Query psy963
Match_columns 128
No_of_seqs 105 out of 507
Neff 5.3
Searched_HMMs 13730
Date Sat Aug 17 00:38:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy963.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/963hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d00a1 c.149.1.1 (A:6-109) V- 99.9 6.8E-27 5E-31 163.7 6.3 96 9-122 1-98 (104)
2 d2i4ra1 c.149.1.1 (A:4-79) V-t 99.9 2E-23 1.4E-27 139.2 6.0 76 9-101 1-76 (76)
3 d2nu7b1 c.23.4.1 (B:239-388) S 78.4 5.9 0.00043 27.2 8.0 86 40-128 46-150 (150)
4 d1eucb1 c.23.4.1 (B:246-393) S 78.4 5.1 0.00037 27.6 7.6 82 9-104 21-115 (148)
5 d2pjua1 c.92.3.1 (A:11-196) Pr 53.8 5 0.00036 28.2 3.3 58 4-77 92-153 (186)
6 d1uuya_ c.57.1.1 (A:) Plant CN 53.1 6.5 0.00048 26.6 3.8 30 42-73 47-76 (161)
7 d1qo0a_ c.93.1.1 (A:) Amide re 47.3 28 0.0021 24.8 6.9 56 42-102 45-102 (373)
8 d1h6da1 c.2.1.3 (A:51-212,A:37 44.9 27 0.002 23.9 6.2 56 59-119 93-148 (221)
9 d1t3ta2 c.23.16.1 (A:1034-1295 41.5 7.3 0.00053 28.7 2.6 27 2-28 2-34 (262)
10 d3ct6a1 c.54.1.2 (A:1-123) PTS 38.4 43 0.0031 21.5 6.0 51 66-120 2-55 (123)
11 d2b4aa1 c.23.1.1 (A:2-119) Hyp 37.4 11 0.00082 23.6 2.8 78 7-99 3-81 (118)
12 d1pvva2 c.78.1.1 (A:151-313) O 35.8 22 0.0016 23.5 4.2 23 5-27 3-30 (163)
13 d1nvta2 c.58.1.5 (A:1-110) Shi 34.8 26 0.0019 21.9 4.3 28 1-28 6-41 (110)
14 d1f0ya2 c.2.1.6 (A:12-203) Sho 32.8 46 0.0033 22.3 5.7 21 7-27 5-29 (192)
15 d2b0ca1 c.108.1.2 (A:8-204) Pu 31.5 15 0.0011 22.7 2.6 22 7-28 159-181 (197)
16 d1geqa_ c.1.2.4 (A:) Trp synth 31.3 77 0.0056 22.6 7.0 92 14-125 97-193 (248)
17 d1wdka3 c.2.1.6 (A:311-496) Fa 31.1 42 0.0031 22.3 5.2 21 7-27 5-29 (186)
18 d2csua1 c.2.1.8 (A:1-129) Acet 31.0 11 0.00082 24.4 2.0 82 7-107 9-102 (129)
19 d1vh0a_ c.116.1.3 (A:) Hypothe 30.5 58 0.0042 21.2 5.8 58 63-126 68-129 (157)
20 d1uf3a_ d.159.1.6 (A:) Hypothe 29.8 56 0.0041 20.7 5.5 51 52-106 19-75 (228)
21 d1nyta2 c.58.1.5 (A:1-101) Shi 28.8 39 0.0028 20.6 4.3 54 7-75 2-63 (101)
22 d1ydla1 d.295.1.1 (A:6-71) Gen 27.2 22 0.0016 21.1 2.6 26 69-95 37-62 (66)
23 d1npya2 c.58.1.5 (A:1-102) Shi 26.5 42 0.0031 20.5 4.2 27 3-29 3-36 (102)
24 d2csua3 c.23.4.1 (A:291-453) A 26.5 74 0.0054 20.2 6.9 25 48-72 60-84 (163)
25 d1zesa1 c.23.1.1 (A:3-123) Pho 26.3 40 0.0029 20.6 4.1 22 54-76 33-54 (121)
26 d3bula2 c.23.6.1 (A:741-896) M 25.0 87 0.0063 20.5 7.0 61 19-97 28-91 (156)
27 d1otha2 c.78.1.1 (A:185-354) O 24.7 21 0.0015 23.5 2.5 23 5-27 3-30 (170)
28 d1dcfa_ c.23.1.2 (A:) Receiver 24.4 76 0.0055 19.6 5.5 18 1-18 2-19 (134)
29 d2ayxa1 c.23.1.1 (A:817-949) S 24.3 33 0.0024 21.5 3.3 54 1-75 3-61 (133)
30 d1jxha_ c.72.1.2 (A:) 4-amino- 24.0 1.1E+02 0.0079 21.3 8.3 52 50-104 56-111 (266)
31 d2c4na1 c.108.1.14 (A:1-250) N 24.0 19 0.0013 24.6 2.1 22 7-28 194-217 (250)
32 d1ns5a_ c.116.1.3 (A:) Hypothe 23.9 88 0.0064 20.1 6.1 56 64-126 65-124 (153)
33 d1vl6a2 c.58.1.3 (A:1-154) Mal 23.8 69 0.005 21.8 5.2 56 4-75 55-131 (154)
34 d1ccwa_ c.23.6.1 (A:) Glutamat 23.7 77 0.0056 20.3 5.3 57 18-90 24-81 (137)
35 d1es9a_ c.23.10.3 (A:) Platele 23.7 73 0.0053 20.9 5.3 78 6-89 34-122 (212)
36 d1p6qa_ c.23.1.1 (A:) CheY pro 23.3 65 0.0047 19.8 4.7 19 1-19 1-19 (129)
37 d1ydwa1 c.2.1.3 (A:6-133,A:305 23.1 34 0.0025 22.3 3.4 45 58-105 58-102 (184)
38 d1zh8a1 c.2.1.3 (A:4-131,A:276 23.0 34 0.0025 22.3 3.4 46 58-106 59-104 (181)
39 d2f1ka2 c.2.1.6 (A:1-165) Prep 22.7 86 0.0063 19.6 8.8 21 7-27 1-25 (165)
40 d1vjra_ c.108.1.14 (A:) Hypoth 22.6 44 0.0032 22.5 4.0 23 6-28 202-226 (261)
41 d2f5tx2 d.136.1.5 (X:110-246) 22.5 78 0.0057 20.8 5.0 59 51-110 8-69 (137)
42 d1ldna1 c.2.1.5 (A:15-162) Lac 22.4 18 0.0013 23.7 1.7 25 1-25 1-27 (148)
43 d2dt5a2 c.2.1.12 (A:78-203) Tr 22.1 61 0.0044 20.2 4.4 68 7-102 29-96 (126)
44 d1ybha3 c.36.1.9 (A:460-667) A 22.0 34 0.0025 23.3 3.3 12 52-63 160-171 (208)
45 d1vlva2 c.78.1.1 (A:153-313) O 21.8 66 0.0048 20.6 4.7 23 5-27 2-30 (161)
46 d1rz3a_ c.37.1.6 (A:) Hypothet 21.7 49 0.0036 20.6 3.9 27 92-121 19-45 (198)
47 d1omza_ c.68.1.15 (A:) Alpha-1 21.5 61 0.0045 20.0 4.3 13 51-63 15-27 (265)
48 d2cl5a1 c.66.1.1 (A:3-216) Cat 21.1 44 0.0032 22.9 3.8 49 50-105 19-68 (214)
49 d2amya1 c.108.1.10 (A:4-246) P 20.5 31 0.0022 22.1 2.6 40 6-62 198-242 (243)
50 d1pjra2 c.37.1.19 (A:319-651) 20.3 61 0.0044 22.1 4.4 40 54-98 18-62 (333)
No 1
>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF {Thermus thermophilus [TaxId: 274]}
Probab=99.93 E-value=6.8e-27 Score=163.69 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=86.3
Q ss_pred EEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHHhh
Q psy963 9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRE 88 (128)
Q Consensus 9 IaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~~~ 88 (128)
||||||+||++||||+|+++ |.+.++ +|++++|+++++++|||||+|||++++.+++.+++++
T Consensus 1 IaViGd~dtv~GFrLaGi~~-------------~~v~~~----ee~~~~l~~l~~~~d~gII~Ite~~~~~i~~~i~~~~ 63 (104)
T d2d00a1 1 MAVIADPETAQGFRLAGLEG-------------YGASSA----EEAQSLLETLVERGGYALVAVDEALLPDPERAVERLM 63 (104)
T ss_dssp EEEEECHHHHHHHHHTTSEE-------------EECSSH----HHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHT
T ss_pred CEEEcCHHHHHHHHHcCCee-------------ecCCCH----HHHHHHHHHHHhCCCeEEEEEcHHHHHhhHHHHHHHH
Confidence 79999999999999999974 666554 9999999999999999999999999999999999998
Q ss_pred hCCCcccEEEEcCCCCCCCCCCC--chHHHHHHhhc
Q psy963 89 RSNQVYPIVLEIPSALDAFHYTI--TDEDKQCRNIA 122 (128)
Q Consensus 89 ~~~~~~P~IveIPs~~g~~~~~~--~~i~k~~~~~~ 122 (128)
.+ +..|+|++||+++|+++.+. +++.+++|+.+
T Consensus 64 ~~-~~~P~Il~IP~~~g~~~~~~~~~~ir~~v~rAi 98 (104)
T d2d00a1 64 RG-RDLPVLLPIAGLKEAFQGHDVEGYMRELVRKTI 98 (104)
T ss_dssp TC-CCCCEEEEESCGGGGGSSSCHHHHHHHHHHHHH
T ss_pred hc-CCCCEEEEeCCCCCCCCcchHHHHHHHHHHHHh
Confidence 65 78999999999999876654 46999999876
No 2
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.88 E-value=2e-23 Score=139.22 Aligned_cols=76 Identities=26% Similarity=0.502 Sum_probs=66.9
Q ss_pred EEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHHhh
Q psy963 9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRE 88 (128)
Q Consensus 9 IaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~~~ 88 (128)
||||||+||++||||||++++ |.+.++ +|++++|+++++++|||||+|||++++.+++.+.+..
