative signal transdu 23.1 94 0.0032 23.6 4.1 53 51-104 66-120 (189)
62 3kzx_A HAD-superfamily hydrola 23.0 1.2E+02 0.0042 20.7 4.5 22 8-29 179-201 (231)
63 1qgu_B Protein (nitrogenase mo 22.9 1.9E+02 0.0064 24.4 6.4 46 5-64 359-408 (519)
64 3eau_A Voltage-gated potassium 22.8 2.6E+02 0.0088 21.4 7.6 72 21-102 110-183 (327)
65 2pjk_A 178AA long hypothetical 22.0 1.5E+02 0.0052 21.2 5.0 24 50-73 65-88 (178)
66 2b7e_A PRE-mRNA processing pro 21.9 30 0.001 21.6 0.9 16 52-67 3-18 (59)
67 2rjn_A Response regulator rece 21.8 77 0.0026 20.5 3.1 14 5-18 6-19 (154)
68 2pr7_A Haloacid dehalogenase/e 21.8 1.2E+02 0.004 18.9 4.0 40 7-63 92-132 (137)
69 3lut_A Voltage-gated potassium 21.8 2.9E+02 0.01 21.6 7.5 88 21-120 144-235 (367)
70 3tum_A Shikimate dehydrogenase 21.4 1.8E+02 0.0062 22.3 5.6 59 1-73 1-67 (269)
71 4dvc_A Thiol:disulfide interch 20.9 1E+02 0.0035 20.7 3.7 34 21-64 143-183 (184)
72 2yxb_A Coenzyme B12-dependent 20.7 2.2E+02 0.0076 19.9 6.5 63 18-98 39-105 (161)
73 3p94_A GDSL-like lipase; serin 20.6 2E+02 0.0068 19.3 9.5 81 8-103 24-125 (204)
74 3mwd_B ATP-citrate synthase; A 20.5 3.3E+02 0.011 21.8 7.7 86 7-106 169-264 (334)
75 3cg4_A Response regulator rece 20.5 1.2E+02 0.0042 19.0 3.8 14 4-17 5-18 (142)
No 1
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=99.95 E-value=9.1e-29 Score=178.35 Aligned_cols=97 Identities=22% Similarity=0.372 Sum_probs=88.8
Q ss_pred ceEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHH
Q psy963 6 LQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLD 85 (128)
Q Consensus 6 ~~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~ 85 (128)
.+|||||||+||++||||+|+++ |+|.+ ++|++++|++++++ |||||+|||++++.+++.++
T Consensus 2 ~mKiaVIGD~Dtv~GFrLaGie~-------------~~v~~----~ee~~~~~~~l~~~-digIIlIte~ia~~i~~~i~ 63 (115)
T 3aon_B 2 TYKIGVVGDKDSVSPFRLFGFDV-------------QHGTT----KTEIRKTIDEMAKN-EYGVIYITEQCANLVPETIE 63 (115)
T ss_dssp EEEEEEESCHHHHGGGGGGTCEE-------------ECCCS----HHHHHHHHHHHHHT-TEEEEEEEHHHHTTCHHHHH
T ss_pred ceEEEEEECHHHHHHHHHcCCeE-------------EEeCC----HHHHHHHHHHHHhc-CceEEEEeHHHHHHhHHHHH
Confidence 47999999999999999999963 65534 49999999999988 99999999999999999999
Q ss_pred HhhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhc
Q psy963 86 IRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIA 122 (128)
Q Consensus 86 ~~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~ 122 (128)
+|+ ++..|+|++|||++|++++++++|.+++++.+
T Consensus 64 ~~~--~~~~P~IveIPs~~g~~~~~~~~i~~~V~~ai 98 (115)
T 3aon_B 64 RYK--GQLTPAIILIPSHQGTLGIGLEEIQNSVEKAV 98 (115)
T ss_dssp HHH--TSSSCEEEEECBTTBCCSHHHHHHHHHHHHHT
T ss_pred HHh--CCCCCEEEEECCCCCCCCccHHHHHHHHHHHh
Confidence 998 37799999999999999889999999999876
No 2
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=99.95 E-value=1.3e-28 Score=176.92 Aligned_cols=94 Identities=30% Similarity=0.526 Sum_probs=81.2
Q ss_pred eEEEEEechhhHHHHHhhCccccccCCCCccccceEEE-eCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHH--HH
Q psy963 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFV-VDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIR--HT 83 (128)
Q Consensus 7 ~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v-~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir--~~ 83 (128)
+|||||||+||++||||+|+++ +++ ++++|+.+|++++|+++++++|||||+|||.+|+.++ +.
T Consensus 1 MKIaVIGD~Dtv~GFrLaGi~~-------------~~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~~~ 67 (111)
T 2qai_A 1 MKIVVMGDSDTVVGFRLAGVHE-------------AYEYDESLESVERARNKLRELLERDDVGIILITERLAQRIGSLPE 67 (111)
T ss_dssp CEEEEEECHHHHHHHHHHTCSE-------------EEECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEHHHHHHHCSCCC
T ss_pred CEEEEEECHHHHHHHHHcCCce-------------EEEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcHHHHhhcccccc
Confidence 5899999999999999999986 566 7888888999999999999999999999999999999 66
Q ss_pred HHHhhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhc
Q psy963 84 LDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIA 122 (128)
Q Consensus 84 i~~~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~ 122 (128)
++ +|+|++|||++|+++ +++++.+++|+.+
T Consensus 68 i~--------~P~IleIPs~~g~~~-~~d~i~~~V~~ai 97 (111)
T 2qai_A 68 VK--------FPIILQIPDKFGSIY-GEDILRDVVRRAI 97 (111)
T ss_dssp CS--------SSEEEEECTTC-------CTHHHHHHHHC
T ss_pred cC--------CCEEEEECCCCCCCc-hHHHHHHHHHHHh
Confidence 65 699999999999998 8999999999876
No 3
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=99.95 E-value=7.4e-29 Score=177.02 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=90.0
Q ss_pred ceEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHH
Q psy963 6 LQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLD 85 (128)
Q Consensus 6 ~~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~ 85 (128)
.+|||||||+||++||||+|+++ |+|.+ ++|++++|+++++++|||||+|||++++.+++.++
T Consensus 3 ~mkiaVIgD~dtv~GFrLaGi~~-------------~~v~~----~ee~~~~~~~l~~~~digIIlIte~~a~~i~~~i~ 65 (109)
T 2d00_A 3 PVRMAVIADPETAQGFRLAGLEG-------------YGASS----AEEAQSLLETLVERGGYALVAVDEALLPDPERAVE 65 (109)
T ss_dssp CCCEEEEECHHHHHHHHHTTSEE-------------EECSS----HHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHH
T ss_pred ccEEEEEeCHHHHHHHHHcCCeE-------------EEeCC----HHHHHHHHHHHhhCCCeEEEEEeHHHHHhhHHHHH
Confidence 47999999999999999999964 66644 49999999999999999999999999999999999
Q ss_pred HhhhCCCcccEEEEcCCCC---CCCCCCCchHHHHHHhhc
Q psy963 86 IRERSNQVYPIVLEIPSAL---DAFHYTITDEDKQCRNIA 122 (128)
Q Consensus 86 ~~~~~~~~~P~IveIPs~~---g~~~~~~~~i~k~~~~~~ 122 (128)
+|+++ +..|+|++|||++ |++ .+++++.+++|+.+
T Consensus 66 ~~~~~-~~~P~Il~IPs~~~~~g~~-~~~~~i~~~V~~ai 103 (109)
T 2d00_A 66 RLMRG-RDLPVLLPIAGLKEAFQGH-DVEGYMRELVRKTI 103 (109)
T ss_dssp HHTTC-CCCCEEEEESCGGGGGSSS-CHHHHHHHHHHHHH
T ss_pred HHHhC-CCCeEEEEECCCcccCCCc-chHHHHHHHHHHHh
Confidence 99865 7899999999999 998 89999999999876
No 4
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=99.93 E-value=1.7e-27 Score=167.76 Aligned_cols=95 Identities=21% Similarity=0.279 Sum_probs=81.7
Q ss_pred eEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHH
Q psy963 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDI 86 (128)
Q Consensus 7 ~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~ 86 (128)
+|||||||+||++||||+|++++ |.|.++ +|++++|+++++++|||||+|||++++.+++.+++
T Consensus 1 MkiaVIGD~dtv~GFrLaGi~~v------------~~v~~~----ee~~~~~~~l~~~~digIIlite~~a~~i~~~i~~ 64 (101)
T 2ov6_A 1 MELAVIGKSEFVTGFRLAGISKV------------YETPDI----PATESAVRSVLEDKSVGILVMHNDDIGNLPEVLRK 64 (101)
T ss_dssp CCEEEEECHHHHHHHHHHTCCEE------------EECCST----TTHHHHHHHHHHHTSSSEEEEEHHHHTTCTTTTHH
T ss_pred CEEEEEECHHHHHHHHHcCCCce------------EecCCH----HHHHHHHHHHhhCCCeEEEEEcHHHHHHhHHHHHH
Confidence 48999999999999999999973 656554 89999999999999999999999999999999954
Q ss_pred hhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhc
Q psy963 87 RERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIA 122 (128)
Q Consensus 87 ~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~ 122 (128)
+..+ +..|+|++|||++ ++.+++.+++++.+
T Consensus 65 ~~~~-~~~P~Iv~IP~~~----~~~~~i~~~v~~ai 95 (101)
T 2ov6_A 65 NLNE-SVQPTVVALGGSG----SGSTSLREKIKQAV 95 (101)
T ss_dssp HHHH-HCCSCEEEECTTS----SCCCCCCCCCSGGG
T ss_pred HHhC-CCCcEEEEECCCC----CChhHHHHHHHHHh
Confidence 4433 6899999999999 23488888888764
No 5
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=99.93 E-value=2.1e-26 Score=162.98 Aligned_cols=84 Identities=24% Similarity=0.490 Sum_probs=71.0
Q ss_pred ceEEEEEechhhHHHHHhhCccccccCCCCccccceEE-EeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHH
Q psy963 6 LQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVF-VVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTL 84 (128)
Q Consensus 6 ~~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~-v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i 84 (128)
..-+|||||+||++||||+||++ +. +. +++|++++|+++++++|||||+|||.+|+.+++.+
T Consensus 9 ~~~~aVIGD~Dtv~GFrLaGi~~-------------~~~~~----~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~i 71 (102)
T 2i4r_A 9 SHMLAVVGDPDFTIGFMLAGISD-------------IYEVT----SDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVL 71 (102)
T ss_dssp CCEEEEEECHHHHHHHHHTTCCC-------------EEECC----SHHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHH
T ss_pred ceeEEEEcCHHHHHHHHHcCCCc-------------ccCCC----CHHHHHHHHHHHhhCCCeEEEEEeHHHHHHHHHHH
Confidence 46799999999999999999996 34 43 34999999999999999999999999999999999
Q ss_pred HHhhhCCCcccEEEEcCCCCCCC
Q psy963 85 DIRERSNQVYPIVLEIPSALDAF 107 (128)
Q Consensus 85 ~~~~~~~~~~P~IveIPs~~g~~ 107 (128)
++|+.+ +.+|+|++|||+.|+.
T Consensus 72 ~~~~~~-~~~P~IieIPs~~g~~ 93 (102)
T 2i4r_A 72 RREIDE-KVEPTFVSVGGTGGVE 93 (102)
T ss_dssp HTTTTT-CCSSEEEEEC------
T ss_pred HHHHhC-CCccEEEEECCCCCCc
Confidence 999965 6999999999999983
No 6
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=76.55 E-value=17 Score=30.00 Aligned_cols=82 Identities=22% Similarity=0.282 Sum_probs=54.8
Q ss_pred eEEEEEechhh-----HHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEE------e--
Q psy963 7 QLVGLIGDEDS-----VVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLI------T-- 73 (128)
Q Consensus 7 ~kIaVIgD~dt-----v~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiI------t-- 73 (128)
-+|++|++..- .--....|.+- .||.-.....+.+.+.++|+.+++++++-.|++ +
T Consensus 248 g~I~ii~Ng~Gl~~~t~D~i~~~G~~~-----------aN~lD~gG~a~~e~~~~al~~~l~d~~v~~ilv~i~ggi~~~ 316 (397)
T 3ufx_B 248 GNIGIIGNGAGLVMYTLDLVNRVGGKP-----------ANFLDIGGGAKADVVYNALKVVLKDPDVKGVFINIFGGITRA 316 (397)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTTCCB-----------SEEEECCSCCCHHHHHHHHHHHHTCTTCCEEEEEEEEEEEES
T ss_pred CcEEEEecCccHHHHHHHHHHHcCCCc-----------CCcEecCCCCCHHHHHHHHHHHHcCCCCCEEEEECCCCCCCH
Confidence 46899988421 11233456542 478866666778999999999999888755554 2
Q ss_pred hHHHHHHHHHHHHhhhCCCcccEEEEcCC
Q psy963 74 RLVADRIRHTLDIRERSNQVYPIVLEIPS 102 (128)
Q Consensus 74 e~~a~~ir~~i~~~~~~~~~~P~IveIPs 102 (128)
+.+|+.|-+.+.+++ ...|+|+-.-+
T Consensus 317 ~~vA~~i~~a~~~~~---~~kPvvv~~~G 342 (397)
T 3ufx_B 317 DEVAKGVIRALEEGL---LTKPVVMRVAG 342 (397)
T ss_dssp HHHHHHHHHHHTTTC---CCSCEEEEEEE
T ss_pred HHHHHHHHHHHHhhC---CCCcEEEEccC
Confidence 457777766555543 35799887765
No 7
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=73.10 E-value=27 Score=26.47 Aligned_cols=83 Identities=16% Similarity=0.045 Sum_probs=51.3
Q ss_pred ccceEEEEEech---------hhHHHHHhh--------CccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCC
Q psy963 4 EVLQLVGLIGDE---------DSVVGFLLG--------GIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66 (128)
Q Consensus 4 ~~~~kIaVIgD~---------dtv~GFrLa--------Gi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~d 66 (128)
...-+||++... +...|++++ ||.|. + -.+.+.|...+++...+.+++++.++.
