RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9631
         (90 letters)



>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow
          (Bos taurus), mitochondrial [TaxId: 9913]}
          Length = 103

 Score = 59.2 bits (143), Expect = 9e-14
 Identities = 30/57 (52%), Positives = 39/57 (68%)

Query: 2  HDHVEAQIYLLTKEEGGRTRPYTPWGQAHVYSKTWDVAARIIDMGGKDMFMPGEDGN 58
          H  VEAQ+Y+LTKEEGGR +P+       ++S TWD+A RII   GK++ MPGED  
Sbjct: 1  HQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLK 57


>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu)
          {Thermus thermophilus [TaxId: 274]}
          Length = 93

 Score = 58.4 bits (141), Expect = 1e-13
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 2  HDHVEAQIYLLTKEEGGRTRPYTPWGQAHVYSKTWDVAARIIDMGGKDMFMPGED 56
          H   EA +Y+L KEEGGR   +    +   Y +T DV   +    G +M MPG++
Sbjct: 1  HTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDN 55


>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast
          (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 345

 Score = 27.1 bits (59), Expect = 0.30
 Identities = 5/60 (8%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 1  MHDHVEAQIYLLTKEEGGRTRPYTPWGQAHVYSKTWDVAARIIDMGGKDMFMPGEDGNPD 60
          +H++V  ++     E       ++      ++  ++++         ++   P      D
Sbjct: 4  IHEYVNHELRKRENE-------FSEHKNVKIFVASYNLNGCSATTKLENWLFPENTPLAD 56


>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide
          ribonucleotide synthetase PurP {Pyrococcus furiosus
          [TaxId: 2261]}
          Length = 99

 Score = 22.2 bits (48), Expect = 9.7
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 4  HVEAQIYLLTKEEGGRTRPYTPWGQAHVYSKTWDVAARIID 44
          H   QI    K+EG  T  +       +Y+K + VA   I+
Sbjct: 11 HSALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIE 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.455 

Gapped
Lambda     K      H
   0.267   0.0746    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 382,010
Number of extensions: 16052
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 6
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (21.8 bits)