T Consensus 1 IaViGd~dtv~GF~LaGi~~~------------~~v~~~----ee~~~~i~~~~~~~digII~Ite~~a~~i~~~i~~~~ 64 (76)
T d2i4ra1 1 LAVVGDPDFTIGFMLAGISDI------------YEVTSD----EEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREI 64 (76)
T ss_dssp EEEEECHHHHHHHHHTTCCCE------------EECCSH----HHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTT
T ss_pred CEEEechHHHHHHHHhCCCcc------------ccCCCH----HHHHHHHHHHhcCCCeEEEEEeHHHHHHhhHHHHHHH
Confidence 799999999999999999852 566554 9999999999999999999999999999999996644
Q ss_pred hCCCcccEEEEcC
Q psy963 89 RSNQVYPIVLEIP 101 (128)
Q Consensus 89 ~~~~~~P~IveIP 101 (128)
.+ +..|+|++|.
T Consensus 65 ~~-~~~P~Vi~Ig 76 (76)
T d2i4ra1 65 DE-KVEPTFVSVG 76 (76)
T ss_dssp TT-CCSSEEEEEC
T ss_pred hc-CCCCEEEecC
Confidence 43 8999999984
No 3
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=78.37 E-value=5.9 Score=27.23 Aligned_cols=86 Identities=16% Similarity=0.265 Sum_probs=63.3
Q ss_pred ceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEe--------hHHHHHHHHHHHHhhhCCCcccEEEEcCCCCCCCC---
Q psy963 40 SNVFVVDKETPADEIEDAFRTLVRRTDVGIVLIT--------RLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFH--- 108 (128)
Q Consensus 40 ~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIt--------e~~a~~ir~~i~~~~~~~~~~P~IveIPs~~g~~~--- 108 (128)
-||.=....++.+.+.++|+-+++++.+-.|||+ ..+|+.|-+.+.+.. ...|+||-+-+.+...+
T Consensus 46 ANFlDiGG~a~~e~v~~al~lil~d~~vk~IlINifGGI~rcd~vA~GIv~A~k~~~---~~iPiVVRl~Gtn~eeg~~i 122 (150)
T d2nu7b1 46 ANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVG---VNVPVVVRLEGNNAELGAKK 122 (150)
T ss_dssp CEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHHHHHHHHHHT---CCSCEEEEEESTTHHHHHHH
T ss_pred eEEEecCCCccHHHHHHHHHHHHcCCCCCEEEEEEeeeeehhHHHHHHHHHHHHhcC---CCCcEEEEecCCCHHHHHHH
Confidence 4788666677889999999999999999999997 557888877777765 66899999877654110
Q ss_pred --------CCCchHHHHHHhhccCCCCC
Q psy963 109 --------YTITDEDKQCRNIATLPKKK 128 (128)
Q Consensus 109 --------~~~~~i~k~~~~~~~~~~~~ 128 (128)
..-+++++-++.++.|-|.|
T Consensus 123 L~~~gl~i~~~~~l~eAa~~aV~lakg~ 150 (150)
T d2nu7b1 123 LADSGLNIIAAKGLTDAAQQVVAAVEGK 150 (150)
T ss_dssp HHHHCSSEEECSSHHHHHHHHHHTTTTC
T ss_pred HHHCCCCeEEeCCHHHHHHHHHHHhcCC
Confidence 02356667777777666654
No 4
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=78.36 E-value=5.1 Score=27.58 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=61.2
Q ss_pred EEEEech-----hhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEe--------hH
Q psy963 9 VGLIGDE-----DSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLIT--------RL 75 (128)
Q Consensus 9 IaVIgD~-----dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIt--------e~ 75 (128)
|++|++= .|.=-....|-.- -||.=....++.+.+.++|+-+++++.+-.|||+ ..
T Consensus 21 IG~i~NGAGlaMaTmD~i~~~Gg~p-----------ANFlDiGGga~~e~v~~al~iil~d~~Vk~IlINIfGGI~rcD~ 89 (148)
T d1eucb1 21 IACFVNGAGLAMATCDIIFLNGGKP-----------ANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAI 89 (148)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTCCB-----------SEEEECCSSCCHHHHHHHHHHTTSCTTCCEEEEEEECSSSCHHH
T ss_pred EEEEecCCccchhHHHHHHHcCCCe-----------eeEEecCCCCCHHHHHHHHHHHHCCCCccEEEEEeeEeehhHHH
Confidence 6777662 2333445556543 4788666677889999999999999999999987 55
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEEcCCCC
Q psy963 76 VADRIRHTLDIRERSNQVYPIVLEIPSAL 104 (128)
Q Consensus 76 ~a~~ir~~i~~~~~~~~~~P~IveIPs~~ 104 (128)
+|+.|-+.+.+.. ...|+|+-+-+.+
T Consensus 90 vA~GIv~A~~e~~---~~iPiVVRL~Gtn 115 (148)
T d1eucb1 90 IANGITKACRELE---LKVPLVVRLEGTN 115 (148)
T ss_dssp HHHHHHHHHHHHT---CCSCEEEEEESTT
T ss_pred HHHHHHHHHHhcC---CCccEEEEeccCC
Confidence 7888877777766 6689999988664
No 5
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}
Probab=53.79 E-value=5 Score=28.19 Aligned_cols=58 Identities=7% Similarity=0.153 Sum_probs=41.8
Q ss_pred ccceEEEEEechhhHHHH----HhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHH
Q psy963 4 EVLQLVGLIGDEDSVVGF----LLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVA 77 (128)
Q Consensus 4 ~~~~kIaVIgD~dtv~GF----rLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a 77 (128)
....|||++|-..++.|+ .+.|++- ..|...+. +|++..++++. ++.+.+|+=.--..