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~----~-----i~l~~~D~~~~~~~~~~~~~~l~~~~~ 73 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGE----T-----IRLVARDDEQKIEQTVRNVRDMARVDN 73 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTB----C-----EEEEEEECTTCHHHHHHHHHHHHHHSC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCe----E-----EEEEEeCCCCCHHHHHHHHHHHHhhcC
Confidence 455789998873 456677765 34331 0 124456666677888899999997666
Q ss_pred eEEEEE--ehHHHHHHHH--HHHHhhhCCCcccEEEEc
Q psy963 67 VGIVLI--TRLVADRIRH--TLDIRERSNQVYPIVLEI 100 (128)
Q Consensus 67 igIIiI--te~~a~~ir~--~i~~~~~~~~~~P~IveI 100 (128)
+-.|+. +......+.+ .+.+. ..|+|..-
T Consensus 74 v~~iig~~~s~~~~~~~~~~~~~~~-----~iP~v~~~ 106 (364)
T 3lop_A 74 PVALLTVVGTANVEALMREGVLAEA-----RLPLVGPA 106 (364)
T ss_dssp EEEEECCCCHHHHHHHHHTTHHHHH-----TCCEESCS
T ss_pred cEEEEecCCCHHHHhhCchhhHHhc-----CCcEEEcc
Confidence 655553 4455555655 55553 36877544
No 8
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=68.83 E-value=25 Score=26.72 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=51.9
Q ss_pred ceEEEEEec----------hhhHHHHHhh------CccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEE
Q psy963 6 LQLVGLIGD----------EDSVVGFLLG------GIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGI 69 (128)
Q Consensus 6 ~~kIaVIgD----------~dtv~GFrLa------Gi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digI 69 (128)
.-+||++.. .+...|++++ |+.|. .-.+.+.|...+++...+.+++|+.++.+-.
T Consensus 4 ~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~ggi~G~---------~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~ 74 (375)
T 3i09_A 4 SVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGGKVNGK---------PIEVVYADHQNKADIAASKAREWMDRGGLDL 74 (375)
T ss_dssp SEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSEETTE---------EEEEEEEECTTCHHHHHHHHHHHHHHSCEEE
T ss_pred CeEEEEEeCCCcccccccCHHHHHHHHHHHHHhCCCCCCe---------EEEEEEecCCCCHHHHHHHHHHHHhhCCCEE
Confidence 457888864 3466788776 44331 0124566777778999999999997566665
Q ss_pred EEE--ehHHHHHHHHHHHHhhhCCCcccEEEEc
Q psy963 70 VLI--TRLVADRIRHTLDIRERSNQVYPIVLEI 100 (128)
Q Consensus 70 IiI--te~~a~~ir~~i~~~~~~~~~~P~IveI 100 (128)
|+- +......+.+.+.++ ..|+|..-
T Consensus 75 iiG~~~s~~~~a~~~~~~~~-----~ip~i~~~ 102 (375)
T 3i09_A 75 LVGGTNSATALSMNQVAAEK-----KKVYINIG 102 (375)
T ss_dssp EEECSCHHHHHHHHHHHHHH-----TCEEEECS
T ss_pred EECCCCcHHHHHHHHHHHHc-----CceEEEeC
Confidence 553 345556666666653 36888763
No 9
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=67.29 E-value=37 Score=25.50 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=55.4
Q ss_pred cccceEEEEEec---------hhhHHHHHhh--------CccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCC
Q psy963 3 EEVLQLVGLIGD---------EDSVVGFLLG--------GIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRT 65 (128)
Q Consensus 3 ~~~~~kIaVIgD---------~dtv~GFrLa--------Gi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~ 65 (128)
+++.=||+++.+ .+...|++|+ ||.|. + =.+++.|...+++.+.++.++|+.++
T Consensus 4 ~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr----~-----ielv~~D~~~~p~~a~~~a~~li~~~ 74 (353)
T 4gnr_A 4 EEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGK----Q-----IEVVDKDNKSETAEAASVTTNLVTQS 74 (353)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTB----E-----EEEEEEECTTCHHHHHHHHHHHHHTS
T ss_pred CCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCe----E-----EEEEEecCCCCHHHHHHHHHHHHhhC
Confidence 455678998876 3567788886 66552 0 12456677788899999999999877
Q ss_pred CeEEEEE--ehHHHHHHHHHHHHhhhCCCcccEEEEcC
Q psy963 66 DVGIVLI--TRLVADRIRHTLDIRERSNQVYPIVLEIP 101 (128)
Q Consensus 66 digIIiI--te~~a~~ir~~i~~~~~~~~~~P~IveIP 101 (128)
.+-+|+- +......+....++ ...|.|.+-.
T Consensus 75 ~v~~i~g~~~s~~~~a~~~~~~~-----~~vp~i~~~~ 107 (353)
T 4gnr_A 75 KVSAVVGPATSGATAAAVANATK-----AGVPLISPSA 107 (353)
T ss_dssp CCSEEECCCSHHHHHHHHHHHHH-----TTCCEEESSC
T ss_pred CceEEeccccCcccceehhhhhc-----cCcceEeecc
Confidence 6555543 34555556555555 4468776543
No 10
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=67.26 E-value=26 Score=26.75 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=52.4
Q ss_pred cceEEEEEec----------hhhHHHHHhh------CccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeE
Q psy963 5 VLQLVGLIGD----------EDSVVGFLLG------GIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68 (128)
Q Consensus 5 ~~~kIaVIgD----------~dtv~GFrLa------Gi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~dig 68 (128)
..-+||++.. .+...|++|+ |+.|. .-.+.+.|...+++...+..++|+.++.+-
T Consensus 5 ~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~ggi~G~---------~i~l~~~D~~~~~~~a~~~~~~li~~~~v~ 75 (379)
T 3n0w_A 5 GQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGKALGQ---------PVKLVSADYQMKTDVALSIAREWFDRDGVD 75 (379)
T ss_dssp -CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTEETTE---------ECEEEEEECTTCHHHHHHHHHHHHHHSCCC
T ss_pred CcEEEEEEeCCccccccccCHHHHHHHHHHHHHhcCCCCCe---------EEEEEEeCCCCCHHHHHHHHHHHHHhCCce
Confidence 4568888875 3456788876 33331 013556677778899999999999755555
Q ss_pred EEE--EehHHHHHHHHHHHHhhhCCCcccEEEEc
Q psy963 69 IVL--ITRLVADRIRHTLDIRERSNQVYPIVLEI 100 (128)
Q Consensus 69 IIi--Ite~~a~~ir~~i~~~~~~~~~~P~IveI 100 (128)
.|+ .+......+.+.+.+++ .|.|..-
T Consensus 76 ~iiG~~~s~~~~a~~~~~~~~~-----ip~i~~~ 104 (379)
T 3n0w_A 76 AIFDVVNSGTALAINNLVKDKK-----KLAFITA 104 (379)
T ss_dssp EEEECCCHHHHHHHHHHHHHHT-----CEEEECS
T ss_pred EEEcCCCcHHHHHHHHHHHHcC-----ceEEEcC
Confidence 554 44556666666666533 6888764
No 11
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=66.66 E-value=41 Score=25.78 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=50.3
Q ss_pred ceEEEEEec---------hhhHHHHHhh--------Cc--cccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCC
Q psy963 6 LQLVGLIGD---------EDSVVGFLLG--------GI--GHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66 (128)
Q Consensus 6 ~~kIaVIgD---------~dtv~GFrLa--------Gi--~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~d 66 (128)
.-+||++.. .+...|++++ |+ .|... + =.+.+.|...+++...+.+++|+.++.
T Consensus 4 ~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~--~-----l~l~~~D~~~~~~~a~~~~~~li~~~~ 76 (391)
T 3eaf_A 4 TINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRV--N-----INYIKRDYAYNPTTAEEYYREFRDRYG 76 (391)
T ss_dssp EEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEE--E-----EEEEEEECTTCHHHHHHHHHHHHHTTC
T ss_pred cEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEE--E-----EEEEEeCCCCCHHHHHHHHHHHHhhcC
Confidence 468999875 3567788876 34 33100 0 135566777778899999999995444
Q ss_pred e-EEEEEehHHHHHHHHHHHHhhhCCCcccEEE
Q psy963 67 V-GIVLITRLVADRIRHTLDIRERSNQVYPIVL 98 (128)
Q Consensus 67 i-gIIiIte~~a~~ir~~i~~~~~~~~~~P~Iv 98 (128)
+ +||-.+......+...+.+. ..|+|.
T Consensus 77 V~~iiG~~s~~~~a~~~~~~~~-----~iP~i~ 104 (391)
T 3eaf_A 77 VIAIIGWGTADTEKLSDQVDTD-----KITYIS 104 (391)
T ss_dssp CSEEEECCHHHHHHHHHHHHHH-----TCEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHhhc-----CCeEEe
Confidence 4 55555555555555555553 368776
No 12
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=66.15 E-value=22 Score=29.14 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=56.4
Q ss_pred EEEEEechh-----hHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEe--------h
Q psy963 8 LVGLIGDED-----SVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLIT--------R 74 (128)
Q Consensus 8 kIaVIgD~d-----tv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIt--------e 74 (128)
+|++|++-. |.=-..+.|.+- .||.=.....+.+.+.++|+.+++++++-.||++ +
T Consensus 258 ~Ig~~~nGaGl~m~t~D~i~~~Gg~~-----------aNflD~gG~a~~~~~~~~~~~il~d~~v~~ilvni~ggi~~~~ 326 (388)
T 2nu8_B 258 NIGCMVNGAGLAMGTMDIVKLHGGEP-----------ANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCD 326 (388)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTCCB-----------CEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHH
T ss_pred EEEEEeCCCchhhhhhHHHHHcCCCc-----------CceeEecCCCCHHHHHHHHHHHhcCCCCCEEEEEecCCcCCch
Confidence 577777632 222234555432 4788556667789999999999988888777773 4
Q ss_pred HHHHHHHHHHHHhhhCCCcccEEEEcCCC
Q psy963 75 LVADRIRHTLDIRERSNQVYPIVLEIPSA 103 (128)
Q Consensus 75 ~~a~~ir~~i~~~~~~~~~~P~IveIPs~ 103 (128)
.+|+.|-+.+.++. ...|+|+-+.+.
T Consensus 327 ~vA~gii~a~~~~~---~~~pivvrl~G~ 352 (388)
T 2nu8_B 327 LIADGIIGAVAEVG---VNVPVVVRLEGN 352 (388)
T ss_dssp HHHHHHHHHHHHHT---CCSCEEEEEEST
T ss_pred HHHHHHHHHHHhcC---CCCeEEEEeCCC
Confidence 67887777776654 567999977543
No 13
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=65.34 E-value=11 Score=24.31 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=37.6
Q ss_pred CccccceEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHH--
Q psy963 1 MAEEVLQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVAD-- 78 (128)
Q Consensus 1 ~~~~~~~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~-- 78 (128)
|.-....+|.++.|.....-..-.-+... .|.|... ....+++. ++....+.+|++.-.+.+
T Consensus 1 M~~~~~~~ilivdd~~~~~~~l~~~L~~~-----------g~~v~~~----~~~~~a~~-~l~~~~~dlvi~D~~l~~~~ 64 (136)
T 3kto_A 1 MSLNHHPIIYLVDHQKDARAALSKLLSPL-----------DVTIQCF----ASAESFMR-QQISDDAIGMIIEAHLEDKK 64 (136)
T ss_dssp ------CEEEEECSCHHHHHHHHHHHTTS-----------SSEEEEE----SSHHHHTT-SCCCTTEEEEEEETTGGGBT
T ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHHC-----------CcEEEEe----CCHHHHHH-HHhccCCCEEEEeCcCCCCC
Confidence 44345578999988554433222212110 1222211 12334444 344567889999865543
Q ss_pred -HHHHHHHHhhhCCCcccEEEEcC
Q psy963 79 -RIRHTLDIRERSNQVYPIVLEIP 101 (128)
Q Consensus 79 -~ir~~i~~~~~~~~~~P~IveIP 101 (128)
.--+.+..++......|+|+--.
