RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy963
(128 letters)
>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF
{Thermus thermophilus [TaxId: 274]}
Length = 104
Score = 70.5 bits (173), Expect = 9e-18
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 18/94 (19%)
Query: 9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
+ +I D ++ GF L G+ + + A+E + TLV R
Sbjct: 1 MAVIADPETAQGFRLAGLE--------------GYGA---SSAEEAQSLLETLVERGGYA 43
Query: 69 IVLITRLVADRIRHTLDIRERSNQVYPIVLEIPS 102
+V + + ++ R + P++L I
Sbjct: 44 LVAVDEALLPDPERAVE-RLMRGRDLPVLLPIAG 76
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 76
Score = 62.4 bits (152), Expect = 7e-15
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 17/92 (18%)
Query: 9 VGLIGDEDSVVGFLLGGIGHQTITPPLQTVTSNVFVVDKETPADEIEDAFRTLVRRTDVG 68
+ ++GD D +GF+L GI S+++ V + +EI A +++R DVG
Sbjct: 1 LAVVGDPDFTIGFMLAGI-------------SDIYEVTSD---EEIVKAVEDVLKRDDVG 44
Query: 69 IVLITRLVADRIRHTLDIRERSNQVYPIVLEI 100
+V++ + ++ L RE +V P + +
Sbjct: 45 VVIMKQEYLKKLPPVL-RREIDEKVEPTFVSV 75
>d1g5ga1 f.12.1.1 (A:33-66,A:224-454) Head and neck region of the
ectodomain of NDV fusion glycoprotein {Newcastle disease
virus [TaxId: 11176]}
Length = 265
Score = 26.4 bits (58), Expect = 1.2
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 38 VTSNVFVVDKETPADEIEDAFRTLVRRTDVGIVLITRLVADRIRHTLDIRERSNQVYPIV 97
+T N + D +T I+ ++ ++ + + + S V +V
Sbjct: 80 ITGNPILYDSQTQLLGIQVTLPSVGNLNNMRA-----TYLETLSVSTTKGFASALVPKVV 134
Query: 98 LEIP---SALDAFHYTITDEDKQCRNIATLP 125
++ LD + TD D C I T P
Sbjct: 135 TQVGSVIEELDTSYCIETDLDLYCTRIVTFP 165
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 24.8 bits (54), Expect = 3.2
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 2 AEEVLQLVGLIGDEDSVVGFLLGG------IGHQTITPPLQTVTSNVFVVDKETPADEIE 55
E+L LVGL DS L GG I + P + I
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 56 DAFRTLVRRTDVGIVLIT------RLVADRI 80
+ + + RR + I+LIT + + D +
Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDCV 211
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 24.9 bits (54), Expect = 3.4
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 21/95 (22%)
Query: 2 AEEVLQLVGLIGDEDSVVGFLLGG------IGHQTITPP----LQTVTSNVFVVDKETPA 51
A ++L+ + L D G L GG IG +T P + + V
Sbjct: 131 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 190
Query: 52 DEIEDAFRTLVRRTDVGIVLIT------RLVADRI 80
+ + + ++ + ++I D +
Sbjct: 191 NHVLE-----LKAKGITFLIIEHRLDIVLNYIDHL 220
>d1q46a1 a.60.14.1 (A:89-175) Eukaryotic initiation factor 2alpha,
eIF2alpha, domain 2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 87
Score = 23.9 bits (52), Expect = 3.7
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 72 ITRLVADRIRHTL-DIRERSNQVYPIVLEIPSALDAFHYTITDED 115
I R A++ + L ++ + +P+ + A +AF +I DE
Sbjct: 22 ILRYCAEKFQIPLEELYKTI--AWPLSRKFGHAYEAFKLSIIDET 64
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 24.5 bits (53), Expect = 4.9
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 2 AEEVLQLVGLIGDEDSVVGFLLGG------IGHQTIT-PPLQTVTSNVFVVDKETPADEI 54
EV +L+GL + L GG +G + P + + + +D + +
Sbjct: 120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL-RVRM 178
Query: 55 EDAFRTLVRRTDVGIVLIT------RLVADRI 80
+ L R+ V + +T + DRI
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRI 210
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 23.7 bits (51), Expect = 6.4
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 28 HQTITPPLQTVTSNVFVVDKETPADEIEDAFR 59
+ +V ++K D+I+ +
Sbjct: 81 AFRVPTANVSVVDLTCRLEKPAKYDDIKKVVK 112
>d2gnxa2 d.109.3.1 (A:295-440) Hypothetical protein BC048403 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 146
Score = 23.6 bits (51), Expect = 7.0
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 58 FRTLVRRTD---VGIVLITRLVADRI----RHTLDIRERSNQV--YPIVLEIPSALDAFH 108
+ +R+ D V ++ R H RE V YP V+ +PS H
Sbjct: 7 ISSFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVMH 66
Query: 109 YTI 111
+
Sbjct: 67 WPN 69
>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId:
4513]}
Length = 201
Score = 23.3 bits (50), Expect = 9.3
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 33 PPLQTVTSNVFVVDKETPADEIEDAFRT 60
P + V +F D P + A R
Sbjct: 158 PGIVFVPLTLFGSDPPIPTPVLTKALRV 185
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.391
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 466,049
Number of extensions: 19642
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 13
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)