T Consensus 92 ~~~~kiavV~~~~~~~~~~~~~~ll~~~i-----------~~~~~~~~----~e~~~~v~~l~-~~G~~vVVG~~~~~ 153 (186)
T d2pjua1 92 KLTSSIGVVTYQETIPALVAFQKTFNLRL-----------DQRSYITE----EDARGQINELK-ANGTEAVVGAGLIT 153 (186)
T ss_dssp CTTSCEEEEEESSCCHHHHHHHHHHTCCE-----------EEEEESSH----HHHHHHHHHHH-HTTCCEEEESHHHH
T ss_pred HhCCCEEEEeCCccchHHHHHHHHhCCce-----------EEEEecCH----HHHHHHHHHHH-HCCCCEEECChHHH
Confidence 455799999998888887 4567763 23555444 99999999887 56788885554443
No 6
>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=53.08 E-value=6.5 Score=26.61 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=23.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEe
Q psy963 42 VFVVDKETPADEIEDAFRTLVRRTDVGIVLIT 73 (128)
Q Consensus 42 ~~v~~~~t~~eei~~~~~~l~~~~digIIiIt 73 (128)
|.++.+ +.+.+.++|+++++++++-+|+.|
T Consensus 47 ~~ivpD--d~~~I~~~l~~~~~~~~~D~Iitt 76 (161)
T d1uuya_ 47 TAVVPD--EVERIKDILQKWSDVDEMDLILTL 76 (161)
T ss_dssp EEEECS--CHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EEEECC--CHHHHHHHHHHhhhcCCceEEEEe
Confidence 444443 469999999999887788889888
No 7
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=47.26 E-value=28 Score=24.77 Aligned_cols=56 Identities=9% Similarity=0.127 Sum_probs=40.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCeEEEE--EehHHHHHHHHHHHHhhhCCCcccEEEEcCC
Q psy963 42 VFVVDKETPADEIEDAFRTLVRRTDVGIVL--ITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102 (128)
Q Consensus 42 ~~v~~~~t~~eei~~~~~~l~~~~digIIi--Ite~~a~~ir~~i~~~~~~~~~~P~IveIPs 102 (128)
+.+.|...+++...++.++|+.++.+-+|+ .+......+.+.+++.+ .|.+..-++
T Consensus 45 l~~~D~~~~~~~a~~~a~~Li~~~~V~aiiG~~~S~~~~av~~~~~~~~-----vp~i~~~~~ 102 (373)
T d1qo0a_ 45 TLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERAD-----ALLCYPTPY 102 (373)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCSHHHHHHHHHHHHHHT-----CEEEECSCC
T ss_pred EEEEcCCCCHHHHHHHHHHHHhhCCceEEEechhhhhhhhhHHHHHHhC-----CcEEecccc
Confidence 556677788899999999999888876665 34556666777666644 466655443
No 8
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}
Probab=44.88 E-value=27 Score=23.94 Aligned_cols=56 Identities=9% Similarity=0.036 Sum_probs=33.4
Q ss_pred HHHhcCCCeEEEEEehHHHHHHHHHHHHhhhCCCcccEEEEcCCCCCCCCCCCchHHHHHH
Q psy963 59 RTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCR 119 (128)
Q Consensus 59 ~~l~~~~digIIiIte~~a~~ir~~i~~~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~ 119 (128)
+++++++++-+|+|+-.-.......+..++ ...++++|=|--... .+...+.+.++
T Consensus 93 ~ell~~~~iD~V~I~tp~~~H~~~~~~al~---~gk~v~~EKPla~~~--~e~~~l~~~a~ 148 (221)
T d1h6da1 93 DKIAKDPKIDAVYIILPNSLHAEFAIRAFK---AGKHVMCEKPMATSV--ADCQRMIDAAK 148 (221)
T ss_dssp GGGGGCTTCCEEEECSCGGGHHHHHHHHHH---TTCEEEECSSCCSSH--HHHHHHHHHHH
T ss_pred hhhcccccceeeeeccchhhhhhHHHHhhh---cchhhhcCCCccCCH--HHHHHHHHHHH
Confidence 566778888777776554444444444445 457999998865543 13334444444
No 9
>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}
Probab=41.47 E-value=7.3 Score=28.73 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=23.9
Q ss_pred ccccceEEEEE------echhhHHHHHhhCccc
Q psy963 2 AEEVLQLVGLI------GDEDSVVGFLLGGIGH 28 (128)
Q Consensus 2 ~~~~~~kIaVI------gD~dtv~GFrLaGi~~ 28 (128)
|+..+.||||| +|.||...|+++|++.
T Consensus 2 ~~~~kpkvaVl~~pGtNcd~e~~~Af~~aG~~~ 34 (262)
T d1t3ta2 2 ATGARPKVAVLREQGVNSHVEMAAAFHRAGFDA 34 (262)
T ss_dssp TTTCCCEEEEEECTTBCCHHHHHHHHHHTTCEE
T ss_pred CCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCce
Confidence 56778999999 7899999999999974
No 10
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=38.42 E-value=43 Score=21.54 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=30.5
Q ss_pred CeEEEEEe--hHHHHHHHHHHHHhhhCCCcccEEEEcCC-CCCCCCCCCchHHHHHHh
Q psy963 66 DVGIVLIT--RLVADRIRHTLDIRERSNQVYPIVLEIPS-ALDAFHYTITDEDKQCRN 120 (128)
Q Consensus 66 digIIiIt--e~~a~~ir~~i~~~~~~~~~~P~IveIPs-~~g~~~~~~~~i~k~~~~ 120 (128)
.+|||+++ +.+|+.+.+.++... +..| |..+-+ .+++.+...+.|...+++
T Consensus 2 ~~GiviVSHs~~~A~gi~el~~qm~---~~~~-i~~~gg~~D~~igt~~~~I~~~I~~ 55 (123)
T d3ct6a1 2 TYGIVIVSHSPEIASGLKKLIREVA---KNIS-LTAIGGLENGEIGTSFDRVMNAIEE 55 (123)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHTTC---SSSC-EEEEESCTTSCSSCCHHHHHHHHHH
T ss_pred ceeEEEEECCHHHHHHHHHHHHHhc---CCCe-EEEecCCCCCCCCcCHHHHHHHHHh
Confidence 37888887 458888888887764 3334 333333 245555555555554443
No 11
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}
Probab=37.37 E-value=11 Score=23.60 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=37.7
Q ss_pred eEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHH-HHHHHH
Q psy963 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADR-IRHTLD 85 (128)
Q Consensus 7 ~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~-ir~~i~ 85 (128)
.||.||-|...+.-+.-.-++.. +|-|... ....++++.+.+...+-+|++.-.+.+. =-+.+.
T Consensus 3 ~rILvVdDd~~~~~~l~~~L~~~-----------g~~v~~~----~~~~~al~~l~~~~~~dliilD~~lp~~~G~el~~ 67 (118)
T d2b4aa1 3 FRVTLVEDEPSHATLIQYHLNQL-----------GAEVTVH----PSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLD 67 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-----------TCEEEEE----SSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHhc-----------CCCeEEE----CCHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHH
Confidence 57889988666554332222210 1222221 2333455555544457789998775221 112233
Q ss_pred HhhhCCCcccEEEE
Q psy963 86 IRERSNQVYPIVLE 99 (128)
Q Consensus 86 ~~~~~~~~~P~Ive 99 (128)
.++......|+|+-
T Consensus 68 ~ir~~~~~~pii~l 81 (118)
T d2b4aa1 68 IVKEQTKQPSVLIL 81 (118)
T ss_dssp HHTTSSSCCEEEEE
T ss_pred HHHhcCCCCcEEEE
Confidence 33322245686664
No 12
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=35.77 E-value=22 Score=23.49 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=16.9
Q ss_pred cceEEEEEec-----hhhHHHHHhhCcc
Q psy963 5 VLQLVGLIGD-----EDSVVGFLLGGIG 27 (128)
Q Consensus 5 ~~~kIaVIgD-----~dtv~GFrLaGi~ 27 (128)
+..+|+++|| .-.+..+...|++
T Consensus 3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~~ 30 (163)
T d1pvva2 3 KGVKVVYVGDGNNVAHSLMIAGTKLGAD 30 (163)
T ss_dssp TTCEEEEESCCCHHHHHHHHHHHHTTCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCe
Confidence 3579999999 3444677777875
No 13
>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=34.80 E-value=26 Score=21.93 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=17.9
Q ss_pred CccccceEEEEEech--hhH------HHHHhhCccc
Q psy963 1 MAEEVLQLVGLIGDE--DSV------VGFLLGGIGH 28 (128)
Q Consensus 1 ~~~~~~~kIaVIgD~--dtv------~GFrLaGi~~ 28 (128)
|...+++++|+||++ .+. .-|+-.|++.