T Consensus 65 ~~g~~~~~~l~~~~~~~~ii~~s~ 88 (136)
T 3kto_A 65 DSGIELLETLVKRGFHLPTIVMAS 88 (136)
T ss_dssp THHHHHHHHHHHTTCCCCEEEEES
T ss_pred ccHHHHHHHHHhCCCCCCEEEEEc
Confidence 11233444443224567665543
No 14
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=64.88 E-value=38 Score=25.48 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=51.1
Q ss_pred cceEEEEEech---------hhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEE--e
Q psy963 5 VLQLVGLIGDE---------DSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLI--T 73 (128)
Q Consensus 5 ~~~kIaVIgD~---------dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiI--t 73 (128)
..-+||++... +...|++++ ++.+ +.+ .-.+.+.|...+++...+.+++++.++.+-.|+. +
T Consensus 26 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a-~~~i--~G~----~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 98 (386)
T 3sg0_A 26 AEIKIGITMSASGPGAALGQPQSKTVAAL-PKEI--GGE----KVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSL 98 (386)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHGGGS-CSEE--TTE----EEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCSS
T ss_pred CceEEEEEeccCCchhhhcHHHHHHHHHH-HHHc--CCE----EEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECCCC
Confidence 45789998762 466677765 3322 000 0123455666677888899999997755655553 4
Q ss_pred hHHHHHHHHHHHHhhhCCCcccEEEEcC
Q psy963 74 RLVADRIRHTLDIRERSNQVYPIVLEIP 101 (128)
Q Consensus 74 e~~a~~ir~~i~~~~~~~~~~P~IveIP 101 (128)
......+.+.+.+ ...|+|..-.
T Consensus 99 s~~~~~~~~~~~~-----~~ip~v~~~~ 121 (386)
T 3sg0_A 99 TPVSLPLIDIAAE-----AKTPLMTMAA 121 (386)
T ss_dssp HHHHHHHHHHHHH-----TTCCEEECCC
T ss_pred chhHHHHHHHHHh-----cCCeEEEecC
Confidence 4455555555555 4578887543
No 15
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=63.25 E-value=31 Score=26.55 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=54.0
Q ss_pred cceEEEEEec---------hhhHHHHHhh------CccccccCCCCccccceEEEeCCC-CCHHHHHHHHHHHhcCCCeE
Q psy963 5 VLQLVGLIGD---------EDSVVGFLLG------GIGHQTITPPLQTVTSNVFVVDKE-TPADEIEDAFRTLVRRTDVG 68 (128)
Q Consensus 5 ~~~kIaVIgD---------~dtv~GFrLa------Gi~~~~~~~~~~~~~~~~~v~~~~-t~~eei~~~~~~l~~~~dig 68 (128)
..=||+++.+ .....|++|+ |+.|. + =.+++.|.. .+++....+.++|+.++.+-
T Consensus 4 d~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~nggi~G~----~-----ielv~~D~~~~~p~~a~~~a~~Li~~d~V~ 74 (371)
T 4f06_A 4 DTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNKVAGH----T-----VEFVYRDEVSPNPAQSKALAQELIVKEKVQ 74 (371)
T ss_dssp CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCSEETTE----E-----EEEEEEECCSSCHHHHHHHHHHHHHTSCCS
T ss_pred CcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCCCCCCE----E-----EEEEEEcCCCCCHHHHHHHHHHHHhcCCCE
Confidence 3467888865 4567788875 34431 0 113455544 36788999999999888877
Q ss_pred EEE--EehHHHHHHHHHHHHhhhCCCcccEEEEcC
Q psy963 69 IVL--ITRLVADRIRHTLDIRERSNQVYPIVLEIP 101 (128)
Q Consensus 69 IIi--Ite~~a~~ir~~i~~~~~~~~~~P~IveIP 101 (128)
.|+ .+...+..+.+.+++.+ .|.|.+-.
T Consensus 75 aiiG~~~S~~~~a~~~~~~~~~-----vp~i~~~a 104 (371)
T 4f06_A 75 YLAGLYFTPNAMAVAPLLQEAK-----VPMVVMNA 104 (371)
T ss_dssp EEEECCSHHHHHHHGGGHHHHT-----CCEEESSC
T ss_pred EEEecccccchHHHHHHHHhhc-----CCcccccc
Confidence 666 45566677777666644 68776543
No 16
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=61.42 E-value=52 Score=25.10 Aligned_cols=81 Identities=10% Similarity=-0.047 Sum_probs=51.7
Q ss_pred ccceEEEEEec---------hhhHHHHHhh--------CccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCC
Q psy963 4 EVLQLVGLIGD---------EDSVVGFLLG--------GIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66 (128)
Q Consensus 4 ~~~~kIaVIgD---------~dtv~GFrLa--------Gi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~d 66 (128)
...-+||++.. .+...|++++ |+.|.. -.+.+.|...+++...+.+++|+.++.
T Consensus 5 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~---------i~l~~~D~~~~~~~~~~~~~~li~~~~ 75 (392)
T 3lkb_A 5 QQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVV---------FNCVVRDDQYNNANTQRFFEEAVDRFK 75 (392)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEE---------EEEEEEECTTCHHHHHHHHHHHHHTTC
T ss_pred CCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeE---------eEEEEecCCCCHHHHHHHHHHHHhhcC
Confidence 34578999986 2567788875 444320 124455666678889999999997644
Q ss_pred -eEEEEEehHHHHHHHHHHHHhhhCCCcccEEE
Q psy963 67 -VGIVLITRLVADRIRHTLDIRERSNQVYPIVL 98 (128)
Q Consensus 67 -igIIiIte~~a~~ir~~i~~~~~~~~~~P~Iv 98 (128)
.+||..+......+.+.+.+ ...|+|.
T Consensus 76 V~~iig~~s~~~~~~~~~~~~-----~~iP~i~ 103 (392)
T 3lkb_A 76 IPVFLSYATGANLQLKPLIQE-----LRIPTIP 103 (392)
T ss_dssp CSCEEECCHHHHHHHHHHHHH-----HTCCEEE
T ss_pred cEEEEeCCcHHHHHHHHHHHh-----CCceEEe
Confidence 45665555555555555555 3468876
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=61.37 E-value=43 Score=25.58 Aligned_cols=84 Identities=18% Similarity=0.115 Sum_probs=52.3
Q ss_pred ccceEEEEEech--------hhHHHHHhh--------Cccc-cccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCC
Q psy963 4 EVLQLVGLIGDE--------DSVVGFLLG--------GIGH-QTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD 66 (128)
Q Consensus 4 ~~~~kIaVIgD~--------dtv~GFrLa--------Gi~~-~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~d 66 (128)
...-+|+++... +...|++++ |+.| . + -.+.+.|...+++...+.+++|+.++.
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~----~-----i~l~~~D~~~~~~~~~~~~~~li~~~~ 73 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGR----P-----LEVISRDDGGDPGKAVTAAQELLTRHG 73 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTB----C-----EEEEEEECTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCc----c-----eEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 456789998652 356677775 3332 1 0 125566767778899999999997555
Q ss_pred eEEEEE--ehHHHHHHHHHHHHhhhCCCcccEEEEcC
Q psy963 67 VGIVLI--TRLVADRIRHTLDIRERSNQVYPIVLEIP 101 (128)
Q Consensus 67 igIIiI--te~~a~~ir~~i~~~~~~~~~~P~IveIP 101 (128)
+-.|+- +...+..+.+.+.+. ..|.|..-+
T Consensus 74 v~aiiG~~~s~~~~a~~~~~~~~-----~ip~i~~~~ 105 (387)
T 3i45_A 74 VHALAGTFLSHVGLAVSDFARQR-----KVLFMASEP 105 (387)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHH-----TCCEEECSC
T ss_pred CEEEECCcchHHHHHHHHHHHHc-----CceEEecCC
Confidence 544443 344555566655553 368887543
No 18
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=59.25 E-value=30 Score=28.47 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=45.7
Q ss_pred ceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEe--------hHHHHHHHHHHHHhhhCCCcccEEEEcCC
Q psy963 40 SNVFVVDKETPADEIEDAFRTLVRRTDVGIVLIT--------RLVADRIRHTLDIRERSNQVYPIVLEIPS 102 (128)
Q Consensus 40 ~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIt--------e~~a~~ir~~i~~~~~~~~~~P~IveIPs 102 (128)
.||.=.....+.+.+..+|+-+++++++-.||++ +.+|+.|-+.+.++. ...|+|+-+-+
T Consensus 291 aNflDvgG~a~~e~~~~al~~il~d~~v~~ilvni~ggi~~~d~vA~gii~a~~~~~---~~~Pivvrl~G 358 (395)
T 2fp4_B 291 ANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELE---LKVPLVVRLEG 358 (395)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHHHHHHHHHHHT---CCSCEEEEEEE
T ss_pred CCcEEECCCCCHHHHHHHHHHHhCCCCCCEEEEEecCCccCcHHHHHHHHHHHHhcC---CCCeEEEEcCC
Confidence 4788556667789999999999998988888763 457877777777664 55799987644
No 19
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=58.01 E-value=43 Score=25.20 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=50.0
Q ss_pred ccceEEEEEec---------hhhHHHHHhh------CccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeE
Q psy963 4 EVLQLVGLIGD---------EDSVVGFLLG------GIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68 (128)
Q Consensus 4 ~~~~kIaVIgD---------~dtv~GFrLa------Gi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~dig 68 (128)
...-+||++.. .+...|++++ |+.|. .-.+.+.|...+++...+.+++++.++.+.
T Consensus 14 ~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~---------~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~ 84 (375)
T 4evq_A 14 AGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGR---------SISFVKVDDESAPPKATELTTKLIQSEKAD 84 (375)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTE---------EEEEEEEECTTCHHHHHHHHHCCCCCSCCS
T ss_pred CCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCE---------EEEEEEecCCCCHHHHHHHHHHHHhcCCce
Confidence 45678999865 3567778775 22221 012445566667788888999999765554
Q ss_pred EEEE--ehHHHHHHHHHHHHhhhCCCcccEEEEc
Q psy963 69 IVLI--TRLVADRIRHTLDIRERSNQVYPIVLEI 100 (128)
Q Consensus 69 IIiI--te~~a~~ir~~i~~~~~~~~~~P~IveI 100 (128)
.|+. +......+.+.+.++ ..|+|..-
T Consensus 85 ~iig~~~s~~~~~~~~~~~~~-----~iP~v~~~ 113 (375)
T 4evq_A 85 VLIGTVHSGVAMAMVKIARED-----GIPTIVPN 113 (375)
T ss_dssp EEEECSSHHHHHHHHHHHHHH-----CCCEEESS
T ss_pred EEEcCCccHHHHHHHHHHHHc-----CceEEecC
Confidence 4443 344555555555553 46887653
No 20
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=55.05 E-value=49 Score=22.83 Aligned_cols=74 Identities=14% Similarity=0.176 Sum_probs=40.4
Q ss_pred cceEEEEEechhhHHHH------HhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEe-----
Q psy963 5 VLQLVGLIGDEDSVVGF------LLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLIT----- 73 (128)
Q Consensus 5 ~~~kIaVIgD~dtv~GF------rLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIt----- 73 (128)
...+|.++||+=| .|+ +|.+...+ .+... ...+....+.+.+.+.+.....-+|+|.
T Consensus 19 ~~prVl~iGDSit-~G~~~~l~~~l~~~~~v----------~~~~~-~~~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND 86 (200)
T 4h08_A 19 DLPHVLLIGNSIT-RGYYGKVEAALKEKAYV----------GRLSN-SKSVGDPALIEELAVVLKNTKFDVIHFNNGLHG 86 (200)
T ss_dssp SSCEEEEEESHHH-HHHHHHHHHHTTTTCEE----------EEEEE-SCCTTCHHHHHHHHHHHHHSCCSEEEECCCSSC
T ss_pred CCCeEEEEchhHH-hhhHHHHHHHhccCCeE----------EEEec-cCCccHHHHHHHHHHHHhcCCCCeEEEEeeeCC
Confidence 4468999999855 455 23332211 12222 2233335666667766643334445542
Q ss_pred -----hHHHHHHHHHHHHhhhC
Q psy963 74 -----RLVADRIRHTLDIRERS 90 (128)
Q Consensus 74 -----e~~a~~ir~~i~~~~~~ 90 (128)
+...+.++..++.++..
T Consensus 87 ~~~~~~~~~~~l~~ii~~l~~~ 108 (200)
T 4h08_A 87 FDYTEEEYDKSFPKLIKIIRKY 108 (200)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhh
Confidence 33566677788887754
No 21
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=54.41 E-value=66 Score=24.15 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=51.0
Q ss_pred cceEEEEEec---------hhhHHHHHhhCccccccCCCCcccc-ceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEE--E
Q psy963 5 VLQLVGLIGD---------EDSVVGFLLGGIGHQTITPPLQTVT-SNVFVVDKETPADEIEDAFRTLVRRTDVGIVL--I 72 (128)
Q Consensus 5 ~~~kIaVIgD---------~dtv~GFrLaGi~~~~~~~~~~~~~-~~~~v~~~~t~~eei~~~~~~l~~~~digIIi--I 72 (128)
...+||++.. .+...|++++ ++.++. +.|. -.+.+.|...+++...+.+++++.++.+-.|+ .
T Consensus 15 ~~~~iG~~~plsG~~a~~g~~~~~g~~~a-~~~in~----i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~ 89 (366)
T 3td9_A 15 KVVKIAVILPMTGGISAFGRMVWEGIQIA-HEEKPT----VLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEV 89 (366)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHH-HHHCCE----ETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred ceEEEEEEECCcCcchhcCHHHHHHHHHH-HHHhhh----cCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccC
Confidence 4578888876 3556677765 111100 0000 12455666677888999999999776454444 4
Q ss_pred ehHHHHHHHHHHHHhhhCCCcccEEEEcC
Q psy963 73 TRLVADRIRHTLDIRERSNQVYPIVLEIP 101 (128)
Q Consensus 73 te~~a~~ir~~i~~~~~~~~~~P~IveIP 101 (128)
+......+.+.+.+ ...|+|..-.
T Consensus 90 ~s~~~~~~~~~~~~-----~~iP~i~~~~ 113 (366)
T 3td9_A 90 ASAHSLAIAPIAEE-----NKVPMVTPAS 113 (366)
T ss_dssp SHHHHHHHHHHHHH-----TTCCEEESSC
T ss_pred CchhHHHHHHHHHh-----CCCeEEecCC
Confidence 45556666665555 4478887654
No 22
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=53.64 E-value=23 Score=26.94 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=40.7
Q ss_pred CccccceEEEEEechhh--------HHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEE
Q psy963 1 MAEEVLQLVGLIGDEDS--------VVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLI 72 (128)
Q Consensus 1 ~~~~~~~kIaVIgD~dt--------v~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiI 72 (128)
|-+..+++.++||++-. -..|+..|++.. |...+ .+++++.++++.+.. .++.=+.+
T Consensus 7 ~~~~~t~~~~liG~pi~hs~sp~~h~~~~~~~g~~~~------------y~~~~--~~~~~l~~~i~~l~~-~~~~G~nv 71 (275)
T 2hk9_A 7 MINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAV------------YLAFE--INPEELKKAFEGFKA-LKVKGINV 71 (275)
T ss_dssp CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCSEE------------EEEEE--CCGGGHHHHHHHHHH-HTCCEEEE
T ss_pred cccCCceEEEEECCCcccccCHHHHHHHHHHcCCCcE------------EEEEE--CCHHHHHHHHHHHHh-CCCCEEEE
Confidence 56778889999999632 258999999863 65443 345888888887753 45555566
Q ss_pred e
Q psy963 73 T 73 (128)
Q Consensus 73 t 73 (128)
|
T Consensus 72 t 72 (275)
T 2hk9_A 72 T 72 (275)
T ss_dssp C
T ss_pred C
Confidence 6
No 23
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=51.75 E-value=16 Score=28.02 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=39.5
Q ss_pred CccccceEEEEEech--hh------HHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEE
Q psy963 1 MAEEVLQLVGLIGDE--DS------VVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLI 72 (128)
Q Consensus 1 ~~~~~~~kIaVIgD~--dt------v~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiI 72 (128)
|.+...++.+|||++ .+ -..|+..|++.. |...+ ++++++.++++.+.. .++.=+.+
T Consensus 6 m~~~~~~~~~viG~pi~hS~Sp~~h~~~~~~~gi~~~------------y~~~~--~~~~~l~~~i~~l~~-~~~~G~nV 70 (287)
T 1nvt_A 6 MINAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYV------------YVAFD--VLPENLKYVIDGAKA-LGIVGFNV 70 (287)
T ss_dssp CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEE------------EEEEE--CCGGGGGGHHHHHHH-HTCCEEEE
T ss_pred hhcCCccEEEEECCCcccccCHHHHHHHHHHcCCCcE------------EEEEE--cCHHHHHHHHHHHHh-CCCCEEEE
Confidence 445666789999995 44 468899999863 66543 345888888887753 35544555
Q ss_pred e
Q psy963 73 T 73 (128)
Q Consensus 73 t 73 (128)
|
T Consensus 71 t 71 (287)
T 1nvt_A 71 T 71 (287)
T ss_dssp C
T ss_pred c
Confidence 5
No 24
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=49.13 E-value=85 Score=23.86 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=52.1
Q ss_pred ceEEEEEec---------hhhHHHHHhh------C---ccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCe
Q psy963 6 LQLVGLIGD---------EDSVVGFLLG------G---IGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDV 67 (128)
Q Consensus 6 ~~kIaVIgD---------~dtv~GFrLa------G---i~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~di 67 (128)
.-+||++.+ .+...|++|+ | +.|. .=.+.+.|...+++.+.++.++|+.++.+
T Consensus 4 ~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~---------~i~l~~~D~~~~~~~a~~~~~~li~~~~v 74 (374)
T 3n0x_A 4 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGR---------KIVVITKDDQSKPDLSKAALAEAYQDDGA 74 (374)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTE---------EEEEEEEECTTCHHHHHHHHHHHHHTSCC
T ss_pred CEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCE---------EEEEEEecCCCCHHHHHHHHHHHHHhCCc
Confidence 457888864 4667788875 2 3331 01245667777889999999999987777
Q ss_pred EEEEE--ehHHHHHHHHHHHHhhhCCCcccEEEE
Q psy963 68 GIVLI--TRLVADRIRHTLDIRERSNQVYPIVLE 99 (128)
Q Consensus 68 gIIiI--te~~a~~ir~~i~~~~~~~~~~P~Ive 99 (128)
-.|+= +...+..+...+++++ .|.|..
T Consensus 75 ~aiiG~~~s~~~~a~~~~~~~~~-----ip~i~~ 103 (374)
T 3n0x_A 75 DIAIGTSSSAAALADLPVAEENK-----KILIVE 103 (374)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHT-----CCEEEC
T ss_pred eEEEcCCCcHHHHHHHHHHHHcC-----ccEEEc
Confidence 66653 3445566666666543 577664
No 25
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=48.51 E-value=14 Score=28.21 Aligned_cols=56 Identities=7% Similarity=0.153 Sum_probs=39.5
Q ss_pred ccceEEEEEechhhHHHHH----hhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehH
Q psy963 4 EVLQLVGLIGDEDSVVGFL----LGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRL 75 (128)
Q Consensus 4 ~~~~kIaVIgD~dtv~GFr----LaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~ 75 (128)
....|||++|=...+.|++ +.|++= ..|.+.+ ++|++..++++.+ +++.+|+=.--
T Consensus 104 ~~~~kIavVg~~~~~~~~~~i~~ll~~~i-----------~~~~~~~----~ee~~~~i~~l~~-~G~~vVVG~~~ 163 (225)
T 2pju_A 104 KLTSSIGVVTYQETIPALVAFQKTFNLRL-----------DQRSYIT----EEDARGQINELKA-NGTEAVVGAGL 163 (225)
T ss_dssp CTTSCEEEEEESSCCHHHHHHHHHHTCCE-----------EEEEESS----HHHHHHHHHHHHH-TTCCEEEESHH
T ss_pred hhCCcEEEEeCchhhhHHHHHHHHhCCce-----------EEEEeCC----HHHHHHHHHHHHH-CCCCEEECCHH
Confidence 3457999999999988865 567652 2344544 3999999999874 67777654433
No 26
>3uf6_A LMO1369 protein; structural genomics, the center for structural genomics of I diseases, csgid, unknown function, transferase; HET: COD; 1.80A {Listeria monocytogenes} PDB: 3tng_A* 3u9e_A*
Probab=42.40 E-value=84 Score=24.76 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=45.9
Q ss_pred eEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEeh-HHHHHHHHHHH
Q psy963 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITR-LVADRIRHTLD 85 (128)
Q Consensus 7 ~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte-~~a~~ir~~i~ 85 (128)
-.+.++||++.+ +++-.+ .|.+++.+++++.++.+.. +++..+.-.++=.- ..++.++..+.
T Consensus 44 ~~~ILvG~~~~I---~~~~~~-------------~~eIid~~~~~~aar~a~~-mV~~G~ADa~vsG~~~t~~~lr~~l~ 106 (291)
T 3uf6_A 44 GKFLLFGKKEDK---TLTANE-------------SVTWIQTDTAEAAAQGAIL-AVKNKEADILVKGFIPTATLMHHVLK 106 (291)
T ss_dssp CEEEEEESSCCH---HHHTST-------------TEEEEECCSHHHHHHHHHH-HHHTTSCSEEEECSSCHHHHHHHHTC
T ss_pred ceEEEEcCHHHH---hhhccC-------------CCEEECCCChHHHHHHHHH-HHHCCCCCEEEECCCChHHHHHHHhc
Confidence 456789998877 333333 2677776655555555554 55555544333322 34667777665
Q ss_pred HhhhCCCccc-------EEEEcCCCCCC
Q psy963 86 IRERSNQVYP-------IVLEIPSALDA 106 (128)
Q Consensus 86 ~~~~~~~~~P-------~IveIPs~~g~ 106 (128)
+.. +..| .++.+|+.++.
T Consensus 107 ~~~---G~r~~~~vs~~~~~~~p~~~~~ 131 (291)
T 3uf6_A 107 KEN---GLRTDQLLSQIAIFDIPTYHKP 131 (291)
T ss_dssp GGG---SCCCSSCCEEEEEEECTTSSSC
T ss_pred ccc---CCCCCceeeEEEEEEEcCCCCc
Confidence 433 3333 46789976554
No 27
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=39.46 E-value=42 Score=22.91 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEe----------hHHHHHHHHHHHHhhhCCCcccEEEEc
Q psy963 52 DEIEDAFRTLVR--RTDVGIVLIT----------RLVADRIRHTLDIRERSNQVYPIVLEI 100 (128)
Q Consensus 52 eei~~~~~~l~~--~~digIIiIt----------e~~a~~ir~~i~~~~~~~~~~P~IveI 100 (128)
.++...+.+.+. +.|+-||.+. +...+.++..++.++.. ...++++.+
T Consensus 48 ~~~~~~~~~~~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~~~~~-~~~vil~~~ 107 (190)
T 1ivn_A 48 QQGLARLPALLKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAA-NAEPLLMQI 107 (190)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCTTTTSSSCCHHHHHHHHHHHHHHHHHT-TCEEEEECC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccccccCCCHHHHHHHHHHHHHHHHHc-CCCEEEEec
Confidence 344555655542 6787777664 22567788888888754 444455554
No 28
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=37.85 E-value=44 Score=23.67 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhcCC
Q psy963 52 DEIEDAFRTLVRRT 65 (128)
Q Consensus 52 eei~~~~~~l~~~~ 65 (128)
.++.+.+.++-++.
T Consensus 30 ~~L~~~l~~l~~~t 43 (148)
T 2kpt_A 30 TNIQAAIDDVKASE 43 (148)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhh
Confidence 45666666665443
No 29
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=37.41 E-value=1.3e+02 Score=22.42 Aligned_cols=81 Identities=20% Similarity=0.165 Sum_probs=48.6
Q ss_pred cceEEEEEec---------hhhHHHHHhh--------CccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCe
Q psy963 5 VLQLVGLIGD---------EDSVVGFLLG--------GIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDV 67 (128)
Q Consensus 5 ~~~kIaVIgD---------~dtv~GFrLa--------Gi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~di 67 (128)
..-+||++.. .+...|++++ |+.|. + -.+.+.|...+++...+.+++++.++.+
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~----~-----~~l~~~d~~~~~~~~~~~~~~l~~~~~v 73 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGR----P-----VDILYADSRDDADQARTIARAFVDDPRV 73 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTB----C-----EEEEEEECTTCHHHHHHHHHHHHHCTTE
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCe----E-----EEEEEecCCCCHHHHHHHHHHHhccCCc
Confidence 3467888875 3456677654 33221 0 1244556666778888999999955666
Q ss_pred EEEEE--ehHHHHHHHHHHHHhhhCCCcccEEEE
Q psy963 68 GIVLI--TRLVADRIRHTLDIRERSNQVYPIVLE 99 (128)
Q Consensus 68 gIIiI--te~~a~~ir~~i~~~~~~~~~~P~Ive 99 (128)
-.|+. +......+...+.+. ..|+|..