T Consensus 6 mi~~~tk~~gliG~pi~~S~SP~ihn~~~~~~gi~~ 41 (110)
T d1nvta2 6 MINAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNY 41 (110)
T ss_dssp CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCE
T ss_pred ccCCCccEEEEEcCCcccccCHHHHHHHHHHcCCcE
Confidence 455667788999985 222 3456667654
No 14
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.81 E-value=46 Score=22.34 Aligned_cols=21 Identities=19% Similarity=0.090 Sum_probs=16.8
Q ss_pred eEEEEEec----hhhHHHHHhhCcc
Q psy963 7 QLVGLIGD----EDSVVGFLLGGIG 27 (128)
Q Consensus 7 ~kIaVIgD----~dtv~GFrLaGi~ 27 (128)
+||||||- .....-|..+|.+
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~ 29 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHT 29 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCc
Confidence 69999998 5556778888886
No 15
>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}
Probab=31.48 E-value=15 Score=22.69 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=17.6
Q ss_pred eEEEEEec-hhhHHHHHhhCccc
Q psy963 7 QLVGLIGD-EDSVVGFLLGGIGH 28 (128)
Q Consensus 7 ~kIaVIgD-~dtv~GFrLaGi~~ 28 (128)
.++.+||| ..-+-+-+.+|+..
T Consensus 159 ~~~l~vgDs~~di~~A~~aG~~t 181 (197)
T d2b0ca1 159 SDTVFFDDNADNIEGANQLGITS 181 (197)
T ss_dssp GGEEEEESCHHHHHHHHTTTCEE
T ss_pred CeEEEEeCCHHHHHHHHHcCCEE
Confidence 56899999 55567889999974
No 16
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=31.34 E-value=77 Score=22.63 Aligned_cols=92 Identities=12% Similarity=0.157 Sum_probs=45.6
Q ss_pred chhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehH-H-HHHHHHHHHHhhhCC
Q psy963 14 DEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRL-V-ADRIRHTLDIRERSN 91 (128)
Q Consensus 14 D~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~-~-a~~ir~~i~~~~~~~ 91 (128)
-++++.-++-+|+.| +.+.|- +.||.++... ..++.++..|++-.- . .++++. +.+..
T Consensus 97 ~~~f~~~~~~~Gv~G-------------liipDL--P~eE~~~~~~-~~~~~gl~~I~lvaPtt~~~ri~~-i~~~s--- 156 (248)
T d1geqa_ 97 VRNFLAEAKASGVDG-------------ILVVDL--PVFHAKEFTE-IAREEGIKTVFLAAPNTPDERLKV-IDDMT--- 156 (248)
T ss_dssp HHHHHHHHHHHTCCE-------------EEETTC--CGGGHHHHHH-HHHHHTCEEEEEECTTCCHHHHHH-HHHHC---
T ss_pred HHHHhhhhcccCeeE-------------EeccCC--cHHHHHHHHh-hccccCcceEEEecccchhHHHHH-HHhcC---
Confidence 345556667889987 466554 5677766444 444567777766533 3 344444 33322
Q ss_pred CcccEEEEcCCCCCCCCCCCchHHHH---HHhhccCC
Q psy963 92 QVYPIVLEIPSALDAFHYTITDEDKQ---CRNIATLP 125 (128)
Q Consensus 92 ~~~P~IveIPs~~g~~~~~~~~i~k~---~~~~~~~~ 125 (128)
+.+==.+..++..|....-.+.+.++ +|++..+|
T Consensus 157 ~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t~~P 193 (248)
T d1geqa_ 157 TGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNK 193 (248)
T ss_dssp SSEEEEECCC-------CCCHHHHHHHHHHHHHCSSC
T ss_pred CCeEEEEecccccccchhhhhhHHHHHHHHhhhcccc
Confidence 33334455666666433333444444 44444554
No 17
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}
Probab=31.12 E-value=42 Score=22.32 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=16.5
Q ss_pred eEEEEEec----hhhHHHHHhhCcc
Q psy963 7 QLVGLIGD----EDSVVGFLLGGIG 27 (128)
Q Consensus 7 ~kIaVIgD----~dtv~GFrLaGi~ 27 (128)
+||||||- .....-|..+|++
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~ 29 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTP 29 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe
Confidence 68999998 4446678888886
No 18
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=31.00 E-value=11 Score=24.37 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=41.8
Q ss_pred eEEEEEech---hh----HHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHH--HH---HHHHhcCCCeEEEEEeh
Q psy963 7 QLVGLIGDE---DS----VVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIE--DA---FRTLVRRTDVGIVLITR 74 (128)
Q Consensus 7 ~kIaVIgD~---dt----v~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~--~~---~~~l~~~~digIIiIte 74 (128)
+.|||||-+ +. ++-.++.|..+ +.|.|+... +++. .. |.++=..-|+++|++..
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g-----------~v~pVnP~~---~~i~G~~~y~sl~dlp~~vDlvvi~vp~ 74 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKG-----------KVYPVNIKE---EEVQGVKAYKSVKDIPDEIDLAIIVVPK 74 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSS-----------EEEEECSSC---SEETTEECBSSTTSCSSCCSEEEECSCH
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCC-----------cEEEeccCc---cccCCeEeecchhhcCCCCceEEEecCh
Confidence 789999943 32 44444444333 346664432 3332 22 23333456888888886
Q ss_pred HHHHHHHHHHHHhhhCCCcccEEEEcCCCCCCC
Q psy963 75 LVADRIRHTLDIRERSNQVYPIVLEIPSALDAF 107 (128)
Q Consensus 75 ~~a~~ir~~i~~~~~~~~~~P~IveIPs~~g~~ 107 (128)
.....+=++..+. + .+.++-+.+..+-.
T Consensus 75 ~~~~~~~~~~~~~----g-~~~~vi~s~Gf~e~ 102 (129)
T d2csua1 75 RFVKDTLIQCGEK----G-VKGVVIITAGFGET 102 (129)
T ss_dssp HHHHHHHHHHHHH----T-CCEEEECCCSSTTS
T ss_pred HHhHHHHHHHHHc----C-CCEEEEeccccccc
Confidence 6543332323321 2 35666666654433
No 19
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]}
Probab=30.54 E-value=58 Score=21.19 Aligned_cols=58 Identities=10% Similarity=0.134 Sum_probs=37.4
Q ss_pred cCCCeEEEEEehH----HHHHHHHHHHHhhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhccCCC
Q psy963 63 RRTDVGIVLITRL----VADRIRHTLDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIATLPK 126 (128)
Q Consensus 63 ~~~digIIiIte~----~a~~ir~~i~~~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~~~~~ 126 (128)
...++ +|+++++ -.+.+.+.++.+..+ +..-+..-|.+..|- + +.+.+.+..+.||.+
T Consensus 68 ~~~~~-~I~LDe~Gk~~sS~~fA~~i~~~~~~-g~~~i~FiIGGa~G~---~-~~~~~~a~~~lSls~ 129 (157)
T d1vh0a_ 68 KPQST-VITLEIQGKMLSSEGLAQELNQRMTQ-GQSDFVFVIGGSNGL---H-KDVLQRSNYALSFSK 129 (157)
T ss_dssp CTTSE-EEEEEEEEECCCHHHHHHHHHHHHHT-TCCEEEEEECBTTBC---C-HHHHHHCSEEECSCS
T ss_pred CCCCe-EEEEecccccCCCHHHHHHHHHHHhh-cCCceEEEEcCCCcc---C-HHHHhhcCCEEECcc
Confidence 34454 7777766 356666667776643 334478888888773 3 667777777776643
No 20
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=29.84 E-value=56 Score=20.67 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEEehHHH------HHHHHHHHHhhhCCCcccEEEEcCCCCCC
Q psy963 52 DEIEDAFRTLVRRTDVGIVLITRLVA------DRIRHTLDIRERSNQVYPIVLEIPSALDA 106 (128)
Q Consensus 52 eei~~~~~~l~~~~digIIiIte~~a------~~ir~~i~~~~~~~~~~P~IveIPs~~g~ 106 (128)
|.+++.++ .+.++++-.|+++-++. ......+..++. ...| ++.||+.+..