T Consensus 74 ~~iig~~~s~~~~~~~~~~~~~-----~iP~v~~ 102 (358)
T 3hut_A 74 VGVLGDFSSTVSMAAGSIYGKE-----GMPQLSP 102 (358)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH-----TCCEEES
T ss_pred EEEEcCCCcHHHHHHHHHHHHC-----CCcEEec
Confidence 55554 344455555555553 4688875
No 30
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=37.14 E-value=1.1e+02 Score=23.58 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=51.1
Q ss_pred ccceEEEEEec---------hhhHHHHHhh--------CccccccCCCCccccceEEEeCCC-CCHHHHHHHHHHHhcCC
Q psy963 4 EVLQLVGLIGD---------EDSVVGFLLG--------GIGHQTITPPLQTVTSNVFVVDKE-TPADEIEDAFRTLVRRT 65 (128)
Q Consensus 4 ~~~~kIaVIgD---------~dtv~GFrLa--------Gi~~~~~~~~~~~~~~~~~v~~~~-t~~eei~~~~~~l~~~~ 65 (128)
...-+||++.. .....||+|+ |+.|. + -.+.+.|.. .+++.+.++.++|+.++
T Consensus 12 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~----~-----i~l~~~D~~~~~~~~a~~~a~~li~~~ 82 (419)
T 3h5l_A 12 SDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGR----P-----IELVFADTQSKGVDVVIQSAQRLIDRD 82 (419)
T ss_dssp -CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBTTB----C-----EEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcCce----E-----EEEEEccCCCCCHHHHHHHHHHHhhhc
Confidence 44578999875 4667788886 44331 0 124566644 47788999999999877
Q ss_pred CeEEEEE--ehHHHHHHHHHHHHhhhCCCcccEEE
Q psy963 66 DVGIVLI--TRLVADRIRHTLDIRERSNQVYPIVL 98 (128)
Q Consensus 66 digIIiI--te~~a~~ir~~i~~~~~~~~~~P~Iv 98 (128)
.+-.|+= +...+..+....++++ .|.|-
T Consensus 83 ~v~aiiG~~~s~~~~a~~~~~~~~~-----ip~i~ 112 (419)
T 3h5l_A 83 NASALIAGYNLENGTALHDVAADAG-----VIAMH 112 (419)
T ss_dssp CCSEEECSCCSSCSCHHHHHHHHHT-----CEEEE
T ss_pred CCeEEEccccchhHHHhHHHHHHcC-----CeEEE
Confidence 7776662 3333444555555543 57775
No 31
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=36.01 E-value=96 Score=20.70 Aligned_cols=48 Identities=6% Similarity=0.121 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEeh----------HHHHHHHHHHHHhhhCCCcccEEEEc
Q psy963 52 DEIEDAFRTLVR--RTDVGIVLITR----------LVADRIRHTLDIRERSNQVYPIVLEI 100 (128)
Q Consensus 52 eei~~~~~~l~~--~~digIIiIte----------~~a~~ir~~i~~~~~~~~~~P~IveI 100 (128)
.++...+...+. +.|+-+|.+.- ...+.++..++.++.. ....+++.+
T Consensus 52 ~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~~~~~-~~~vvl~~~ 111 (185)
T 3hp4_A 52 GGALRRLDALLEQYEPTHVLIELGANDGLRGFPVKKMQTNLTALVKKSQAA-NAMTALMEI 111 (185)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECC
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeecccCCCCcCHHHHHHHHHHHHHHHHHc-CCeEEEEeC
Confidence 455556666653 77887776642 2366788888888854 444455554
No 32
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=35.09 E-value=79 Score=25.18 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=17.2
Q ss_pred CccccceEEEEEec----hhhHHHHHhhCcc
Q psy963 1 MAEEVLQLVGLIGD----EDSVVGFLLGGIG 27 (128)
Q Consensus 1 ~~~~~~~kIaVIgD----~dtv~GFrLaGi~ 27 (128)
|+.....+|||||- .....-|..+|++
T Consensus 1 Ma~p~~~~VaViGaG~MG~giA~~~a~~G~~ 31 (319)
T 3ado_A 1 MASPAAGDVLIVGSGLVGRSWAMLFASGGFR 31 (319)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCeEEEECCcHHHHHHHHHHHhCCCe
Confidence 77778899999998 4556778888986
No 33
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=34.55 E-value=85 Score=24.86 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=36.2
Q ss_pred cccceEEEEEechh--hH------HHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEe
Q psy963 3 EEVLQLVGLIGDED--SV------VGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLIT 73 (128)
Q Consensus 3 ~~~~~kIaVIgD~d--tv------~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIt 73 (128)
+...++.+|||++- +. ..|+..|++.. |...+ .+++++.++++.+.. .++.=+-||
T Consensus 34 ~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~Gl~~~------------Y~~~~--v~~~~l~~~~~~l~~-~~~~G~nVT 97 (315)
T 3tnl_A 34 TGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYV------------YLAFE--VGDKELKDVVQGFRA-MNLRGWNVS 97 (315)
T ss_dssp CTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCCEE------------EEEEE--CCHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred CCcccEEEEECCCccccccHHHHHHHHHHcCCCcE------------EEEEe--cCHHHHHHHHHHHhc-CCCCEEEEc
Confidence 45567899999943 32 48999999863 66543 245788888876653 344333444
No 34
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=34.32 E-value=1.6e+02 Score=22.67 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=44.4
Q ss_pred CccccceEEEEEec----hhhHHHHHhh--CccccccCCCCccccceEEEeCCCCCHHHHHHH-----------HHHHhc
Q psy963 1 MAEEVLQLVGLIGD----EDSVVGFLLG--GIGHQTITPPLQTVTSNVFVVDKETPADEIEDA-----------FRTLVR 63 (128)
Q Consensus 1 ~~~~~~~kIaVIgD----~dtv~GFrLa--Gi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~-----------~~~l~~ 63 (128)
|+..+..|||+||= ...+.+++-. |++ ...+.+.. ++.+++. ++++++
T Consensus 8 m~~~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~-------------lvav~d~~--~~~~~~~~~~~~~~~~~~~~~ll~ 72 (354)
T 3q2i_A 8 PITDRKIRFALVGCGRIANNHFGALEKHADRAE-------------LIDVCDID--PAALKAAVERTGARGHASLTDMLA 72 (354)
T ss_dssp CCCSSCEEEEEECCSTTHHHHHHHHHHTTTTEE-------------EEEEECSS--HHHHHHHHHHHCCEEESCHHHHHH
T ss_pred cCCCCcceEEEEcCcHHHHHHHHHHHhCCCCeE-------------EEEEEcCC--HHHHHHHHHHcCCceeCCHHHHhc
Confidence 45566789999995 3444555543 443 12344542 2333221 466776
Q ss_pred CCCeEEEEEehHH---HHHHHHHHHHhhhCCCcccEEEEcCCCC
Q psy963 64 RTDVGIVLITRLV---ADRIRHTLDIRERSNQVYPIVLEIPSAL 104 (128)
Q Consensus 64 ~~digIIiIte~~---a~~ir~~i~~~~~~~~~~P~IveIPs~~ 104 (128)
++++-+|+|+-.- ++.+... ++ ...++++|=|--.
T Consensus 73 ~~~~D~V~i~tp~~~h~~~~~~a---l~---~gk~v~~EKP~a~ 110 (354)
T 3q2i_A 73 QTDADIVILTTPSGLHPTQSIEC---SE---AGFHVMTEKPMAT 110 (354)
T ss_dssp HCCCSEEEECSCGGGHHHHHHHH---HH---TTCEEEECSSSCS
T ss_pred CCCCCEEEECCCcHHHHHHHHHH---HH---CCCCEEEeCCCcC
Confidence 5666666664332 3334333 33 3468888877543
No 35
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=33.88 E-value=41 Score=24.63 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=41.5
Q ss_pred ccceEEEEEechhhHHHHH----hhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHH
Q psy963 4 EVLQLVGLIGDEDSVVGFL----LGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADR 79 (128)
Q Consensus 4 ~~~~kIaVIgD~dtv~GFr----LaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ 79 (128)
....|||++|=+..+.|++ +.|++= ..|.+.+. +|++..++++. ++++.+|+=.--..+.
T Consensus 92 ~~~~kIavvg~~~~~~~~~~~~~ll~~~i-----------~~~~~~~~----~e~~~~i~~l~-~~G~~vvVG~~~~~~~ 155 (196)
T 2q5c_A 92 RFGNELALIAYKHSIVDKHEIEAMLGVKI-----------KEFLFSSE----DEITTLISKVK-TENIKIVVSGKTVTDE 155 (196)
T ss_dssp GGCSEEEEEEESSCSSCHHHHHHHHTCEE-----------EEEEECSG----GGHHHHHHHHH-HTTCCEEEECHHHHHH
T ss_pred hhCCcEEEEeCcchhhHHHHHHHHhCCce-----------EEEEeCCH----HHHHHHHHHHH-HCCCeEEECCHHHHHH
Confidence 3456999999988888876 456652 23555444 89999999887 4778886655444333
No 36
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=33.06 E-value=30 Score=22.26 Aligned_cols=13 Identities=8% Similarity=0.005 Sum_probs=8.4
Q ss_pred cceEEEEEechhh
Q psy963 5 VLQLVGLIGDEDS 17 (128)
Q Consensus 5 ~~~kIaVIgD~dt 17 (128)
...+|.++.|...
T Consensus 4 ~~~~ilivdd~~~ 16 (140)
T 3h5i_A 4 KDKKILIVEDSKF 16 (140)
T ss_dssp --CEEEEECSCHH
T ss_pred CCcEEEEEeCCHH
Confidence 4578999988544
No 37
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=33.03 E-value=1.5e+02 Score=21.98 Aligned_cols=53 Identities=9% Similarity=-0.018 Sum_probs=33.2
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCeEEEE--EehHHHHHHHHHHHHhhhCCCcccEEEEc
Q psy963 42 VFVVDKETPADEIEDAFRTLVRRTDVGIVL--ITRLVADRIRHTLDIRERSNQVYPIVLEI 100 (128)
Q Consensus 42 ~~v~~~~t~~eei~~~~~~l~~~~digIIi--Ite~~a~~ir~~i~~~~~~~~~~P~IveI 100 (128)
+.+.|...+++...+.+++|+. +.+-.|+ .+......+.+.+.+ ...|+|..-
T Consensus 46 l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~s~~~~~~~~~~~~-----~~ip~v~~~ 100 (356)
T 3ipc_A 46 IVLGDDVSDPKQGISVANKFVA-DGVKFVVGHANSGVSIPASEVYAE-----NGILEITPA 100 (356)
T ss_dssp EEEEECTTCHHHHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHHT-----TTCEEEESS
T ss_pred EEEecCCCCHHHHHHHHHHHHH-CCCcEEEcCCCcHHHHHHHHHHHh-----CCCeEEecC
Confidence 4566666777888999999997 4444444 334445555444444 457888743
No 38
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=32.32 E-value=54 Score=21.17 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHHhhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhccC
Q psy963 52 DEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIATL 124 (128)
Q Consensus 52 eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~~~ 124 (128)
..+++.|++. .=+|-.+=|+++ ...++++.+.....+..|.|+ |++..--.+++.+.+.+...++..|
T Consensus 18 ~~aK~~L~~~--gi~y~~idi~~d--~~~~~~~~~~~~G~~tVP~I~-i~Dg~~l~~~~~~el~~~L~el~gL 85 (92)
T 2lqo_A 18 LRLKTALTAN--RIAYDEVDIEHN--RAAAEFVGSVNGGNRTVPTVK-FADGSTLTNPSADEVKAKLVKIAGL 85 (92)
T ss_dssp HHHHHHHHHT--TCCCEEEETTTC--HHHHHHHHHHSSSSSCSCEEE-ETTSCEEESCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhc--CCceEEEEcCCC--HHHHHHHHHHcCCCCEeCEEE-EeCCEEEeCCCHHHHHHHHHHhcCC
Confidence 4455544432 223333434332 233444544431125679764 6665443455666777666666555
No 39
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=31.56 E-value=39 Score=21.18 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=9.1
Q ss_pred CccccceEEEEEechhhH
Q psy963 1 MAEEVLQLVGLIGDEDSV 18 (128)
Q Consensus 1 ~~~~~~~kIaVIgD~dtv 18 (128)
|+.....+|.++.|....
T Consensus 1 M~~~~~~~ilivdd~~~~ 18 (132)
T 3lte_A 1 MSLKQSKRILVVDDDQAM 18 (132)
T ss_dssp ------CEEEEECSCHHH
T ss_pred CCCCCCccEEEEECCHHH
Confidence 555667899999885443
No 40
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=31.09 E-value=46 Score=20.74 Aligned_cols=12 Identities=25% Similarity=0.119 Sum_probs=8.5
Q ss_pred ceEEEEEechhh
Q psy963 6 LQLVGLIGDEDS 17 (128)
Q Consensus 6 ~~kIaVIgD~dt 17 (128)
..+|.++.|...
T Consensus 5 ~~~ilivdd~~~ 16 (132)
T 2rdm_A 5 AVTILLADDEAI 16 (132)
T ss_dssp SCEEEEECSSHH
T ss_pred CceEEEEcCcHH
Confidence 467889888543
No 41
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=30.40 E-value=79 Score=25.15 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=30.2
Q ss_pred HHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEe
Q psy963 20 GFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLIT 73 (128)
Q Consensus 20 GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIt 73 (128)
-+.-.|++. .+...+.+++++|+.+.++++-+++++-=|++.
T Consensus 58 ~~~~~Gi~~------------~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvq 99 (285)
T 3l07_A 58 ACAQVGIDS------------QVITLPEHTTESELLELIDQLNNDSSVHAILVQ 99 (285)
T ss_dssp HHHHHTCEE------------EEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred HHHHcCCeE------------EEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEc
Confidence 455688875 245556678889999999999888777444444
No 42
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=29.65 E-value=78 Score=25.18 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=30.3
Q ss_pred HHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEe
Q psy963 20 GFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLIT 73 (128)
Q Consensus 20 GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIt 73 (128)
-+.-.|++. .+...+.+++++|+.+.++++-+++++-=|++.
T Consensus 57 ~~~~~Gi~~------------~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvq 98 (285)
T 3p2o_A 57 ACEECGIKS------------LVYHLNENITQNELLALINTLNHDDSVHGILVQ 98 (285)
T ss_dssp HHHHHTCEE------------EEEEECTTCCHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHHHcCCeE------------EEEECCCCCCHHHHHHHHHHHhCCCCCCEEEec
Confidence 455688875 245556678889999999999888777444444
No 43
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=29.25 E-value=1.5e+02 Score=22.02 Aligned_cols=82 Identities=15% Similarity=0.055 Sum_probs=50.8
Q ss_pred cceEEEEEech---------hhHHHHHhh-----C-ccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEE
Q psy963 5 VLQLVGLIGDE---------DSVVGFLLG-----G-IGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGI 69 (128)
Q Consensus 5 ~~~kIaVIgD~---------dtv~GFrLa-----G-i~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digI 69 (128)
..-+||++... +...|++++ | +.|. .-.+.+.|...+++...+.+++++.++.+-.
T Consensus 5 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~i~G~---------~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~ 75 (368)
T 4eyg_A 5 DTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDTVAGK---------KIEVILKDDAAIPDNTKRLAQELIVNDKVNV 75 (368)
T ss_dssp CEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSEETTE---------EEEEEEEECTTCHHHHHHHHHHHHHTSCCSE
T ss_pred CcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCCCCCe---------EEEEEEeCCCCCHHHHHHHHHHHHhcCCcEE
Confidence 45688888763 456677765 1 2221 0124566767778888999999997566555
Q ss_pred EE--EehHHHHHHHHHHHHhhhCCCcccEEEEc
Q psy963 70 VL--ITRLVADRIRHTLDIRERSNQVYPIVLEI 100 (128)
Q Consensus 70 Ii--Ite~~a~~ir~~i~~~~~~~~~~P~IveI 100 (128)
|+ .+......+...+.+. ..|+|..-
T Consensus 76 iiG~~~s~~~~~~~~~~~~~-----~ip~i~~~ 103 (368)
T 4eyg_A 76 IAGFGITPAALAAAPLATQA-----KVPEIVMA 103 (368)
T ss_dssp EEECSSHHHHHHHHHHHHHH-----TCCEEESS
T ss_pred EECCCccHHHHHHHHHHHhC-----CceEEecc
Confidence 54 4455566666655553 36887654
No 44
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=29.09 E-value=1.5e+02 Score=21.56 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEe
Q psy963 50 PADEIEDAFRTLVRRTDVGIVLIT 73 (128)
Q Consensus 50 ~~eei~~~~~~l~~~~digIIiIt 73 (128)
+.+++.++|++++++.++-+|++|
T Consensus 62 d~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 62 EIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEc
Confidence 368999999999864456678887
No 45
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=28.82 E-value=1.4e+02 Score=22.26 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEehH-------HHHHHHHHHHHhhhCCCcccEEEEcC
Q psy963 50 PADEIEDAFRTLVRRTDVGIVLITRL-------VADRIRHTLDIRERSNQVYPIVLEIP 101 (128)
Q Consensus 50 ~~eei~~~~~~l~~~~digIIiIte~-------~a~~ir~~i~~~~~~~~~~P~IveIP 101 (128)
+.+++.++|+++.+++++..|+|+-. ..+.+.+.+.+++.. ...|+|.-|-
T Consensus 30 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~-~~kPVia~v~ 87 (240)
T 3rst_A 30 NHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKE-TKKPIYVSMG 87 (240)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHH-HCCCEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHh-CCCeEEEEEC
Confidence 45899999999998899988888632 356788888887631 2569887764
No 46
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=27.65 E-value=53 Score=25.28 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=29.9
Q ss_pred cccceE-EEEEechhhH------HHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHh
Q psy963 3 EEVLQL-VGLIGDEDSV------VGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLV 62 (128)
Q Consensus 3 ~~~~~k-IaVIgD~dtv------~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~ 62 (128)
+...+. ++|||++.+. ..|+..|++.. |...++ +++.++++.+.
T Consensus 3 ~~~t~~~~~viG~PhS~SP~~hn~~~~~~gl~~~------------Y~~~~~----~~l~~~~~~~~ 53 (271)
T 1npy_A 3 NKDTQLCMSLSGRPSNFGTTFHNYLYDKLGLNFI------------YKAFTT----QDIEHAIKGVR 53 (271)
T ss_dssp CTTCEEEEEECSSCCSHHHHHHHHHHHHHTCCEE------------EEEECC----SCHHHHHHHHH
T ss_pred CCCceEEEEEECCCCcccHHHHHHHHHHcCCCcE------------EEeech----hhHHHHHHHhc
Confidence 344555 7999999663 57999999863 776563 56666665543
No 47
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=27.43 E-value=1.1e+02 Score=18.86 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=20.5
Q ss_pred HHHHHHhcCCCeEEEEEehHHHHH-HHHHHHHhhhCCCcccEEEEcCC
Q psy963 56 DAFRTLVRRTDVGIVLITRLVADR-IRHTLDIRERSNQVYPIVLEIPS 102 (128)
Q Consensus 56 ~~~~~l~~~~digIIiIte~~a~~-ir~~i~~~~~~~~~~P~IveIPs 102 (128)
++++.+ .+..+.+|++.-.+.+. --+.+..++......|+|+--+.
T Consensus 42 ~a~~~l-~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 42 DALELL-GGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHHHHH-TTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHH-hcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcC
Confidence 344433 35567788887554321 01222333322245677665443
No 48
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=27.42 E-value=36 Score=23.25 Aligned_cols=40 Identities=18% Similarity=0.072 Sum_probs=26.7
Q ss_pred eEEEEEec-hhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhc
Q psy963 7 QLVGLIGD-EDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVR 63 (128)
Q Consensus 7 ~kIaVIgD-~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~ 63 (128)
..+.+||| ..-+.+.+.+|+.. ..+... +++.+.++.+++
T Consensus 168 ~~~~~igD~~~Di~~a~~aG~~~-------------~~~~~~----~~~~~~l~~~l~ 208 (211)
T 2i6x_A 168 EETLFIDDGPANVATAERLGFHT-------------YCPDNG----ENWIPAITRLLR 208 (211)
T ss_dssp GGEEEECSCHHHHHHHHHTTCEE-------------ECCCTT----CCCHHHHHHHHT
T ss_pred HHeEEeCCCHHHHHHHHHcCCEE-------------EEECCH----HHHHHHHHHHHh
Confidence 45789999 44588999999963 234333 466666776664
No 49
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=27.01 E-value=99 Score=24.62 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=29.4
Q ss_pred HHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEe
Q psy963 20 GFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLIT 73 (128)
Q Consensus 20 GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIt 73 (128)
-+.-.|++. .+...+.+++++|+.+.++++-+++++-=|++.
T Consensus 59 ~~~~~Gi~~------------~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVq 100 (286)
T 4a5o_A 59 DCEEVGFLS------------QAYDLPAETSQDDLLALIDRLNDDPAIDGILVQ 100 (286)
T ss_dssp HHHHTTCEE------------EEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred HHHHcCCeE------------EEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEc
Confidence 345688874 245556677889999999998877777444444
No 50
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=26.98 E-value=1.5e+02 Score=20.21 Aligned_cols=43 Identities=9% Similarity=0.220 Sum_probs=27.6
Q ss_pred eEEEEEec-hhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhc
Q psy963 7 QLVGLIGD-EDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVR 63 (128)
Q Consensus 7 ~kIaVIgD-~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~ 63 (128)
..+.+||| ..-+.+.+.+|+.. +.+.. ....+++.+.+.++..
T Consensus 138 ~~~~~igD~~~Di~~a~~aG~~~-------------i~v~~-g~~~~~~~~~l~~~~~ 181 (187)
T 2wm8_A 138 SQMIFFDDERRNIVDVSKLGVTC-------------IHIQN-GMNLQTLSQGLETFAK 181 (187)
T ss_dssp GGEEEEESCHHHHHHHHTTTCEE-------------EECSS-SCCHHHHHHHHHHHHH
T ss_pred HHEEEEeCCccChHHHHHcCCEE-------------EEECC-CCChHHHHHHHHHHHH
Confidence 35778999 44456788889863 23333 3345777777777664
No 51
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=26.12 E-value=1.3e+02 Score=18.96 Aligned_cols=13 Identities=8% Similarity=0.077 Sum_probs=8.8
Q ss_pred ceEEEEEechhhH
Q psy963 6 LQLVGLIGDEDSV 18 (128)
Q Consensus 6 ~~kIaVIgD~dtv 18 (128)
..+|.++.|....
T Consensus 4 ~~~iLivdd~~~~ 16 (142)
T 2qxy_A 4 TPTVMVVDESRIT 16 (142)
T ss_dssp CCEEEEECSCHHH
T ss_pred CCeEEEEeCCHHH
Confidence 4678888885443
No 52
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A
Probab=25.39 E-value=1.1e+02 Score=20.78 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=17.7
Q ss_pred eEEEEEechh-h-HHHHHhhCccc
Q psy963 7 QLVGLIGDED-S-VVGFLLGGIGH 28 (128)
Q Consensus 7 ~kIaVIgD~d-t-v~GFrLaGi~~ 28 (128)
..+.++||.. . +.+++-+|+..
T Consensus 173 ~~~~~vGD~~~~Di~~a~~aG~~~ 196 (234)
T 3u26_A 173 EEAVYVGDNPVKDCGGSKNLGMTS 196 (234)
T ss_dssp GGEEEEESCTTTTHHHHHTTTCEE
T ss_pred hhEEEEcCCcHHHHHHHHHcCCEE
Confidence 4578999974 5 99999999753
No 53
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=25.15 E-value=1.7e+02 Score=20.14 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=48.6
Q ss_pred ceEEEEEechhhHHHHHhhCccc----cccC------CCCccccceEEEeCCCCCHHHHHHHHHHHhc---CCCeEEEEE
Q psy963 6 LQLVGLIGDEDSVVGFLLGGIGH----QTIT------PPLQTVTSNVFVVDKETPADEIEDAFRTLVR---RTDVGIVLI 72 (128)
Q Consensus 6 ~~kIaVIgD~dtv~GFrLaGi~~----~~~~------~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~---~~digIIiI 72 (128)
..+|.++||+=|..|+....-.. ..|. .......-|+-+ ...+ -.++...|.+++. +.|+-||.+
T Consensus 3 ~~~i~~~GDSit~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~v~n~g~-~G~~-~~~~~~~~~~~~~~~~~pd~vvi~~ 80 (240)
T 3mil_A 3 YEKFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYTRKMDILQRGF-KGYT-SRWALKILPEILKHESNIVMATIFL 80 (240)
T ss_dssp CEEEEEEESHHHHTTTCSCCSTTCCCCCCHHHHHHHHTTTTEEEEEEEC-TTCC-HHHHHHHHHHHHHHCCCEEEEEEEC
T ss_pred cccEEEEccchhhhhcCcccccccchHhHHHHHHHHHhccceEEEecCc-Cccc-HHHHHHHHHHHhcccCCCCEEEEEe
Confidence 47899999998886654321100 0000 000000112222 2223 3566666777764 345555544
Q ss_pred e--------------hHHHHHHHHHHHHhhhCCCcccEEEEcCCC
Q psy963 73 T--------------RLVADRIRHTLDIRERSNQVYPIVLEIPSA 103 (128)
Q Consensus 73 t--------------e~~a~~ir~~i~~~~~~~~~~P~IveIPs~ 103 (128)
. +.+.+.++..++.++.. ...++++..|..