T Consensus 19 eale~~~~-~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~~~L~~--~~~p-v~~i~GNHD~ 75 (228)
T d1uf3a_ 19 EALEKFVK-LAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSE--AHLP-TAYVPGPQDA 75 (228)
T ss_dssp HHHHHHHT-HHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGG--GCSC-EEEECCTTSC
T ss_pred HHHHHHHH-HHhhcCCCEEEECCCCCCCCccchHHHHhhhhhcc--ccce-EEEEecCCCc
Confidence 44444444 44445666666665542 223333444441 2345 6679998885
No 21
>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}
Probab=28.78 E-value=39 Score=20.65 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=33.2
Q ss_pred eEEEEEech--hhHH------HHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehH
Q psy963 7 QLVGLIGDE--DSVV------GFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRL 75 (128)
Q Consensus 7 ~kIaVIgD~--dtv~------GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~ 75 (128)
++.||||++ .+.. .|+..|++.. |...+- +++++.+.++.+.+ .++.=+-||--
T Consensus 2 ~~~~liG~pi~hS~SP~ihn~~~~~~gi~~~------------y~~~~v--~~~~~~~~~~~l~~-~~~~G~nVT~P 63 (101)
T d1nyta2 2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHP------------YGRVLA--PINDFINTLNAFFS-AGGKGANVTVP 63 (101)
T ss_dssp CSEEEEESSCTTCSHHHHHHHHHHHHTCCCC------------EEEEEC--CTTCHHHHHHHHHH-TTCCEEEECTT
T ss_pred CEEEEeCCCcccccCHHHHHHHHHHcCCcch------------hhhhcC--ChHhHHHHHHHhhh-ccchhheeehH
Confidence 357899983 3433 6899999874 653221 23678888887754 34433456633
No 22
>d1ydla1 d.295.1.1 (A:6-71) General transcription factor IIH polypeptide 5, TFB5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.25 E-value=22 Score=21.10 Aligned_cols=26 Identities=4% Similarity=0.132 Sum_probs=21.4
Q ss_pred EEEEehHHHHHHHHHHHHhhhCCCccc
Q psy963 69 IVLITRLVADRIRHTLDIRERSNQVYP 95 (128)
Q Consensus 69 IIiIte~~a~~ir~~i~~~~~~~~~~P 95 (128)
=+||.+...+.++++|+++..+ ..+|
T Consensus 37 Hl~V~~~~~~~lk~~l~~l~d~-nsy~ 62 (66)
T d1ydla1 37 HVFVIAELVNVLQERVGELMDQ-NAFS 62 (66)
T ss_dssp EEEECTTHHHHHHHHHHHTSCC-CTTT
T ss_pred eEEEcHHHHHHHHHHHHHHHHh-cCCC
Confidence 3788899999999999999866 4444
No 23
>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}
Probab=26.51 E-value=42 Score=20.54 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=17.1
Q ss_pred cccceE-EEEEechhhH------HHHHhhCcccc
Q psy963 3 EEVLQL-VGLIGDEDSV------VGFLLGGIGHQ 29 (128)
Q Consensus 3 ~~~~~k-IaVIgD~dtv------~GFrLaGi~~~ 29 (128)
+.+++. ++++|.+-+. ..|+..|++.+
T Consensus 3 ~~~t~~~~~i~g~P~s~SP~ihn~~~~~~gi~~~ 36 (102)
T d1npya2 3 NKDTQLCMSLSGRPSNFGTTFHNYLYDKLGLNFI 36 (102)
T ss_dssp CTTCEEEEEECSSCCSHHHHHHHHHHHHHTCCEE
T ss_pred CCCCEEEEEEcCCcccCCHHHHHHHHHHcCCCeE
Confidence 333433 6788888654 35678888763
No 24
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.46 E-value=74 Score=20.19 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHhcCCCeEEEEE
Q psy963 48 ETPADEIEDAFRTLVRRTDVGIVLI 72 (128)
Q Consensus 48 ~t~~eei~~~~~~l~~~~digIIiI 72 (128)
..+.+...++++.++++++++.|++
T Consensus 60 ~~~~~~~~~~l~~~~~d~~vd~v~v 84 (163)
T d2csua3 60 SARGEDYYRTAKLLLQDPNVDMLIA 84 (163)
T ss_dssp TCCHHHHHHHHHHHHHSTTCSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCcCEEEE
Confidence 3456889999999999888865544
No 25
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}
Probab=26.26 E-value=40 Score=20.59 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCCCeEEEEEehHH
Q psy963 54 IEDAFRTLVRRTDVGIVLITRLV 76 (128)
Q Consensus 54 i~~~~~~l~~~~digIIiIte~~ 76 (128)
.+++++.+ +...+.+|++.-.+
T Consensus 33 ~~~al~~l-~~~~~dlil~D~~m 54 (121)
T d1zesa1 33 YDSAVNQL-NEPWPDLILLDWML 54 (121)
T ss_dssp HHHHHHHS-SSSCCSEEEECSSC
T ss_pred hHHHHHHH-HccCCCEEEeecCC
Confidence 34455533 45678888888554
No 26
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.02 E-value=87 Score=20.51 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=37.0
Q ss_pred HHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEe---hHHHHHHHHHHHHhhhCCCccc
Q psy963 19 VGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLIT---RLVADRIRHTLDIRERSNQVYP 95 (128)
Q Consensus 19 ~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIt---e~~a~~ir~~i~~~~~~~~~~P 95 (128)
.=|+..|++- +.. ...+|++++.++.++. +.| +|.++ ..-...+++.++.++..+...|
T Consensus 28 ~~l~~~G~~V-------------i~L-G~~~p~e~~~~~~~~~--~~d--~i~lS~l~~~~~~~~~~~~~~l~~~g~~~~ 89 (156)
T d3bula2 28 VVLQCNNYEI-------------VDL-GVMVPAEKILRTAKEV--NAD--LIGLSGLITPSLDEMVNVAKEMERQGFTIP 89 (156)
T ss_dssp HHHHTTTCEE-------------EEC-CSSBCHHHHHHHHHHH--TCS--EEEEECCSTHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHCCCEE-------------EEC-CCCCCHHHHHHHHHhh--CCC--EEEEecccccchHHHHHHHHHHHhccccce
Confidence 3477788863 222 4466789988887764 334 45555 3456777777777776533334
Q ss_pred EE
Q psy963 96 IV 97 (128)
Q Consensus 96 ~I 97 (128)
++
T Consensus 90 vi 91 (156)
T d3bula2 90 LL 91 (156)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 27
>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.69 E-value=21 Score=23.48 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=14.2
Q ss_pred cceEEEEEechhh-----HHHHHhhCcc
Q psy963 5 VLQLVGLIGDEDS-----VVGFLLGGIG 27 (128)
Q Consensus 5 ~~~kIaVIgD~dt-----v~GFrLaGi~ 27 (128)
...+|+++||--. +..+.+-|++
T Consensus 3 ~gl~I~~vGD~~nV~~Sli~~~~~~g~~ 30 (170)
T d1otha2 3 KGLTLSWIGDGNNILHSIMMSAAKFGMH 30 (170)
T ss_dssp TTCEEEEESCSSHHHHHHHTTTGGGTCE
T ss_pred CCCEEEEEcCchhHHHHHHHHHHHcCCE
Confidence 3579999999333 3334444664
No 28
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.40 E-value=76 Score=19.62 Aligned_cols=18 Identities=11% Similarity=-0.008 Sum_probs=13.4
Q ss_pred CccccceEEEEEechhhH
Q psy963 1 MAEEVLQLVGLIGDEDSV 18 (128)
Q Consensus 1 ~~~~~~~kIaVIgD~dtv 18 (128)
|++=...||-|+-|..+.