T Consensus 81 G~ND~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~vil~~~~p~ 124 (240)
T 3mil_A 81 GANDACSAGPQSVPLPEFIDNIRQMVSLMKSY-HIRPIIIGPGLV 124 (240)
T ss_dssp CTTTTSSSSTTCCCHHHHHHHHHHHHHHHHHT-TCEEEEECCCCC
T ss_pred ecCcCCccCCCCCCHHHHHHHHHHHHHHHHHc-CCeEEEEcCCCC
Confidence 2 12466788888888865 455556655543
No 54
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=24.51 E-value=2.5e+02 Score=21.75 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=57.9
Q ss_pred HHhhCccccccCCCCccccceEEEeCC--CCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHHhhhCCCcccEEE
Q psy963 21 FLLGGIGHQTITPPLQTVTSNVFVVDK--ETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVL 98 (128)
Q Consensus 21 FrLaGi~~~~~~~~~~~~~~~~~v~~~--~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~~~~~~~~~P~Iv 98 (128)
++-.|++.+ +-|.++.+ .++.+|.-++|+++.+..-|.=|=++..-.+.+++.+...+.. ...|.++
T Consensus 124 L~rL~~dyi----------Dl~~lH~p~~~~~~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~-~~~~~~~ 192 (346)
T 3n6q_A 124 LKRMGLEYV----------DIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREW-KIPLLIH 192 (346)
T ss_dssp HHHHTCSCE----------EEEEECSCCTTSCHHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHHHTT-TCCCCEE
T ss_pred HHHhCCCcE----------eEEEEeCCCCCCCHHHHHHHHHHHHHcCCeeEEEeCCCCHHHHHHHHHHHHHc-CCCeEEE
Confidence 445677765 56777754 3456888999999998888888888988888887766554432 3446677
Q ss_pred EcCCCCCCCCCCCchHHHHHHhh
Q psy963 99 EIPSALDAFHYTITDEDKQCRNI 121 (128)
Q Consensus 99 eIPs~~g~~~~~~~~i~k~~~~~ 121 (128)
.++=.--......+.+..+|++.
T Consensus 193 Q~~~~l~~~~~~~~~l~~~~~~~ 215 (346)
T 3n6q_A 193 QPSYNLLNRWVDKSGLLDTLQNN 215 (346)
T ss_dssp ECBCBTTBCHHHHTTHHHHHHHH
T ss_pred eccCchhhcCcchhhHHHHHHHc
Confidence 77632211111112577888753
No 55
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.31 E-value=1.3e+02 Score=18.64 Aligned_cols=11 Identities=9% Similarity=0.268 Sum_probs=7.8
Q ss_pred eEEEEEechhh
Q psy963 7 QLVGLIGDEDS 17 (128)
Q Consensus 7 ~kIaVIgD~dt 17 (128)
.+|.++.|...
T Consensus 4 ~~ilivdd~~~ 14 (140)
T 2qr3_A 4 GTIIIVDDNKG 14 (140)
T ss_dssp CEEEEECSCHH
T ss_pred ceEEEEeCCHH
Confidence 57888888543
No 56
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=24.09 E-value=1.2e+02 Score=24.27 Aligned_cols=43 Identities=7% Similarity=0.060 Sum_probs=30.6
Q ss_pred HHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEeh
Q psy963 20 GFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITR 74 (128)
Q Consensus 20 GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte 74 (128)
-+.-.|++. .+...+.+++++|+.+.++++-+++++-=|++.-
T Consensus 61 ~~~~~Gi~~------------~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVql 103 (300)
T 4a26_A 61 AAAEVGMAS------------FNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQL 103 (300)
T ss_dssp HHHHTTCEE------------EEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECS
T ss_pred HHHHcCCeE------------EEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcC
Confidence 455688874 2455566778899999999998877775555543
No 57
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=23.96 E-value=2.1e+02 Score=20.88 Aligned_cols=84 Identities=10% Similarity=0.060 Sum_probs=48.3
Q ss_pred cceEEEEEech---------hhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEE--e
Q psy963 5 VLQLVGLIGDE---------DSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLI--T 73 (128)
Q Consensus 5 ~~~kIaVIgD~---------dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiI--t 73 (128)
..-+||++... +...|++++ ++.+ +.+ .-.+.+.|...+++...+.+++++.++.+-.|+. +
T Consensus 6 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a-~~~i--~g~----~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 78 (362)
T 3snr_A 6 NEITVGISVTTTGPAAALGIPERNALEFV-VKEI--SGH----PIKIIVLDDGGDPTAATTNARRFVTESKADVIMGSSV 78 (362)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHGGGGS-CSEE--TTE----EEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSS
T ss_pred CCeEEEEEecccCchhhcCHHHHHHHHHH-HHHh--CCe----EEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcCCC
Confidence 45689998762 345566553 3321 000 0123455666677888899999997755544443 3
Q ss_pred hHHHHHHHHHHHHhhhCCCcccEEEEc
Q psy963 74 RLVADRIRHTLDIRERSNQVYPIVLEI 100 (128)
Q Consensus 74 e~~a~~ir~~i~~~~~~~~~~P~IveI 100 (128)
......+.+.+.+. ..|+|..-
T Consensus 79 s~~~~~~~~~~~~~-----~ip~v~~~ 100 (362)
T 3snr_A 79 TPPSVAISNVANEA-----QIPHIALA 100 (362)
T ss_dssp HHHHHHHHHHHHHH-----TCCEEESS
T ss_pred cHHHHHHHHHHHHc-----CccEEEec
Confidence 44555555555553 36888754
No 58
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=23.69 E-value=45 Score=22.77 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCC-CeEEEEEehH
Q psy963 51 ADEIEDAFRTLVRRT-DVGIVLITRL 75 (128)
Q Consensus 51 ~eei~~~~~~l~~~~-digIIiIte~ 75 (128)
..|++++|+++.+.+ =.|+|+++.+
T Consensus 11 ~~evEe~l~RI~~~kgV~G~iIln~~ 36 (106)
T 2hz5_A 11 MAEVEETLKRLQSQKGVQGIIVVNTE 36 (106)
T ss_dssp ----CHHHHHHHTSTTEEEEEEECTT
T ss_pred HHHHHHHHHHHhcCCCceEEEEEcCC
Confidence 378999999998754 4788888863
No 59
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.59 E-value=95 Score=19.52 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=9.6
Q ss_pred CccccceEEEEEechhh
Q psy963 1 MAEEVLQLVGLIGDEDS 17 (128)
Q Consensus 1 ~~~~~~~kIaVIgD~dt 17 (128)
|......+|.++.|...
T Consensus 1 M~~~~~~~iLivdd~~~ 17 (140)
T 3grc_A 1 MSLAPRPRILICEDDPD 17 (140)
T ss_dssp ----CCSEEEEECSCHH
T ss_pred CCCCCCCCEEEEcCCHH
Confidence 44455678999988443
No 60
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=23.34 E-value=1.9e+02 Score=20.09 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=29.3
Q ss_pred HHHHHHHHH-Hh-cCCCeEEEEEe-------------hHHHHHHHHHHHHhhhCCCcccEEEEc-CCCCC
Q psy963 52 DEIEDAFRT-LV-RRTDVGIVLIT-------------RLVADRIRHTLDIRERSNQVYPIVLEI-PSALD 105 (128)
Q Consensus 52 eei~~~~~~-l~-~~~digIIiIt-------------e~~a~~ir~~i~~~~~~~~~~P~IveI-Ps~~g 105 (128)
.++...|.+ ++ .++|+-+|++. +...+.++..++.++.. ...++++.+ |....
T Consensus 64 ~~~l~r~~~~v~~~~Pd~vvi~~G~ND~~~~~~~~~~~~~~~~l~~ii~~~~~~-~~~iil~~~~P~~~~ 132 (209)
T 4hf7_A 64 YQFLLRFREDVINLSPALVVINAGTNDVAENTGAYNEDYTFGNIASMAELAKAN-KIKVILTSVLPAAEF 132 (209)
T ss_dssp HHHHHHHHHHTGGGCCSEEEECCCHHHHTTSSSSCCHHHHHHHHHHHHHHHHHT-TCEEEEECCCCCSCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCCcCccccccccHHHHHHHHHHhhHHHhcc-CceEEEEeeeccCcc
Confidence 455555655 44 36788777663 12345566666666643 455555555 44333
No 61
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=23.07 E-value=94 Score=23.58 Aligned_cols=53 Identities=9% Similarity=0.248 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEehHH--HHHHHHHHHHhhhCCCcccEEEEcCCCC
Q psy963 51 ADEIEDAFRTLVRRTDVGIVLITRLV--ADRIRHTLDIRERSNQVYPIVLEIPSAL 104 (128)
Q Consensus 51 ~eei~~~~~~l~~~~digIIiIte~~--a~~ir~~i~~~~~~~~~~P~IveIPs~~ 104 (128)
++-+++.|++-+++.+.-|++|++.. ...++.||+.-.-. ...|+|+.-|+..
T Consensus 66 e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~-~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 66 EKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGT-KGLPVIVIYPDYD 120 (189)
T ss_dssp TTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTT-TCCCEEEEETTCC
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHh-cCCcEEEEECCcc
Confidence 47899999999999999999999884 45677777765422 6789999999966
No 62
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=23.05 E-value=1.2e+02 Score=20.72 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=17.7
Q ss_pred EEEEEec-hhhHHHHHhhCcccc
Q psy963 8 LVGLIGD-EDSVVGFLLGGIGHQ 29 (128)
Q Consensus 8 kIaVIgD-~dtv~GFrLaGi~~~ 29 (128)
.+.+||| ..-+.+++.+|+..+
T Consensus 179 ~~v~vGD~~~Di~~a~~aG~~~v 201 (231)
T 3kzx_A 179 EVFFIGDSISDIQSAIEAGCLPI 201 (231)
T ss_dssp TEEEEESSHHHHHHHHHTTCEEE
T ss_pred CEEEEcCCHHHHHHHHHCCCeEE
Confidence 5789999 566889999999653
No 63
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=22.92 E-value=1.9e+02 Score=24.38 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=28.3
Q ss_pred cceEEEEEechhhHHHH----HhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcC
Q psy963 5 VLQLVGLIGDEDSVVGF----LLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRR 64 (128)
Q Consensus 5 ~~~kIaVIgD~dtv~GF----rLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~ 64 (128)
..++++|.||.+.+.|+ +=.|++-+ +++... ..++.++.++++++.
T Consensus 359 ~Gkrv~i~gd~~~~~~la~~L~ElGm~vv------------~v~~~~--~~~~~~~~~~~ll~~ 408 (519)
T 1qgu_B 359 HGKKFGLYGDPDFVMGLTRFLLELGCEPT------------VILSHN--ANKRWQKAMNKMLDA 408 (519)
T ss_dssp TTCEEEEESCHHHHHHHHHHHHHTTCEEE------------EEEETT--CCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCchHHHHHHHHHHHCCCEEE------------EEEeCC--CCHHHHHHHHHHHHh
Confidence 35799999999999983 33566531 222221 235566777777753
No 64
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=22.82 E-value=2.6e+02 Score=21.35 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=50.4
Q ss_pred HHhhCccccccCCCCccccceEEEeCC--CCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHHhhhCCCcccEEE
Q psy963 21 FLLGGIGHQTITPPLQTVTSNVFVVDK--ETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVL 98 (128)
Q Consensus 21 FrLaGi~~~~~~~~~~~~~~~~~v~~~--~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~~~~~~~~~P~Iv 98 (128)
++-.|++.+ +-|.++.+ .++.+|.-++|+++.+..-|.-|=++..-+..+.+.+...+..+...|.++
T Consensus 110 L~rLg~dyi----------Dl~~lH~p~~~~~~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~ 179 (327)
T 3eau_A 110 LERLQLEYV----------DVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICE 179 (327)
T ss_dssp HHHHTCSCE----------EEEEESSCCTTSCHHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHHHHTTCCCCCEE
T ss_pred HHHhCCCcc----------ceEEEeCCCCCCCHHHHHHHHHHHHHcCCeeEEeecCCCHHHHHHHHHHHHHcCCCCceee
Confidence 344577665 56777654 356788999999999888888888898888888776665443223457777
Q ss_pred EcCC
Q psy963 99 EIPS 102 (128)
Q Consensus 99 eIPs 102 (128)
.++=
T Consensus 180 Q~~~ 183 (327)
T 3eau_A 180 QAEY 183 (327)
T ss_dssp EEEC
T ss_pred cccc
Confidence 7753
No 65
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=21.98 E-value=1.5e+02 Score=21.24 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEe
Q psy963 50 PADEIEDAFRTLVRRTDVGIVLIT 73 (128)
Q Consensus 50 ~~eei~~~~~~l~~~~digIIiIt 73 (128)
+.+++.++|++++++.++-+|++|
T Consensus 65 d~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 65 DKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEC
Confidence 368999999999866456778887
No 66
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.88 E-value=30 Score=21.59 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCCe
Q psy963 52 DEIEDAFRTLVRRTDV 67 (128)
Q Consensus 52 eei~~~~~~l~~~~di 67 (128)
+|++++|.+|+++.+|
T Consensus 3 eEae~aF~~lL~~~~V 18 (59)
T 2b7e_A 3 MEAEKEFITMLKENQV 18 (59)
T ss_dssp THHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHcCC
Confidence 7999999999987765
No 67
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=21.84 E-value=77 Score=20.51 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=9.6
Q ss_pred cceEEEEEechhhH
Q psy963 5 VLQLVGLIGDEDSV 18 (128)
Q Consensus 5 ~~~kIaVIgD~dtv 18 (128)
...+|.++.|....