T Consensus 2 m~d~~g~rILvVDD~~~~ 19 (134)
T d1dcfa_ 2 MSNFTGLKVLVMDENGVS 19 (134)
T ss_dssp CCCCTTCEEEEECSCHHH
T ss_pred CCCCCCCEEEEEeCCHHH
Confidence 555567899999886664
No 29
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.27 E-value=33 Score=21.53 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=31.3
Q ss_pred CccccceEEEEEechhhHHHH-----HhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehH
Q psy963 1 MAEEVLQLVGLIGDEDSVVGF-----LLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRL 75 (128)
Q Consensus 1 ~~~~~~~kIaVIgD~dtv~GF-----rLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~ 75 (128)
|.++...+|-|+-|..+..-. .-.|+. ...+.+. +++.+.++ ...+.+|++.-.
T Consensus 3 ~~~~~~~~ILiVDD~~~~~~~l~~~L~~~g~~-------------v~~a~~g----~ea~~~~~----~~~~dlillD~~ 61 (133)
T d2ayxa1 3 VSDNDDMMILVVDDHPINRRLLADQLGSLGYQ-------------CKTANDG----VDALNVLS----KNHIDIVLSDVN 61 (133)
T ss_dssp CCCCCCCEEEEEESSHHHHHHHHHHHHHHTSE-------------EEEECCS----HHHHHHHH----HSCCSEEEEEES
T ss_pred CCCCCCCEEEEEECCHHHHHHHHHHHHHcCCE-------------EEEECcH----HHHHHHHh----ccCceEEEEecc
Confidence 456677899999996655433 233443 1233332 55544333 456888888855
No 30
>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Salmonella typhimurium [TaxId: 90371]}
Probab=24.03 E-value=1.1e+02 Score=21.28 Aligned_cols=52 Identities=8% Similarity=0.080 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEE----ehHHHHHHHHHHHHhhhCCCcccEEEEcCCCC
Q psy963 50 PADEIEDAFRTLVRRTDVGIVLI----TRLVADRIRHTLDIRERSNQVYPIVLEIPSAL 104 (128)
Q Consensus 50 ~~eei~~~~~~l~~~~digIIiI----te~~a~~ir~~i~~~~~~~~~~P~IveIPs~~ 104 (128)
+.+.+.+.++.++++-++..|.+ +....+.+.+.+.+++ ...+++-+++...
T Consensus 56 ~~~~i~~ql~~l~~d~~~~aIkiG~l~s~~~i~~v~~~l~~~~---~~~~vvdpv~~~~ 111 (266)
T d1jxha_ 56 EPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRHH---VRNVVLDTVMLAK 111 (266)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEECCCCSHHHHHHHHHHHHHTT---CCSEEEECCCC--
T ss_pred CHHHHHHHHHHHHhcccCceEEEcccchHHHHHHHHHHHHhcc---CCceEEecccccc
Confidence 46889999999988777776665 4667888888888876 3333444444433
No 31
>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}
Probab=24.02 E-value=19 Score=24.63 Aligned_cols=22 Identities=14% Similarity=0.370 Sum_probs=18.6
Q ss_pred eEEEEEech-hh-HHHHHhhCccc
Q psy963 7 QLVGLIGDE-DS-VVGFLLGGIGH 28 (128)
Q Consensus 7 ~kIaVIgD~-dt-v~GFrLaGi~~ 28 (128)
..+.+|||. ++ +.|.+-+|+..
T Consensus 194 ~e~v~IGD~~~~DI~~a~~aG~~t 217 (250)
T d2c4na1 194 EETVIVGDNLRTDILAGFQAGLET 217 (250)
T ss_dssp GGEEEEESCTTTHHHHHHHTTCEE
T ss_pred hheEEecCChHHHHHHHHHCCCCE
Confidence 457899996 75 99999999974
No 32
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]}
Probab=23.86 E-value=88 Score=20.14 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=34.2
Q ss_pred CCCeEEEEEehH----HHHHHHHHHHHhhhCCCcccEEEEcCCCCCCCCCCCchHHHHHHhhccCCC
Q psy963 64 RTDVGIVLITRL----VADRIRHTLDIRERSNQVYPIVLEIPSALDAFHYTITDEDKQCRNIATLPK 126 (128)
Q Consensus 64 ~~digIIiIte~----~a~~ir~~i~~~~~~~~~~P~IveIPs~~g~~~~~~~~i~k~~~~~~~~~~ 126 (128)
.+++ +|+++++ -.+.+.+.+.++..+ + ..+..-|.+..|- + +++.+.+..+.||.+
T Consensus 65 ~~~~-~I~LDe~Gk~~sS~~fA~~l~~~~~~-g-~~i~fiIGGa~G~---~-~~~~~~a~~~lsls~ 124 (153)
T d1ns5a_ 65 GKNR-IVTLDIPGKPWDTPQLAAELERWKLD-G-RDVSLLIGGPEGL---S-PACKAAAEQSWSLSA 124 (153)
T ss_dssp TTSE-EEEEEEEEECCCHHHHHHHHHHHHHH-C-SCEEEEECBTTBC---C-HHHHHHCSEEECCCS
T ss_pred cCCe-EEEeeccccccChHHHHHHHHHHhhc-c-CcEEEEEEcCCCC---C-HHHHHhhCcEEeccc
Confidence 3564 7888876 244444445555433 3 2466667776663 3 678888888877654
No 33
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}
Probab=23.77 E-value=69 Score=21.82 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=40.0
Q ss_pred ccceEEEEEechhhHHHH--------------------HhhCccccccCCCCccccceEE-EeCCCCCHHHHHHHHHHHh
Q psy963 4 EVLQLVGLIGDEDSVVGF--------------------LLGGIGHQTITPPLQTVTSNVF-VVDKETPADEIEDAFRTLV 62 (128)
Q Consensus 4 ~~~~kIaVIgD~dtv~GF--------------------rLaGi~~~~~~~~~~~~~~~~~-v~~~~t~~eei~~~~~~l~ 62 (128)
.+...+|||.|---|+|| +++||+. |. |.+ ..+++++.++.+.+.
T Consensus 55 ~k~N~VAVVtdGtaVLGLGniGp~AalPVMEGKa~LfK~fa~iDa-------------~Pi~l~-~~d~~~iv~~v~~i~ 120 (154)
T d1vl6a2 55 SRWNTVAVVSDGSAVLGLGNIGPYGALPVMEGKAFLFKAFADIDA-------------FPICLS-ESEEEKIISIVKSLE 120 (154)
T ss_dssp GGGGEEEEEECSTTBTTTBSCCHHHHHHHHHHHHHHHHHHHCCEE-------------EEEECS-CCCHHHHHHHHHHTG
T ss_pred eeccEEEEEeCCceeecCCCccccccccHHHHHHHHHHHhcCCCc-------------eeeecc-ccChHHHHHHHHHhc
Confidence 345679999998888887 5677764 55 444 456789999888664
Q ss_pred cCCCeEEEEEehH
Q psy963 63 RRTDVGIVLITRL 75 (128)
Q Consensus 63 ~~~digIIiIte~ 75 (128)
+.+|=|-+..-
T Consensus 121 --PtFggInLEDI 131 (154)
T d1vl6a2 121 --PSFGGINLEDI 131 (154)
T ss_dssp --GGCSEEEECSC
T ss_pred --ccccceehhhh
Confidence 66777777653
No 34
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=23.74 E-value=77 Score=20.27 Aligned_cols=57 Identities=9% Similarity=-0.017 Sum_probs=33.0
Q ss_pred HHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCC-eEEEEEehHHHHHHHHHHHHhhhC
Q psy963 18 VVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTD-VGIVLITRLVADRIRHTLDIRERS 90 (128)
Q Consensus 18 v~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~d-igIIiIte~~a~~ir~~i~~~~~~ 90 (128)
...|+.+|.+-+ |. ...+|.+++.++..+. +.| ++|=.+...-...+++.++.++.+
T Consensus 24 a~~l~~~G~~V~------------~L--G~~~p~e~iv~a~~~~--~~d~v~lS~~~~~~~~~~~~~~~~l~~~ 81 (137)
T d1ccwa_ 24 DHAFTNAGFNVV------------NI--GVLSPQELFIKAAIET--KADAILVSSLYGQGEIDCKGLRQKCDEA 81 (137)
T ss_dssp HHHHHHTTCEEE------------EE--EEEECHHHHHHHHHHH--TCSEEEEEECSSTHHHHHTTHHHHHHHT
T ss_pred HHHHHHCCCeEE------------ec--ccccCHHHHHHHHHhc--CCCEEEEeeccccchHHHHHHHHHHHHh
Confidence 356788898742 22 2245678888877754 344 333233333456667777776644
No 35
>d1es9a_ c.23.10.3 (A:) Platelet-activating factor acetylhydrolase {Cow (Bos taurus), alpha1 [TaxId: 9913]}
Probab=23.74 E-value=73 Score=20.87 Aligned_cols=78 Identities=13% Similarity=0.038 Sum_probs=38.2
Q ss_pred ceEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHH-Hhc--CCCeEEEEEe--------h
Q psy963 6 LQLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRT-LVR--RTDVGIVLIT--------R 74 (128)
Q Consensus 6 ~~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~-l~~--~~digIIiIt--------e 74 (128)
..+|.++||+=|- |+.-.+.-. ..... ....|+-+.. .|+ .++...+.. .+. .+|+-||++. +
T Consensus 34 ~~~vv~iGDSit~-~~~~~~~~~--~~~~~-~~v~N~Gi~G-~tt-~~~~~rl~~~~l~~~~pd~vvi~~G~ND~~~~~~ 107 (212)
T d1es9a_ 34 EPEVVFIGDSLVQ-LMHQCEIWR--ELFSP-LHALNFGIGG-DST-QHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAE 107 (212)
T ss_dssp CCSEEEEESHHHH-THHHHSCHH--HHTGG-GCEEEEECTT-CCH-HHHHHHHHTTTTTTCCCSEEEEECCTTCTTSCHH
T ss_pred CCcEEEEeCChhh-cCCCcccHH--Hhccc-cCEEEeccCc-ccH-HHHHHHHHHhhhccCCCCEEEEeccccccCCCHH
Confidence 3579999997542 322111100 00000 0112444433 333 445444553 343 5677777663 4
Q ss_pred HHHHHHHHHHHHhhh
Q psy963 75 LVADRIRHTLDIRER 89 (128)
Q Consensus 75 ~~a~~ir~~i~~~~~ 89 (128)
.+.+.++..++.++.
T Consensus 108 ~~~~~~~~ii~~l~~ 122 (212)
T d1es9a_ 108 QVTGGIKAIVQLVNE 122 (212)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777777777764
No 36
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}
Probab=23.30 E-value=65 Score=19.78 Aligned_cols=19 Identities=16% Similarity=0.031 Sum_probs=13.4
Q ss_pred CccccceEEEEEechhhHH
Q psy963 1 MAEEVLQLVGLIGDEDSVV 19 (128)
Q Consensus 1 ~~~~~~~kIaVIgD~dtv~ 19 (128)
|+-.+..||-|+-|..++.
T Consensus 1 ms~~~~~kILiVDD~~~~~ 19 (129)
T d1p6qa_ 1 MSLAEKIKVLIVDDQVTSR 19 (129)
T ss_dssp CCCSSCCCEEEECSSHHHH
T ss_pred CCCCCCCEEEEEECCHHHH
Confidence 4555667899998876653
No 37
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.13 E-value=34 Score=22.26 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=30.0
Q ss_pred HHHHhcCCCeEEEEEehHHHHHHHHHHHHhhhCCCcccEEEEcCCCCC
Q psy963 58 FRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPSALD 105 (128)
Q Consensus 58 ~~~l~~~~digIIiIte~~a~~ir~~i~~~~~~~~~~P~IveIPs~~g 105 (128)
++++++++++-+++|+..-.......+..++ ...|+++|=|--..
T Consensus 58 ~~~ll~~~~iD~v~I~tp~~~h~~~~~~~l~---~g~~v~~EKP~~~~ 102 (184)
T d1ydwa1 58 YESLLEDPEIDALYVPLPTSLHVEWAIKAAE---KGKHILLEKPVAMN 102 (184)
T ss_dssp HHHHHHCTTCCEEEECCCGGGHHHHHHHHHT---TTCEEEECSSCSSS
T ss_pred HHHhhhccccceeeecccchhhcchhhhhhh---ccceeecccccccC
Confidence 5566777788888887665555555444445 45799999876554
No 38
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}
Probab=22.96 E-value=34 Score=22.35 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=26.8
Q ss_pred HHHHhcCCCeEEEEEehHHHHHHHHHHHHhhhCCCcccEEEEcCCCCCC
Q psy963 58 FRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIVLEIPSALDA 106 (128)
Q Consensus 58 ~~~l~~~~digIIiIte~~a~~ir~~i~~~~~~~~~~P~IveIPs~~g~ 106 (128)
++++++++++-+++|+..-.....-....++ ...++++|=|--...
T Consensus 59 ~~ell~~~~id~v~I~tp~~~h~~~~~~al~---~gk~V~~EKPl~~~~ 104 (181)
T d1zh8a1 59 YEELLESGLVDAVDLTLPVELNLPFIEKALR---KGVHVICEKPISTDV 104 (181)
T ss_dssp HHHHHHSSCCSEEEECCCGGGHHHHHHHHHH---TTCEEEEESSSSSSH
T ss_pred eeccccccccceeeccccccccccccccccc---cchhhhcCCCCcCCH
Confidence 3466777777666666544333333333333 446899998875553
No 39
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=22.74 E-value=86 Score=19.63 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=13.0
Q ss_pred eEEEEEe----chhhHHHHHhhCcc
Q psy963 7 QLVGLIG----DEDSVVGFLLGGIG 27 (128)
Q Consensus 7 ~kIaVIg----D~dtv~GFrLaGi~ 27 (128)
+||+||| ..-....|+-.|.+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~ 25 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHY 25 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCE
Confidence 4788888 34445556556653
No 40
>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}
Probab=22.58 E-value=44 Score=22.46 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=19.2
Q ss_pred ceEEEEEech-hh-HHHHHhhCccc
Q psy963 6 LQLVGLIGDE-DS-VVGFLLGGIGH 28 (128)
Q Consensus 6 ~~kIaVIgD~-dt-v~GFrLaGi~~ 28 (128)
..++.+|||. ++ +.|-+-+|+..
T Consensus 202 ~~~~lmVGD~~~~DI~ga~~aG~~s 226 (261)
T d1vjra_ 202 KERMAMVGDRLYTDVKLGKNAGIVS 226 (261)
T ss_dssp GGGEEEEESCHHHHHHHHHHHTCEE
T ss_pred chhcceecCChhHHHHHHHHCCCcE
Confidence 3568899996 75 99999999974
No 41
>d2f5tx2 d.136.1.5 (X:110-246) Transcriptional regulator TrmB {Thermococcus litoralis [TaxId: 2265]}
Probab=22.49 E-value=78 Score=20.83 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEeh-HHHHHHHHHHHHhhhCCCcccEE-E-EcCCCCCCCCCC
Q psy963 51 ADEIEDAFRTLVRRTDVGIVLITR-LVADRIRHTLDIRERSNQVYPIV-L-EIPSALDAFHYT 110 (128)
Q Consensus 51 ~eei~~~~~~l~~~~digIIiIte-~~a~~ir~~i~~~~~~~~~~P~I-v-eIPs~~g~~~~~ 110 (128)
-||+.+.|++-+.+-++-+|++|. +.+..||+.+...-.+ ++.=.+ + -+|+...-.+.+
T Consensus 8 ~dEAIEM~rEsLe~~e~EvIvvtP~eFF~~Ire~L~~~L~r-GvTlSlY~d~~~DlSe~~~~G 69 (137)
T d2f5tx2 8 FDEAIEMFRESLYSAKNEVIVVTPSEFFETIREDLIKTLER-GVTVSLYIDKIPDLSEFKGKG 69 (137)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEECGGGHHHHHHHHHHHHHT-TCEEEEEESSCCCCGGGTTSS
T ss_pred HHHHHHHHHHHHHhccceEEEEchHHHHHHHHHHHHHHHhc-CcEEEEEecCCCCHHHhcCcc
Confidence 378888999988888888888875 4788898855544322 333222 1 256655443333
No 42
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.39 E-value=18 Score=23.70 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=17.5
Q ss_pred CccccceEEEEEech--hhHHHHHhhC
Q psy963 1 MAEEVLQLVGLIGDE--DSVVGFLLGG 25 (128)
Q Consensus 1 ~~~~~~~kIaVIgD~--dtv~GFrLaG 25 (128)
|.+..+.||+|||-- -..+.|.|+.