T Consensus 6 ~~~~iLivdd~~~~ 19 (154)
T 2rjn_A 6 KNYTVMLVDDEQPI 19 (154)
T ss_dssp SCCEEEEECSCHHH
T ss_pred CCCeEEEEcCCHHH
Confidence 34789899885543
No 68
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=21.79 E-value=1.2e+02 Score=18.91 Aligned_cols=40 Identities=20% Similarity=0.129 Sum_probs=26.5
Q ss_pred eEEEEEec-hhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhc
Q psy963 7 QLVGLIGD-EDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVR 63 (128)
Q Consensus 7 ~kIaVIgD-~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~ 63 (128)
..+.+||| ..-+.+.+-+|+.. +.+.. ..+..+.+.+++.
T Consensus 92 ~~~~~vgD~~~di~~a~~~G~~~-------------i~~~~----~~~~~~~l~~~~~ 132 (137)
T 2pr7_A 92 RDCVLVDDSILNVRGAVEAGLVG-------------VYYQQ----FDRAVVEIVGLFG 132 (137)
T ss_dssp GGEEEEESCHHHHHHHHHHTCEE-------------EECSC----HHHHHHHHHHHHT
T ss_pred ccEEEEcCCHHHHHHHHHCCCEE-------------EEeCC----hHHHHHHHHHHhC
Confidence 35788999 44588899999963 33422 2566666766663
No 69
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Probab=21.76 E-value=2.9e+02 Score=21.60 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=58.1
Q ss_pred HHhhCccccccCCCCccccceEEEeCC--CCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHHhhhCCCcccEEE
Q psy963 21 FLLGGIGHQTITPPLQTVTSNVFVVDK--ETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVL 98 (128)
Q Consensus 21 FrLaGi~~~~~~~~~~~~~~~~~v~~~--~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~~~~~~~~~P~Iv 98 (128)
++-.|++.+ +-|.++.+ .++.+|.-++|+++.+..-|.-|=++..-...+.+.+...+..+...|.++
T Consensus 144 L~rLg~dyi----------Dl~~lH~pd~~~~~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~ 213 (367)
T 3lut_A 144 LERLQLEYV----------DVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICE 213 (367)
T ss_dssp HHHHTCSCE----------EEEEESSCCTTSCHHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHhCCCcc----------ceEEecCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCceee
Confidence 345677765 56777754 345688999999999888888888888877777776655432224567888
Q ss_pred EcCCCCCCCCCCC--chHHHHHHh
Q psy963 99 EIPSALDAFHYTI--TDEDKQCRN 120 (128)
Q Consensus 99 eIPs~~g~~~~~~--~~i~k~~~~ 120 (128)
.++=.- +.... ..+..+|++
T Consensus 214 Q~~~~~--~~~~~~e~~l~~~~~~ 235 (367)
T 3lut_A 214 QAEYHM--FQREKVEVQLPELFHK 235 (367)
T ss_dssp EEECBT--TBCHHHHTHHHHHHHH
T ss_pred eccccc--eecchhHhHHHHHHHH
Confidence 886432 22221 256677775
No 70
>3tum_A Shikimate dehydrogenase family protein; rossmann-fold NAD(P)(+)-binding site, shikimate dehydrogenas substrate binding domain, oxidoreductase; HET: NAD; 2.15A {Pseudomonas putida}
Probab=21.36 E-value=1.8e+02 Score=22.34 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=36.7
Q ss_pred CccccceEEEEEec--hhhHH------HHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEE
Q psy963 1 MAEEVLQLVGLIGD--EDSVV------GFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLI 72 (128)
Q Consensus 1 ~~~~~~~kIaVIgD--~dtv~------GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiI 72 (128)
|-+.+++..||||+ ..|.. .|+..|++.. |...+- +++++.++++.+...+++.=+-|
T Consensus 1 MI~g~T~l~gviG~PI~HS~SP~ihn~~f~~~gl~~~------------Y~~~~v--~~~~l~~~~~~l~~~~~~~G~nV 66 (269)
T 3tum_A 1 MIRGSTELVAIVGSPIAQVKSPQNFNTWFNHNNCNLA------------MLPIDL--HEAALDSFADTLRGWQNLRGCVV 66 (269)
T ss_dssp --CTTCEEEEEEESSCTTCCHHHHHHHHHHHTTCSEE------------EEEEEB--CGGGHHHHHHHHHHBTTEEEEEE
T ss_pred CcCCCceEEEEECCCcchhhhHHHHHHHHHHcCCCeE------------EEEeec--CHhhHHHHHHHHHhccCCCeeEe
Confidence 66778889999999 45554 5899999863 653332 23666666665544445544455
Q ss_pred e
Q psy963 73 T 73 (128)
Q Consensus 73 t 73 (128)
|
T Consensus 67 T 67 (269)
T 3tum_A 67 T 67 (269)
T ss_dssp C
T ss_pred c
Confidence 5
No 71
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=20.87 E-value=1e+02 Score=20.70 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=20.9
Q ss_pred HHhhCccccccCCCCccccceEEEeCC-------CCCHHHHHHHHHHHhcC
Q psy963 21 FLLGGIGHQTITPPLQTVTSNVFVVDK-------ETPADEIEDAFRTLVRR 64 (128)
Q Consensus 21 FrLaGi~~~~~~~~~~~~~~~~~v~~~-------~t~~eei~~~~~~l~~~ 64 (128)
.+-.||.|+ +.|+|.++ ..+.+++.+.++.|++.
T Consensus 143 a~~~gv~gT----------PtfiINGky~v~~~~~~s~e~~~~~i~~Ll~k 183 (184)
T 4dvc_A 143 FQDSGLTGV----------PAVVVNNRYLVQGQSAKSLDEYFDLVNYLLTL 183 (184)
T ss_dssp HHHHTCCSS----------SEEEETTTEEECGGGCSSHHHHHHHHHHHTTC
T ss_pred HHHcCCCcC----------CEEEECCEEeeCCcCCCCHHHHHHHHHHHHhC
Confidence 345677763 66666432 23467788888877753
No 72
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.66 E-value=2.2e+02 Score=19.85 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=36.0
Q ss_pred HHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEe---hHHHHHHHHHHHHhhhCC-Cc
Q psy963 18 VVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLIT---RLVADRIRHTLDIRERSN-QV 93 (128)
Q Consensus 18 v~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIt---e~~a~~ir~~i~~~~~~~-~~ 93 (128)
..-|+..|++.+ .-....+++++.++.++. +.| +|.++ ....+.+++.++.++..+ ..
T Consensus 39 a~~l~~~G~eVi--------------~lG~~~p~e~lv~aa~~~--~~d--iV~lS~~~~~~~~~~~~~i~~L~~~g~~~ 100 (161)
T 2yxb_A 39 ARALRDAGFEVV--------------YTGLRQTPEQVAMAAVQE--DVD--VIGVSILNGAHLHLMKRLMAKLRELGADD 100 (161)
T ss_dssp HHHHHHTTCEEE--------------CCCSBCCHHHHHHHHHHT--TCS--EEEEEESSSCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCEEE--------------ECCCCCCHHHHHHHHHhc--CCC--EEEEEeechhhHHHHHHHHHHHHhcCCCC
Confidence 345677888632 223345678888777653 344 34444 345677777777776542 12
Q ss_pred ccEEE
Q psy963 94 YPIVL 98 (128)
Q Consensus 94 ~P~Iv 98 (128)
.|+++
T Consensus 101 i~v~v 105 (161)
T 2yxb_A 101 IPVVL 105 (161)
T ss_dssp SCEEE
T ss_pred CEEEE
Confidence 45555
No 73
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=20.64 E-value=2e+02 Score=19.26 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=43.3
Q ss_pred EEEEEechhhHHHHH------hhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHh-c-CCCeEEEEEe------
Q psy963 8 LVGLIGDEDSVVGFL------LGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLV-R-RTDVGIVLIT------ 73 (128)
Q Consensus 8 kIaVIgD~dtv~GFr------LaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~-~-~~digIIiIt------ 73 (128)
+|.++||+=|- |+. |.|.. .-|+-+.. .+. .++...+.+.+ . +.|+-+|.+.
T Consensus 24 ~i~~~GDSit~-g~~~~~~~~~~~~~-----------v~n~g~~G-~~~-~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~ 89 (204)
T 3p94_A 24 NVVFMGNSITD-GWWPADSTFFIRNN-----------FVDRGISG-QTT-SEMLVRFRQDVINLKPKAVVILAGINDIAH 89 (204)
T ss_dssp EEEEEESHHHH-THHHHCTTHHHHHT-----------EEEEECTT-CCH-HHHHHHHHHHTGGGCEEEEEEECCHHHHTT
T ss_pred eEEEEccchhh-cccchHHHhcccCc-----------eEEcccCc-ccH-HHHHHHHHHHHHhCCCCEEEEEeecCcccc
Confidence 89999998664 442 22221 11333322 333 55666665433 2 4555555542
Q ss_pred -------hHHHHHHHHHHHHhhhCCCcccEEEEcCCC
Q psy963 74 -------RLVADRIRHTLDIRERSNQVYPIVLEIPSA 103 (128)
Q Consensus 74 -------e~~a~~ir~~i~~~~~~~~~~P~IveIPs~ 103 (128)
+.+.+.++..++.++.. ...++++.+|..
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~vil~~~~p~ 125 (204)
T 3p94_A 90 NNGVIALENVFGNLVSMAELAKAN-HIKVIFCSVLPA 125 (204)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHT-TCEEEEECCCCC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCC
Confidence 23455677777877754 555566655443
No 74
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=20.55 E-value=3.3e+02 Score=21.76 Aligned_cols=86 Identities=12% Similarity=0.001 Sum_probs=49.9
Q ss_pred eEEEEEechhhHHHHHh-----hCccccccCCCCccccceEEEeCCCC--CHHHHHHHHHHHhcCCCeEEEEEe---hHH
Q psy963 7 QLVGLIGDEDSVVGFLL-----GGIGHQTITPPLQTVTSNVFVVDKET--PADEIEDAFRTLVRRTDVGIVLIT---RLV 76 (128)
Q Consensus 7 ~kIaVIgD~dtv~GFrL-----aGi~~~~~~~~~~~~~~~~~v~~~~t--~~eei~~~~~~l~~~~digIIiIt---e~~ 76 (128)
-+||+|+-+-++..-.+ .|++- + ++|.=-.. ..-...+.|+.|.++++.-+|++- +..
T Consensus 169 G~vgivSqSG~l~~~i~~~~~~~g~G~-----------S-~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~ 236 (334)
T 3mwd_B 169 GSVAYVSRSGGMSNELNNIISRTTDGV-----------Y-EGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGT 236 (334)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHHSSCE-----------E-EEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSS
T ss_pred CCEEEEeCchHHHHHHHHHHHhcCCCe-----------E-EEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCCh
Confidence 36999998877654433 55542 1 33321111 113466778877788887766664 333
Q ss_pred HHHHHHHHHHhhhCCCcccEEEEcCCCCCC
Q psy963 77 ADRIRHTLDIRERSNQVYPIVLEIPSALDA 106 (128)
Q Consensus 77 a~~ir~~i~~~~~~~~~~P~IveIPs~~g~ 106 (128)
.+ ++.++..+......|+|+-+.++..+
T Consensus 237 ~e--~~~~~~~r~~~~~KPVV~~kaGrs~~ 264 (334)
T 3mwd_B 237 EE--YKICRGIKEGRLTKPIVCWCIGTCAT 264 (334)
T ss_dssp HH--HHHHHHHHTTSCCSCEEEEEECTTCC
T ss_pred HH--HHHHHHHHhhcCCCCEEEEEcCCCcc
Confidence 33 33344443211568999999887765
No 75
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.47 E-value=1.2e+02 Score=18.97 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=9.4
Q ss_pred ccceEEEEEechhh
Q psy963 4 EVLQLVGLIGDEDS 17 (128)
Q Consensus 4 ~~~~kIaVIgD~dt 17 (128)
....+|.++.|...
T Consensus 5 ~~~~~iLivdd~~~ 18 (142)
T 3cg4_A 5 EHKGDVMIVDDDAH 18 (142)
T ss_dssp -CCCEEEEECSCHH
T ss_pred CCCCeEEEEcCCHH
Confidence 45578988888543
Done!