T Consensus 1 m~~~~~~KI~IiGaG~vG~~~a~~l~~ 27 (148)
T d1ldna1 1 MKNNGGARVVVIGAGFVGASYVFALMN 27 (148)
T ss_dssp CTTTTSCEEEEECCSHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEECcCHHHHHHHHHHHh
Confidence 788889999999962 2235566554
No 43
>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=22.10 E-value=61 Score=20.23 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=42.3
Q ss_pred eEEEEEechhhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHH
Q psy963 7 QLVGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDI 86 (128)
Q Consensus 7 ~kIaVIgD~dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~ 86 (128)
+-+|++-|.-...|=.+.|+. .| .. +++++..+ +.-+++|+.++...++.+-+.+.+
T Consensus 29 ~iv~fiDdd~~k~G~~I~Gi~-------------V~---~~----~~l~~~~~---~~i~iai~~i~~~~~~~I~d~l~~ 85 (126)
T d2dt5a2 29 ELRGFFDVDPEKVGRPVRGGV-------------IE---HV----DLLPQRVP---GRIEIALLTVPREAAQKAADLLVA 85 (126)
T ss_dssp EEEEEEESCTTTTTCEETTEE-------------EE---EG----GGHHHHST---TTCCEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEEEeCchHhcCCEECCEE-------------Ee---cH----HHHHHHHh---hcccEEEEeCCHHHHHHHHHHHHH
Confidence 556777776666666666663 22 32 55555432 345788888888777777666665
Q ss_pred hhhCCCcccEEEEcCC
Q psy963 87 RERSNQVYPIVLEIPS 102 (128)
Q Consensus 87 ~~~~~~~~P~IveIPs 102 (128)
+. .+.|..++.
T Consensus 86 ~g-----Ik~I~~f~~ 96 (126)
T d2dt5a2 86 AG-----IKGILNFAP 96 (126)
T ss_dssp HT-----CCEEEECSS
T ss_pred cC-----CCEEeecCc
Confidence 43 457777644
No 44
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Probab=21.98 E-value=34 Score=23.34 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhc
Q psy963 52 DEIEDAFRTLVR 63 (128)
Q Consensus 52 eei~~~~~~l~~ 63 (128)
+|++++|++.++
T Consensus 160 ~el~~al~~a~~ 171 (208)
T d1ybha3 160 ADLREAIQTMLD 171 (208)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 455555555443
No 45
>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}
Probab=21.81 E-value=66 Score=20.62 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=15.4
Q ss_pred cceEEEEEech------hhHHHHHhhCcc
Q psy963 5 VLQLVGLIGDE------DSVVGFLLGGIG 27 (128)
Q Consensus 5 ~~~kIaVIgD~------dtv~GFrLaGi~ 27 (128)
+..||+++||- ..+..+...|++
T Consensus 2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~~ 30 (161)
T d1vlva2 2 KGVKVVFMGDTRNNVATSLMIACAKMGMN 30 (161)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHTTCE
T ss_pred CCCEEEEEcCCccHHHHHHHHHHHHcCCE
Confidence 35799999993 234455566775
No 46
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.72 E-value=49 Score=20.63 Aligned_cols=27 Identities=19% Similarity=0.051 Sum_probs=21.4
Q ss_pred CcccEEEEcCCCCCCCCCCCchHHHHHHhh
Q psy963 92 QVYPIVLEIPSALDAFHYTITDEDKQCRNI 121 (128)
Q Consensus 92 ~~~P~IveIPs~~g~~~~~~~~i~k~~~~~ 121 (128)
...|+||-|-+..|+ |++++-++..+.
T Consensus 19 ~~~~~iIgI~G~~GS---GKSTla~~L~~~ 45 (198)
T d1rz3a_ 19 TAGRLVLGIDGLSRS---GKTTLANQLSQT 45 (198)
T ss_dssp CSSSEEEEEEECTTS---SHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCC---CHHHHHHHHHHH
Confidence 566999999888886 888888776653
No 47
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.52 E-value=61 Score=20.05 Aligned_cols=13 Identities=8% Similarity=0.026 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhc
Q psy963 51 ADEIEDAFRTLVR 63 (128)
Q Consensus 51 ~eei~~~~~~l~~ 63 (128)
++.+.++++++++
T Consensus 15 ~~~l~~~l~sl~~ 27 (265)
T d1omza_ 15 TDLLLRLLNHYQA 27 (265)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc
Confidence 3566666666653
No 48
>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.12 E-value=44 Score=22.87 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEehHHHHHHHHHHHHhhhCCCccc-EEEEcCCCCC
Q psy963 50 PADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYP-IVLEIPSALD 105 (128)
Q Consensus 50 ~~eei~~~~~~l~~~~digIIiIte~~a~~ir~~i~~~~~~~~~~P-~IveIPs~~g 105 (128)
+|+++.++++++..+++.. +-|...-...+...+..++ | .|+||.+-.|
T Consensus 19 ~p~~vl~~~~~~~~~~~~~-m~i~~~~G~lL~~lv~~~k------pk~ILEiGt~~G 68 (214)
T d2cl5a1 19 DPQSVLEAIDTYCTQKEWA-MNVGDAKGQIMDAVIREYS------PSLVLELGAYCG 68 (214)
T ss_dssp CHHHHHHHHHHHHHHTCCC-CSCHHHHHHHHHHHHHHHC------CSEEEEECCTTS
T ss_pred CHHHHHHHHHHHHhhcCCc-cccCHHHHHHHHHHHHhhC------CCEEEEEccCch
Confidence 4689999999988766644 3477777888888787766 4 8999998877
No 49
>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.52 E-value=31 Score=22.12 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=27.0
Q ss_pred ceEEEEEech-----hhHHHHHhhCccccccCCCCccccceEEEeCCCCCHHHHHHHHHHHh
Q psy963 6 LQLVGLIGDE-----DSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLV 62 (128)
Q Consensus 6 ~~kIaVIgD~-----dtv~GFrLaGi~~~~~~~~~~~~~~~~~v~~~~t~~eei~~~~~~l~ 62 (128)
...+.++||. --+-=|+.+|..+ |.|.++ +|+.+.++.++
T Consensus 198 ~~ev~afGD~~~~g~NDi~Ml~~~g~~~-------------~~v~~~----~~~~~~~~~l~ 242 (243)
T d2amya1 198 YKTIYFFGDKTMPGGNDHEIFTDPRTMG-------------YSVTAP----EDTRRICELLF 242 (243)
T ss_dssp CSEEEEEECSCC---CCCHHHHCTTEEE-------------EECSSH----HHHHHHHHHHC
T ss_pred cceEEEEcCCCCCCCCcHHHHHccCCcE-------------EEeCCH----HHHHHHHHHHh
Confidence 3568999983 2344467888543 566553 89998888765
No 50
>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=20.26 E-value=61 Score=22.15 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=30.0
Q ss_pred HHHHHHHHhcC-----CCeEEEEEehHHHHHHHHHHHHhhhCCCcccEEE
Q psy963 54 IEDAFRTLVRR-----TDVGIVLITRLVADRIRHTLDIRERSNQVYPIVL 98 (128)
Q Consensus 54 i~~~~~~l~~~-----~digIIiIte~~a~~ir~~i~~~~~~~~~~P~Iv 98 (128)
+.+.+.+++++ .||||+.=+.+-+..|.+.+.++ ..|..+
T Consensus 18 Ia~~I~~li~~g~~~~~DIAILvRt~~~~~~i~~~L~~~-----gIP~~~ 62 (333)
T d1pjra2 18 VAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKA-----NIPYQI 62 (333)
T ss_dssp HHHHHHHHHTTTSCCGGGEEEEESSGGGHHHHHHHHHHT-----TCCEEE
T ss_pred HHHHHHHHHHcCCCCcCCEEEEEECcHhHHHHHHHHHHC-----CCCEEE
Confidence 56777777764 37899988888888898888884 468643
Done!